AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene008177

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008177.t1 MTR_3g067945 99.444 720 4 0 1 720 1 720 0.0 1486
MS.gene008177.t1 MTR_3g095530 30.279 251 156 7 21 267 9 244 2.74e-22 100
MS.gene008177.t1 MTR_3g095530 34.426 122 77 2 586 707 250 368 1.10e-15 80.1
MS.gene008177.t1 MTR_6g004000 29.482 251 158 7 21 267 9 244 5.19e-22 99.0
MS.gene008177.t1 MTR_6g004000 31.967 122 80 2 586 707 250 368 6.67e-15 77.4
MS.gene008177.t1 MTR_7g093260 29.482 251 158 7 21 267 9 244 1.48e-21 97.8
MS.gene008177.t1 MTR_7g093260 34.426 122 77 2 586 707 250 368 1.63e-15 79.3
MS.gene008177.t1 MTR_7g026230 29.084 251 159 7 21 267 9 244 1.51e-21 97.8
MS.gene008177.t1 MTR_7g026230 33.607 122 78 2 586 707 250 368 4.86e-15 78.2
MS.gene008177.t1 MTR_2g008050 29.915 234 143 7 21 247 9 228 1.53e-21 97.8
MS.gene008177.t1 MTR_2g008050 34.426 122 77 2 586 707 250 368 1.54e-15 79.3
MS.gene008177.t1 MTR_0015s0130 29.084 251 159 7 21 267 9 244 9.19e-21 95.5
MS.gene008177.t1 MTR_0015s0130 33.607 122 78 2 586 707 250 368 3.64e-15 78.6
MS.gene008177.t1 MTR_2g096840 28.685 251 160 7 21 267 9 244 4.07e-20 93.6
MS.gene008177.t1 MTR_2g096840 33.607 122 78 2 586 707 250 368 7.96e-16 80.5
MS.gene008177.t1 MTR_7g027185 29.388 245 154 6 16 253 1 233 1.97e-18 88.2
MS.gene008177.t1 MTR_7g027185 29.388 245 154 6 16 253 1 233 2.19e-18 88.2
MS.gene008177.t1 MTR_7g027185 29.630 243 152 6 18 253 3 233 3.31e-18 86.7
MS.gene008177.t1 MTR_2g445210 36.429 140 84 2 566 705 292 426 1.02e-17 87.0
MS.gene008177.t1 MTR_8g089630 25.926 270 173 6 17 266 5 267 3.79e-14 75.9
MS.gene008177.t1 MTR_5g066400 26.891 238 143 7 19 231 7 238 2.85e-12 70.1
MS.gene008177.t1 MTR_5g066400 26.160 237 146 6 19 231 7 238 3.91e-12 69.3
MS.gene008177.t1 MTR_8g464900 26.891 238 142 8 19 231 7 237 4.94e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene008177.t1 AT3G12380 71.901 726 193 3 1 719 1 722 0.0 1079
MS.gene008177.t1 AT3G12380 71.311 732 193 4 1 719 1 728 0.0 1072
MS.gene008177.t1 AT2G42100 30.544 239 139 7 19 247 8 229 4.98e-23 102
MS.gene008177.t1 AT2G42100 33.607 122 78 2 586 707 251 369 1.42e-14 76.6
MS.gene008177.t1 AT3G53750 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT3G53750 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT3G53750 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT3G53750 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT2G37620 30.279 251 156 7 21 267 9 244 9.05e-23 101
MS.gene008177.t1 AT2G37620 32.787 122 79 2 586 707 250 368 6.80e-15 77.8
MS.gene008177.t1 AT5G09810 30.279 251 156 7 21 267 9 244 2.82e-22 100
MS.gene008177.t1 AT5G09810 34.426 122 77 2 586 707 250 368 1.88e-15 79.3
MS.gene008177.t1 AT3G12110 30.342 234 142 7 21 247 9 228 6.78e-22 99.0
MS.gene008177.t1 AT3G12110 32.787 122 79 2 586 707 250 368 7.51e-15 77.4
MS.gene008177.t1 AT3G46520 29.915 234 143 7 21 247 9 228 2.99e-21 97.1
MS.gene008177.t1 AT3G46520 32.787 122 79 2 586 707 250 368 1.07e-13 73.9
MS.gene008177.t1 AT3G46520 29.915 234 143 7 21 247 9 228 2.99e-21 97.1
MS.gene008177.t1 AT3G46520 32.787 122 79 2 586 707 250 368 1.07e-13 73.9
MS.gene008177.t1 AT2G42090 27.935 247 156 6 21 267 3 227 6.86e-21 95.5
MS.gene008177.t1 AT2G42090 33.333 123 79 2 585 707 238 357 1.33e-12 70.5
MS.gene008177.t1 AT5G59370 29.437 231 148 6 21 247 9 228 9.45e-21 95.5
MS.gene008177.t1 AT5G59370 32.787 122 79 2 586 707 250 368 1.13e-13 73.9
MS.gene008177.t1 AT5G59370 29.437 231 148 6 21 247 9 228 9.45e-21 95.5
MS.gene008177.t1 AT5G59370 32.787 122 79 2 586 707 250 368 1.13e-13 73.9
MS.gene008177.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.15e-20 95.1
MS.gene008177.t1 AT3G18780 33.333 108 69 2 586 693 250 354 4.57e-13 72.0
MS.gene008177.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.40e-20 94.7
MS.gene008177.t1 AT3G18780 31.967 122 80 2 586 707 250 368 1.37e-14 76.6
MS.gene008177.t1 AT3G18780 30.342 234 142 7 21 247 9 228 1.40e-20 94.7
MS.gene008177.t1 AT3G18780 31.967 122 80 2 586 707 250 368 1.37e-14 76.6
MS.gene008177.t1 AT1G49240 30.342 234 142 7 21 247 9 228 1.47e-20 94.7
MS.gene008177.t1 AT1G49240 31.967 122 80 2 586 707 250 368 1.34e-14 76.6
MS.gene008177.t1 AT3G27000 30.417 240 146 8 22 253 7 233 6.13e-20 93.2
MS.gene008177.t1 AT3G33520 38.525 122 72 1 591 712 298 416 5.57e-18 87.4
MS.gene008177.t1 AT1G13180 28.148 270 167 8 17 266 4 266 4.65e-16 81.6
MS.gene008177.t1 AT2G42170 33.607 122 78 2 586 707 104 222 2.86e-14 73.6
MS.gene008177.t1 AT2G42170 30.303 132 84 3 116 247 57 180 4.76e-14 74.3
MS.gene008177.t1 AT2G42170 35.577 104 64 2 586 689 202 302 1.01e-11 67.4
MS.gene008177.t1 AT2G42170 30.303 132 84 3 116 247 57 180 4.76e-14 74.3
MS.gene008177.t1 AT2G42170 35.577 104 64 2 586 689 202 302 1.01e-11 67.4
MS.gene008177.t1 AT2G42170 33.607 122 78 2 586 707 202 320 5.84e-14 74.3
MS.gene008177.t1 AT2G42170 30.303 132 84 3 116 247 57 180 7.01e-14 73.9
MS.gene008177.t1 AT2G42170 33.607 122 78 2 586 707 202 320 5.84e-14 74.3
MS.gene008177.t1 AT2G42170 30.303 132 84 3 116 247 57 180 7.01e-14 73.9

Find 180 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGATTGGCGTTGGATTT+TGG 0.159254 3.4:+68920084 None:intergenic
TTCAGAAGCTCGATTGTTTC+TGG 0.165498 3.4:-68916787 MS.gene008177:intron
CGACAGCTTCCTTTATAAAT+TGG 0.189204 3.4:+68917040 None:intergenic
CTCCGAAAGGTCCTTGTATT+TGG 0.211732 3.4:+68915533 None:intergenic
CCAATGGAGCTGCCACATTT+TGG 0.236456 3.4:+68916659 None:intergenic
TTTGGACTGAACAAAATTTC+AGG 0.251702 3.4:+68914955 None:intergenic
AACAATCTGAAAATCTTCTT+TGG 0.277742 3.4:+68915002 None:intergenic
GCGCTTCCTATTTCCGTATT+GGG 0.313695 3.4:-68920018 MS.gene008177:intron
GGAAAATGAATTACGTGGTT+TGG 0.322105 3.4:-68916508 MS.gene008177:CDS
CGCTACAACCCATGTGATTC+CGG 0.323877 3.4:-68917808 MS.gene008177:intron
AGGATGGATTATTATGAAAA+AGG 0.324137 3.4:-68914643 MS.gene008177:CDS
AGAGTACCCAATACGGAAAT+AGG 0.331001 3.4:+68920012 None:intergenic
CGAATGGGTGCAACAGGATC+AGG 0.331988 3.4:-68918854 MS.gene008177:CDS
AGTTCAATCTCGAAGTAAAA+TGG 0.346799 3.4:-68918253 MS.gene008177:CDS
CCAAAATGTGGCAGCTCCAT+TGG 0.349845 3.4:-68916659 MS.gene008177:CDS
CATAACAATGTTCCATCTTC+AGG 0.350576 3.4:+68916826 None:intergenic
TTGCGAGAAAGGCAGCAATA+AGG 0.354563 3.4:-68916596 MS.gene008177:CDS
GGCGCTTCCTATTTCCGTAT+TGG 0.360049 3.4:-68920019 MS.gene008177:CDS
AAGTTGCCAATCTTCATCTT+TGG 0.360116 3.4:+68915332 None:intergenic
GGAAGCTGTCGCACTAATAT+TGG 0.366748 3.4:-68917028 MS.gene008177:CDS
GACGGGGAACCAATTTATAA+AGG 0.369369 3.4:-68917049 MS.gene008177:CDS
TAGAGCACTTGATCCGGTTA+TGG 0.370466 3.4:-68914728 MS.gene008177:CDS
TCAGAAGGAGGCTCCTCAAC+TGG 0.380356 3.4:+68916627 None:intergenic
CAGTCCTTGCGGAAACAAAA+AGG 0.381377 3.4:-68916372 MS.gene008177:CDS
GGCTCCTCCACGAATGGAAA+TGG 0.391186 3.4:-68915474 MS.gene008177:CDS
GCTTCCACCAGTCACAAGTA+TGG 0.392619 3.4:+68914831 None:intergenic
TTTGATCGAATGGGTGCAAC+AGG 0.394008 3.4:-68918860 MS.gene008177:CDS
TTTGATAGCTTGTTGAAAAG+AGG 0.403014 3.4:-68916048 MS.gene008177:intron
AGGTCAAAGGTTGCGAGAAA+TGG 0.404209 3.4:-68916565 MS.gene008177:CDS
GCGTGGCGCCTCAGCAGGTT+GGG 0.405100 3.4:+68915038 None:intergenic
AGCTCTGTGTTATCCTCATC+TGG 0.405219 3.4:+68915267 None:intergenic
GAAGCGCTATGAAGAGGAAT+TGG 0.405469 3.4:-68915975 MS.gene008177:CDS
AATTGTTCCAAGTAAAGCTC+TGG 0.406389 3.4:+68915561 None:intergenic
TGGGAGCTACTTTCTACCTT+GGG 0.410072 3.4:+68915057 None:intergenic
TGATCAACTCCAATCCAGTT+TGG 0.410760 3.4:+68914937 None:intergenic
TTGGGAGCTACTTTCTACCT+TGG 0.411598 3.4:+68915056 None:intergenic
TGCCAAATACAAGGACCTTT+CGG 0.412730 3.4:-68915535 MS.gene008177:CDS
GGAGAAACTGTTACCATTGT+TGG 0.413207 3.4:-68919642 MS.gene008177:CDS
TGCGAGAAAGGCAGCAATAA+GGG 0.413882 3.4:-68916595 MS.gene008177:CDS
TATCACAAACACTTCGTTGT+TGG 0.429773 3.4:+68917859 None:intergenic
TGCTGCCTTTGATCGTGGTA+AGG 0.430300 3.4:-68915373 MS.gene008177:CDS
CCCTGGCATCATTGAACGCC+TGG 0.431968 3.4:-68914800 MS.gene008177:CDS
TGAGGAAGAGATTGCGAGAA+AGG 0.434305 3.4:-68916607 MS.gene008177:CDS
CGAACGCGTGGCGCCTCAGC+AGG 0.435514 3.4:+68915033 None:intergenic
AACGCCTGGAAGCTGGAATT+CGG 0.436950 3.4:-68914786 MS.gene008177:CDS
TCATCCGAATTCCAGCTTCC+AGG 0.437442 3.4:+68914782 None:intergenic
CCACGCCATGCATCCATAAC+CGG 0.439157 3.4:+68914715 None:intergenic
TACTTTGATTGTACTCGCTC+TGG 0.441154 3.4:-68919594 MS.gene008177:CDS
GATCAAAGGCAGCAGTTGTC+AGG 0.443054 3.4:+68915382 None:intergenic
ACTATTTCCATTTCCATTCG+TGG 0.445874 3.4:+68915467 None:intergenic
AAAGTATTAGTACCTATAGA+TGG 0.446199 3.4:+68918201 None:intergenic
ACTTATGGAGTTCCATCTAT+AGG 0.448061 3.4:-68918213 MS.gene008177:intron
GGAACTGAAGCGATTGTAAT+CGG 0.451537 3.4:+68920066 None:intergenic
TTGGTGCCAAAGATGAAGAT+TGG 0.451676 3.4:-68915338 MS.gene008177:CDS
CGCGTGGCGCCTCAGCAGGT+TGG 0.453077 3.4:+68915037 None:intergenic
ATCATTGAACGCCTGGAAGC+TGG 0.453300 3.4:-68914793 MS.gene008177:CDS
TCTGCCGTCAGCATGTCATC+CGG 0.453326 3.4:+68916285 None:intergenic
TTCTCATTAGACGCAGCGTC+AGG 0.453339 3.4:+68916327 None:intergenic
TCTGCTTATGCATCAGCCCC+TGG 0.455002 3.4:-68914688 MS.gene008177:CDS
TGCATACACATTCTGTGATC+AGG 0.456220 3.4:+68918280 None:intergenic
TTGGACTGAACAAAATTTCA+GGG 0.458568 3.4:+68914956 None:intergenic
CGTAAACGACTCAAAACAAA+TGG 0.459916 3.4:-68915498 MS.gene008177:CDS
AATGAGAAGGTTATCATGTA+AGG 0.466365 3.4:-68914884 MS.gene008177:CDS
AAACTGGATTGGAGTTGATC+AGG 0.466958 3.4:-68914935 MS.gene008177:CDS
AGCTTGCCCGCATCTCTTCA+AGG 0.467261 3.4:-68915248 MS.gene008177:CDS
GGAAATGGAAATAGTTTGAC+AGG 0.467693 3.4:-68915459 MS.gene008177:CDS
GGCTAGATTTACATGGGAAA+AGG 0.468160 3.4:-68916856 MS.gene008177:CDS
TGACATGCTGACGGCAGAGC+AGG 0.469962 3.4:-68916280 MS.gene008177:intron
TCTACCTTGGGCACAAATGT+TGG 0.469972 3.4:+68915069 None:intergenic
GGAGAACCCAGAGCTTTACT+TGG 0.470796 3.4:-68915568 MS.gene008177:CDS
CCGCATCTCTTCAAGGCTCC+AGG 0.473430 3.4:-68915241 MS.gene008177:intron
CAAAATGTGGCAGCTCCATT+GGG 0.477487 3.4:-68916658 MS.gene008177:CDS
GAGACTCAGTGCTGCTCAAA+GGG 0.484024 3.4:-68915418 MS.gene008177:CDS
GATGGTCTTGCTATGTGTCC+TGG 0.485729 3.4:-68917834 MS.gene008177:CDS
TCAAAGTACTTCAACAATGC+TGG 0.488489 3.4:+68919609 None:intergenic
TCCAGGCGTTCAATGATGCC+AGG 0.491307 3.4:+68914799 None:intergenic
TTGTTCAGTCCAAACTGGAT+TGG 0.495233 3.4:-68914946 MS.gene008177:CDS
ATCATGTAAGGATGAAAAGC+TGG 0.497771 3.4:-68914872 MS.gene008177:CDS
ATAGCCAGTCTCTGCTAAGA+AGG 0.501279 3.4:+68916437 None:intergenic
AATAGTTAGAGCACTTGATC+CGG 0.502102 3.4:-68914734 MS.gene008177:CDS
GGTAAGGGCGAGGATACATT+TGG 0.505021 3.4:-68915357 MS.gene008177:CDS
ACATGGGTTGTAGCGAATCC+AGG 0.505173 3.4:+68917816 None:intergenic
TGGGGTTAGATGAGATGGCC+GGG 0.510141 3.4:-68914912 MS.gene008177:CDS
TTTCACACTCACATATGATA+AGG 0.513121 3.4:+68916956 None:intergenic
CGATCCTTCTTAGCAGAGAC+TGG 0.517740 3.4:-68916441 MS.gene008177:CDS
CTCGCAATCTCTTCCTCAGA+AGG 0.518831 3.4:+68916612 None:intergenic
AATACAGGGCTAGATTTACA+TGG 0.523587 3.4:-68916863 MS.gene008177:intron
ACTTCAACAATGCTGGATCA+TGG 0.526588 3.4:+68919616 None:intergenic
GATTGTAATCGGATTGGCGT+TGG 0.527135 3.4:+68920077 None:intergenic
TCAATTAAATCTATGTCCGA+TGG 0.528487 3.4:-68916016 MS.gene008177:CDS
CTGCCGTCAGCATGTCATCC+GGG 0.530851 3.4:+68916286 None:intergenic
CAGAGACTGGCTATGTCTCT+AGG 0.531810 3.4:-68916428 MS.gene008177:CDS
TTGGGTGCCACCTCCAGTTG+AGG 0.532459 3.4:-68916640 MS.gene008177:CDS
CACACAAACATTCACTAGGA+TGG 0.534118 3.4:-68914659 MS.gene008177:CDS
CTCGCCCTTACCACGATCAA+AGG 0.535951 3.4:+68915368 None:intergenic
GACTGGCTATGTCTCTAGGC+AGG 0.538143 3.4:-68916424 MS.gene008177:CDS
AGGACTGCACAACTTTACTA+CGG 0.540370 3.4:+68916388 None:intergenic
AATGTTTGTGTGTGGAAACC+AGG 0.541962 3.4:+68914670 None:intergenic
CAACTGGAGGTGGCACCCAA+TGG 0.542988 3.4:+68916643 None:intergenic
GGAGGCTCCTCAACTGGAGG+TGG 0.543167 3.4:+68916633 None:intergenic
AGCTGTCGCACTAATATTGG+TGG 0.543175 3.4:-68917025 MS.gene008177:CDS
ACAATTGCGTGCCAAATACA+AGG 0.543355 3.4:-68915544 MS.gene008177:CDS
AGAGACTCAGTGCTGCTCAA+AGG 0.543891 3.4:-68915419 MS.gene008177:CDS
AATGGAGGCTCCTCCACGAA+TGG 0.545578 3.4:-68915480 MS.gene008177:CDS
CTGGAGCCTTGAAGAGATGC+GGG 0.545647 3.4:+68915242 None:intergenic
AAAGGTTGAAGACCTGAAGA+TGG 0.546155 3.4:-68916838 MS.gene008177:CDS
GTGGGGTTAGATGAGATGGC+CGG 0.546632 3.4:-68914913 MS.gene008177:CDS
GGAACATTGTTATGTTGCAC+AGG 0.549607 3.4:-68916817 MS.gene008177:CDS
CGAAGTGTTTGTGATAAAGA+TGG 0.552869 3.4:-68917852 MS.gene008177:CDS
GGATCCAACATTTGTGCCCA+AGG 0.558370 3.4:-68915073 MS.gene008177:CDS
GCTGCCTTTGATCGTGGTAA+GGG 0.560441 3.4:-68915372 MS.gene008177:CDS
TCAGGTGGGGTTAGATGAGA+TGG 0.560508 3.4:-68914917 MS.gene008177:CDS
ACACATTCTGTGATCAGGAT+AGG 0.562462 3.4:+68918285 None:intergenic
TTGATCCGGTTATGGATGCA+TGG 0.569262 3.4:-68914720 MS.gene008177:CDS
AAGAGGAATTGGAAAGGGAA+AGG 0.571587 3.4:-68915964 MS.gene008177:CDS
TGAAGCGATTGTAATCGGAT+TGG 0.582038 3.4:+68920071 None:intergenic
AAAACAGAAGCGCTATGAAG+AGG 0.582251 3.4:-68915981 MS.gene008177:CDS
ATTGTTCCAAGTAAAGCTCT+GGG 0.582286 3.4:+68915562 None:intergenic
AGTTGAGGAGCCTCCTTCTG+AGG 0.582751 3.4:-68916625 MS.gene008177:CDS
CAATTAAATCTATGTCCGAT+GGG 0.583416 3.4:-68916015 MS.gene008177:CDS
GAATGGGTGCAACAGGATCA+GGG 0.585195 3.4:-68918853 MS.gene008177:CDS
CTTTGATCGTGGTAAGGGCG+AGG 0.585724 3.4:-68915367 MS.gene008177:CDS
ACTAATTCCATACTTGTGAC+TGG 0.586278 3.4:-68914838 MS.gene008177:CDS
CTATGAAGAGGAATTGGAAA+GGG 0.588782 3.4:-68915969 MS.gene008177:CDS
TGGATTGGAGTTGATCAGGT+GGG 0.593502 3.4:-68914931 MS.gene008177:CDS
GTCGATAACGATGGGAGTGG+TGG 0.594078 3.4:+68920045 None:intergenic
GTTTGAGAGAGTACCCAATA+CGG 0.594884 3.4:+68920005 None:intergenic
AAGTAGCTCCCAACCTGCTG+AGG 0.596677 3.4:-68915046 MS.gene008177:CDS
GGTCTGGCAGAAAGGAGCTA+AGG 0.597955 3.4:-68916697 MS.gene008177:intron
TGAAAATCTTCTTTGGTGAG+CGG 0.599646 3.4:+68915009 None:intergenic
GCGCCATTGTCGATAACGAT+GGG 0.599979 3.4:+68920037 None:intergenic
TAAGGGAGAAACAAGGTCAA+AGG 0.600031 3.4:-68916578 MS.gene008177:CDS
GAATGCTGCGTCAACACCAA+AGG 0.600730 3.4:+68917896 None:intergenic
GGACTGCACAACTTTACTAC+GGG 0.602389 3.4:+68916389 None:intergenic
GGATTGGAGTTGATCAGGTG+GGG 0.603330 3.4:-68914930 MS.gene008177:CDS
TGGATCATGGTCACCAACAA+TGG 0.605508 3.4:+68919629 None:intergenic
AATAGTTTGACAGGTAGTGT+TGG 0.609953 3.4:-68915450 MS.gene008177:CDS
AATAGCATACCGGAATCACA+TGG 0.614786 3.4:+68917799 None:intergenic
TTGGTGAGCGGACGAACGCG+TGG 0.616384 3.4:+68915021 None:intergenic
CGGCCGCGACATAAAGCCAC+AGG 0.616729 3.4:-68919831 MS.gene008177:intron
ACAACTGCTGCCTTTGATCG+TGG 0.621156 3.4:-68915378 MS.gene008177:CDS
TGGCCGGGGTCTCAATGAGA+AGG 0.621786 3.4:-68914897 MS.gene008177:CDS
CCTGGAGCCTTGAAGAGATG+CGG 0.621822 3.4:+68915241 None:intergenic
CTGGATTGGAGTTGATCAGG+TGG 0.622971 3.4:-68914932 MS.gene008177:CDS
TTGACAGGTAGTGTTGGTCG+TGG 0.623337 3.4:-68915444 MS.gene008177:CDS
ATTGTCGATAACGATGGGAG+TGG 0.624254 3.4:+68920042 None:intergenic
AAGGAAACAACAGCTAGAAG+AGG 0.625342 3.4:-68915945 MS.gene008177:CDS
CTGGCAGAAAGGAGCTAAGG+AGG 0.626277 3.4:-68916694 MS.gene008177:intron
AATTCCATACTTGTGACTGG+TGG 0.627990 3.4:-68914835 MS.gene008177:CDS
AGCGCCATTGTCGATAACGA+TGG 0.629390 3.4:+68920036 None:intergenic
CCAGGCGTTCAATGATGCCA+GGG 0.631341 3.4:+68914800 None:intergenic
TCCACACACAAACATTCACT+AGG 0.632292 3.4:-68914663 MS.gene008177:CDS
TAACCTTCTCATTGAGACCC+CGG 0.634694 3.4:+68914894 None:intergenic
CAAAGGCAGCAGTTGTCAGG+AGG 0.634784 3.4:+68915385 None:intergenic
GCAATCTCTTCCTCAGAAGG+AGG 0.635472 3.4:+68916615 None:intergenic
TCCTAGTGAATGTTTGTGTG+TGG 0.637957 3.4:+68914662 None:intergenic
ACTCCCATCGTTATCGACAA+TGG 0.639040 3.4:-68920040 MS.gene008177:CDS
ATACCTGTGGCTTTATGTCG+CGG 0.641067 3.4:+68919828 None:intergenic
TCGCTTTCGAATGCTGATCG+TGG 0.643501 3.4:+68919570 None:intergenic
GAAGGAGGCTCCTCAACTGG+AGG 0.645561 3.4:+68916630 None:intergenic
GAGAAATGGCTGAGGCGAAG+AGG 0.646132 3.4:-68916551 MS.gene008177:CDS
ATGTTTGTGTGTGGAAACCA+GGG 0.651346 3.4:+68914671 None:intergenic
AAGGTTGCGAGAAATGGCTG+AGG 0.651418 3.4:-68916559 MS.gene008177:CDS
GTAAAGTTGTGCAGTCCTTG+CGG 0.652419 3.4:-68916383 MS.gene008177:CDS
AAACGACTCAAAACAAATGG+AGG 0.653455 3.4:-68915495 MS.gene008177:CDS
AATGGGTGCAACAGGATCAG+GGG 0.654606 3.4:-68918852 MS.gene008177:intron
ATACAGGGCTAGATTTACAT+GGG 0.656838 3.4:-68916862 MS.gene008177:intron
ATTTCCATTTCCATTCGTGG+AGG 0.662358 3.4:+68915470 None:intergenic
GCTATGAAGAGGAATTGGAA+AGG 0.664977 3.4:-68915970 MS.gene008177:CDS
CCGGTTATGGATGCATGGCG+TGG 0.666067 3.4:-68914715 MS.gene008177:CDS
CGATGACGATGAACCAGATG+AGG 0.674955 3.4:-68915280 MS.gene008177:CDS
GGGGTTAGATGAGATGGCCG+GGG 0.683662 3.4:-68914911 MS.gene008177:CDS
TTAAATCTATGTCCGATGGG+AGG 0.689589 3.4:-68916012 MS.gene008177:CDS
GTATACGCTTATAAACATCC+CGG 0.690841 3.4:-68916304 MS.gene008177:CDS
CATCCCGGATGACATGCTGA+CGG 0.695168 3.4:-68916289 MS.gene008177:CDS
GCAGCAATAAGGGAGAAACA+AGG 0.705579 3.4:-68916585 MS.gene008177:CDS
ATAGCATACCGGAATCACAT+GGG 0.715502 3.4:+68917800 None:intergenic
GAGCTGGAAAATGAATTACG+TGG 0.728785 3.4:-68916513 MS.gene008177:CDS
ATTCGGATGATTAGACCCTG+CGG 0.743477 3.4:-68914769 MS.gene008177:CDS
TGTTTGTGTGTGGAAACCAG+GGG 0.796872 3.4:+68914672 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTAAATAAAT+AGG - chr3.4:68917485-68917504 MS.gene008177:intron 0.0%
!!! TTTTATCTTTTTATAGAAAT+AGG + chr3.4:68916043-68916062 None:intergenic 10.0%
!! AATATGAATAATTTCTAACT+AGG - chr3.4:68915404-68915423 MS.gene008177:CDS 15.0%
!! ATATGAATAATTTCTAACTA+GGG - chr3.4:68915405-68915424 MS.gene008177:CDS 15.0%
!!! AATTTTGAATATTTTCATCA+TGG - chr3.4:68914746-68914765 MS.gene008177:CDS 15.0%
!!! ATTTTGAATATTTTCATCAT+GGG - chr3.4:68914747-68914766 MS.gene008177:CDS 15.0%
!!! CAATTTTCTAAGAAATTATT+TGG + chr3.4:68918583-68918602 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTTTTGCT+TGG - chr3.4:68918530-68918549 MS.gene008177:intron 15.0%
!! AACATTGTTAAAAAAACTGT+AGG - chr3.4:68917414-68917433 MS.gene008177:intron 20.0%
!! ACATTGTTAAAAAAACTGTA+GGG - chr3.4:68917415-68917434 MS.gene008177:intron 20.0%
!! ATAAAAAAACACTTTACTCA+TGG + chr3.4:68915876-68915895 None:intergenic 20.0%
!! ATATATGTTAATGTCATACA+AGG + chr3.4:68915578-68915597 None:intergenic 20.0%
!! CTTATTAAATTCTCAATACA+GGG - chr3.4:68917820-68917839 MS.gene008177:CDS 20.0%
!! TAAGAAATAGTACGTATTTA+GGG + chr3.4:68917797-68917816 None:intergenic 20.0%
!! TATTACATATTATGGGAATA+TGG - chr3.4:68915709-68915728 MS.gene008177:intron 20.0%
!! TATTCCCATAATATGTAATA+TGG + chr3.4:68915709-68915728 None:intergenic 20.0%
!! TCTTATTAAATTCTCAATAC+AGG - chr3.4:68917819-68917838 MS.gene008177:CDS 20.0%
!! TGTACCATATTACATATTAT+GGG - chr3.4:68915702-68915721 MS.gene008177:intron 20.0%
!! TTATTAACACTTTACACATT+TGG + chr3.4:68917576-68917595 None:intergenic 20.0%
!!! TGTTTTTCAGTTTGAAATAA+TGG - chr3.4:68915153-68915172 MS.gene008177:intron 20.0%
!!! TTATATTTTCAGTTTGTTGA+CGG - chr3.4:68917630-68917649 MS.gene008177:intron 20.0%
!!! TTGCTTTATTAAGGATTTTA+TGG - chr3.4:68916920-68916939 MS.gene008177:intron 20.0%
!!! TTTTTGGTGAATTTTTAGAT+GGG - chr3.4:68914799-68914818 MS.gene008177:CDS 20.0%
! AAAAAATCCTGTTGATATGT+TGG - chr3.4:68919588-68919607 MS.gene008177:CDS 25.0%
! AAACTATCAGAGTAACTATT+AGG - chr3.4:68917189-68917208 MS.gene008177:intron 25.0%
! AACAATCTGAAAATCTTCTT+TGG + chr3.4:68919698-68919717 None:intergenic 25.0%
! AACATGTATTTACAAAACCA+AGG + chr3.4:68916309-68916328 None:intergenic 25.0%
! AAGAAATAGTACGTATTTAG+GGG + chr3.4:68917796-68917815 None:intergenic 25.0%
! ATGATATAAGCTGCAAATTA+TGG + chr3.4:68915988-68916007 None:intergenic 25.0%
! ATTAAGACTATAAGCACAAA+TGG + chr3.4:68918558-68918577 None:intergenic 25.0%
! ATTATGAAAAAGGTGAAGAT+TGG - chr3.4:68920064-68920083 MS.gene008177:CDS 25.0%
! CAAACATAAGGTTAATTGTT+GGG - chr3.4:68914989-68915008 MS.gene008177:CDS 25.0%
! CATCTAAAAATTCACCAAAA+AGG + chr3.4:68914800-68914819 None:intergenic 25.0%
! CATTGTTAAAAAAACTGTAG+GGG - chr3.4:68917416-68917435 MS.gene008177:intron 25.0%
! CTAAAACTAACACACAAAAA+TGG - chr3.4:68915486-68915505 MS.gene008177:CDS 25.0%
! GAAATTATTCATATTGCTTG+TGG + chr3.4:68915399-68915418 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG + chr3.4:68916159-68916178 None:intergenic 25.0%
! GTAAGAAATAGTACGTATTT+AGG + chr3.4:68917798-68917817 None:intergenic 25.0%
! GTGTACCATATTACATATTA+TGG - chr3.4:68915701-68915720 MS.gene008177:intron 25.0%
! TAATAAAGCAAATAGCATAC+CGG + chr3.4:68916911-68916930 None:intergenic 25.0%
! TAATATTAAACTCCAATGGT+AGG - chr3.4:68915945-68915964 MS.gene008177:CDS 25.0%
! TAATTTCTAACTAGGGAAAT+AGG - chr3.4:68915412-68915431 MS.gene008177:CDS 25.0%
! TACTTGTTCATACTACAAAA+AGG + chr3.4:68915539-68915558 None:intergenic 25.0%
! TATACTCACATAATTGTAAC+AGG + chr3.4:68915193-68915212 None:intergenic 25.0%
! TCAGTAATATTAAACTCCAA+TGG - chr3.4:68915941-68915960 MS.gene008177:CDS 25.0%
! TCTTAGAAAATTGTTTACTG+TGG - chr3.4:68918590-68918609 MS.gene008177:intron 25.0%
! TGCATTTGTGTGAAAAAATA+TGG - chr3.4:68915287-68915306 MS.gene008177:CDS 25.0%
! TGTTACAATTATGTGAGTAT+AGG - chr3.4:68915192-68915211 MS.gene008177:intron 25.0%
! TTCTATCATAAGCCATATTT+CGG + chr3.4:68917241-68917260 None:intergenic 25.0%
! TTTGTAGTATGAACAAGTAA+TGG - chr3.4:68915540-68915559 MS.gene008177:CDS 25.0%
!! AAAGTATTAGTACCTATAGA+TGG + chr3.4:68916499-68916518 None:intergenic 25.0%
!! ATAGGATGAATCATTTTCAA+TGG - chr3.4:68917503-68917522 MS.gene008177:intron 25.0%
!! CATTAATGTACAGTGTTTTA+AGG - chr3.4:68915733-68915752 MS.gene008177:intron 25.0%
!! GAAGATTTTCAGATTGTTTT+CGG - chr3.4:68919700-68919719 MS.gene008177:intron 25.0%
!! GAATTTCTTTTGAATCAACT+TGG - chr3.4:68918211-68918230 MS.gene008177:intron 25.0%
!! GCATTGTACATGTAATTTTA+TGG - chr3.4:68916746-68916765 MS.gene008177:intron 25.0%
!! GTATGCTATTTGCTTTATTA+AGG - chr3.4:68916911-68916930 MS.gene008177:intron 25.0%
!! TGTTGATATCTGTTTAAGTT+AGG - chr3.4:68916724-68916743 MS.gene008177:intron 25.0%
!!! AATACTTTTTAACCCTACAA+TGG - chr3.4:68916511-68916530 MS.gene008177:CDS 25.0%
!!! AGGATGGATTATTATGAAAA+AGG - chr3.4:68920054-68920073 MS.gene008177:CDS 25.0%
!!! AGTGCTCTAACTATTTTTAT+AGG + chr3.4:68919958-68919977 None:intergenic 25.0%
!!! CATTTTTGTGTGTTAGTTTT+AGG + chr3.4:68915488-68915507 None:intergenic 25.0%
!!! CTTTTTGGTGAATTTTTAGA+TGG - chr3.4:68914798-68914817 MS.gene008177:CDS 25.0%
!!! TATATTTTCAGTTTGTTGAC+GGG - chr3.4:68917631-68917650 MS.gene008177:intron 25.0%
!!! TGCTTTAAAATGTTTCTGAT+TGG - chr3.4:68919082-68919101 MS.gene008177:intron 25.0%
!!! TGTTGTTGTTGCTTTATTTA+AGG - chr3.4:68917321-68917340 MS.gene008177:intron 25.0%
AACAGTAGAAAAACTTAGAC+GGG + chr3.4:68917956-68917975 None:intergenic 30.0%
AAGACTTATACGCCATTTAA+TGG - chr3.4:68917979-68917998 MS.gene008177:intron 30.0%
AAGCTACAAGCATATTTGAA+GGG + chr3.4:68918510-68918529 None:intergenic 30.0%
AAGCTTACTAAGTTCCTTAA+TGG - chr3.4:68918950-68918969 MS.gene008177:intron 30.0%
AATGAGAAGGTTATCATGTA+AGG - chr3.4:68919813-68919832 MS.gene008177:intron 30.0%
AGAAAACTGGCTAAATCTTT+AGG - chr3.4:68918978-68918997 MS.gene008177:intron 30.0%
AGAGTTGGAAATTAATGAGT+TGG - chr3.4:68917214-68917233 MS.gene008177:intron 30.0%
AGCTTACTAAGTTCCTTAAT+GGG - chr3.4:68918951-68918970 MS.gene008177:intron 30.0%
AGCTTGAATAAATTGAAGCA+TGG + chr3.4:68918795-68918814 None:intergenic 30.0%
AGGTTCATAACAACTAGTTA+GGG - chr3.4:68915676-68915695 MS.gene008177:intron 30.0%
AGTAACTATTAGGAAAGAGT+TGG - chr3.4:68917199-68917218 MS.gene008177:intron 30.0%
AGTTCAATCTCGAAGTAAAA+TGG - chr3.4:68916444-68916463 MS.gene008177:CDS 30.0%
ATAGGTCACTACATCAAAAT+AGG + chr3.4:68915238-68915257 None:intergenic 30.0%
ATTATGGTGTTTATCCAAAC+AGG + chr3.4:68915972-68915991 None:intergenic 30.0%
CAAAGTTGACAATGTTTGTT+GGG - chr3.4:68918617-68918636 MS.gene008177:intron 30.0%
CAATTAAATCTATGTCCGAT+GGG - chr3.4:68918682-68918701 MS.gene008177:intron 30.0%
CATAAGTTCAAACCTATCTA+TGG + chr3.4:68915333-68915352 None:intergenic 30.0%
CTCCTTATTACAGAATCTAT+AGG + chr3.4:68917128-68917147 None:intergenic 30.0%
CTTTGGACATTCTTAACATA+GGG - chr3.4:68919108-68919127 MS.gene008177:intron 30.0%
GAACAGTAGAAAAACTTAGA+CGG + chr3.4:68917957-68917976 None:intergenic 30.0%
GAATGTAACCATATGTTCAT+AGG - chr3.4:68915656-68915675 MS.gene008177:intron 30.0%
GACCTATAGATTCTGTAATA+AGG - chr3.4:68917123-68917142 MS.gene008177:intron 30.0%
GCAAACATAAGGTTAATTGT+TGG - chr3.4:68914988-68915007 MS.gene008177:CDS 30.0%
GTCATCAAAAATAAATGAGC+TGG - chr3.4:68918168-68918187 MS.gene008177:intron 30.0%
GTCTATGTTTAGCAAACATA+AGG - chr3.4:68914977-68914996 MS.gene008177:CDS 30.0%
GTTATGAACCTATGAACATA+TGG + chr3.4:68915667-68915686 None:intergenic 30.0%
TACAATTATGTGAGTATAGG+AGG - chr3.4:68915195-68915214 MS.gene008177:intron 30.0%
TAGGTTCATAACAACTAGTT+AGG - chr3.4:68915675-68915694 MS.gene008177:intron 30.0%
TCAATTAAATCTATGTCCGA+TGG - chr3.4:68918681-68918700 MS.gene008177:intron 30.0%
TCTTGTGACATAGTTATTAC+TGG - chr3.4:68916680-68916699 MS.gene008177:CDS 30.0%
TCTTTGGACATTCTTAACAT+AGG - chr3.4:68919107-68919126 MS.gene008177:intron 30.0%
TGAATTGAAGTGAGACAATA+AGG - chr3.4:68915601-68915620 MS.gene008177:intron 30.0%
TGGCTTATGATAGAACATTA+TGG - chr3.4:68917246-68917265 MS.gene008177:intron 30.0%
TTAAATGGCGTATAAGTCTT+AGG + chr3.4:68917979-68917998 None:intergenic 30.0%
TTGGACTGAACAAAATTTCA+GGG + chr3.4:68919744-68919763 None:intergenic 30.0%
TTTAACAATGTTTGTCTGTG+AGG + chr3.4:68917406-68917425 None:intergenic 30.0%
TTTCACACTCACATATGATA+AGG + chr3.4:68917744-68917763 None:intergenic 30.0%
TTTGGACTGAACAAAATTTC+AGG + chr3.4:68919745-68919764 None:intergenic 30.0%
! AAATTTTGTTCAGTCCAAAC+TGG - chr3.4:68919746-68919765 MS.gene008177:intron 30.0%
! ATTTTACTTCGAGATTGAAC+TGG + chr3.4:68916445-68916464 None:intergenic 30.0%
! ATTTTATGGTAAAGACGAGA+TGG - chr3.4:68916934-68916953 MS.gene008177:intron 30.0%
! TGACATAGTTATTACTGGTT+TGG - chr3.4:68916685-68916704 MS.gene008177:CDS 30.0%
! TTTTACTTCGAGATTGAACT+GGG + chr3.4:68916444-68916463 None:intergenic 30.0%
! TTTTATGGTAAAGACGAGAT+GGG - chr3.4:68916935-68916954 MS.gene008177:intron 30.0%
! TTTTCATTTACGAATAGACC+TGG + chr3.4:68916621-68916640 None:intergenic 30.0%
! TTTTTAACATTGTGTGACAC+AGG - chr3.4:68915034-68915053 MS.gene008177:CDS 30.0%
! TTTTTCGCAACATTGTTCAA+CGG - chr3.4:68914846-68914865 MS.gene008177:CDS 30.0%
!! ATGTTTCTGATTGGTTTCTT+TGG - chr3.4:68919091-68919110 MS.gene008177:intron 30.0%
!! CTTCAAAGTTTGTTCCTTTT+TGG - chr3.4:68914783-68914802 MS.gene008177:CDS 30.0%
!! GATTGTTTCTGGTAAGAAAT+AGG - chr3.4:68917921-68917940 MS.gene008177:intron 30.0%
!! TTTGATAGCTTGTTGAAAAG+AGG - chr3.4:68918649-68918668 MS.gene008177:intron 30.0%
!!! ATATTTTCAGTTTGTTGACG+GGG - chr3.4:68917632-68917651 MS.gene008177:intron 30.0%
!!! CACGTTTTGAAGTGAAATTA+GGG + chr3.4:68914717-68914736 None:intergenic 30.0%
!!! CCACATTTTGGTTTTTTCTT+CGG + chr3.4:68918029-68918048 None:intergenic 30.0%
!!! GAACTTCTTTTTGAGACTTA+TGG - chr3.4:68916469-68916488 MS.gene008177:CDS 30.0%
AAACGACTCAAAACAAATGG+AGG - chr3.4:68919202-68919221 MS.gene008177:intron 35.0%
AAGGCTCTTGTAAAAGATCA+AGG + chr3.4:68916543-68916562 None:intergenic 35.0%
AAGTTGCCAATCTTCATCTT+TGG + chr3.4:68919368-68919387 None:intergenic 35.0%
AATAAGGAGAGTAGATCAGA+TGG - chr3.4:68917139-68917158 MS.gene008177:intron 35.0%
AATACAGGGCTAGATTTACA+TGG - chr3.4:68917834-68917853 MS.gene008177:CDS 35.0%
AATAGTTTGACAGGTAGTGT+TGG - chr3.4:68919247-68919266 MS.gene008177:intron 35.0%
AATTGAAGCATGGAACATAC+AGG + chr3.4:68918785-68918804 None:intergenic 35.0%
AATTGTTCCAAGTAAAGCTC+TGG + chr3.4:68919139-68919158 None:intergenic 35.0%
ACAGTAGAAAAACTTAGACG+GGG + chr3.4:68917955-68917974 None:intergenic 35.0%
ACCTATAGTTGAAAAGATGG+TGG - chr3.4:68917031-68917050 MS.gene008177:CDS 35.0%
ACTAATTCCATACTTGTGAC+TGG - chr3.4:68919859-68919878 MS.gene008177:CDS 35.0%
ACTATTTCCATTTCCATTCG+TGG + chr3.4:68919233-68919252 None:intergenic 35.0%
ACTTATGGAGTTCCATCTAT+AGG - chr3.4:68916484-68916503 MS.gene008177:CDS 35.0%
AGCACCTATAGTTGAAAAGA+TGG - chr3.4:68917028-68917047 MS.gene008177:CDS 35.0%
AGGATAGTTGAAAAGATGGT+GGG - chr3.4:68917065-68917084 MS.gene008177:intron 35.0%
ATACAGGGCTAGATTTACAT+GGG - chr3.4:68917835-68917854 MS.gene008177:CDS 35.0%
ATCATGTAAGGATGAAAAGC+TGG - chr3.4:68919825-68919844 MS.gene008177:intron 35.0%
ATGTCACAAGATGTCAAACA+TGG + chr3.4:68916671-68916690 None:intergenic 35.0%
ATTGTTCCAAGTAAAGCTCT+GGG + chr3.4:68919138-68919157 None:intergenic 35.0%
CATAACAATGTTCCATCTTC+AGG + chr3.4:68917874-68917893 None:intergenic 35.0%
CATGAGAGTTCTTTGATACA+AGG + chr3.4:68919565-68919584 None:intergenic 35.0%
CCGAAGAAAAAACCAAAATG+TGG - chr3.4:68918026-68918045 MS.gene008177:intron 35.0%
CCTAATTTCACTTCAAAACG+TGG - chr3.4:68914715-68914734 MS.gene008177:CDS 35.0%
CCTATAGTTGAAAAGATGGT+GGG - chr3.4:68917032-68917051 MS.gene008177:CDS 35.0%
CGACAGCTTCCTTTATAAAT+TGG + chr3.4:68917660-68917679 None:intergenic 35.0%
CGTAAACGACTCAAAACAAA+TGG - chr3.4:68919199-68919218 MS.gene008177:intron 35.0%
CTATGAAGAGGAATTGGAAA+GGG - chr3.4:68918728-68918747 MS.gene008177:intron 35.0%
CTTACTAAGTTCCTTAATGG+GGG - chr3.4:68918953-68918972 MS.gene008177:intron 35.0%
GAAGCTACAAGCATATTTGA+AGG + chr3.4:68918511-68918530 None:intergenic 35.0%
GATCAACAACTAAACAACAC+AGG + chr3.4:68915361-68915380 None:intergenic 35.0%
GATGAAGAAAAAGATACCTG+TGG + chr3.4:68914885-68914904 None:intergenic 35.0%
GATGTTCTCATAAGCTATCT+TGG - chr3.4:68916094-68916113 MS.gene008177:intron 35.0%
GCAAAGTTGACAATGTTTGT+TGG - chr3.4:68918616-68918635 MS.gene008177:intron 35.0%
GCTTACTAAGTTCCTTAATG+GGG - chr3.4:68918952-68918971 MS.gene008177:intron 35.0%
GCTTAGGATAGTTGAAAAGA+TGG - chr3.4:68917061-68917080 MS.gene008177:intron 35.0%
GGAAAATGAATTACGTGGTT+TGG - chr3.4:68918189-68918208 MS.gene008177:intron 35.0%
GGAAATGGAAATAGTTTGAC+AGG - chr3.4:68919238-68919257 MS.gene008177:intron 35.0%
GGTATTCAGCTTAGTGAAAT+GGG - chr3.4:68918857-68918876 MS.gene008177:CDS 35.0%
GTATACGCTTATAAACATCC+CGG - chr3.4:68918393-68918412 MS.gene008177:intron 35.0%
TAACACTTTACACATTTGGC+AGG + chr3.4:68917572-68917591 None:intergenic 35.0%
TACCAAACCAACATATCAAC+AGG + chr3.4:68919598-68919617 None:intergenic 35.0%
TAGGATAGTTGAAAAGATGG+TGG - chr3.4:68917064-68917083 MS.gene008177:intron 35.0%
TATCACAAACACTTCGTTGT+TGG + chr3.4:68916841-68916860 None:intergenic 35.0%
TCAAATAAGTCCATCCAAAC+AGG - chr3.4:68916218-68916237 MS.gene008177:intron 35.0%
TGAAAATCTTCTTTGGTGAG+CGG + chr3.4:68919691-68919710 None:intergenic 35.0%
TGAAGTGAGACAATAAGGTT+TGG - chr3.4:68915606-68915625 MS.gene008177:intron 35.0%
TGGTATTCAGCTTAGTGAAA+TGG - chr3.4:68918856-68918875 MS.gene008177:CDS 35.0%
TTATACGCCATTTAATGGTC+TGG - chr3.4:68917984-68918003 MS.gene008177:intron 35.0%
TTCATAACAACTAGTTAGGG+AGG - chr3.4:68915679-68915698 MS.gene008177:intron 35.0%
! AATAGTTAGAGCACTTGATC+CGG - chr3.4:68919963-68919982 MS.gene008177:intron 35.0%
! AGATTGTTTTCGGAGTTGAA+AGG - chr3.4:68919710-68919729 MS.gene008177:intron 35.0%
! AGGTCGAGTCTTTTATAATG+TGG - chr3.4:68919481-68919500 MS.gene008177:intron 35.0%
! ATCCTGTTGATATGTTGGTT+TGG - chr3.4:68919593-68919612 MS.gene008177:CDS 35.0%
! CGAAGTGTTTGTGATAAAGA+TGG - chr3.4:68916845-68916864 MS.gene008177:CDS 35.0%
! GTTGTTTCATCTTCAGATTC+TGG - chr3.4:68915806-68915825 MS.gene008177:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr3.4:68917226-68917245 MS.gene008177:intron 35.0%
! TCAAAGTACTTCAACAATGC+TGG + chr3.4:68915091-68915110 None:intergenic 35.0%
! TTTTCGGAGTTGAAAGGTTT+AGG - chr3.4:68919716-68919735 MS.gene008177:intron 35.0%
!! GACTTTGCTTTTGATCGAAT+GGG - chr3.4:68915828-68915847 MS.gene008177:intron 35.0%
!! GATGTAGTGACCTATTTTGA+TGG - chr3.4:68915243-68915262 MS.gene008177:CDS 35.0%
!! TGTTGATATGTTGGTTTGGT+AGG - chr3.4:68919597-68919616 MS.gene008177:CDS 35.0%
!!! AACACGGCTAATTTTAGGTT+AGG + chr3.4:68919509-68919528 None:intergenic 35.0%
!!! CCACGTTTTGAAGTGAAATT+AGG + chr3.4:68914718-68914737 None:intergenic 35.0%
!!! TTGTTTTGAGTCGTTTACGT+TGG + chr3.4:68919198-68919217 None:intergenic 35.0%
AAAGGTTGAAGACCTGAAGA+TGG - chr3.4:68917859-68917878 MS.gene008177:CDS 40.0%
AAGAGGAATTGGAAAGGGAA+AGG - chr3.4:68918733-68918752 MS.gene008177:intron 40.0%
AAGGAAACAACAGCTAGAAG+AGG - chr3.4:68918752-68918771 MS.gene008177:intron 40.0%
AATAGCATACCGGAATCACA+TGG + chr3.4:68916901-68916920 None:intergenic 40.0%
AATGTTTGTGTGTGGAAACC+AGG + chr3.4:68920030-68920049 None:intergenic 40.0%
AATTCCATACTTGTGACTGG+TGG - chr3.4:68919862-68919881 MS.gene008177:CDS 40.0%
ACAATTGCGTGCCAAATACA+AGG - chr3.4:68919153-68919172 MS.gene008177:intron 40.0%
ACACATTCTGTGATCAGGAT+AGG + chr3.4:68916415-68916434 None:intergenic 40.0%
ACCAACACATACACACAACA+CGG + chr3.4:68919525-68919544 None:intergenic 40.0%
ACTTCAACAATGCTGGATCA+TGG + chr3.4:68915084-68915103 None:intergenic 40.0%
AGGACTGCACAACTTTACTA+CGG + chr3.4:68918312-68918331 None:intergenic 40.0%
ATAAAAGACTCGACCTAACC+TGG + chr3.4:68919477-68919496 None:intergenic 40.0%
ATAGCATACCGGAATCACAT+GGG + chr3.4:68916900-68916919 None:intergenic 40.0%
ATAGGATGATCAATCTGCTC+TGG + chr3.4:68916397-68916416 None:intergenic 40.0%
ATATTCATGCGAGCAAGAGA+TGG - chr3.4:68918836-68918855 MS.gene008177:intron 40.0%
ATGTTGCGAAAAACAACACG+AGG + chr3.4:68914839-68914858 None:intergenic 40.0%
ATGTTTGTGTGTGGAAACCA+GGG + chr3.4:68920029-68920048 None:intergenic 40.0%
ATTTCCATTTCCATTCGTGG+AGG + chr3.4:68919230-68919249 None:intergenic 40.0%
CACACAAACATTCACTAGGA+TGG - chr3.4:68920038-68920057 MS.gene008177:CDS 40.0%
CATTTAATGGTCTGGCAGAA+AGG - chr3.4:68917992-68918011 MS.gene008177:intron 40.0%
CCTATCTATGGCAACAAAAC+AGG + chr3.4:68915321-68915340 None:intergenic 40.0%
CTTTCTGCCAGACCATTAAA+TGG + chr3.4:68917994-68918013 None:intergenic 40.0%
GACGGGGAACCAATTTATAA+AGG - chr3.4:68917648-68917667 MS.gene008177:intron 40.0%
GAGCTGGAAAATGAATTACG+TGG - chr3.4:68918184-68918203 MS.gene008177:intron 40.0%
GCTATGAAGAGGAATTGGAA+AGG - chr3.4:68918727-68918746 MS.gene008177:intron 40.0%
GGAAATAAGCTTAGGTGGTT+TGG - chr3.4:68917086-68917105 MS.gene008177:intron 40.0%
GGAACATTGTTATGTTGCAC+AGG - chr3.4:68917880-68917899 MS.gene008177:CDS 40.0%
GGAACTGAAGCGATTGTAAT+CGG + chr3.4:68914634-68914653 None:intergenic 40.0%
GGAGAAACTGTTACCATTGT+TGG - chr3.4:68915055-68915074 MS.gene008177:CDS 40.0%
GGCTAGATTTACATGGGAAA+AGG - chr3.4:68917841-68917860 MS.gene008177:CDS 40.0%
TAAGGGAGAAACAAGGTCAA+AGG - chr3.4:68918119-68918138 MS.gene008177:intron 40.0%
TACTTTGATTGTACTCGCTC+TGG - chr3.4:68915103-68915122 MS.gene008177:intron 40.0%
TCATTTACGAATAGACCTGG+TGG + chr3.4:68916618-68916637 None:intergenic 40.0%
TCCACACACAAACATTCACT+AGG - chr3.4:68920034-68920053 MS.gene008177:CDS 40.0%
TCCTAGTGAATGTTTGTGTG+TGG + chr3.4:68920038-68920057 None:intergenic 40.0%
TGAAGCGATTGTAATCGGAT+TGG + chr3.4:68914629-68914648 None:intergenic 40.0%
TGACATGCAGCCATCAAAAT+AGG + chr3.4:68915256-68915275 None:intergenic 40.0%
TGATCAACTCCAATCCAGTT+TGG + chr3.4:68919763-68919782 None:intergenic 40.0%
TGCATACACATTCTGTGATC+AGG + chr3.4:68916420-68916439 None:intergenic 40.0%
TGCCAAATACAAGGACCTTT+CGG - chr3.4:68919162-68919181 MS.gene008177:intron 40.0%
TTAAATCTATGTCCGATGGG+AGG - chr3.4:68918685-68918704 MS.gene008177:intron 40.0%
TTCAGAAGCTCGATTGTTTC+TGG - chr3.4:68917910-68917929 MS.gene008177:intron 40.0%
TTGTTCAGTCCAAACTGGAT+TGG - chr3.4:68919751-68919770 MS.gene008177:intron 40.0%
TTTAGCAGCACACCAAAGTT+GGG + chr3.4:68916245-68916264 None:intergenic 40.0%
TTTGGCACGACACACTTTAA+AGG - chr3.4:68915624-68915643 MS.gene008177:intron 40.0%
! AAACCTTTTCCCACTAAGTG+GGG + chr3.4:68917295-68917314 None:intergenic 40.0%
! AAACTGGATTGGAGTTGATC+AGG - chr3.4:68919762-68919781 MS.gene008177:intron 40.0%
! AGAGTACCCAATACGGAAAT+AGG + chr3.4:68914688-68914707 None:intergenic 40.0%
! AGCTTGGTAATAGCAAAAGC+AGG + chr3.4:68917771-68917790 None:intergenic 40.0%
! ATCAAGGCTTTTGCCATTGT+AGG + chr3.4:68916527-68916546 None:intergenic 40.0%
! ATTGCTTGTGGCGTTCATTT+TGG + chr3.4:68915387-68915406 None:intergenic 40.0%
! ATTTGAAGGGTGTGATGACA+GGG + chr3.4:68918497-68918516 None:intergenic 40.0%
! ATTTTTATAGGCGAACCGCA+GGG + chr3.4:68919946-68919965 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr3.4:68917296-68917315 None:intergenic 40.0%
! CACACAACACGGCTAATTTT+AGG + chr3.4:68919514-68919533 None:intergenic 40.0%
! CCCACCATCTTTTCAACTAT+AGG + chr3.4:68917035-68917054 None:intergenic 40.0%
! GTTGGTCAATTTTCTCCGAA+AGG + chr3.4:68919180-68919199 None:intergenic 40.0%
! GTTGTGTGTATGTGTTGGTA+TGG - chr3.4:68919526-68919545 MS.gene008177:intron 40.0%
! TATTTGAAGGGTGTGATGAC+AGG + chr3.4:68918498-68918517 None:intergenic 40.0%
! TCAAGGCTTTTGCCATTGTA+GGG + chr3.4:68916526-68916545 None:intergenic 40.0%
! TGTTTTGCAGAGTTGCTTGT+AGG - chr3.4:68917536-68917555 MS.gene008177:intron 40.0%
!! AAAACAGAAGCGCTATGAAG+AGG - chr3.4:68918716-68918735 MS.gene008177:intron 40.0%
!! AGATGGTGGGAAATAAGCTT+AGG - chr3.4:68917045-68917064 MS.gene008177:CDS 40.0%
!! CCTGTTTTGTTGCCATAGAT+AGG - chr3.4:68915318-68915337 MS.gene008177:CDS 40.0%
!! CGCTTCTGTTTCTACTACTA+AGG + chr3.4:68916562-68916581 None:intergenic 40.0%
!! CGTTGGATTTTGGAGATGAA+AGG + chr3.4:68914606-68914625 None:intergenic 40.0%
!! CTGGCTAAATCTTTAGGACA+AGG - chr3.4:68918984-68919003 MS.gene008177:intron 40.0%
!! GGACTTTGCTTTTGATCGAA+TGG - chr3.4:68915827-68915846 MS.gene008177:intron 40.0%
!! GTTTGAGAGAGTACCCAATA+CGG + chr3.4:68914695-68914714 None:intergenic 40.0%
!! TACGTATTTAGGGGTTAGCT+TGG + chr3.4:68917787-68917806 None:intergenic 40.0%
!! TATGTTGGTTTGGTAGGACT+TGG - chr3.4:68919603-68919622 MS.gene008177:CDS 40.0%
!! TATTTTTATAGGCGAACCGC+AGG + chr3.4:68919947-68919966 None:intergenic 40.0%
!! TGGTGAATTTTTAGATGGGC+TGG - chr3.4:68914803-68914822 MS.gene008177:CDS 40.0%
!! TTGGTGCCAAAGATGAAGAT+TGG - chr3.4:68919359-68919378 MS.gene008177:intron 40.0%
AAGATTGGGCATAAGGCAAC+AGG + chr3.4:68916593-68916612 None:intergenic 45.0%
AATCCCAAGTACATGACGCA+TGG + chr3.4:68915457-68915476 None:intergenic 45.0%
ACTCCCATCGTTATCGACAA+TGG - chr3.4:68914657-68914676 MS.gene008177:CDS 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - chr3.4:68917003-68917022 MS.gene008177:CDS 45.0%
AGATCAGATGGAGCATAGTC+AGG - chr3.4:68917151-68917170 MS.gene008177:intron 45.0%
AGCTCTGTGTTATCCTCATC+TGG + chr3.4:68919433-68919452 None:intergenic 45.0%
AGCTGTCGCACTAATATTGG+TGG - chr3.4:68917672-68917691 MS.gene008177:intron 45.0%
AGGTCAAAGGTTGCGAGAAA+TGG - chr3.4:68918132-68918151 MS.gene008177:intron 45.0%
ATAGCCAGTCTCTGCTAAGA+AGG + chr3.4:68918263-68918282 None:intergenic 45.0%
ATCCAAACAGGACCTACCAT+TGG + chr3.4:68915960-68915979 None:intergenic 45.0%
ATTCGGATGATTAGACCCTG+CGG - chr3.4:68919928-68919947 MS.gene008177:intron 45.0%
ATTGTCGATAACGATGGGAG+TGG + chr3.4:68914658-68914677 None:intergenic 45.0%
CAAAATGTGGCAGCTCCATT+GGG - chr3.4:68918039-68918058 MS.gene008177:intron 45.0%
CAGTCCTTGCGGAAACAAAA+AGG - chr3.4:68918325-68918344 MS.gene008177:intron 45.0%
CCACTTAGTGGGAAAAGGTT+TGG - chr3.4:68917294-68917313 MS.gene008177:intron 45.0%
CTCCGAAAGGTCCTTGTATT+TGG + chr3.4:68919167-68919186 None:intergenic 45.0%
CTTAATGGGGGAGAGAAAAC+TGG - chr3.4:68918965-68918984 MS.gene008177:intron 45.0%
GCACGACTTCAATCTTGACA+AGG - chr3.4:68919023-68919042 MS.gene008177:intron 45.0%
GCAGCAATAAGGGAGAAACA+AGG - chr3.4:68918112-68918131 MS.gene008177:intron 45.0%
GCGCTTCCTATTTCCGTATT+GGG - chr3.4:68914679-68914698 MS.gene008177:CDS 45.0%
GGAAGCTGTCGCACTAATAT+TGG - chr3.4:68917669-68917688 MS.gene008177:intron 45.0%
GGACTGCACAACTTTACTAC+GGG + chr3.4:68918311-68918330 None:intergenic 45.0%
GTAAAGTTGTGCAGTCCTTG+CGG - chr3.4:68918314-68918333 MS.gene008177:intron 45.0%
GTTTAGCAGCACACCAAAGT+TGG + chr3.4:68916246-68916265 None:intergenic 45.0%
TAACCTTCTCATTGAGACCC+CGG + chr3.4:68919806-68919825 None:intergenic 45.0%
TCTACCTTGGGCACAAATGT+TGG + chr3.4:68919631-68919650 None:intergenic 45.0%
TGAGGAAGAGATTGCGAGAA+AGG - chr3.4:68918090-68918109 MS.gene008177:intron 45.0%
TGATGGCTGCATGTCAGAAT+TGG - chr3.4:68915260-68915279 MS.gene008177:CDS 45.0%
TGCGAGAAAGGCAGCAATAA+GGG - chr3.4:68918102-68918121 MS.gene008177:intron 45.0%
TGGATCATGGTCACCAACAA+TGG + chr3.4:68915071-68915090 None:intergenic 45.0%
TGGTAAAGACGAGATGGGAT+AGG - chr3.4:68916940-68916959 MS.gene008177:intron 45.0%
TGGTGGGAAATAAGCTTAGG+TGG - chr3.4:68917048-68917067 MS.gene008177:CDS 45.0%
TGTTTGTGTGTGGAAACCAG+GGG + chr3.4:68920028-68920047 None:intergenic 45.0%
TTAGCAGCACACCAAAGTTG+GGG + chr3.4:68916244-68916263 None:intergenic 45.0%
TTGATCCGGTTATGGATGCA+TGG - chr3.4:68919977-68919996 MS.gene008177:intron 45.0%
TTGCCATGCGTCATGTACTT+GGG - chr3.4:68915451-68915470 MS.gene008177:CDS 45.0%
TTGCGAGAAAGGCAGCAATA+AGG - chr3.4:68918101-68918120 MS.gene008177:intron 45.0%
TTTGATCGAATGGGTGCAAC+AGG - chr3.4:68915837-68915856 MS.gene008177:intron 45.0%
TTTGCCATGCGTCATGTACT+TGG - chr3.4:68915450-68915469 MS.gene008177:CDS 45.0%
! ATAGACCTGGTGGTGAAGAT+TGG + chr3.4:68916608-68916627 None:intergenic 45.0%
! CACACTTTAAAGGTTGCAGG+TGG - chr3.4:68915634-68915653 MS.gene008177:intron 45.0%
! CAGTTTTCTCTCCCCCATTA+AGG + chr3.4:68918967-68918986 None:intergenic 45.0%
! CCAAACCTTTTCCCACTAAG+TGG + chr3.4:68917297-68917316 None:intergenic 45.0%
! CGACACACTTTAAAGGTTGC+AGG - chr3.4:68915631-68915650 MS.gene008177:intron 45.0%
! CTTTGGTGTGCTGCTAAACT+TGG - chr3.4:68916247-68916266 MS.gene008177:intron 45.0%
! GAAGCGCTATGAAGAGGAAT+TGG - chr3.4:68918722-68918741 MS.gene008177:intron 45.0%
! TAGACCTGGTGGTGAAGATT+GGG + chr3.4:68916607-68916626 None:intergenic 45.0%
! TAGAGCACTTGATCCGGTTA+TGG - chr3.4:68919969-68919988 MS.gene008177:intron 45.0%
! TGGATTGGAGTTGATCAGGT+GGG - chr3.4:68919766-68919785 MS.gene008177:intron 45.0%
! TGGGAGCTACTTTCTACCTT+GGG + chr3.4:68919643-68919662 None:intergenic 45.0%
! TTGGGAGCTACTTTCTACCT+TGG + chr3.4:68919644-68919663 None:intergenic 45.0%
! TTTTAATCGCTGCCTCCCAT+CGG + chr3.4:68918700-68918719 None:intergenic 45.0%
!! ATACCTGTGGCTTTATGTCG+CGG + chr3.4:68914872-68914891 None:intergenic 45.0%
!! ATCGTGTGGTGTTGTTACCT+TGG - chr3.4:68916273-68916292 MS.gene008177:intron 45.0%
!! CTCACCTTTTTGTTTCCGCA+AGG + chr3.4:68918332-68918351 None:intergenic 45.0%
!! GATTGTAATCGGATTGGCGT+TGG + chr3.4:68914623-68914642 None:intergenic 45.0%
!! TGGTGTTGTTACCTTGGACT+TGG - chr3.4:68916279-68916298 MS.gene008177:intron 45.0%
!!! ATCGGATTGGCGTTGGATTT+TGG + chr3.4:68914616-68914635 None:intergenic 45.0%
!! TAAAAAACTAAAATAAAAAA+TGG - chr3.4:68917451-68917470 MS.gene008177:intron 5.0%
AAAGTTGGGGCCTGTTTGGA+TGG + chr3.4:68916231-68916250 None:intergenic 50.0%
AACGCCTGGAAGCTGGAATT+CGG - chr3.4:68919911-68919930 MS.gene008177:intron 50.0%
AAGGTTGCGAGAAATGGCTG+AGG - chr3.4:68918138-68918157 MS.gene008177:intron 50.0%
AATGGGTGCAACAGGATCAG+GGG - chr3.4:68915845-68915864 MS.gene008177:intron 50.0%
ACAACTGCTGCCTTTGATCG+TGG - chr3.4:68919319-68919338 MS.gene008177:intron 50.0%
ACCAAGGAACTCCAAGTCCA+AGG + chr3.4:68916293-68916312 None:intergenic 50.0%
ACCTTGGACTTGGAGTTCCT+TGG - chr3.4:68916289-68916308 MS.gene008177:CDS 50.0%
AGCGCCATTGTCGATAACGA+TGG + chr3.4:68914664-68914683 None:intergenic 50.0%
ATCATTGAACGCCTGGAAGC+TGG - chr3.4:68919904-68919923 MS.gene008177:intron 50.0%
ATCCAAACAGGCCCCAACTT+TGG - chr3.4:68916230-68916249 MS.gene008177:intron 50.0%
CCAAAATGTGGCAGCTCCAT+TGG - chr3.4:68918038-68918057 MS.gene008177:intron 50.0%
CGATCCTTCTTAGCAGAGAC+TGG - chr3.4:68918256-68918275 MS.gene008177:CDS 50.0%
CGATGACGATGAACCAGATG+AGG - chr3.4:68919417-68919436 MS.gene008177:intron 50.0%
CGCTACAACCCATGTGATTC+CGG - chr3.4:68916889-68916908 MS.gene008177:intron 50.0%
CTCCAATGGTAGGTCCTGTT+TGG - chr3.4:68915955-68915974 MS.gene008177:CDS 50.0%
CTCGCAATCTCTTCCTCAGA+AGG + chr3.4:68918088-68918107 None:intergenic 50.0%
GAATGCTGCGTCAACACCAA+AGG + chr3.4:68916804-68916823 None:intergenic 50.0%
GAATGGGTGCAACAGGATCA+GGG - chr3.4:68915844-68915863 MS.gene008177:intron 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - chr3.4:68917002-68917021 MS.gene008177:CDS 50.0%
GATCAAAGGCAGCAGTTGTC+AGG + chr3.4:68919318-68919337 None:intergenic 50.0%
GCAATCTCTTCCTCAGAAGG+AGG + chr3.4:68918085-68918104 None:intergenic 50.0%
GCCGTGTTGTGTGTATGTGT+TGG - chr3.4:68919521-68919540 MS.gene008177:intron 50.0%
GCGCCATTGTCGATAACGAT+GGG + chr3.4:68914663-68914682 None:intergenic 50.0%
GCTGCCTTTGATCGTGGTAA+GGG - chr3.4:68919325-68919344 MS.gene008177:intron 50.0%
GCTTCCACCAGTCACAAGTA+TGG + chr3.4:68919869-68919888 None:intergenic 50.0%
GGAGAACCCAGAGCTTTACT+TGG - chr3.4:68919129-68919148 MS.gene008177:intron 50.0%
GGATCCAACATTTGTGCCCA+AGG - chr3.4:68919624-68919643 MS.gene008177:CDS 50.0%
GGCGCTTCCTATTTCCGTAT+TGG - chr3.4:68914678-68914697 MS.gene008177:CDS 50.0%
GGTAAGGGCGAGGATACATT+TGG - chr3.4:68919340-68919359 MS.gene008177:intron 50.0%
GGTGGTGAAGATTGGGCATA+AGG + chr3.4:68916600-68916619 None:intergenic 50.0%
TATGCCCAATCTTCACCACC+AGG - chr3.4:68916600-68916619 MS.gene008177:CDS 50.0%
TCAGGTGGGGTTAGATGAGA+TGG - chr3.4:68919780-68919799 MS.gene008177:intron 50.0%
TCATCCGAATTCCAGCTTCC+AGG + chr3.4:68919918-68919937 None:intergenic 50.0%
TCGCTTTCGAATGCTGATCG+TGG + chr3.4:68915130-68915149 None:intergenic 50.0%
TCTCTTCAAGGCTCCAGGTT+AGG - chr3.4:68919461-68919480 MS.gene008177:intron 50.0%
TGCTGCCTTTGATCGTGGTA+AGG - chr3.4:68919324-68919343 MS.gene008177:intron 50.0%
TTCTCATTAGACGCAGCGTC+AGG + chr3.4:68918373-68918392 None:intergenic 50.0%
! ACATGGGTTGTAGCGAATCC+AGG + chr3.4:68916884-68916903 None:intergenic 50.0%
! AGAGACTCAGTGCTGCTCAA+AGG - chr3.4:68919278-68919297 MS.gene008177:intron 50.0%
! CAGAGACTGGCTATGTCTCT+AGG - chr3.4:68918269-68918288 MS.gene008177:CDS 50.0%
! CCAATGGAGCTGCCACATTT+TGG + chr3.4:68918041-68918060 None:intergenic 50.0%
! CTGGATTGGAGTTGATCAGG+TGG - chr3.4:68919765-68919784 MS.gene008177:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr3.4:68917291-68917310 None:intergenic 50.0%
! GAGACTCAGTGCTGCTCAAA+GGG - chr3.4:68919279-68919298 MS.gene008177:intron 50.0%
! GATGGTCTTGCTATGTGTCC+TGG - chr3.4:68916863-68916882 MS.gene008177:intron 50.0%
! GCTAAACTTGGTGGATCGTG+TGG - chr3.4:68916259-68916278 MS.gene008177:intron 50.0%
! GGATTGGAGTTGATCAGGTG+GGG - chr3.4:68919767-68919786 MS.gene008177:intron 50.0%
! TGGTGTGCTGCTAAACTTGG+TGG - chr3.4:68916250-68916269 MS.gene008177:intron 50.0%
! TTTTCTGCCATGCCAGCCTT+TGG - chr3.4:68916785-68916804 MS.gene008177:intron 50.0%
!! TTGACAGGTAGTGTTGGTCG+TGG - chr3.4:68919253-68919272 MS.gene008177:intron 50.0%
AAGTAGCTCCCAACCTGCTG+AGG - chr3.4:68919651-68919670 MS.gene008177:intron 55.0%
AATGGAGGCTCCTCCACGAA+TGG - chr3.4:68919217-68919236 MS.gene008177:intron 55.0%
AGCTTGCCCGCATCTCTTCA+AGG - chr3.4:68919449-68919468 MS.gene008177:intron 55.0%
AGTTGAGGAGCCTCCTTCTG+AGG - chr3.4:68918072-68918091 MS.gene008177:intron 55.0%
CAAAGGCAGCAGTTGTCAGG+AGG + chr3.4:68919315-68919334 None:intergenic 55.0%
CACCAAAGTTGGGGCCTGTT+TGG + chr3.4:68916235-68916254 None:intergenic 55.0%
CATCCCGGATGACATGCTGA+CGG - chr3.4:68918408-68918427 MS.gene008177:intron 55.0%
CCACGCCATGCATCCATAAC+CGG + chr3.4:68919985-68920004 None:intergenic 55.0%
CCAGGCGTTCAATGATGCCA+GGG + chr3.4:68919900-68919919 None:intergenic 55.0%
CCTGGAGCCTTGAAGAGATG+CGG + chr3.4:68919459-68919478 None:intergenic 55.0%
CGAATGGGTGCAACAGGATC+AGG - chr3.4:68915843-68915862 MS.gene008177:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr3.4:68917289-68917308 MS.gene008177:intron 55.0%
CTCGCCCTTACCACGATCAA+AGG + chr3.4:68919332-68919351 None:intergenic 55.0%
CTGGAGCCTTGAAGAGATGC+GGG + chr3.4:68919458-68919477 None:intergenic 55.0%
CTGGCAGAAAGGAGCTAAGG+AGG - chr3.4:68918003-68918022 MS.gene008177:intron 55.0%
CTTTGATCGTGGTAAGGGCG+AGG - chr3.4:68919330-68919349 MS.gene008177:intron 55.0%
GAGAAATGGCTGAGGCGAAG+AGG - chr3.4:68918146-68918165 MS.gene008177:intron 55.0%
GGCTCCTCCACGAATGGAAA+TGG - chr3.4:68919223-68919242 MS.gene008177:intron 55.0%
GGTCTGGCAGAAAGGAGCTA+AGG - chr3.4:68918000-68918019 MS.gene008177:intron 55.0%
GTCAACACCAAAGGCTGGCA+TGG + chr3.4:68916795-68916814 None:intergenic 55.0%
GTCGATAACGATGGGAGTGG+TGG + chr3.4:68914655-68914674 None:intergenic 55.0%
GTGCAACAGGATCAGGGGTA+TGG - chr3.4:68915850-68915869 MS.gene008177:intron 55.0%
GTGGGGTTAGATGAGATGGC+CGG - chr3.4:68919784-68919803 MS.gene008177:intron 55.0%
TCAGAAGGAGGCTCCTCAAC+TGG + chr3.4:68918073-68918092 None:intergenic 55.0%
TCCAGGCGTTCAATGATGCC+AGG + chr3.4:68919901-68919920 None:intergenic 55.0%
TCTGCCGTCAGCATGTCATC+CGG + chr3.4:68918415-68918434 None:intergenic 55.0%
TCTGCTTATGCATCAGCCCC+TGG - chr3.4:68920009-68920028 MS.gene008177:intron 55.0%
TGGGGTTAGATGAGATGGCC+GGG - chr3.4:68919785-68919804 MS.gene008177:intron 55.0%
! GACTGGCTATGTCTCTAGGC+AGG - chr3.4:68918273-68918292 MS.gene008177:CDS 55.0%
! GGTGGAAGCTCTCTTTTCCC+TGG - chr3.4:68919880-68919899 MS.gene008177:CDS 55.0%
ACGTAGCCGACCCCACTTAG+TGG - chr3.4:68917282-68917301 MS.gene008177:intron 60.0%
ACTAAGTGGGGTCGGCTACG+TGG + chr3.4:68917283-68917302 None:intergenic 60.0%
CAACTGGAGGTGGCACCCAA+TGG + chr3.4:68918057-68918076 None:intergenic 60.0%
CCCTGGCATCATTGAACGCC+TGG - chr3.4:68919897-68919916 MS.gene008177:intron 60.0%
CCGCATCTCTTCAAGGCTCC+AGG - chr3.4:68919456-68919475 MS.gene008177:intron 60.0%
CCGGTTATGGATGCATGGCG+TGG - chr3.4:68919982-68920001 MS.gene008177:intron 60.0%
CGTAGCCGACCCCACTTAGT+GGG - chr3.4:68917283-68917302 MS.gene008177:intron 60.0%
CTGCCGTCAGCATGTCATCC+GGG + chr3.4:68918414-68918433 None:intergenic 60.0%
GAAGGAGGCTCCTCAACTGG+AGG + chr3.4:68918070-68918089 None:intergenic 60.0%
GCTGCGTCAACACCAAAGGC+TGG + chr3.4:68916800-68916819 None:intergenic 60.0%
GGGGTTAGATGAGATGGCCG+GGG - chr3.4:68919786-68919805 MS.gene008177:intron 60.0%
TGACATGCTGACGGCAGAGC+AGG - chr3.4:68918417-68918436 MS.gene008177:intron 60.0%
TGGCCGGGGTCTCAATGAGA+AGG - chr3.4:68919800-68919819 MS.gene008177:intron 60.0%
! TTGGGTGCCACCTCCAGTTG+AGG - chr3.4:68918057-68918076 MS.gene008177:intron 60.0%
CGGCCGCGACATAAAGCCAC+AGG - chr3.4:68914866-68914885 MS.gene008177:CDS 65.0%
GGAGGCTCCTCAACTGGAGG+TGG + chr3.4:68918067-68918086 None:intergenic 65.0%
TTGGTGAGCGGACGAACGCG+TGG + chr3.4:68919679-68919698 None:intergenic 65.0%
GCGTGGCGCCTCAGCAGGTT+GGG + chr3.4:68919662-68919681 None:intergenic 70.0%
CGAACGCGTGGCGCCTCAGC+AGG + chr3.4:68919667-68919686 None:intergenic 75.0%
CGCGTGGCGCCTCAGCAGGT+TGG + chr3.4:68919663-68919682 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 68914600 68920119 68914600 ID=MS.gene008177
chr3.4 mRNA 68914600 68920119 68914600 ID=MS.gene008177.t1;Parent=MS.gene008177
chr3.4 exon 68920019 68920119 68920019 ID=MS.gene008177.t1.exon1;Parent=MS.gene008177.t1
chr3.4 CDS 68920019 68920119 68920019 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68919832 68919902 68919832 ID=MS.gene008177.t1.exon2;Parent=MS.gene008177.t1
chr3.4 CDS 68919832 68919902 68919832 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68919539 68919663 68919539 ID=MS.gene008177.t1.exon3;Parent=MS.gene008177.t1
chr3.4 CDS 68919539 68919663 68919539 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68918853 68918897 68918853 ID=MS.gene008177.t1.exon4;Parent=MS.gene008177.t1
chr3.4 CDS 68918853 68918897 68918853 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68918214 68918316 68918214 ID=MS.gene008177.t1.exon5;Parent=MS.gene008177.t1
chr3.4 CDS 68918214 68918316 68918214 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68917809 68917918 68917809 ID=MS.gene008177.t1.exon6;Parent=MS.gene008177.t1
chr3.4 CDS 68917809 68917918 68917809 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68916968 68917077 68916968 ID=MS.gene008177.t1.exon7;Parent=MS.gene008177.t1
chr3.4 CDS 68916968 68917077 68916968 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68916788 68916878 68916788 ID=MS.gene008177.t1.exon8;Parent=MS.gene008177.t1
chr3.4 CDS 68916788 68916878 68916788 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68916281 68916709 68916281 ID=MS.gene008177.t1.exon9;Parent=MS.gene008177.t1
chr3.4 CDS 68916281 68916709 68916281 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68915935 68916062 68915935 ID=MS.gene008177.t1.exon10;Parent=MS.gene008177.t1
chr3.4 CDS 68915935 68916062 68915935 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68915242 68915590 68915242 ID=MS.gene008177.t1.exon11;Parent=MS.gene008177.t1
chr3.4 CDS 68915242 68915590 68915242 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
chr3.4 exon 68914600 68915100 68914600 ID=MS.gene008177.t1.exon12;Parent=MS.gene008177.t1
chr3.4 CDS 68914600 68915100 68914600 ID=cds.MS.gene008177.t1;Parent=MS.gene008177.t1
Gene Sequence

>MS.gene008177

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCACCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGGTACTCTCTCAAACCCTAATTTCACTTCAAAACGTGGTTTCTTTGAATTTTGAATATTTTCATCATGGGTTTTTGATTTTAACTTCAAAGTTTGTTCCTTTTTGGTGAATTTTTAGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCGCGACATAAAGCCACAGGTATCTTTTTCTTCATCTGAATTATTGTGTCATTAATGTTGTTAAGATTGTTGTTTTTTGCTAGTTTTTGTTTGAATTGTTTTACATTAGTCTATGTTTAGCAAACATAAGGTTAATTGTTGGGATATTGAATAATTAATAGTTAATTTTTAACATTGTGTGACACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAAATAATGGAATATGTAAGTCTTCCTGTTACAATTATGTGAGTATAGGAGGAATAATTTTTTTTTTAGCCTATTTTGATGTAGTGACCTATTTTGATGGCTGCATGTCAGAATTGGAAATTGCATTTGTGTGAAAAAATATGGTAGTGCTTCCTGTTTTGTTGCCATAGATAGGTTTGAACTTATGAGATTCCTGTGTTGTTTAGTTGTTGATCTAACCAAAATGAACGCCACAAGCAATATGAATAATTTCTAACTAGGGAAATAGGTTTAAGAGTACAAACTTTGCCATGCGTCATGTACTTGGGATTTACATATTCCTAAAACTAACACACAAAAATGGTGCAGTGCATCTGTCAGTGTTAAAGTTCCTTTTTGTAGTATGAACAAGTAATGGATGCATTGTTCTCCTTGTATGACATTAACATATATGAATGAATTGAAGTGAGACAATAAGGTTTGGCACGACACACTTTAAAGGTTGCAGGTGGAATGTAACCATATGTTCATAGGTTCATAACAACTAGTTAGGGAGGTGTACCATATTACATATTATGGGAATATGGTCATTAATGTACAGTGTTTTAAGGTGTAGAATTCATTAATTTTTAAATCATATCAAGTAACACATTACTAACACGTTGTTTCATCTTCAGATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGGTATGGCCATGAGTAAAGTGTTTTTTTATGTCTTCACAGAGCATTTAGTCTATTATCTTTGCTATTTAGACATGTCAGTAATATTAAACTCCAATGGTAGGTCCTGTTTGGATAAACACCATAATTTGCAGCTTATATCATAAGCATTTATCATGATAAGCGCTTATGTATAACCTATTTCTATAAAAAGATAAAATAAAGTTAAGTTGTTTTTTTATAATCTATAAGATGTTCTCATAAGCTATCTTGGAGAGCTGATGAACATAAGCTGAAACAGCTTATGAACATGCCATAAGTTGTTTTCATAAGTTCTCACAAACAAACTCACAAGTGCTTATGTCAGTAGATAGCTCAAATAAGTCCATCCAAACAGGCCCCAACTTTGGTGTGCTGCTAAACTTGGTGGATCGTGTGGTGTTGTTACCTTGGACTTGGAGTTCCTTGGTTTTGTAAATACATGTTTTCATTTTTTCACTTCTAGCGTTTAAATTATTTTGACTCACTCTTTGATATTTCTATGTTTAATGCCAGAGCAGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGGTACTAATACTTTTTAACCCTACAATGGCAAAAGCCTTGATCTTTTACAAGAGCCTTAGTAGTAGAAACAGAAGCGTTGCATTGCCTGTTGCCTTATGCCCAATCTTCACCACCAGGTCTATTCGTAAATGAAAACATAAATCTATGCAAAGCTCTAGCAGACCATGTTTGACATCTTGTGACATAGTTATTACTGGTTTGGACACATTGCATATGCATGTTGATATCTGTTTAAGTTAGGCATTGTACATGTAATTTTATGGACTAAGCTATTTGTGCTTTTCTGCCATGCCAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCGCTACAACCCATGTGATTCCGGTATGCTATTTGCTTTATTAAGGATTTTATGGTAAAGACGAGATGGGATAGGATTAGAAATGACGATATTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGGGATAGCACCTATAGTTGAAAAGATGGTGGGAAATAAGCTTAGGATAGTTGAAAAGATGGTGGGAAATAAGCTTAGGTGGTTTGGACATGTCGAGAGAAGACCTATAGATTCTGTAATAAGGAGAGTAGATCAGATGGAGCATAGTCAGGTCAATAGACATAGAAAAACTATCAGAGTAACTATTAGGAAAGAGTTGGAAATTAATGAGTTGGACCGAAATATGGCTTATGATAGAACATTATGGTGTAATTTGATCCACGTAGCCGACCCCACTTAGTGGGAAAAGGTTTGGTTGTTGTTGTTGTTGCTTTATTTAAGGATTTTATATGTGAAGAAAATAAGTTTTCAATGTCTTATTGAAGATCATTATGACTGTGTCCTCACAGACAAACATTGTTAAAAAAACTGTAGGGGAAAAAATAAGTATAAAAAACTAAAATAAAAAATGGTATATTTTGTTTTATAAATTTTTAAATAAATAGGATGAATCATTTTCAATGGTCAGTTCTGCTGTTTTGCAGAGTTGCTTGTAGGAATTAGATGTCCTGCCAAATGTGTAAAGTGTTAATAATTATTTATAATTTCTAATATTCTTCATTTATTTTTTATATTTTCAGTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGTGAGTGTGAAATCATCCTGCTTTTGCTATTACCAAGCTAACCCCTAAATACGTACTATTTCTTACGTCTTATTAAATTCTCAATACAGGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGACTATGTTTCAGAAGCTCGATTGTTTCTGGTAAGAAATAGGTTCTTCTTCCCCGTCTAAGTTTTTCTACTGTTCCTAAGACTTATACGCCATTTAATGGTCTGGCAGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGGTTTGGAATTTCTTTTGAATCAACTTGGACATGTTCAAGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGGTGATTTTTTCTTTTTACAATTGTTTTTCTGTCACGTGCATTGTGAAATTGAACTCCCTGTCATCACACCCTTCAAATATGCTTGTAGCTTCTTTTTTTTTTTTTTTTGCTTGGATCCATTTGTGCTTATAGTCTTAATATCCAAATAATTTCTTAGAAAATTGTTTACTGTGGCTTGCAAAGTTGACAATGTTTGTTGGGTTTTGCTTTTTTGATAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGTATGTTCCATGCTTCAATTTATTCAAGCTTGATTAAAATTACTCTGTTACATATTCATGCGAGCAAGAGATGGTATTCAGCTTAGTGAAATGGGAAAATTTAAATATGTGTGTGTGTGAGTGAGTGAGAGAGAGAGAGAGAGAGAGCAATCATCTGTCTAGTTTAAGCTTACTAAGTTCCTTAATGGGGGAGAGAAAACTGGCTAAATCTTTAGGACAAGGCTTTTGTACAAAGCATGCACGACTTCAATCTTGACAAGGCTTGAATACTTCTAAATAATTAGTAGTGATTTTTTATGCTTTAAAATGTTTCTGATTGGTTTCTTTGGACATTCTTAACATAGGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTTTGACAGGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGTTAGGTCGAGTCTTTTATAATGTGGAACCTAACCTAAAATTAGCCGTGTTGTGTGTATGTGTTGGTATGGTTATTGTAGATTTCCTTGTATCAAAGAACTCTCATGACTAAAAAATCCTGTTGATATGTTGGTTTGGTAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA
Protein sequence

>MS.gene008177.t1

MPFISKIQRQSDYNRFSSTTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHVQESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSLTGSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL