Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008317.t1 | XP_003600668.2 | 98.2 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 1.60E-287 | 998 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008317.t1 | Q6P2Z6 | 45.9 | 499 | 249 | 10 | 21 | 509 | 13 | 500 | 6.3e-120 | 432.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008317.t1 | G7J8P2 | 98.2 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 1.1e-287 | 998.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021568 | MS.gene008317 | PPI |
| MS.gene54064 | MS.gene008317 | PPI |
| MS.gene86289 | MS.gene008317 | PPI |
| MS.gene015887 | MS.gene008317 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008317.t1 | MTR_3g064880 | 98.239 | 511 | 8 | 1 | 7 | 516 | 1 | 511 | 0.0 | 1045 |
| MS.gene008317.t1 | MTR_4g107030 | 71.398 | 465 | 72 | 7 | 1 | 455 | 1 | 414 | 0.0 | 655 |
| MS.gene008317.t1 | MTR_5g091890 | 59.901 | 404 | 157 | 3 | 19 | 420 | 14 | 414 | 2.48e-171 | 492 |
| MS.gene008317.t1 | MTR_5g089690 | 37.158 | 366 | 169 | 11 | 164 | 496 | 5 | 342 | 2.32e-58 | 197 |
| MS.gene008317.t1 | MTR_5g090460 | 37.758 | 339 | 166 | 11 | 171 | 493 | 23 | 332 | 8.76e-58 | 196 |
| MS.gene008317.t1 | MTR_5g091160 | 36.565 | 361 | 177 | 9 | 164 | 496 | 5 | 341 | 7.00e-57 | 193 |
| MS.gene008317.t1 | MTR_5g090030 | 41.007 | 278 | 138 | 5 | 219 | 493 | 23 | 277 | 3.58e-54 | 184 |
| MS.gene008317.t1 | MTR_5g011640 | 33.511 | 376 | 178 | 13 | 164 | 496 | 5 | 351 | 6.09e-50 | 175 |
| MS.gene008317.t1 | MTR_5g011470 | 33.511 | 376 | 178 | 13 | 164 | 496 | 5 | 351 | 6.62e-50 | 175 |
| MS.gene008317.t1 | MTR_5g006990 | 34.511 | 368 | 167 | 11 | 164 | 496 | 5 | 333 | 1.29e-49 | 174 |
| MS.gene008317.t1 | MTR_5g008620 | 36.728 | 324 | 141 | 10 | 164 | 462 | 5 | 289 | 3.10e-48 | 169 |
| MS.gene008317.t1 | MTR_5g092540 | 39.777 | 269 | 123 | 7 | 250 | 496 | 8 | 259 | 7.19e-48 | 167 |
| MS.gene008317.t1 | MTR_5g091490 | 34.181 | 354 | 159 | 11 | 171 | 496 | 15 | 322 | 6.52e-46 | 163 |
| MS.gene008317.t1 | MTR_8g442440 | 65.079 | 63 | 22 | 0 | 244 | 306 | 7 | 69 | 2.21e-21 | 89.0 |
| MS.gene008317.t1 | MTR_4g069000 | 32.778 | 180 | 79 | 4 | 312 | 463 | 31 | 196 | 1.90e-19 | 87.4 |
| MS.gene008317.t1 | MTR_0001s0160 | 73.684 | 38 | 10 | 0 | 257 | 294 | 40 | 77 | 1.37e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008317.t1 | AT2G03820 | 63.725 | 510 | 165 | 6 | 5 | 503 | 1 | 501 | 0.0 | 688 |
Find 111 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAAGCTGCTGCAATTT+TGG | 0.076449 | 3.1:+54358647 | MS.gene008317:CDS |
| TACCTTGAAGTTTGGTTTCT+TGG | 0.178636 | 3.1:+54358734 | MS.gene008317:CDS |
| TAGTAAATGCTGAGTTTATT+TGG | 0.211516 | 3.1:+54358154 | MS.gene008317:CDS |
| GTGGCCCGTGTGTCTGATTT+TGG | 0.235353 | 3.1:+54358897 | MS.gene008317:CDS |
| CCCAAAATTGCAGCAGCTTT+AGG | 0.260285 | 3.1:-54358648 | None:intergenic |
| CCATGGGATGAGTTGCTAAC+TGG | 0.267306 | 3.1:+54359305 | MS.gene008317:CDS |
| TTATCACTGCGACTCTTAAC+AGG | 0.272759 | 3.1:-54358522 | None:intergenic |
| GATATGTTGAACCGCAATTC+AGG | 0.276469 | 3.1:-54359209 | None:intergenic |
| TTCTTTATCAAAACCACTTC+AGG | 0.282795 | 3.1:-54359053 | None:intergenic |
| ATGGTTTATAGTCTTTATTT+TGG | 0.301402 | 3.1:-54359238 | None:intergenic |
| CGCCGTGATAAACTTCCTTC+TGG | 0.311357 | 3.1:-54358218 | None:intergenic |
| AACCTTGACTTTAACCCTCT+TGG | 0.339925 | 3.1:-54358190 | None:intergenic |
| AATTAAATCCTCACGACAAA+TGG | 0.343202 | 3.1:-54358616 | None:intergenic |
| CCCTGTTGAGTATGTTCAAC+AGG | 0.344627 | 3.1:+54358260 | MS.gene008317:CDS |
| ACAAAACACTGCCAATTGTT+TGG | 0.344709 | 3.1:-54357891 | None:intergenic |
| GCAGCTCCTTTGATTCTAAC+TGG | 0.347422 | 3.1:-54358077 | None:intergenic |
| ATTTGGAGCAGCTAATTCTA+AGG | 0.357779 | 3.1:+54358385 | MS.gene008317:CDS |
| GATCCACTTACCTTGAAGTT+TGG | 0.358412 | 3.1:+54358726 | MS.gene008317:CDS |
| ACACACATATTGGCTGCATT+TGG | 0.372787 | 3.1:-54357940 | None:intergenic |
| CAAACACTTCACACACATAT+TGG | 0.375834 | 3.1:-54357950 | None:intergenic |
| ATCAAGTTTGTTGAATTTGT+AGG | 0.382573 | 3.1:+54358489 | MS.gene008317:CDS |
| TCCTGTTGAACATACTCAAC+AGG | 0.387045 | 3.1:-54358261 | None:intergenic |
| GCTAGTAAGTAAAGACTTGA+AGG | 0.390432 | 3.1:-54358781 | None:intergenic |
| ATTAAATCCTCACGACAAAT+GGG | 0.404273 | 3.1:-54358615 | None:intergenic |
| GAAGAATATGAATATCAATA+AGG | 0.410544 | 3.1:+54358125 | MS.gene008317:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.411072 | 3.1:+54358046 | MS.gene008317:CDS |
| CATGGGATGAGTTGCTAACT+GGG | 0.414115 | 3.1:+54359306 | MS.gene008317:CDS |
| TCTTGGATGCTGAGCAGTAT+TGG | 0.423394 | 3.1:+54358751 | MS.gene008317:CDS |
| ACAGCAGCAATCCACTGATC+AGG | 0.432686 | 3.1:-54358321 | None:intergenic |
| TTTCTGTTCCTTATCATGTC+AGG | 0.434996 | 3.1:+54357826 | None:intergenic |
| CAACAGTAATGACATGGAAT+TGG | 0.439795 | 3.1:+54359010 | MS.gene008317:CDS |
| TCAAGTTTGTTGAATTTGTA+GGG | 0.441152 | 3.1:+54358490 | MS.gene008317:CDS |
| TTCATGGTTCACCAAACAAT+TGG | 0.446829 | 3.1:+54357880 | MS.gene008317:CDS |
| ATCCAAGAAACCAAACTTCA+AGG | 0.453254 | 3.1:-54358736 | None:intergenic |
| AAGCCTGGTGACAATGCTCT+TGG | 0.459127 | 3.1:+54358969 | MS.gene008317:CDS |
| TGTCACCAGGCTTTAAAAGA+TGG | 0.462708 | 3.1:-54358959 | None:intergenic |
| TGGAGTTTGACCCAAGTTCT+CGG | 0.467638 | 3.1:-54358057 | None:intergenic |
| GGAAGGTTTACTTAAGCGTC+TGG | 0.468817 | 3.1:+54357993 | MS.gene008317:CDS |
| ACAAGAAGCCGGTATGTTCA+TGG | 0.472887 | 3.1:+54357864 | MS.gene008317:CDS |
| TCAGGCAACATGTCTCTCAT+AGG | 0.480355 | 3.1:+54358349 | MS.gene008317:CDS |
| AAGAGGCACCTTCTGTTCCA+TGG | 0.487115 | 3.1:+54359288 | MS.gene008317:CDS |
| AAACCAAACTTCAAGGTAAG+TGG | 0.487609 | 3.1:-54358729 | None:intergenic |
| AATCTTATCATCAGCCTCCA+TGG | 0.489948 | 3.1:-54359123 | None:intergenic |
| ACCTTCGTGCAAATCACAAT+AGG | 0.493803 | 3.1:-54358681 | None:intergenic |
| ACATGTGTGAATCTTGCTCT+AGG | 0.495050 | 3.1:+54358286 | MS.gene008317:CDS |
| ATATGTTGAACCGCAATTCA+GGG | 0.495410 | 3.1:-54359208 | None:intergenic |
| GGATTGCTGCTGTGCAACTC+AGG | 0.500369 | 3.1:+54358331 | MS.gene008317:CDS |
| CAATTCCATGTCATTACTGT+TGG | 0.507714 | 3.1:-54359009 | None:intergenic |
| ACTTTAACCCTCTTGGAATG+TGG | 0.508963 | 3.1:-54358183 | None:intergenic |
| TTCCAAGAGGGTTAAAGTCA+AGG | 0.516159 | 3.1:+54358188 | MS.gene008317:CDS |
| CAAAGGAAATATTCCTGAAG+TGG | 0.521150 | 3.1:+54359040 | MS.gene008317:CDS |
| CAAACTCCAGTTAGAATCAA+AGG | 0.528303 | 3.1:+54358071 | MS.gene008317:CDS |
| ATCTTATCATCAGCCTCCAT+GGG | 0.529967 | 3.1:-54359122 | None:intergenic |
| ACTTACTAGCAGACAGTTGG+TGG | 0.535891 | 3.1:+54358794 | MS.gene008317:CDS |
| GTCACAGCTGCCACGTCTGA+TGG | 0.541653 | 3.1:-54359257 | None:intergenic |
| GTTTCATCTGAGGTTAATGT+CGG | 0.547286 | 3.1:+54358843 | MS.gene008317:CDS |
| TGCTATCAGAATCAAACAGA+TGG | 0.550633 | 3.1:+54358425 | MS.gene008317:CDS |
| TTTACTTACTAGCAGACAGT+TGG | 0.553886 | 3.1:+54358791 | MS.gene008317:CDS |
| GGAGTATATAGTGTTGGATG+TGG | 0.554292 | 3.1:+54358815 | MS.gene008317:CDS |
| GTTGGTGGAGTATATAGTGT+TGG | 0.555889 | 3.1:+54358809 | MS.gene008317:CDS |
| AGTCAAGGTTAGTGTCCAGA+AGG | 0.557071 | 3.1:+54358203 | MS.gene008317:CDS |
| TGGATGCTGAGCAGTATTGG+AGG | 0.562084 | 3.1:+54358754 | MS.gene008317:CDS |
| AACTCATCCCATGGAACAGA+AGG | 0.564055 | 3.1:-54359296 | None:intergenic |
| TATTTCTCTAATCGAAGTCA+TGG | 0.564179 | 3.1:+54358465 | MS.gene008317:CDS |
| TCCTATTGTGATTTGCACGA+AGG | 0.565272 | 3.1:+54358680 | MS.gene008317:CDS |
| AAAATTGCAGCAGCTTTAGG+AGG | 0.569697 | 3.1:-54358645 | None:intergenic |
| TCATCTGAGGTTAATGTCGG+TGG | 0.574369 | 3.1:+54358846 | MS.gene008317:CDS |
| TTAGAGATGGCACAAGAAGC+CGG | 0.574855 | 3.1:+54357853 | MS.gene008317:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.577871 | 3.1:+54358047 | MS.gene008317:CDS |
| TCTTGACCTGAGTGAGGGTG+AGG | 0.578174 | 3.1:+54359337 | MS.gene008317:CDS |
| CATGTCAGGCGTATTAGAGA+TGG | 0.579085 | 3.1:+54357840 | None:intergenic |
| TGAAGATCTTGACCTGAGTG+AGG | 0.582777 | 3.1:+54359331 | MS.gene008317:CDS |
| TGTCGATGGCGAGGATAACA+TGG | 0.582977 | 3.1:+54359361 | MS.gene008317:CDS |
| GTAATGACATGGAATTGGAC+AGG | 0.584948 | 3.1:+54359015 | MS.gene008317:CDS |
| AGAGGCACCTTCTGTTCCAT+GGG | 0.589082 | 3.1:+54359289 | MS.gene008317:CDS |
| TAACCAAGAGCATTGTCACC+AGG | 0.592121 | 3.1:-54358972 | None:intergenic |
| GCGCTCAGAAGTTGATATCA+CGG | 0.594697 | 3.1:+54357972 | MS.gene008317:CDS |
| TATCACTGCGACTCTTAACA+GGG | 0.596274 | 3.1:-54358521 | None:intergenic |
| CAGCAGCAATCCACTGATCA+GGG | 0.600518 | 3.1:-54358320 | None:intergenic |
| AGTGAGGGTGAGGGTGTCGA+TGG | 0.601288 | 3.1:+54359347 | MS.gene008317:CDS |
| TCAGAAGTTGATATCACGGA+AGG | 0.605980 | 3.1:+54357976 | MS.gene008317:CDS |
| TGCAAGTAACTTTCACACTC+AGG | 0.606381 | 3.1:-54358030 | None:intergenic |
| TAAGCTTAGACGAATTCCCA+TGG | 0.606545 | 3.1:+54359106 | MS.gene008317:CDS |
| TTGGTGAACCATGAACATAC+CGG | 0.608208 | 3.1:-54357872 | None:intergenic |
| TGTGGAAGTTGTTTCATCTG+AGG | 0.609866 | 3.1:+54358833 | MS.gene008317:CDS |
| CGACACCCTCACCCTCACTC+AGG | 0.612193 | 3.1:-54359343 | None:intergenic |
| GACAGAGCCACATTCCAAGA+GGG | 0.613937 | 3.1:+54358176 | MS.gene008317:CDS |
| GACGTGGCAGCTGTGACTGA+TGG | 0.615734 | 3.1:+54359263 | MS.gene008317:CDS |
| CATGTGTGAATCTTGCTCTA+GGG | 0.616216 | 3.1:+54358287 | MS.gene008317:CDS |
| GGGTGAGGGTGTCGATGGCG+AGG | 0.617303 | 3.1:+54359352 | MS.gene008317:CDS |
| ATGGAATTGGACAGGTACAA+AGG | 0.618324 | 3.1:+54359023 | MS.gene008317:CDS |
| GTCCAGAAGGAAGTTTATCA+CGG | 0.623633 | 3.1:+54358216 | MS.gene008317:CDS |
| TTGCAGCTAACCCTGATCAG+TGG | 0.627759 | 3.1:+54358310 | MS.gene008317:CDS |
| AATCAGCCCCATTTGTCGTG+AGG | 0.628298 | 3.1:+54358608 | MS.gene008317:CDS |
| AGAATCAAACAGATGGATCA+CGG | 0.628536 | 3.1:+54358432 | MS.gene008317:CDS |
| GAGCAGCTAATTCTAAGGCA+TGG | 0.629905 | 3.1:+54358390 | MS.gene008317:CDS |
| TCTTTCCAAAATCAGACACA+CGG | 0.630186 | 3.1:-54358902 | None:intergenic |
| CCTGTTGAACATACTCAACA+GGG | 0.631414 | 3.1:-54358260 | None:intergenic |
| CCAGTTAGCAACTCATCCCA+TGG | 0.635935 | 3.1:-54359305 | None:intergenic |
| AGCTGTGACTGATGGTGAAG+AGG | 0.640796 | 3.1:+54359271 | MS.gene008317:CDS |
| GAAGATCTTGACCTGAGTGA+GGG | 0.645915 | 3.1:+54359332 | MS.gene008317:CDS |
| CTTGACCTGAGTGAGGGTGA+GGG | 0.653576 | 3.1:+54359338 | MS.gene008317:CDS |
| TTAAATCCTCACGACAAATG+GGG | 0.655192 | 3.1:-54358614 | None:intergenic |
| TGCTGCCAACAGTAATGACA+TGG | 0.662782 | 3.1:+54359004 | MS.gene008317:CDS |
| GGACAGAGCCACATTCCAAG+AGG | 0.662883 | 3.1:+54358175 | MS.gene008317:CDS |
| CTTTCCAAAATCAGACACAC+GGG | 0.666389 | 3.1:-54358901 | None:intergenic |
| TAGAAGAAAACCCTGAATTG+CGG | 0.680446 | 3.1:+54359198 | MS.gene008317:CDS |
| AGTTTGACCCAAGTTCTCGG+TGG | 0.706073 | 3.1:-54358054 | None:intergenic |
| AGACTATAAACCATCAGACG+TGG | 0.707099 | 3.1:+54359247 | MS.gene008317:CDS |
| ATCACTGCGACTCTTAACAG+GGG | 0.736254 | 3.1:-54358520 | None:intergenic |
| GCTTAGACGAATTCCCATGG+AGG | 0.746816 | 3.1:+54359109 | MS.gene008317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAATATGAATATCAATA+AGG | + | chr3.1:54358125-54358144 | MS.gene008317:CDS | 20.0% |
| !!! | ATGGTTTATAGTCTTTATTT+TGG | - | chr3.1:54359241-54359260 | None:intergenic | 20.0% |
| ! | TAGTAAATGCTGAGTTTATT+TGG | + | chr3.1:54358154-54358173 | MS.gene008317:CDS | 25.0% |
| !! | TTATAAGTACACATTTTCTG+TGG | + | chr3.1:54358584-54358603 | MS.gene008317:CDS | 25.0% |
| !! | TTTTCTATCAGAACTCATTT+GGG | + | chr3.1:54358936-54358955 | MS.gene008317:CDS | 25.0% |
| !!! | ATCAAGTTTGTTGAATTTGT+AGG | + | chr3.1:54358489-54358508 | MS.gene008317:CDS | 25.0% |
| !!! | TCAAGTTTGTTGAATTTGTA+GGG | + | chr3.1:54358490-54358509 | MS.gene008317:CDS | 25.0% |
| AATTAAATCCTCACGACAAA+TGG | - | chr3.1:54358619-54358638 | None:intergenic | 30.0% | |
| ATTAAATCCTCACGACAAAT+GGG | - | chr3.1:54358618-54358637 | None:intergenic | 30.0% | |
| TATTTCTCTAATCGAAGTCA+TGG | + | chr3.1:54358465-54358484 | MS.gene008317:CDS | 30.0% | |
| TTCTTTATCAAAACCACTTC+AGG | - | chr3.1:54359056-54359075 | None:intergenic | 30.0% | |
| ! | GTTTTCTATCAGAACTCATT+TGG | + | chr3.1:54358935-54358954 | MS.gene008317:CDS | 30.0% |
| !! | TAGGCGTACTTTTTACTATT+TGG | + | chr3.1:54358368-54358387 | MS.gene008317:CDS | 30.0% |
| AAACCAAACTTCAAGGTAAG+TGG | - | chr3.1:54358732-54358751 | None:intergenic | 35.0% | |
| ACAAAACACTGCCAATTGTT+TGG | - | chr3.1:54357894-54357913 | None:intergenic | 35.0% | |
| AGAATCAAACAGATGGATCA+CGG | + | chr3.1:54358432-54358451 | MS.gene008317:CDS | 35.0% | |
| ATATGTTGAACCGCAATTCA+GGG | - | chr3.1:54359211-54359230 | None:intergenic | 35.0% | |
| ATCCAAGAAACCAAACTTCA+AGG | - | chr3.1:54358739-54358758 | None:intergenic | 35.0% | |
| CAAACACTTCACACACATAT+TGG | - | chr3.1:54357953-54357972 | None:intergenic | 35.0% | |
| CAAACTCCAGTTAGAATCAA+AGG | + | chr3.1:54358071-54358090 | MS.gene008317:CDS | 35.0% | |
| CAAAGGAAATATTCCTGAAG+TGG | + | chr3.1:54359040-54359059 | MS.gene008317:CDS | 35.0% | |
| CAACAGTAATGACATGGAAT+TGG | + | chr3.1:54359010-54359029 | MS.gene008317:CDS | 35.0% | |
| CAATTCCATGTCATTACTGT+TGG | - | chr3.1:54359012-54359031 | None:intergenic | 35.0% | |
| GCTAGTAAGTAAAGACTTGA+AGG | - | chr3.1:54358784-54358803 | None:intergenic | 35.0% | |
| TAGAAGAAAACCCTGAATTG+CGG | + | chr3.1:54359198-54359217 | MS.gene008317:CDS | 35.0% | |
| TCTTTCCAAAATCAGACACA+CGG | - | chr3.1:54358905-54358924 | None:intergenic | 35.0% | |
| TGCTATCAGAATCAAACAGA+TGG | + | chr3.1:54358425-54358444 | MS.gene008317:CDS | 35.0% | |
| TTAAATCCTCACGACAAATG+GGG | - | chr3.1:54358617-54358636 | None:intergenic | 35.0% | |
| TTCATGGTTCACCAAACAAT+TGG | + | chr3.1:54357880-54357899 | MS.gene008317:CDS | 35.0% | |
| TTTACTTACTAGCAGACAGT+TGG | + | chr3.1:54358791-54358810 | MS.gene008317:CDS | 35.0% | |
| ! | AGTGTTTTGTGTTGCAAATG+TGG | + | chr3.1:54357904-54357923 | MS.gene008317:CDS | 35.0% |
| ! | ATTTGGAGCAGCTAATTCTA+AGG | + | chr3.1:54358385-54358404 | MS.gene008317:CDS | 35.0% |
| ! | GTGTTTTGTGTTGCAAATGT+GGG | + | chr3.1:54357905-54357924 | MS.gene008317:CDS | 35.0% |
| ! | GTTTCATCTGAGGTTAATGT+CGG | + | chr3.1:54358843-54358862 | MS.gene008317:CDS | 35.0% |
| ! | TACCTTGAAGTTTGGTTTCT+TGG | + | chr3.1:54358734-54358753 | MS.gene008317:CDS | 35.0% |
| !! | GCTGCAATTTTGGGAAATAT+CGG | + | chr3.1:54358657-54358676 | MS.gene008317:CDS | 35.0% |
| AACCTTGACTTTAACCCTCT+TGG | - | chr3.1:54358193-54358212 | None:intergenic | 40.0% | |
| AATCTTATCATCAGCCTCCA+TGG | - | chr3.1:54359126-54359145 | None:intergenic | 40.0% | |
| ACATGTGTGAATCTTGCTCT+AGG | + | chr3.1:54358286-54358305 | MS.gene008317:CDS | 40.0% | |
| ACCTTCGTGCAAATCACAAT+AGG | - | chr3.1:54358684-54358703 | None:intergenic | 40.0% | |
| ACTTTAACCCTCTTGGAATG+TGG | - | chr3.1:54358186-54358205 | None:intergenic | 40.0% | |
| AGACTATAAACCATCAGACG+TGG | + | chr3.1:54359247-54359266 | MS.gene008317:CDS | 40.0% | |
| ATCTTATCATCAGCCTCCAT+GGG | - | chr3.1:54359125-54359144 | None:intergenic | 40.0% | |
| ATGGAATTGGACAGGTACAA+AGG | + | chr3.1:54359023-54359042 | MS.gene008317:CDS | 40.0% | |
| CATGTGTGAATCTTGCTCTA+GGG | + | chr3.1:54358287-54358306 | MS.gene008317:CDS | 40.0% | |
| CCTGTTGAACATACTCAACA+GGG | - | chr3.1:54358263-54358282 | None:intergenic | 40.0% | |
| CTTTCCAAAATCAGACACAC+GGG | - | chr3.1:54358904-54358923 | None:intergenic | 40.0% | |
| GATATGTTGAACCGCAATTC+AGG | - | chr3.1:54359212-54359231 | None:intergenic | 40.0% | |
| GATCCACTTACCTTGAAGTT+TGG | + | chr3.1:54358726-54358745 | MS.gene008317:CDS | 40.0% | |
| GTAATGACATGGAATTGGAC+AGG | + | chr3.1:54359015-54359034 | MS.gene008317:CDS | 40.0% | |
| GTCCAGAAGGAAGTTTATCA+CGG | + | chr3.1:54358216-54358235 | MS.gene008317:CDS | 40.0% | |
| TAAGCTTAGACGAATTCCCA+TGG | + | chr3.1:54359106-54359125 | MS.gene008317:CDS | 40.0% | |
| TATCACTGCGACTCTTAACA+GGG | - | chr3.1:54358524-54358543 | None:intergenic | 40.0% | |
| TCCTGTTGAACATACTCAAC+AGG | - | chr3.1:54358264-54358283 | None:intergenic | 40.0% | |
| TGCAAGTAACTTTCACACTC+AGG | - | chr3.1:54358033-54358052 | None:intergenic | 40.0% | |
| TTATCACTGCGACTCTTAAC+AGG | - | chr3.1:54358525-54358544 | None:intergenic | 40.0% | |
| TTCCAAGAGGGTTAAAGTCA+AGG | + | chr3.1:54358188-54358207 | MS.gene008317:CDS | 40.0% | |
| TTGGTGAACCATGAACATAC+CGG | - | chr3.1:54357875-54357894 | None:intergenic | 40.0% | |
| ! | ACACACATATTGGCTGCATT+TGG | - | chr3.1:54357943-54357962 | None:intergenic | 40.0% |
| ! | CCTAAAGCTGCTGCAATTTT+GGG | + | chr3.1:54358648-54358667 | MS.gene008317:CDS | 40.0% |
| ! | GGAGTATATAGTGTTGGATG+TGG | + | chr3.1:54358815-54358834 | MS.gene008317:CDS | 40.0% |
| ! | GTTGGTGGAGTATATAGTGT+TGG | + | chr3.1:54358809-54358828 | MS.gene008317:CDS | 40.0% |
| ! | TCCTAAAGCTGCTGCAATTT+TGG | + | chr3.1:54358647-54358666 | MS.gene008317:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACGA+AGG | + | chr3.1:54358680-54358699 | MS.gene008317:CDS | 40.0% |
| ! | TGTGGAAGTTGTTTCATCTG+AGG | + | chr3.1:54358833-54358852 | MS.gene008317:CDS | 40.0% |
| !! | AAAATTGCAGCAGCTTTAGG+AGG | - | chr3.1:54358648-54358667 | None:intergenic | 40.0% |
| !! | TCAGAAGTTGATATCACGGA+AGG | + | chr3.1:54357976-54357995 | MS.gene008317:CDS | 40.0% |
| !! | TGTCACCAGGCTTTAAAAGA+TGG | - | chr3.1:54358962-54358981 | None:intergenic | 40.0% |
| !!! | TGTTTTAGCTGATGCTCAAG+TGG | + | chr3.1:54358878-54358897 | MS.gene008317:CDS | 40.0% |
| AACTCATCCCATGGAACAGA+AGG | - | chr3.1:54359299-54359318 | None:intergenic | 45.0% | |
| ACAAGAAGCCGGTATGTTCA+TGG | + | chr3.1:54357864-54357883 | MS.gene008317:CDS | 45.0% | |
| ACTTACTAGCAGACAGTTGG+TGG | + | chr3.1:54358794-54358813 | MS.gene008317:CDS | 45.0% | |
| AGTCAAGGTTAGTGTCCAGA+AGG | + | chr3.1:54358203-54358222 | MS.gene008317:CDS | 45.0% | |
| ATCACTGCGACTCTTAACAG+GGG | - | chr3.1:54358523-54358542 | None:intergenic | 45.0% | |
| CATGGGATGAGTTGCTAACT+GGG | + | chr3.1:54359306-54359325 | MS.gene008317:CDS | 45.0% | |
| CCCAAAATTGCAGCAGCTTT+AGG | - | chr3.1:54358651-54358670 | None:intergenic | 45.0% | |
| CCCTGTTGAGTATGTTCAAC+AGG | + | chr3.1:54358260-54358279 | MS.gene008317:CDS | 45.0% | |
| GAAGATCTTGACCTGAGTGA+GGG | + | chr3.1:54359332-54359351 | MS.gene008317:CDS | 45.0% | |
| GCAGCTCCTTTGATTCTAAC+TGG | - | chr3.1:54358080-54358099 | None:intergenic | 45.0% | |
| GGAAGGTTTACTTAAGCGTC+TGG | + | chr3.1:54357993-54358012 | MS.gene008317:CDS | 45.0% | |
| TCAGGCAACATGTCTCTCAT+AGG | + | chr3.1:54358349-54358368 | MS.gene008317:CDS | 45.0% | |
| TCTTGGATGCTGAGCAGTAT+TGG | + | chr3.1:54358751-54358770 | MS.gene008317:CDS | 45.0% | |
| TGAAGATCTTGACCTGAGTG+AGG | + | chr3.1:54359331-54359350 | MS.gene008317:CDS | 45.0% | |
| TGCTGCCAACAGTAATGACA+TGG | + | chr3.1:54359004-54359023 | MS.gene008317:CDS | 45.0% | |
| TGGAGTTTGACCCAAGTTCT+CGG | - | chr3.1:54358060-54358079 | None:intergenic | 45.0% | |
| TTAGAGATGGCACAAGAAGC+CGG | + | chr3.1:54357853-54357872 | MS.gene008317:CDS | 45.0% | |
| ! | TCATCTGAGGTTAATGTCGG+TGG | + | chr3.1:54358846-54358865 | MS.gene008317:CDS | 45.0% |
| !! | GAGCAGCTAATTCTAAGGCA+TGG | + | chr3.1:54358390-54358409 | MS.gene008317:CDS | 45.0% |
| !! | GCGCTCAGAAGTTGATATCA+CGG | + | chr3.1:54357972-54357991 | MS.gene008317:CDS | 45.0% |
| !! | TAACCAAGAGCATTGTCACC+AGG | - | chr3.1:54358975-54358994 | None:intergenic | 45.0% |
| !!! | TTGGGCCATCTTTTAAAGCC+TGG | + | chr3.1:54358954-54358973 | MS.gene008317:CDS | 45.0% |
| AAGCCTGGTGACAATGCTCT+TGG | + | chr3.1:54358969-54358988 | MS.gene008317:CDS | 50.0% | |
| AATCAGCCCCATTTGTCGTG+AGG | + | chr3.1:54358608-54358627 | MS.gene008317:CDS | 50.0% | |
| ACAGCAGCAATCCACTGATC+AGG | - | chr3.1:54358324-54358343 | None:intergenic | 50.0% | |
| AGTTTGACCCAAGTTCTCGG+TGG | - | chr3.1:54358057-54358076 | None:intergenic | 50.0% | |
| CAGCAGCAATCCACTGATCA+GGG | - | chr3.1:54358323-54358342 | None:intergenic | 50.0% | |
| CCAGTTAGCAACTCATCCCA+TGG | - | chr3.1:54359308-54359327 | None:intergenic | 50.0% | |
| CCATGGGATGAGTTGCTAAC+TGG | + | chr3.1:54359305-54359324 | MS.gene008317:CDS | 50.0% | |
| CGCCGTGATAAACTTCCTTC+TGG | - | chr3.1:54358221-54358240 | None:intergenic | 50.0% | |
| GACAGAGCCACATTCCAAGA+GGG | + | chr3.1:54358176-54358195 | MS.gene008317:CDS | 50.0% | |
| GCTTAGACGAATTCCCATGG+AGG | + | chr3.1:54359109-54359128 | MS.gene008317:CDS | 50.0% | |
| TGTCGATGGCGAGGATAACA+TGG | + | chr3.1:54359361-54359380 | MS.gene008317:CDS | 50.0% | |
| TTGCAGCTAACCCTGATCAG+TGG | + | chr3.1:54358310-54358329 | MS.gene008317:CDS | 50.0% | |
| ! | AGCTGTGACTGATGGTGAAG+AGG | + | chr3.1:54359271-54359290 | MS.gene008317:CDS | 50.0% |
| ! | TGGATGCTGAGCAGTATTGG+AGG | + | chr3.1:54358754-54358773 | MS.gene008317:CDS | 50.0% |
| !! | AAGAGGCACCTTCTGTTCCA+TGG | + | chr3.1:54359288-54359307 | MS.gene008317:CDS | 50.0% |
| !! | AGAGGCACCTTCTGTTCCAT+GGG | + | chr3.1:54359289-54359308 | MS.gene008317:CDS | 50.0% |
| ACTTGCAGCCACCGAGAACT+TGG | + | chr3.1:54358046-54358065 | MS.gene008317:CDS | 55.0% | |
| CTTGACCTGAGTGAGGGTGA+GGG | + | chr3.1:54359338-54359357 | MS.gene008317:CDS | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | + | chr3.1:54358047-54358066 | MS.gene008317:CDS | 55.0% | |
| GGACAGAGCCACATTCCAAG+AGG | + | chr3.1:54358175-54358194 | MS.gene008317:CDS | 55.0% | |
| GGATTGCTGCTGTGCAACTC+AGG | + | chr3.1:54358331-54358350 | MS.gene008317:CDS | 55.0% | |
| TCTTGACCTGAGTGAGGGTG+AGG | + | chr3.1:54359337-54359356 | MS.gene008317:CDS | 55.0% | |
| ! | GTGGCCCGTGTGTCTGATTT+TGG | + | chr3.1:54358897-54358916 | MS.gene008317:CDS | 55.0% |
| GACGTGGCAGCTGTGACTGA+TGG | + | chr3.1:54359263-54359282 | MS.gene008317:CDS | 60.0% | |
| GTCACAGCTGCCACGTCTGA+TGG | - | chr3.1:54359260-54359279 | None:intergenic | 60.0% | |
| !! | AGTGAGGGTGAGGGTGTCGA+TGG | + | chr3.1:54359347-54359366 | MS.gene008317:CDS | 60.0% |
| CGACACCCTCACCCTCACTC+AGG | - | chr3.1:54359346-54359365 | None:intergenic | 65.0% | |
| !! | GGGTGAGGGTGTCGATGGCG+AGG | + | chr3.1:54359352-54359371 | MS.gene008317:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54357841 | 54359391 | 54357841 | ID=MS.gene008317 |
| chr3.1 | mRNA | 54357841 | 54359391 | 54357841 | ID=MS.gene008317.t1;Parent=MS.gene008317 |
| chr3.1 | exon | 54357841 | 54359391 | 54357841 | ID=MS.gene008317.t1.exon1;Parent=MS.gene008317.t1 |
| chr3.1 | CDS | 54357841 | 54359391 | 54357841 | ID=cds.MS.gene008317.t1;Parent=MS.gene008317.t1 |
| Gene Sequence |
| Protein sequence |
