AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00793

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00793.t1 MTR_2g023880 98.958 192 2 0 1 192 31 222 1.90e-136 380
MS.gene00793.t1 MTR_4g049540 60.733 191 74 1 1 191 31 220 3.76e-82 243
MS.gene00793.t1 MTR_2g088060 49.738 191 95 1 1 191 31 220 9.17e-55 173
MS.gene00793.t1 MTR_7g056133 43.094 181 95 2 2 175 33 212 6.66e-41 138
MS.gene00793.t1 MTR_5g093360 55.882 68 29 1 2 69 32 98 4.05e-22 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00793.t1 AT5G42570 62.011 179 67 1 1 179 31 208 1.21e-77 231
MS.gene00793.t1 AT1G11905 60.000 180 71 1 1 180 31 209 1.52e-72 219
MS.gene00793.t1 AT1G11905 55.556 180 78 2 1 180 31 208 9.55e-61 189
MS.gene00793.t1 AT5G48660 39.560 182 102 2 2 176 33 213 1.56e-34 122
MS.gene00793.t1 AT3G07190 39.011 182 103 2 2 176 33 213 4.93e-33 118
MS.gene00793.t1 AT3G20450 52.475 101 47 1 3 102 37 137 2.57e-28 103
MS.gene00793.t1 AT5G48660 37.226 137 79 1 47 176 1 137 9.83e-20 81.6

Find 43 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.4:+63506601 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.4:-63508968 MS.gene00793:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.4:+63506657 None:intergenic
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.4:+63506960 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.4:-63506863 MS.gene00793:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.4:-63509124 None:intergenic
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.4:+63506909 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.4:-63506730 MS.gene00793:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.4:-63508977 MS.gene00793:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2.4:-63506937 MS.gene00793:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2.4:-63506922 MS.gene00793:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.4:-63509091 MS.gene00793:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.4:+63506642 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.4:-63506795 MS.gene00793:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.4:+63506648 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.4:-63509075 MS.gene00793:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.4:-63506837 MS.gene00793:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.4:-63509102 MS.gene00793:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.4:-63506765 MS.gene00793:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.4:-63506684 MS.gene00793:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.4:-63509119 None:intergenic
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.4:-63506885 MS.gene00793:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2.4:-63508938 MS.gene00793:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2.4:-63506936 MS.gene00793:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2.4:-63508937 MS.gene00793:intron
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.4:+63506651 None:intergenic
CAACAACGTGGGATCGAACA+TGG 0.569692 2.4:-63509003 MS.gene00793:CDS
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.4:-63506716 MS.gene00793:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2.4:-63506928 MS.gene00793:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.4:+63508967 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.4:-63506715 MS.gene00793:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.4:-63506761 MS.gene00793:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.4:-63506909 MS.gene00793:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.4:-63509108 MS.gene00793:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.4:+63506727 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.4:+63508963 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.4:+63509062 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.4:-63506883 MS.gene00793:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.4:-63509014 MS.gene00793:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.4:-63506884 MS.gene00793:CDS
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.4:-63506886 MS.gene00793:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.4:-63506882 MS.gene00793:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.4:-63509015 MS.gene00793:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG + chr2.4:63507719-63507738 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG + chr2.4:63507720-63507739 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG + chr2.4:63508678-63508697 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG - chr2.4:63507800-63507819 MS.gene00793:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG - chr2.4:63506885-63506904 MS.gene00793:CDS 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG - chr2.4:63507668-63507687 MS.gene00793:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG - chr2.4:63506984-63507003 MS.gene00793:intron 15.0%
!! AATCATAAGATATATGCATA+TGG + chr2.4:63508038-63508057 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG - chr2.4:63508372-63508391 MS.gene00793:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG + chr2.4:63508266-63508285 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG - chr2.4:63506891-63506910 MS.gene00793:CDS 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG - chr2.4:63507775-63507794 MS.gene00793:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG - chr2.4:63506799-63506818 MS.gene00793:CDS 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG - chr2.4:63507028-63507047 MS.gene00793:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG - chr2.4:63508427-63508446 MS.gene00793:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG + chr2.4:63507648-63507667 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG - chr2.4:63508564-63508583 MS.gene00793:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG - chr2.4:63506800-63506819 MS.gene00793:CDS 20.0%
! AAGTTTAACAACATACTAGA+TGG + chr2.4:63508476-63508495 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG + chr2.4:63507301-63507320 None:intergenic 25.0%
! AGATTGACTACATTAATGAA+AGG + chr2.4:63507307-63507326 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG + chr2.4:63507300-63507319 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG - chr2.4:63508690-63508709 MS.gene00793:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG - chr2.4:63508881-63508900 MS.gene00793:intron 25.0%
! TTTGGAAATATGTTGAACTT+AGG + chr2.4:63508523-63508542 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG + chr2.4:63507984-63508003 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG - chr2.4:63506860-63506879 MS.gene00793:CDS 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG + chr2.4:63508541-63508560 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG - chr2.4:63507746-63507765 MS.gene00793:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG - chr2.4:63508832-63508851 MS.gene00793:intron 30.0%
AAGTTGAAAAATGTGAGCTT+TGG - chr2.4:63508326-63508345 MS.gene00793:intron 30.0%
ACAATGATTCAGCATTCATA+AGG - chr2.4:63507995-63508014 MS.gene00793:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG - chr2.4:63508953-63508972 MS.gene00793:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG + chr2.4:63507233-63507252 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG - chr2.4:63508729-63508748 MS.gene00793:intron 30.0%
CAGTATTGTTTATGTTGGAT+TGG + chr2.4:63508633-63508652 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG + chr2.4:63508761-63508780 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG + chr2.4:63508638-63508657 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG + chr2.4:63508216-63508235 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG - chr2.4:63508375-63508394 MS.gene00793:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG - chr2.4:63507032-63507051 MS.gene00793:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG - chr2.4:63508207-63508226 MS.gene00793:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG - chr2.4:63508594-63508613 MS.gene00793:intron 30.0%
TTGTTTGCCTAATTCTTTGT+TGG - chr2.4:63508206-63508225 MS.gene00793:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG - chr2.4:63508275-63508294 MS.gene00793:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG - chr2.4:63507215-63507234 MS.gene00793:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG - chr2.4:63507149-63507168 MS.gene00793:intron 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG + chr2.4:63508586-63508605 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG + chr2.4:63507975-63507994 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG - chr2.4:63508256-63508275 MS.gene00793:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG + chr2.4:63507441-63507460 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG - chr2.4:63508781-63508800 MS.gene00793:intron 35.0%
ACTCCGAAAGATCAGAAAAT+GGG + chr2.4:63507271-63507290 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG - chr2.4:63508833-63508852 MS.gene00793:intron 35.0%
ATCATTACATAAGGGAACTC+CGG - chr2.4:63508790-63508809 MS.gene00793:intron 35.0%
ATGATGAAGATTCAACAACG+TGG - chr2.4:63506703-63506722 MS.gene00793:CDS 35.0%
CAGACTGCATCATTACATAA+GGG - chr2.4:63508782-63508801 MS.gene00793:intron 35.0%
CAGTCAAAAGATAAAGAGGT+AGG - chr2.4:63508957-63508976 MS.gene00793:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG + chr2.4:63507861-63507880 None:intergenic 35.0%
GAGAATGTTCTACTTTCTTG+TGG - chr2.4:63508348-63508367 MS.gene00793:intron 35.0%
TGAATATGATCGCTTACTTG+AGG - chr2.4:63509034-63509053 MS.gene00793:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG - chr2.4:63506704-63506723 MS.gene00793:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG - chr2.4:63508002-63508021 MS.gene00793:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG - chr2.4:63508714-63508733 MS.gene00793:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG - chr2.4:63509003-63509022 MS.gene00793:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG - chr2.4:63507265-63507284 MS.gene00793:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG + chr2.4:63507079-63507098 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG - chr2.4:63508108-63508127 MS.gene00793:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG - chr2.4:63508107-63508126 MS.gene00793:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG + chr2.4:63506659-63506678 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG + chr2.4:63507947-63507966 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG + chr2.4:63508122-63508141 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG + chr2.4:63508200-63508219 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG + chr2.4:63508125-63508144 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG - chr2.4:63508835-63508854 MS.gene00793:intron 40.0%
CTTAGCCATAAGAACCTGAT+CGG + chr2.4:63506758-63506777 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG - chr2.4:63506781-63506800 MS.gene00793:CDS 40.0%
GACTCCGAAAGATCAGAAAA+TGG + chr2.4:63507272-63507291 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG + chr2.4:63508100-63508119 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG - chr2.4:63508834-63508853 MS.gene00793:intron 40.0%
GTTGTACGGATGTAATACAC+CGG - chr2.4:63507163-63507182 MS.gene00793:intron 40.0%
TCTTCTTGAAGCTACACTCA+TGG - chr2.4:63506780-63506799 MS.gene00793:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG - chr2.4:63508836-63508855 MS.gene00793:intron 40.0%
TTCTGTCAACAGATTGTAGC+TGG + chr2.4:63509079-63509098 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG - chr2.4:63506741-63506760 MS.gene00793:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG - chr2.4:63508386-63508405 MS.gene00793:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG + chr2.4:63508994-63509013 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG - chr2.4:63509002-63509021 MS.gene00793:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG - chr2.4:63508988-63509007 MS.gene00793:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG - chr2.4:63508796-63508815 MS.gene00793:intron 45.0%
AGAGGCTTTACCCTGTCAAA+CGG - chr2.4:63507496-63507515 MS.gene00793:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG + chr2.4:63509073-63509092 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG - chr2.4:63507567-63507586 MS.gene00793:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG - chr2.4:63507526-63507545 MS.gene00793:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG + chr2.4:63507856-63507875 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG - chr2.4:63506643-63506662 MS.gene00793:CDS 45.0%
GTTCGAAATACACGTTCACG+AGG + chr2.4:63507953-63507972 None:intergenic 45.0%
TCCTACCGATCAGGTTCTTA+TGG - chr2.4:63506750-63506769 MS.gene00793:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG + chr2.4:63507888-63507907 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG - chr2.4:63507457-63507476 MS.gene00793:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG - chr2.4:63507173-63507192 MS.gene00793:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG + chr2.4:63507496-63507515 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG - chr2.4:63508385-63508404 MS.gene00793:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG + chr2.4:63506643-63506662 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG + chr2.4:63507073-63507092 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG + chr2.4:63507525-63507544 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG + chr2.4:63507846-63507865 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG - chr2.4:63508183-63508202 MS.gene00793:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG - chr2.4:63507621-63507640 MS.gene00793:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG - chr2.4:63508069-63508088 MS.gene00793:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG + chr2.4:63508707-63508726 None:intergenic 50.0%
CAACAACGTGGGATCGAACA+TGG - chr2.4:63506715-63506734 MS.gene00793:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG + chr2.4:63508812-63508831 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG - chr2.4:63507613-63507632 MS.gene00793:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG - chr2.4:63508070-63508089 MS.gene00793:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG - chr2.4:63507497-63507516 MS.gene00793:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG + chr2.4:63506754-63506773 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG - chr2.4:63507433-63507452 MS.gene00793:intron 50.0%
TCTGCTATGCTCCGCTATAG+CGG + chr2.4:63507561-63507580 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG - chr2.4:63507872-63507891 MS.gene00793:intron 50.0%
TGACACTGACACAGACACGT+TGG - chr2.4:63507095-63507114 MS.gene00793:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG - chr2.4:63507412-63507431 MS.gene00793:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG - chr2.4:63508088-63508107 MS.gene00793:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG + chr2.4:63508089-63508108 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG - chr2.4:63507051-63507070 MS.gene00793:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG + chr2.4:63508088-63508107 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG + chr2.4:63507528-63507547 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG - chr2.4:63508923-63508942 MS.gene00793:intron 50.0%
! GCTTTGGATCGGTTGAAACG+AGG - chr2.4:63506610-63506629 MS.gene00793:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG - chr2.4:63507581-63507600 MS.gene00793:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG + chr2.4:63507845-63507864 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG - chr2.4:63506627-63506646 MS.gene00793:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG + chr2.4:63507490-63507509 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG + chr2.4:63509070-63509089 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG - chr2.4:63508809-63508828 MS.gene00793:intron 55.0%
CGTTCACGAGGTATAGGCAC+TGG + chr2.4:63507941-63507960 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG - chr2.4:63506616-63506635 MS.gene00793:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG - chr2.4:63508078-63508097 MS.gene00793:intron 55.0%
TCTCCGTGACCAACACACAC+CGG + chr2.4:63507185-63507204 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG - chr2.4:63507179-63507198 MS.gene00793:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG + chr2.4:63508082-63508101 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG + chr2.4:63509064-63509083 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG + chr2.4:63507923-63507942 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG + chr2.4:63507924-63507943 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG + chr2.4:63507935-63507954 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG - chr2.4:63507062-63507081 MS.gene00793:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG + chr2.4:63507510-63507529 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG - chr2.4:63507907-63507926 MS.gene00793:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG + chr2.4:63507607-63507626 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG + chr2.4:63507509-63507528 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG + chr2.4:63507491-63507510 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG + chr2.4:63507557-63507576 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG - chr2.4:63508842-63508861 MS.gene00793:intron 60.0%
GGGTAAAGCCTCTCGGACTG+GGG + chr2.4:63507489-63507508 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG - chr2.4:63507535-63507554 MS.gene00793:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG + chr2.4:63507831-63507850 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG + chr2.4:63507925-63507944 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG + chr2.4:63507834-63507853 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG + chr2.4:63507533-63507552 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG + chr2.4:63507911-63507930 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG - chr2.4:63507478-63507497 MS.gene00793:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG - chr2.4:63508855-63508874 MS.gene00793:intron 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG + chr2.4:63507476-63507495 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG - chr2.4:63507606-63507625 MS.gene00793:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG + chr2.4:63507552-63507571 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG - chr2.4:63507590-63507609 MS.gene00793:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG + chr2.4:63507602-63507621 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG - chr2.4:63507547-63507566 MS.gene00793:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG - chr2.4:63507593-63507612 MS.gene00793:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG + chr2.4:63507594-63507613 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG - chr2.4:63507594-63507613 MS.gene00793:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 63506607 63509133 63506607 ID=MS.gene00793
chr2.4 mRNA 63506607 63509133 63506607 ID=MS.gene00793.t1;Parent=MS.gene00793
chr2.4 exon 63508938 63509133 63508938 ID=MS.gene00793.t1.exon1;Parent=MS.gene00793.t1
chr2.4 CDS 63508938 63509133 63508938 ID=cds.MS.gene00793.t1;Parent=MS.gene00793.t1
chr2.4 exon 63506607 63506989 63506607 ID=MS.gene00793.t1.exon2;Parent=MS.gene00793.t1
chr2.4 CDS 63506607 63506989 63506607 ID=cds.MS.gene00793.t1;Parent=MS.gene00793.t1
Gene Sequence

>MS.gene00793

ATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAACATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAATCTTGCATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAGATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCTGGCTCTTTCCCCAGTCCGAGAGGCTTTACCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGGAGCATAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTGTCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACGTGTATTTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTTAAAGAGAAAGAGCCTTCACCCTTGGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCTCAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGAGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTCTACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene00793.t1

MALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEHGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM