Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021568.t1 | RHN76819.1 | 98 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 1.20E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021568.t1 | Q8H1G5 | 61.4 | 412 | 149 | 3 | 1 | 410 | 1 | 404 | 6.3e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021568.t1 | A0A396JF03 | 98.0 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 8.6e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021568 | MS.gene05011 | PPI |
| MS.gene021568 | MS.gene008317 | PPI |
| MS.gene021568 | MS.gene61069 | PPI |
| MS.gene033230 | MS.gene021568 | PPI |
| MS.gene021568 | MS.gene049715 | PPI |
| MS.gene021568 | MS.gene54064 | PPI |
| MS.gene015887 | MS.gene021568 | PPI |
| MS.gene021568 | MS.gene60354 | PPI |
| MS.gene021568 | MS.gene48391 | PPI |
| MS.gene021568 | MS.gene015887 | PPI |
| MS.gene021568 | MS.gene86289 | PPI |
| MS.gene021568 | MS.gene061557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021568.t1 | MTR_1g009770 | 98.049 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 0.0 | 836 |
| MS.gene021568.t1 | MTR_1g047010 | 86.027 | 365 | 23 | 1 | 35 | 399 | 11 | 347 | 0.0 | 545 |
| MS.gene021568.t1 | MTR_5g061270 | 89.933 | 149 | 5 | 3 | 36 | 184 | 13 | 151 | 6.72e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene021568.t1 | AT4G31420 | 62.802 | 414 | 140 | 5 | 1 | 410 | 1 | 404 | 0.0 | 525 |
| MS.gene021568.t1 | AT4G31420 | 62.651 | 415 | 140 | 6 | 1 | 410 | 1 | 405 | 0.0 | 520 |
| MS.gene021568.t1 | AT2G24500 | 64.146 | 410 | 132 | 7 | 1 | 410 | 1 | 395 | 1.78e-180 | 508 |
Find 85 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGGTGGCTGGGGTTCC+TGG | 0.262196 | 1.4:-9969053 | MS.gene021568:intron |
| CATTGCCGTTACTGCGGAAT+TGG | 0.292956 | 1.4:-9967912 | MS.gene021568:CDS |
| TCACAATTTGCTGCCTTGAT+TGG | 0.324791 | 1.4:+9967736 | None:intergenic |
| TGACATTGTTTGGCAGGTTC+CGG | 0.326569 | 1.4:+9967634 | None:intergenic |
| GGCCCGCATCATATGAGTTC+TGG | 0.357386 | 1.4:+9968887 | None:intergenic |
| AATCACTGCAAGGTGCATTA+TGG | 0.365367 | 1.4:-9968299 | MS.gene021568:CDS |
| AAAGGACTCCTCACTTATCT+TGG | 0.381564 | 1.4:-9968495 | MS.gene021568:CDS |
| GACTAATATGTGACATTGTT+TGG | 0.402840 | 1.4:+9967624 | None:intergenic |
| GGGAAGCAGCTAGTTGTATC+AGG | 0.417132 | 1.4:-9968082 | MS.gene021568:CDS |
| CAGGTACAGGAGCATGGGTC+TGG | 0.422872 | 1.4:-9967766 | MS.gene021568:CDS |
| TTCACAACGCGTTGTGGAAG+TGG | 0.423028 | 1.4:+9968822 | None:intergenic |
| TCTTTCAAATACTCAACATC+TGG | 0.426978 | 1.4:+9968522 | None:intergenic |
| CGATGAGGAGGAAGTTGAGT+TGG | 0.431117 | 1.4:-9968267 | MS.gene021568:CDS |
| AATATGTGACATTGTTTGGC+AGG | 0.441386 | 1.4:+9967628 | None:intergenic |
| GATAATATCGCAAGTATTCA+CGG | 0.442099 | 1.4:+9967966 | None:intergenic |
| GAGCATATGCGTAGCAAGAT+GGG | 0.442807 | 1.4:-9967675 | MS.gene021568:CDS |
| GGTTGATTCTGATGATGATC+TGG | 0.452488 | 1.4:-9968730 | MS.gene021568:CDS |
| AGATAAGTGAGGAGTCCTTT+CGG | 0.464465 | 1.4:+9968498 | None:intergenic |
| CTCGTAATCACTAAGATGTC+TGG | 0.465514 | 1.4:-9968019 | MS.gene021568:CDS |
| TCAGCAGCTTGGAAGCAGTC+AGG | 0.483122 | 1.4:-9968340 | MS.gene021568:CDS |
| CTCTATAGCTGTGGCCTATG+TGG | 0.493641 | 1.4:-9968954 | MS.gene021568:CDS |
| GCAATGTTATTTGCTGCTGA+TGG | 0.493721 | 1.4:+9967929 | None:intergenic |
| AAGGACTCCTCACTTATCTT+GGG | 0.494172 | 1.4:-9968494 | MS.gene021568:CDS |
| ATCAGTTATGTTGATGAGCA+AGG | 0.498615 | 1.4:-9968103 | MS.gene021568:intron |
| GGAGCATATGCGTAGCAAGA+TGG | 0.510156 | 1.4:-9967676 | MS.gene021568:CDS |
| GTGTCATCCTTTCAGCAGCT+TGG | 0.510364 | 1.4:-9968351 | MS.gene021568:CDS |
| ATGATGACAGCGAAGATGAA+TGG | 0.513343 | 1.4:-9968758 | MS.gene021568:CDS |
| TTGAAGCAGATGAACAGATC+AGG | 0.519397 | 1.4:-9967702 | MS.gene021568:CDS |
| TTATTTGCTGCTGATGGGCG+TGG | 0.519564 | 1.4:+9967935 | None:intergenic |
| AACAATGCTTCTGTCACTCC+AGG | 0.527586 | 1.4:+9969035 | None:intergenic |
| CAAGGGATACAAAAGTGAAA+AGG | 0.530314 | 1.4:-9968931 | MS.gene021568:CDS |
| GGCCACAGCTATAGAGCATA+GGG | 0.531535 | 1.4:+9968961 | None:intergenic |
| AATTCTATGATTATACCAGC+AGG | 0.531778 | 1.4:-9968241 | MS.gene021568:intron |
| CAATGTTATTTGCTGCTGAT+GGG | 0.534127 | 1.4:+9967930 | None:intergenic |
| AGCTTCATTACAAATCTGAA+TGG | 0.537834 | 1.4:-9970361 | MS.gene021568:CDS |
| GTCTGGCCACTGTCCAATCA+AGG | 0.539255 | 1.4:-9967749 | MS.gene021568:CDS |
| GTTCATATGCACAAGCATCA+TGG | 0.541183 | 1.4:-9968555 | MS.gene021568:CDS |
| GGCTTGTTCACAACGCGTTG+TGG | 0.544393 | 1.4:+9968816 | None:intergenic |
| CCTCACTTATCTTGGGCTGA+AGG | 0.545136 | 1.4:-9968487 | MS.gene021568:intron |
| AATAATATAGAACTTAGTGA+TGG | 0.547640 | 1.4:-9968049 | MS.gene021568:CDS |
| GGATGAAGAGTAATGTGATC+CGG | 0.550803 | 1.4:-9967653 | MS.gene021568:CDS |
| AGATAGCCAGTCAGATGGGA+AGG | 0.554248 | 1.4:-9968856 | MS.gene021568:CDS |
| AGGCCACAGCTATAGAGCAT+AGG | 0.556759 | 1.4:+9968960 | None:intergenic |
| TTATAGCCTTCCCATCTGAC+TGG | 0.557046 | 1.4:+9968850 | None:intergenic |
| TGATGACAGCGAAGATGAAT+GGG | 0.559525 | 1.4:-9968757 | MS.gene021568:CDS |
| CATATGATGCGGGCCTCTGA+AGG | 0.561060 | 1.4:-9968879 | MS.gene021568:CDS |
| AAGGAGATAGCCAGTCAGAT+GGG | 0.563189 | 1.4:-9968860 | MS.gene021568:CDS |
| TAGCTGTGGCCTATGTGGCA+AGG | 0.563752 | 1.4:-9968949 | MS.gene021568:CDS |
| AGCTGTGGCCTATGTGGCAA+GGG | 0.564127 | 1.4:-9968948 | MS.gene021568:CDS |
| TCAGTTATGTTGATGAGCAA+GGG | 0.565263 | 1.4:-9968102 | MS.gene021568:intron |
| TGCAGCCAATTCCGCAGTAA+CGG | 0.565856 | 1.4:+9967907 | None:intergenic |
| GTCCAGAACTCATATGATGC+GGG | 0.567214 | 1.4:-9968889 | MS.gene021568:CDS |
| GAAGGAGATAGCCAGTCAGA+TGG | 0.569810 | 1.4:-9968861 | MS.gene021568:CDS |
| GTCCATGTTCATATCTGTCA+AGG | 0.582115 | 1.4:+9968689 | None:intergenic |
| ATAATATAGAACTTAGTGAT+GGG | 0.585912 | 1.4:-9968048 | MS.gene021568:CDS |
| AAGCTGCACTTGCTCAAGAG+AGG | 0.587647 | 1.4:-9969001 | MS.gene021568:CDS |
| ATAATATCGCAAGTATTCAC+GGG | 0.591542 | 1.4:+9967967 | None:intergenic |
| TTACTGCGGAATTGGCTGCA+AGG | 0.592515 | 1.4:-9967904 | MS.gene021568:intron |
| AGTTCTGGACTTAAGATGCT+CGG | 0.594295 | 1.4:+9968902 | None:intergenic |
| ACTGCTTCCAAGCTGCTGAA+AGG | 0.595871 | 1.4:+9968344 | None:intergenic |
| TGACTGGCTATCTCCTTCAG+AGG | 0.597575 | 1.4:+9968866 | None:intergenic |
| TGGTGATGATGACGATGAGG+AGG | 0.609158 | 1.4:-9968279 | MS.gene021568:CDS |
| AGCTGCACTTGCTCAAGAGA+GGG | 0.613236 | 1.4:-9969000 | MS.gene021568:CDS |
| GCAGATGAACAGATCAGGTG+TGG | 0.616562 | 1.4:-9967697 | MS.gene021568:CDS |
| TGTGTCTGTACTGCAACGAT+CGG | 0.620367 | 1.4:-9968373 | MS.gene021568:CDS |
| TGAGGATGATGATGATGGTG+TGG | 0.620914 | 1.4:-9968640 | MS.gene021568:CDS |
| CAAGCCTCCTCCTAAAAGAG+TGG | 0.623878 | 1.4:-9968799 | MS.gene021568:CDS |
| AGCCCTATGCTCTATAGCTG+TGG | 0.631941 | 1.4:-9968963 | MS.gene021568:CDS |
| TGAAAATGATGACATGGATG+AGG | 0.635872 | 1.4:-9968658 | MS.gene021568:CDS |
| TCGCTACAATCTCAAACGCA+AGG | 0.638657 | 1.4:-9970336 | MS.gene021568:intron |
| ATGGATGAGGATGATGATGA+TGG | 0.639127 | 1.4:-9968645 | MS.gene021568:CDS |
| AGTCCAGAACTCATATGATG+CGG | 0.639377 | 1.4:-9968890 | MS.gene021568:CDS |
| GAATGCTGAAAATGATGACA+TGG | 0.644358 | 1.4:-9968664 | MS.gene021568:CDS |
| AGCATATGCGTAGCAAGATG+GGG | 0.651281 | 1.4:-9967674 | MS.gene021568:CDS |
| AAATAACATTGCCGTTACTG+CGG | 0.661600 | 1.4:-9967918 | MS.gene021568:CDS |
| CAGCGAAGATGAATGGGTGG+AGG | 0.662429 | 1.4:-9968751 | MS.gene021568:CDS |
| CAAAACAATAGAAAACTGCA+TGG | 0.674368 | 1.4:-9968577 | MS.gene021568:CDS |
| TTGCTGCCTTGATTGGACAG+TGG | 0.675930 | 1.4:+9967743 | None:intergenic |
| CCTTCAGCCCAAGATAAGTG+AGG | 0.679666 | 1.4:+9968487 | None:intergenic |
| GAGTATTTGAAAGATCCGAA+AGG | 0.680398 | 1.4:-9968513 | MS.gene021568:CDS |
| GTCCTTGACAGATATGAACA+TGG | 0.683684 | 1.4:-9968691 | MS.gene021568:CDS |
| TGACAGCGAAGATGAATGGG+TGG | 0.689914 | 1.4:-9968754 | MS.gene021568:CDS |
| GGAAGCAGTCAGGAAACACA+TGG | 0.712768 | 1.4:-9968330 | MS.gene021568:CDS |
| TCACACATAAAACAACACGA+TGG | 0.725722 | 1.4:+9968609 | None:intergenic |
| TTATGGTGATGATGACGATG+AGG | 0.730109 | 1.4:-9968282 | MS.gene021568:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATTTATTTATAAGT+TGG | - | chr1.4:9967765-9967784 | MS.gene021568:CDS | 10.0% |
| !! | AAAAAAGAATATGTTTGATT+TGG | - | chr1.4:9969599-9969618 | MS.gene021568:intron | 15.0% |
| !! | TAACTGATAAAAAGAATATT+AGG | + | chr1.4:9969930-9969949 | None:intergenic | 15.0% |
| !!! | AATCAAACATATTCTTTTTT+TGG | + | chr1.4:9969599-9969618 | None:intergenic | 15.0% |
| !!! | ATCAAACATATTCTTTTTTT+GGG | + | chr1.4:9969598-9969617 | None:intergenic | 15.0% |
| !!! | ATTTATTTATAAGTTGGATT+TGG | - | chr1.4:9967771-9967790 | MS.gene021568:intron | 15.0% |
| !!! | TTCACTTTTGAAAAATAAAT+AGG | - | chr1.4:9968976-9968995 | MS.gene021568:CDS | 15.0% |
| !!! | TTTATATTCTGAAAATATAG+AGG | - | chr1.4:9968937-9968956 | MS.gene021568:CDS | 15.0% |
| !! | AATAATATAGAACTTAGTGA+TGG | - | chr1.4:9969996-9970015 | MS.gene021568:intron | 20.0% |
| !! | ATAATATAGAACTTAGTGAT+GGG | - | chr1.4:9969997-9970016 | MS.gene021568:intron | 20.0% |
| !! | TTTATATCCAATGTATCAAT+AGG | + | chr1.4:9969896-9969915 | None:intergenic | 20.0% |
| !!! | AAAGCTATTTCAATTACAAA+AGG | + | chr1.4:9968457-9968476 | None:intergenic | 20.0% |
| !!! | ACTTTTGAAAAATAAATAGG+TGG | - | chr1.4:9968979-9968998 | MS.gene021568:CDS | 20.0% |
| !!! | ATAAGTTTTGTGATAATGTT+TGG | - | chr1.4:9968638-9968657 | MS.gene021568:CDS | 20.0% |
| !!! | ATGTATCATAATATTGATTC+GGG | - | chr1.4:9967955-9967974 | MS.gene021568:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+TGG | - | chr1.4:9968492-9968511 | MS.gene021568:CDS | 20.0% |
| !!! | GATGAATATCTTAATTTTTC+AGG | - | chr1.4:9970260-9970279 | MS.gene021568:intron | 20.0% |
| !!! | GATGTATCATAATATTGATT+CGG | - | chr1.4:9967954-9967973 | MS.gene021568:CDS | 20.0% |
| !!! | GGTTATAAGTTGTTTTTATA+AGG | - | chr1.4:9968126-9968145 | MS.gene021568:intron | 20.0% |
| ! | AAAAAATCAACTAGAACTCT+AGG | - | chr1.4:9970053-9970072 | MS.gene021568:intron | 25.0% |
| ! | ATTAAACAGAAAATAGAGTG+CGG | + | chr1.4:9970183-9970202 | None:intergenic | 25.0% |
| ! | TGTTATATACCTTTGTTGAT+GGG | - | chr1.4:9967908-9967927 | MS.gene021568:CDS | 25.0% |
| ! | TTCACAGATATCAACAAAAA+TGG | + | chr1.4:9967879-9967898 | None:intergenic | 25.0% |
| ! | TTGTTATATACCTTTGTTGA+TGG | - | chr1.4:9967907-9967926 | MS.gene021568:CDS | 25.0% |
| ! | TTTCATAAGTTCTCCAAAAT+AGG | - | chr1.4:9968382-9968401 | MS.gene021568:CDS | 25.0% |
| !! | ACGTTGTATTGTTATTGTAT+AGG | - | chr1.4:9968105-9968124 | MS.gene021568:intron | 25.0% |
| !! | ACTGTTTTCATAACCTATTT+TGG | + | chr1.4:9968398-9968417 | None:intergenic | 25.0% |
| !! | TATTTTCTGTTTAATGCTGT+GGG | - | chr1.4:9970188-9970207 | MS.gene021568:intron | 25.0% |
| !! | TCTATAGGGGTAATTTTAAA+AGG | + | chr1.4:9969863-9969882 | None:intergenic | 25.0% |
| !!! | ACGTACAATTGTTTTTGTAT+AGG | + | chr1.4:9968749-9968768 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTATAAGGTCTAT+TGG | - | chr1.4:9968134-9968153 | MS.gene021568:intron | 25.0% |
| !!! | TATCTTAATTTTTCAGGTAC+AGG | - | chr1.4:9970266-9970285 | MS.gene021568:intron | 25.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1.4:9968852-9968871 | MS.gene021568:CDS | 30.0% | |
| AATTCTATGATTATACCAGC+AGG | - | chr1.4:9969804-9969823 | MS.gene021568:intron | 30.0% | |
| AGATATTCATCCATATTACC+AGG | + | chr1.4:9970251-9970270 | None:intergenic | 30.0% | |
| AGCTTCATTACAAATCTGAA+TGG | - | chr1.4:9967684-9967703 | MS.gene021568:CDS | 30.0% | |
| ATAATATCGCAAGTATTCAC+GGG | + | chr1.4:9970081-9970100 | None:intergenic | 30.0% | |
| ATAATGTTTGGTAGAACTGT+TGG | - | chr1.4:9968650-9968669 | MS.gene021568:CDS | 30.0% | |
| ATAGGTTATAAGTTGTCTAC+TGG | + | chr1.4:9968731-9968750 | None:intergenic | 30.0% | |
| ATTCGGGTATGATTATGTAT+AGG | - | chr1.4:9967971-9967990 | MS.gene021568:CDS | 30.0% | |
| CAAAACAATAGAAAACTGCA+TGG | - | chr1.4:9969468-9969487 | MS.gene021568:intron | 30.0% | |
| CTAATATCTTCCCAATTTGT+AGG | - | chr1.4:9969634-9969653 | MS.gene021568:intron | 30.0% | |
| CTCAATAAGCCAATCTAAAA+GGG | - | chr1.4:9968262-9968281 | MS.gene021568:CDS | 30.0% | |
| CTTCACAACTACAAAACTAA+GGG | + | chr1.4:9968878-9968897 | None:intergenic | 30.0% | |
| GATAATATCGCAAGTATTCA+CGG | + | chr1.4:9970082-9970101 | None:intergenic | 30.0% | |
| GTAAATAAACCAATCCAAAC+AGG | + | chr1.4:9968297-9968316 | None:intergenic | 30.0% | |
| GTTATATACCTTTGTTGATG+GGG | - | chr1.4:9967909-9967928 | MS.gene021568:CDS | 30.0% | |
| TCTTTCAAATACTCAACATC+TGG | + | chr1.4:9969526-9969545 | None:intergenic | 30.0% | |
| TGAAAAATAAATAGGTGGCT+GGG | - | chr1.4:9968984-9969003 | MS.gene021568:CDS | 30.0% | |
| TTAAACAGAAAATAGAGTGC+GGG | + | chr1.4:9970182-9970201 | None:intergenic | 30.0% | |
| TTCGGGTATGATTATGTATA+GGG | - | chr1.4:9967972-9967991 | MS.gene021568:CDS | 30.0% | |
| TTGAAAAATAAATAGGTGGC+TGG | - | chr1.4:9968983-9969002 | MS.gene021568:CDS | 30.0% | |
| ! | ATTTTCTGTTTAATGCTGTG+GGG | - | chr1.4:9970189-9970208 | MS.gene021568:intron | 30.0% |
| ! | CTATTTTCTGTTTAATGCTG+TGG | - | chr1.4:9970187-9970206 | MS.gene021568:intron | 30.0% |
| ! | GGAGAATTTTTGTAGGATTA+GGG | - | chr1.4:9968578-9968597 | MS.gene021568:CDS | 30.0% |
| ! | TCTCTTTTGACCTACAAATT+GGG | + | chr1.4:9969647-9969666 | None:intergenic | 30.0% |
| !!! | ACATATTCTTTTTTTGGGAG+AGG | + | chr1.4:9969593-9969612 | None:intergenic | 30.0% |
| !!! | CATATTCTTTTTTTGGGAGA+GGG | + | chr1.4:9969592-9969611 | None:intergenic | 30.0% |
| AAATAACATTGCCGTTACTG+CGG | - | chr1.4:9970127-9970146 | MS.gene021568:intron | 35.0% | |
| AATATGTGACATTGTTTGGC+AGG | + | chr1.4:9970420-9970439 | None:intergenic | 35.0% | |
| ATAGGCCTTACAGATTCTAT+AGG | + | chr1.4:9969878-9969897 | None:intergenic | 35.0% | |
| ATCATTGTCACCTGGTAATA+TGG | - | chr1.4:9970238-9970257 | MS.gene021568:intron | 35.0% | |
| CAAGGGATACAAAAGTGAAA+AGG | - | chr1.4:9969114-9969133 | MS.gene021568:intron | 35.0% | |
| CATGAGTTTATGATGCTGTT+TGG | + | chr1.4:9968226-9968245 | None:intergenic | 35.0% | |
| CCTTCACAACTACAAAACTA+AGG | + | chr1.4:9968879-9968898 | None:intergenic | 35.0% | |
| GAAAAATAAATAGGTGGCTG+GGG | - | chr1.4:9968985-9969004 | MS.gene021568:CDS | 35.0% | |
| GAATGCTGAAAATGATGACA+TGG | - | chr1.4:9969381-9969400 | MS.gene021568:intron | 35.0% | |
| GAGTATTTGAAAGATCCGAA+AGG | - | chr1.4:9969532-9969551 | MS.gene021568:intron | 35.0% | |
| GATTATGTATAGGGCATGTT+TGG | - | chr1.4:9967981-9968000 | MS.gene021568:CDS | 35.0% | |
| GCTCAATAAGCCAATCTAAA+AGG | - | chr1.4:9968261-9968280 | MS.gene021568:CDS | 35.0% | |
| TAGGCCTTACAGATTCTATA+GGG | + | chr1.4:9969877-9969896 | None:intergenic | 35.0% | |
| TCACACATAAAACAACACGA+TGG | + | chr1.4:9969439-9969458 | None:intergenic | 35.0% | |
| TGAAAATGATGACATGGATG+AGG | - | chr1.4:9969387-9969406 | MS.gene021568:intron | 35.0% | |
| TGTAAGGCCTATTGATACAT+TGG | - | chr1.4:9969886-9969905 | MS.gene021568:intron | 35.0% | |
| TTACCCCTATAGAATCTGTA+AGG | - | chr1.4:9969870-9969889 | MS.gene021568:intron | 35.0% | |
| ! | AGTAGAGGGAGAATTTTTGT+AGG | - | chr1.4:9968571-9968590 | MS.gene021568:CDS | 35.0% |
| ! | ATCAGTTATGTTGATGAGCA+AGG | - | chr1.4:9969942-9969961 | MS.gene021568:intron | 35.0% |
| ! | CAATGTTATTTGCTGCTGAT+GGG | + | chr1.4:9970118-9970137 | None:intergenic | 35.0% |
| ! | GAGTTATCAACCACTCTTTT+AGG | + | chr1.4:9969259-9969278 | None:intergenic | 35.0% |
| ! | GGGAGAATTTTTGTAGGATT+AGG | - | chr1.4:9968577-9968596 | MS.gene021568:CDS | 35.0% |
| ! | GTCTCTTTTGACCTACAAAT+TGG | + | chr1.4:9969648-9969667 | None:intergenic | 35.0% |
| ! | TCAGTTATGTTGATGAGCAA+GGG | - | chr1.4:9969943-9969962 | MS.gene021568:intron | 35.0% |
| ! | TTATCAACCACTCTTTTAGG+AGG | + | chr1.4:9969256-9969275 | None:intergenic | 35.0% |
| !! | AGGGTAAATTTGTTATGGGT+AGG | - | chr1.4:9967932-9967951 | MS.gene021568:CDS | 35.0% |
| !! | ATGCTGTTTGGTAGAACTTT+TGG | + | chr1.4:9968214-9968233 | None:intergenic | 35.0% |
| !! | GAACTTTTGGAAACAGCTTA+TGG | + | chr1.4:9968201-9968220 | None:intergenic | 35.0% |
| !! | GCGTACAAGTCTTTGAAATT+AGG | - | chr1.4:9967833-9967852 | MS.gene021568:intron | 35.0% |
| !!! | CCTTAGTTTTGTAGTTGTGA+AGG | - | chr1.4:9968876-9968895 | MS.gene021568:CDS | 35.0% |
| !!! | TAGTTTTGTAGTTGTGAAGG+AGG | - | chr1.4:9968879-9968898 | MS.gene021568:CDS | 35.0% |
| AAAGGACTCCTCACTTATCT+TGG | - | chr1.4:9969550-9969569 | MS.gene021568:intron | 40.0% | |
| AAGGACTCCTCACTTATCTT+GGG | - | chr1.4:9969551-9969570 | MS.gene021568:intron | 40.0% | |
| AATCACTGCAAGGTGCATTA+TGG | - | chr1.4:9969746-9969765 | MS.gene021568:intron | 40.0% | |
| AATGAATCGAACAAACCTGC+TGG | + | chr1.4:9969822-9969841 | None:intergenic | 40.0% | |
| AGATAAGTGAGGAGTCCTTT+CGG | + | chr1.4:9969550-9969569 | None:intergenic | 40.0% | |
| AGGCCTTACAGATTCTATAG+GGG | + | chr1.4:9969876-9969895 | None:intergenic | 40.0% | |
| AGTCCAGAACTCATATGATG+CGG | - | chr1.4:9969155-9969174 | MS.gene021568:intron | 40.0% | |
| ATGATGACAGCGAAGATGAA+TGG | - | chr1.4:9969287-9969306 | MS.gene021568:intron | 40.0% | |
| CCAATCTAAAAGGGCTCATA+GGG | - | chr1.4:9968271-9968290 | MS.gene021568:CDS | 40.0% | |
| CTCGAATAAGCCAATCCAAA+CGG | + | chr1.4:9968605-9968624 | None:intergenic | 40.0% | |
| CTCGTAATCACTAAGATGTC+TGG | - | chr1.4:9970026-9970045 | MS.gene021568:intron | 40.0% | |
| GAACTGTTGGAAGTAGCTTA+TGG | - | chr1.4:9968663-9968682 | MS.gene021568:CDS | 40.0% | |
| GGATGAAGAGTAATGTGATC+CGG | - | chr1.4:9970392-9970411 | MS.gene021568:CDS | 40.0% | |
| GTCCATGTTCATATCTGTCA+AGG | + | chr1.4:9969359-9969378 | None:intergenic | 40.0% | |
| GTCCTTGACAGATATGAACA+TGG | - | chr1.4:9969354-9969373 | MS.gene021568:intron | 40.0% | |
| GTTCATATGCACAAGCATCA+TGG | - | chr1.4:9969490-9969509 | MS.gene021568:intron | 40.0% | |
| TACAAAACTAAGGGCCTGTT+TGG | + | chr1.4:9968869-9968888 | None:intergenic | 40.0% | |
| TATCCAAAATGGCCATAGTG+TGG | - | chr1.4:9968503-9968522 | MS.gene021568:CDS | 40.0% | |
| TCGAATAAGCCAATCCAAAC+GGG | + | chr1.4:9968604-9968623 | None:intergenic | 40.0% | |
| TGATGACAGCGAAGATGAAT+GGG | - | chr1.4:9969288-9969307 | MS.gene021568:intron | 40.0% | |
| TGTAGTTGTGAAGGAGGATT+TGG | - | chr1.4:9968885-9968904 | MS.gene021568:CDS | 40.0% | |
| TTCAGCAAATCATTGTCACC+TGG | - | chr1.4:9970230-9970249 | MS.gene021568:intron | 40.0% | |
| TTGAAGCAGATGAACAGATC+AGG | - | chr1.4:9970343-9970362 | MS.gene021568:CDS | 40.0% | |
| ! | ATATACCTTTGTTGATGGGG+AGG | - | chr1.4:9967912-9967931 | MS.gene021568:CDS | 40.0% |
| ! | ATGGATGAGGATGATGATGA+TGG | - | chr1.4:9969400-9969419 | MS.gene021568:intron | 40.0% |
| ! | GCAATGTTATTTGCTGCTGA+TGG | + | chr1.4:9970119-9970138 | None:intergenic | 40.0% |
| ! | GGTTGATTCTGATGATGATC+TGG | - | chr1.4:9969315-9969334 | MS.gene021568:intron | 40.0% |
| ! | TATACCTTTGTTGATGGGGA+GGG | - | chr1.4:9967913-9967932 | MS.gene021568:CDS | 40.0% |
| ! | TTATGGTGATGATGACGATG+AGG | - | chr1.4:9969763-9969782 | MS.gene021568:intron | 40.0% |
| ! | TTTTGTATCCCTTGCCACAT+AGG | + | chr1.4:9969108-9969127 | None:intergenic | 40.0% |
| !! | AGTTCTGGACTTAAGATGCT+CGG | + | chr1.4:9969146-9969165 | None:intergenic | 40.0% |
| !! | GGGGAGGGTAAATTTGTTAT+GGG | - | chr1.4:9967928-9967947 | MS.gene021568:CDS | 40.0% |
| !! | GTGACAATGATTTGCTGAAG+TGG | + | chr1.4:9970229-9970248 | None:intergenic | 40.0% |
| !! | TCACAATTTGCTGCCTTGAT+TGG | + | chr1.4:9970312-9970331 | None:intergenic | 40.0% |
| !! | TGGGGAGGGTAAATTTGTTA+TGG | - | chr1.4:9967927-9967946 | MS.gene021568:CDS | 40.0% |
| !!! | ATTTTTCAGGTACAGGAGCA+TGG | - | chr1.4:9970273-9970292 | MS.gene021568:intron | 40.0% |
| !!! | TTTTTCAGGTACAGGAGCAT+GGG | - | chr1.4:9970274-9970293 | MS.gene021568:intron | 40.0% |
| AACAATGCTTCTGTCACTCC+AGG | + | chr1.4:9969013-9969032 | None:intergenic | 45.0% | |
| AAGGAGATAGCCAGTCAGAT+GGG | - | chr1.4:9969185-9969204 | MS.gene021568:intron | 45.0% | |
| AGCATATGCGTAGCAAGATG+GGG | - | chr1.4:9970371-9970390 | MS.gene021568:CDS | 45.0% | |
| CAAAATGGCCATAGTGTGGT+GGG | - | chr1.4:9968507-9968526 | MS.gene021568:CDS | 45.0% | |
| GAGCATATGCGTAGCAAGAT+GGG | - | chr1.4:9970370-9970389 | MS.gene021568:CDS | 45.0% | |
| GCCAATCTAAAAGGGCTCAT+AGG | - | chr1.4:9968270-9968289 | MS.gene021568:CDS | 45.0% | |
| GGTAGCGAAAAATCACTGCA+AGG | - | chr1.4:9969736-9969755 | MS.gene021568:intron | 45.0% | |
| GTCCAGAACTCATATGATGC+GGG | - | chr1.4:9969156-9969175 | MS.gene021568:intron | 45.0% | |
| TCGCTACAATCTCAAACGCA+AGG | - | chr1.4:9967709-9967728 | MS.gene021568:CDS | 45.0% | |
| TGACATTGTTTGGCAGGTTC+CGG | + | chr1.4:9970414-9970433 | None:intergenic | 45.0% | |
| TGTGTCTGTACTGCAACGAT+CGG | - | chr1.4:9969672-9969691 | MS.gene021568:intron | 45.0% | |
| TTATAGCCTTCCCATCTGAC+TGG | + | chr1.4:9969198-9969217 | None:intergenic | 45.0% | |
| TTTACCCTCCCCATCAACAA+AGG | + | chr1.4:9967920-9967939 | None:intergenic | 45.0% | |
| ! | CCCTATGAGCCCTTTTAGAT+TGG | + | chr1.4:9968274-9968293 | None:intergenic | 45.0% |
| !! | TCAACCACTCTTTTAGGAGG+AGG | + | chr1.4:9969253-9969272 | None:intergenic | 45.0% |
| !! | TGAGGATGATGATGATGGTG+TGG | - | chr1.4:9969405-9969424 | MS.gene021568:intron | 45.0% |
| !! | AAATAAATTATCAAAAAATT+CGG | + | chr1.4:9967759-9967778 | None:intergenic | 5.0% |
| AAGCTGCACTTGCTCAAGAG+AGG | - | chr1.4:9969044-9969063 | MS.gene021568:CDS | 50.0% | |
| ACTGCTTCCAAGCTGCTGAA+AGG | + | chr1.4:9969704-9969723 | None:intergenic | 50.0% | |
| AGATAGCCAGTCAGATGGGA+AGG | - | chr1.4:9969189-9969208 | MS.gene021568:intron | 50.0% | |
| AGCCCTATGCTCTATAGCTG+TGG | - | chr1.4:9969082-9969101 | MS.gene021568:intron | 50.0% | |
| AGCTGCACTTGCTCAAGAGA+GGG | - | chr1.4:9969045-9969064 | MS.gene021568:CDS | 50.0% | |
| AGGCCACAGCTATAGAGCAT+AGG | + | chr1.4:9969088-9969107 | None:intergenic | 50.0% | |
| AGGTTCTATGCCGGTATGGT+GGG | - | chr1.4:9968538-9968557 | MS.gene021568:CDS | 50.0% | |
| CAAGCCTCCTCCTAAAAGAG+TGG | - | chr1.4:9969246-9969265 | MS.gene021568:intron | 50.0% | |
| CATTGCCGTTACTGCGGAAT+TGG | - | chr1.4:9970133-9970152 | MS.gene021568:intron | 50.0% | |
| CCAAAATGGCCATAGTGTGG+TGG | - | chr1.4:9968506-9968525 | MS.gene021568:CDS | 50.0% | |
| CCTCACTTATCTTGGGCTGA+AGG | - | chr1.4:9969558-9969577 | MS.gene021568:intron | 50.0% | |
| CCTTCAGCCCAAGATAAGTG+AGG | + | chr1.4:9969561-9969580 | None:intergenic | 50.0% | |
| CGATGAGGAGGAAGTTGAGT+TGG | - | chr1.4:9969778-9969797 | MS.gene021568:intron | 50.0% | |
| CTCATAGGGCCTGTTTGGAT+TGG | - | chr1.4:9968285-9968304 | MS.gene021568:CDS | 50.0% | |
| CTCTATAGCTGTGGCCTATG+TGG | - | chr1.4:9969091-9969110 | MS.gene021568:intron | 50.0% | |
| GAAGGAGATAGCCAGTCAGA+TGG | - | chr1.4:9969184-9969203 | MS.gene021568:intron | 50.0% | |
| GAGGTTACCAGGTTCTATGC+CGG | - | chr1.4:9968529-9968548 | MS.gene021568:CDS | 50.0% | |
| GCAGATGAACAGATCAGGTG+TGG | - | chr1.4:9970348-9970367 | MS.gene021568:CDS | 50.0% | |
| GGAAGCAGTCAGGAAACACA+TGG | - | chr1.4:9969715-9969734 | MS.gene021568:intron | 50.0% | |
| GGAGCATATGCGTAGCAAGA+TGG | - | chr1.4:9970369-9970388 | MS.gene021568:CDS | 50.0% | |
| GGCCACAGCTATAGAGCATA+GGG | + | chr1.4:9969087-9969106 | None:intergenic | 50.0% | |
| GGGAAGCAGCTAGTTGTATC+AGG | - | chr1.4:9969963-9969982 | MS.gene021568:intron | 50.0% | |
| GTGTCATCCTTTCAGCAGCT+TGG | - | chr1.4:9969694-9969713 | MS.gene021568:intron | 50.0% | |
| TACCAGGTTCTATGCCGGTA+TGG | - | chr1.4:9968534-9968553 | MS.gene021568:CDS | 50.0% | |
| TGACAGCGAAGATGAATGGG+TGG | - | chr1.4:9969291-9969310 | MS.gene021568:intron | 50.0% | |
| TGCAGCCAATTCCGCAGTAA+CGG | + | chr1.4:9970141-9970160 | None:intergenic | 50.0% | |
| TTACTGCGGAATTGGCTGCA+AGG | - | chr1.4:9970141-9970160 | MS.gene021568:intron | 50.0% | |
| TTCACAACGCGTTGTGGAAG+TGG | + | chr1.4:9969226-9969245 | None:intergenic | 50.0% | |
| TTGCTGCCTTGATTGGACAG+TGG | + | chr1.4:9970305-9970324 | None:intergenic | 50.0% | |
| TTGTAGGATTAGGGCCCGTT+TGG | - | chr1.4:9968587-9968606 | MS.gene021568:CDS | 50.0% | |
| ! | CCACCACACTATGGCCATTT+TGG | + | chr1.4:9968509-9968528 | None:intergenic | 50.0% |
| ! | TGACTGGCTATCTCCTTCAG+AGG | + | chr1.4:9969182-9969201 | None:intergenic | 50.0% |
| ! | TGGTGATGATGACGATGAGG+AGG | - | chr1.4:9969766-9969785 | MS.gene021568:intron | 50.0% |
| ! | TTATTTGCTGCTGATGGGCG+TGG | + | chr1.4:9970113-9970132 | None:intergenic | 50.0% |
| !! | TGGGAGGTGTTGCTAGTAGA+GGG | - | chr1.4:9968557-9968576 | MS.gene021568:CDS | 50.0% |
| AAATAGGTGGCTGGGGTTCC+TGG | - | chr1.4:9968992-9969011 | MS.gene021568:CDS | 55.0% | |
| AAGGGCTCATAGGGCCTGTT+TGG | - | chr1.4:9968280-9968299 | MS.gene021568:CDS | 55.0% | |
| AGCAACACCTCCCACCATAC+CGG | + | chr1.4:9968551-9968570 | None:intergenic | 55.0% | |
| AGCTGTGGCCTATGTGGCAA+GGG | - | chr1.4:9969097-9969116 | MS.gene021568:intron | 55.0% | |
| CACCATACCGGCATAGAACC+TGG | + | chr1.4:9968539-9968558 | None:intergenic | 55.0% | |
| CAGCGAAGATGAATGGGTGG+AGG | - | chr1.4:9969294-9969313 | MS.gene021568:intron | 55.0% | |
| CAGGTTCTATGCCGGTATGG+TGG | - | chr1.4:9968537-9968556 | MS.gene021568:CDS | 55.0% | |
| CATATGATGCGGGCCTCTGA+AGG | - | chr1.4:9969166-9969185 | MS.gene021568:intron | 55.0% | |
| GGATTAGGGCCCGTTTGGAT+TGG | - | chr1.4:9968592-9968611 | MS.gene021568:CDS | 55.0% | |
| GGCCCGCATCATATGAGTTC+TGG | + | chr1.4:9969161-9969180 | None:intergenic | 55.0% | |
| GGTAACCTCCCACCACACTA+TGG | + | chr1.4:9968518-9968537 | None:intergenic | 55.0% | |
| GTCTGGCCACTGTCCAATCA+AGG | - | chr1.4:9970296-9970315 | MS.gene021568:intron | 55.0% | |
| TAGCTGTGGCCTATGTGGCA+AGG | - | chr1.4:9969096-9969115 | MS.gene021568:intron | 55.0% | |
| TCAGCAGCTTGGAAGCAGTC+AGG | - | chr1.4:9969705-9969724 | MS.gene021568:intron | 55.0% | |
| ! | AATGGCCATAGTGTGGTGGG+AGG | - | chr1.4:9968510-9968529 | MS.gene021568:CDS | 55.0% |
| ! | GGCTTGTTCACAACGCGTTG+TGG | + | chr1.4:9969232-9969251 | None:intergenic | 55.0% |
| ! | TAGTGTGGTGGGAGGTTACC+AGG | - | chr1.4:9968518-9968537 | MS.gene021568:CDS | 55.0% |
| ! | TTCTATGCCGGTATGGTGGG+AGG | - | chr1.4:9968541-9968560 | MS.gene021568:CDS | 55.0% |
| !! | GTGGGAGGTGTTGCTAGTAG+AGG | - | chr1.4:9968556-9968575 | MS.gene021568:CDS | 55.0% |
| ! | CAGGTACAGGAGCATGGGTC+TGG | - | chr1.4:9970279-9970298 | MS.gene021568:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 9967626 | 9970441 | 9967626 | ID=MS.gene021568 |
| chr1.4 | mRNA | 9967626 | 9970441 | 9967626 | ID=MS.gene021568.t1;Parent=MS.gene021568 |
| chr1.4 | exon | 9970337 | 9970441 | 9970337 | ID=MS.gene021568.t1.exon1;Parent=MS.gene021568.t1 |
| chr1.4 | CDS | 9970337 | 9970441 | 9970337 | ID=cds.MS.gene021568.t1;Parent=MS.gene021568.t1 |
| chr1.4 | exon | 9968488 | 9969069 | 9968488 | ID=MS.gene021568.t1.exon2;Parent=MS.gene021568.t1 |
| chr1.4 | CDS | 9968488 | 9969069 | 9968488 | ID=cds.MS.gene021568.t1;Parent=MS.gene021568.t1 |
| chr1.4 | exon | 9968242 | 9968411 | 9968242 | ID=MS.gene021568.t1.exon3;Parent=MS.gene021568.t1 |
| chr1.4 | CDS | 9968242 | 9968411 | 9968242 | ID=cds.MS.gene021568.t1;Parent=MS.gene021568.t1 |
| chr1.4 | exon | 9967905 | 9968120 | 9967905 | ID=MS.gene021568.t1.exon4;Parent=MS.gene021568.t1 |
| chr1.4 | CDS | 9967905 | 9968120 | 9967905 | ID=cds.MS.gene021568.t1;Parent=MS.gene021568.t1 |
| chr1.4 | exon | 9967626 | 9967785 | 9967626 | ID=MS.gene021568.t1.exon5;Parent=MS.gene021568.t1 |
| chr1.4 | CDS | 9967626 | 9967785 | 9967626 | ID=cds.MS.gene021568.t1;Parent=MS.gene021568.t1 |
| Gene Sequence |
| Protein sequence |
