Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86289.t1 | RHN76819.1 | 98 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 1.20E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86289.t1 | Q8H1G5 | 61.4 | 412 | 149 | 3 | 1 | 410 | 1 | 404 | 6.3e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86289.t1 | A0A396JF03 | 98.0 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 8.6e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54064 | MS.gene86289 | PPI |
| MS.gene61069 | MS.gene86289 | PPI |
| MS.gene015887 | MS.gene86289 | PPI |
| MS.gene033230 | MS.gene86289 | PPI |
| MS.gene86289 | MS.gene008317 | PPI |
| MS.gene86289 | MS.gene05011 | PPI |
| MS.gene86289 | MS.gene049715 | PPI |
| MS.gene061557 | MS.gene86289 | PPI |
| MS.gene021568 | MS.gene86289 | PPI |
| MS.gene48391 | MS.gene86289 | PPI |
| MS.gene86289 | MS.gene60354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86289.t1 | MTR_1g009770 | 98.049 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 0.0 | 836 |
| MS.gene86289.t1 | MTR_1g047010 | 86.027 | 365 | 23 | 1 | 35 | 399 | 11 | 347 | 0.0 | 545 |
| MS.gene86289.t1 | MTR_5g061270 | 89.933 | 149 | 5 | 3 | 36 | 184 | 13 | 151 | 6.72e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86289.t1 | AT4G31420 | 62.802 | 414 | 140 | 5 | 1 | 410 | 1 | 404 | 0.0 | 525 |
| MS.gene86289.t1 | AT4G31420 | 62.651 | 415 | 140 | 6 | 1 | 410 | 1 | 405 | 0.0 | 520 |
| MS.gene86289.t1 | AT2G24500 | 64.146 | 410 | 132 | 7 | 1 | 410 | 1 | 395 | 1.78e-180 | 508 |
Find 85 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGGTGGCTGGGGTTCC+TGG | 0.262196 | 1.3:-10432284 | MS.gene86289:intron |
| CATTGCCGTTACTGCGGAAT+TGG | 0.292956 | 1.3:-10431143 | MS.gene86289:CDS |
| TCACAATTTGCTGCCTTGAT+TGG | 0.324791 | 1.3:+10430967 | None:intergenic |
| TGACATTGTTTGGCAGGTTC+CGG | 0.326569 | 1.3:+10430865 | None:intergenic |
| GGCCCGCATCATATGAGTTC+TGG | 0.357386 | 1.3:+10432118 | None:intergenic |
| AATCACTGCAAGGTGCATTA+TGG | 0.365367 | 1.3:-10431530 | MS.gene86289:CDS |
| AAAGGACTCCTCACTTATCT+TGG | 0.381564 | 1.3:-10431726 | MS.gene86289:CDS |
| GACTAATATGTGACATTGTT+TGG | 0.402840 | 1.3:+10430855 | None:intergenic |
| GGGAAGCAGCTAGTTGTATC+TGG | 0.418173 | 1.3:-10431313 | MS.gene86289:CDS |
| CAGGTACAGGAGCATGGGTC+TGG | 0.422872 | 1.3:-10430997 | MS.gene86289:CDS |
| TTCACAACGCGTTGTGGAAG+TGG | 0.423028 | 1.3:+10432053 | None:intergenic |
| TCTTTCAAATACTCAACATC+TGG | 0.426978 | 1.3:+10431753 | None:intergenic |
| CGATGAGGAGGAAGTTGAGT+TGG | 0.431117 | 1.3:-10431498 | MS.gene86289:CDS |
| AATATGTGACATTGTTTGGC+AGG | 0.441386 | 1.3:+10430859 | None:intergenic |
| GATAATATCGCAAGTATTCA+CGG | 0.442099 | 1.3:+10431197 | None:intergenic |
| GAGCATATGCGTAGCAAGAT+GGG | 0.442807 | 1.3:-10430906 | MS.gene86289:CDS |
| GGTTGATTCTGATGATGATC+TGG | 0.452488 | 1.3:-10431961 | MS.gene86289:CDS |
| AGATAAGTGAGGAGTCCTTT+CGG | 0.464465 | 1.3:+10431729 | None:intergenic |
| CTCGTAATCACTAAGATGTC+TGG | 0.465514 | 1.3:-10431250 | MS.gene86289:CDS |
| TCAGCAGCTTGGAAGCAGTC+AGG | 0.483122 | 1.3:-10431571 | MS.gene86289:CDS |
| CTCTATAGCTGTGGCCTATG+TGG | 0.493641 | 1.3:-10432185 | MS.gene86289:CDS |
| GCAATGTTATTTGCTGCTGA+TGG | 0.493721 | 1.3:+10431160 | None:intergenic |
| AAGGACTCCTCACTTATCTT+GGG | 0.494172 | 1.3:-10431725 | MS.gene86289:CDS |
| ATCAGTTATGTTGATGAGCA+AGG | 0.498615 | 1.3:-10431334 | MS.gene86289:intron |
| GGAGCATATGCGTAGCAAGA+TGG | 0.510156 | 1.3:-10430907 | MS.gene86289:CDS |
| GTGTCATCCTTTCAGCAGCT+TGG | 0.510364 | 1.3:-10431582 | MS.gene86289:CDS |
| ATGATGACAGCGAAGATGAA+TGG | 0.513343 | 1.3:-10431989 | MS.gene86289:CDS |
| TTGAAGCAGATGAACAGATC+AGG | 0.519397 | 1.3:-10430933 | MS.gene86289:CDS |
| TTATTTGCTGCTGATGGGCG+TGG | 0.519564 | 1.3:+10431166 | None:intergenic |
| AACAATGCTTCTGTCACTCC+AGG | 0.527586 | 1.3:+10432266 | None:intergenic |
| CAAGGGATACAAAAGTGAAA+AGG | 0.530314 | 1.3:-10432162 | MS.gene86289:CDS |
| GGCCACAGCTATAGAGCATA+GGG | 0.531535 | 1.3:+10432192 | None:intergenic |
| AATTCTATGATTATACCAGC+AGG | 0.531778 | 1.3:-10431472 | MS.gene86289:intron |
| CAATGTTATTTGCTGCTGAT+GGG | 0.534127 | 1.3:+10431161 | None:intergenic |
| AGCTTCATTACAAATCTGAA+TGG | 0.537834 | 1.3:-10433592 | MS.gene86289:CDS |
| GTCTGGCCACTGTCCAATCA+AGG | 0.539255 | 1.3:-10430980 | MS.gene86289:CDS |
| GTTCATATGCACAAGCATCA+TGG | 0.541183 | 1.3:-10431786 | MS.gene86289:CDS |
| GGCTTGTTCACAACGCGTTG+TGG | 0.544393 | 1.3:+10432047 | None:intergenic |
| CCTCACTTATCTTGGGCTGA+AGG | 0.545136 | 1.3:-10431718 | MS.gene86289:intron |
| AATAATATAGAACTTAGTGA+TGG | 0.547640 | 1.3:-10431280 | MS.gene86289:CDS |
| GGATGAAGAGTAATGTGATC+CGG | 0.550803 | 1.3:-10430884 | MS.gene86289:CDS |
| AGATAGCCAGTCAGATGGGA+AGG | 0.554248 | 1.3:-10432087 | MS.gene86289:CDS |
| AGGCCACAGCTATAGAGCAT+AGG | 0.556759 | 1.3:+10432191 | None:intergenic |
| TTATAGCCTTCCCATCTGAC+TGG | 0.557046 | 1.3:+10432081 | None:intergenic |
| TGATGACAGCGAAGATGAAT+GGG | 0.559525 | 1.3:-10431988 | MS.gene86289:CDS |
| CATATGATGCGGGCCTCTGA+AGG | 0.561060 | 1.3:-10432110 | MS.gene86289:CDS |
| AAGGAGATAGCCAGTCAGAT+GGG | 0.563189 | 1.3:-10432091 | MS.gene86289:CDS |
| TAGCTGTGGCCTATGTGGCA+AGG | 0.563752 | 1.3:-10432180 | MS.gene86289:CDS |
| AGCTGTGGCCTATGTGGCAA+GGG | 0.564127 | 1.3:-10432179 | MS.gene86289:CDS |
| TCAGTTATGTTGATGAGCAA+GGG | 0.565263 | 1.3:-10431333 | MS.gene86289:intron |
| TGCAGCCAATTCCGCAGTAA+CGG | 0.565856 | 1.3:+10431138 | None:intergenic |
| GTCCAGAACTCATATGATGC+GGG | 0.567214 | 1.3:-10432120 | MS.gene86289:CDS |
| GAAGGAGATAGCCAGTCAGA+TGG | 0.569810 | 1.3:-10432092 | MS.gene86289:CDS |
| GTCCATGTTCATATCTGTCA+AGG | 0.582115 | 1.3:+10431920 | None:intergenic |
| ATAATATAGAACTTAGTGAT+GGG | 0.585912 | 1.3:-10431279 | MS.gene86289:CDS |
| AAGCTGCACTTGCTCAAGAG+AGG | 0.587647 | 1.3:-10432232 | MS.gene86289:CDS |
| ATAATATCGCAAGTATTCAC+GGG | 0.591542 | 1.3:+10431198 | None:intergenic |
| TTACTGCGGAATTGGCTGCA+AGG | 0.592515 | 1.3:-10431135 | MS.gene86289:intron |
| AGTTCTGGACTTAAGATGCT+CGG | 0.594295 | 1.3:+10432133 | None:intergenic |
| ACTGCTTCCAAGCTGCTGAA+AGG | 0.595871 | 1.3:+10431575 | None:intergenic |
| TGACTGGCTATCTCCTTCAG+AGG | 0.597575 | 1.3:+10432097 | None:intergenic |
| TGGTGATGATGACGATGAGG+AGG | 0.609158 | 1.3:-10431510 | MS.gene86289:CDS |
| AGCTGCACTTGCTCAAGAGA+GGG | 0.613236 | 1.3:-10432231 | MS.gene86289:CDS |
| GCAGATGAACAGATCAGGTG+TGG | 0.616562 | 1.3:-10430928 | MS.gene86289:CDS |
| TGTGTCTGTACTGCAACGAT+CGG | 0.620367 | 1.3:-10431604 | MS.gene86289:CDS |
| TGAGGATGATGATGATGGTG+TGG | 0.620914 | 1.3:-10431871 | MS.gene86289:CDS |
| CAAGCCTCCTCCTAAAAGAG+TGG | 0.623878 | 1.3:-10432030 | MS.gene86289:CDS |
| AGCCCTATGCTCTATAGCTG+TGG | 0.631941 | 1.3:-10432194 | MS.gene86289:CDS |
| TGAAAATGATGACATGGATG+AGG | 0.635872 | 1.3:-10431889 | MS.gene86289:CDS |
| TCGCTACAATCTCAAACGCA+AGG | 0.638657 | 1.3:-10433567 | MS.gene86289:intron |
| ATGGATGAGGATGATGATGA+TGG | 0.639127 | 1.3:-10431876 | MS.gene86289:CDS |
| AGTCCAGAACTCATATGATG+CGG | 0.639377 | 1.3:-10432121 | MS.gene86289:CDS |
| GAATGCTGAAAATGATGACA+TGG | 0.644358 | 1.3:-10431895 | MS.gene86289:CDS |
| AGCATATGCGTAGCAAGATG+GGG | 0.651281 | 1.3:-10430905 | MS.gene86289:CDS |
| AAATAACATTGCCGTTACTG+CGG | 0.661600 | 1.3:-10431149 | MS.gene86289:CDS |
| CAGCGAAGATGAATGGGTGG+AGG | 0.662429 | 1.3:-10431982 | MS.gene86289:CDS |
| CAAAACAATAGAAAACTGCA+TGG | 0.674368 | 1.3:-10431808 | MS.gene86289:CDS |
| TTGCTGCCTTGATTGGACAG+TGG | 0.675930 | 1.3:+10430974 | None:intergenic |
| CCTTCAGCCCAAGATAAGTG+AGG | 0.679666 | 1.3:+10431718 | None:intergenic |
| GAGTATTTGAAAGATCCGAA+AGG | 0.680398 | 1.3:-10431744 | MS.gene86289:CDS |
| GTCCTTGACAGATATGAACA+TGG | 0.683684 | 1.3:-10431922 | MS.gene86289:CDS |
| TGACAGCGAAGATGAATGGG+TGG | 0.689914 | 1.3:-10431985 | MS.gene86289:CDS |
| GGAAGCAGTCAGGAAACACA+TGG | 0.712768 | 1.3:-10431561 | MS.gene86289:CDS |
| TCACACATAAAACAACACGA+TGG | 0.725722 | 1.3:+10431840 | None:intergenic |
| TTATGGTGATGATGACGATG+AGG | 0.730109 | 1.3:-10431513 | MS.gene86289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATTTATTTATAAGT+TGG | - | chr1.3:10430995-10431014 | MS.gene86289:CDS | 10.0% |
| !! | AAAAAAGAATATGTTTGATT+TGG | - | chr1.3:10432830-10432849 | MS.gene86289:intron | 15.0% |
| !! | TAACTGATAAAAAGAATATT+AGG | + | chr1.3:10433161-10433180 | None:intergenic | 15.0% |
| !!! | AATCAAACATATTCTTTTTT+TGG | + | chr1.3:10432830-10432849 | None:intergenic | 15.0% |
| !!! | ATCAAACATATTCTTTTTTT+GGG | + | chr1.3:10432829-10432848 | None:intergenic | 15.0% |
| !!! | ATTTATTTATAAGTTGGATT+TGG | - | chr1.3:10431001-10431020 | MS.gene86289:intron | 15.0% |
| !!! | TTCACTTTTGAAAAATAAAT+AGG | - | chr1.3:10432207-10432226 | MS.gene86289:CDS | 15.0% |
| !!! | TTTATATTCTGAAAATATAG+AGG | - | chr1.3:10432168-10432187 | MS.gene86289:CDS | 15.0% |
| !! | AATAATATAGAACTTAGTGA+TGG | - | chr1.3:10433227-10433246 | MS.gene86289:intron | 20.0% |
| !! | ATAATATAGAACTTAGTGAT+GGG | - | chr1.3:10433228-10433247 | MS.gene86289:intron | 20.0% |
| !! | TTTATATCCAATGTATCAAT+AGG | + | chr1.3:10433127-10433146 | None:intergenic | 20.0% |
| !!! | AAAGCTATTTCAATTACAAA+AGG | + | chr1.3:10431687-10431706 | None:intergenic | 20.0% |
| !!! | ACTTTTGAAAAATAAATAGG+TGG | - | chr1.3:10432210-10432229 | MS.gene86289:CDS | 20.0% |
| !!! | ATAAGTTTTGTGATAATGTT+TGG | - | chr1.3:10431869-10431888 | MS.gene86289:CDS | 20.0% |
| !!! | ATGTATCATAATATTGATTC+GGG | - | chr1.3:10431185-10431204 | MS.gene86289:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | - | chr1.3:10431722-10431741 | MS.gene86289:CDS | 20.0% |
| !!! | GATGAATATCTTAATTTTTC+AGG | - | chr1.3:10433491-10433510 | MS.gene86289:intron | 20.0% |
| !!! | GATGTATCATAATATTGATT+CGG | - | chr1.3:10431184-10431203 | MS.gene86289:CDS | 20.0% |
| !!! | GGTTATAAGTTGTTTTTATA+AGG | - | chr1.3:10431356-10431375 | MS.gene86289:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAAAA+GGG | - | chr1.3:10431723-10431742 | MS.gene86289:CDS | 20.0% |
| ! | AAAAAATCAACTAGAACTCT+AGG | - | chr1.3:10433284-10433303 | MS.gene86289:intron | 25.0% |
| ! | ATTAAACAGAAAATAGAGTG+CGG | + | chr1.3:10433414-10433433 | None:intergenic | 25.0% |
| ! | TGTTATATACCTTTGTTGAT+GGG | - | chr1.3:10431138-10431157 | MS.gene86289:CDS | 25.0% |
| ! | TTCACAGATATCAACAAAAA+TGG | + | chr1.3:10431109-10431128 | None:intergenic | 25.0% |
| ! | TTGTTATATACCTTTGTTGA+TGG | - | chr1.3:10431137-10431156 | MS.gene86289:CDS | 25.0% |
| ! | TTTCATAAGTTCTCCAAAAT+AGG | - | chr1.3:10431612-10431631 | MS.gene86289:CDS | 25.0% |
| !! | ACGTTGTATTGTTATTGTAT+AGG | - | chr1.3:10431335-10431354 | MS.gene86289:intron | 25.0% |
| !! | ACTGTTTTCATAACCTATTT+TGG | + | chr1.3:10431628-10431647 | None:intergenic | 25.0% |
| !! | TATTTTCTGTTTAATGCTGT+GGG | - | chr1.3:10433419-10433438 | MS.gene86289:intron | 25.0% |
| !! | TCTATAGGGGTAATTTTAAA+AGG | + | chr1.3:10433094-10433113 | None:intergenic | 25.0% |
| !!! | ACGTACAATTGTTTTTGTAT+AGG | + | chr1.3:10431980-10431999 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTATAAGGTCTAT+TGG | - | chr1.3:10431364-10431383 | MS.gene86289:intron | 25.0% |
| !!! | TATCTTAATTTTTCAGGTAC+AGG | - | chr1.3:10433497-10433516 | MS.gene86289:intron | 25.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1.3:10432083-10432102 | MS.gene86289:CDS | 30.0% | |
| AATTCTATGATTATACCAGC+AGG | - | chr1.3:10433035-10433054 | MS.gene86289:intron | 30.0% | |
| AGATATTCATCCATATTACC+AGG | + | chr1.3:10433482-10433501 | None:intergenic | 30.0% | |
| AGCTTCATTACAAATCTGAA+TGG | - | chr1.3:10430915-10430934 | MS.gene86289:CDS | 30.0% | |
| ATAATATCGCAAGTATTCAC+GGG | + | chr1.3:10433312-10433331 | None:intergenic | 30.0% | |
| ATAATGTTTGGTAGAACTGT+TGG | - | chr1.3:10431881-10431900 | MS.gene86289:CDS | 30.0% | |
| ATAGGTTATAAGTTGTCTAC+TGG | + | chr1.3:10431962-10431981 | None:intergenic | 30.0% | |
| ATTCGGGTATGATTATGTAT+AGG | - | chr1.3:10431201-10431220 | MS.gene86289:CDS | 30.0% | |
| CAAAACAATAGAAAACTGCA+TGG | - | chr1.3:10432699-10432718 | MS.gene86289:intron | 30.0% | |
| CTAATATCTTCCCAATTTGT+AGG | - | chr1.3:10432865-10432884 | MS.gene86289:intron | 30.0% | |
| CTCAATAAGCCAATCTAAAA+GGG | - | chr1.3:10431492-10431511 | MS.gene86289:CDS | 30.0% | |
| CTTCACAACTACAAAACTAA+GGG | + | chr1.3:10432109-10432128 | None:intergenic | 30.0% | |
| GATAATATCGCAAGTATTCA+CGG | + | chr1.3:10433313-10433332 | None:intergenic | 30.0% | |
| GTAAATAAACCAATCCAAAC+AGG | + | chr1.3:10431527-10431546 | None:intergenic | 30.0% | |
| GTTATATACCTTTGTTGATG+GGG | - | chr1.3:10431139-10431158 | MS.gene86289:CDS | 30.0% | |
| TCTTTCAAATACTCAACATC+TGG | + | chr1.3:10432757-10432776 | None:intergenic | 30.0% | |
| TGAAAAATAAATAGGTGGCT+GGG | - | chr1.3:10432215-10432234 | MS.gene86289:CDS | 30.0% | |
| TTAAACAGAAAATAGAGTGC+GGG | + | chr1.3:10433413-10433432 | None:intergenic | 30.0% | |
| TTCGGGTATGATTATGTATA+GGG | - | chr1.3:10431202-10431221 | MS.gene86289:CDS | 30.0% | |
| TTGAAAAATAAATAGGTGGC+TGG | - | chr1.3:10432214-10432233 | MS.gene86289:CDS | 30.0% | |
| ! | ATTTTCTGTTTAATGCTGTG+GGG | - | chr1.3:10433420-10433439 | MS.gene86289:intron | 30.0% |
| ! | CTATTTTCTGTTTAATGCTG+TGG | - | chr1.3:10433418-10433437 | MS.gene86289:intron | 30.0% |
| ! | GGAGAATTTTTGTAGGATTA+GGG | - | chr1.3:10431809-10431828 | MS.gene86289:CDS | 30.0% |
| ! | TCTCTTTTGACCTACAAATT+GGG | + | chr1.3:10432878-10432897 | None:intergenic | 30.0% |
| !!! | ACATATTCTTTTTTTGGGAG+AGG | + | chr1.3:10432824-10432843 | None:intergenic | 30.0% |
| !!! | CATATTCTTTTTTTGGGAGA+GGG | + | chr1.3:10432823-10432842 | None:intergenic | 30.0% |
| AAATAACATTGCCGTTACTG+CGG | - | chr1.3:10433358-10433377 | MS.gene86289:intron | 35.0% | |
| AATATGTGACATTGTTTGGC+AGG | + | chr1.3:10433651-10433670 | None:intergenic | 35.0% | |
| ATAGGCCTTACAGATTCTAT+AGG | + | chr1.3:10433109-10433128 | None:intergenic | 35.0% | |
| ATCATTGTCACCTGGTAATA+TGG | - | chr1.3:10433469-10433488 | MS.gene86289:intron | 35.0% | |
| CAAGGGATACAAAAGTGAAA+AGG | - | chr1.3:10432345-10432364 | MS.gene86289:intron | 35.0% | |
| CATGAGTTTATGATGCTGTT+TGG | + | chr1.3:10431456-10431475 | None:intergenic | 35.0% | |
| CCTTCACAACTACAAAACTA+AGG | + | chr1.3:10432110-10432129 | None:intergenic | 35.0% | |
| GAAAAATAAATAGGTGGCTG+GGG | - | chr1.3:10432216-10432235 | MS.gene86289:CDS | 35.0% | |
| GAATGCTGAAAATGATGACA+TGG | - | chr1.3:10432612-10432631 | MS.gene86289:intron | 35.0% | |
| GAGTATTTGAAAGATCCGAA+AGG | - | chr1.3:10432763-10432782 | MS.gene86289:intron | 35.0% | |
| GATTATGTATAGGGCATGTT+TGG | - | chr1.3:10431211-10431230 | MS.gene86289:CDS | 35.0% | |
| GCTCAATAAGCCAATCTAAA+AGG | - | chr1.3:10431491-10431510 | MS.gene86289:CDS | 35.0% | |
| TAGGCCTTACAGATTCTATA+GGG | + | chr1.3:10433108-10433127 | None:intergenic | 35.0% | |
| TCACACATAAAACAACACGA+TGG | + | chr1.3:10432670-10432689 | None:intergenic | 35.0% | |
| TGAAAATGATGACATGGATG+AGG | - | chr1.3:10432618-10432637 | MS.gene86289:intron | 35.0% | |
| TGTAAGGCCTATTGATACAT+TGG | - | chr1.3:10433117-10433136 | MS.gene86289:intron | 35.0% | |
| TTACCCCTATAGAATCTGTA+AGG | - | chr1.3:10433101-10433120 | MS.gene86289:intron | 35.0% | |
| ! | AGTAGAGGGAGAATTTTTGT+AGG | - | chr1.3:10431802-10431821 | MS.gene86289:CDS | 35.0% |
| ! | ATCAGTTATGTTGATGAGCA+AGG | - | chr1.3:10433173-10433192 | MS.gene86289:intron | 35.0% |
| ! | CAATGTTATTTGCTGCTGAT+GGG | + | chr1.3:10433349-10433368 | None:intergenic | 35.0% |
| ! | GAGTTATCAACCACTCTTTT+AGG | + | chr1.3:10432490-10432509 | None:intergenic | 35.0% |
| ! | GGGAGAATTTTTGTAGGATT+AGG | - | chr1.3:10431808-10431827 | MS.gene86289:CDS | 35.0% |
| ! | GTCTCTTTTGACCTACAAAT+TGG | + | chr1.3:10432879-10432898 | None:intergenic | 35.0% |
| ! | TCAGTTATGTTGATGAGCAA+GGG | - | chr1.3:10433174-10433193 | MS.gene86289:intron | 35.0% |
| ! | TTATCAACCACTCTTTTAGG+AGG | + | chr1.3:10432487-10432506 | None:intergenic | 35.0% |
| !! | AGGGTAAATTTGTTATGGGT+AGG | - | chr1.3:10431162-10431181 | MS.gene86289:CDS | 35.0% |
| !! | ATGCTGTTTGGTAGAACTTT+TGG | + | chr1.3:10431444-10431463 | None:intergenic | 35.0% |
| !! | GAACTTTTGGAAACAGCTTA+TGG | + | chr1.3:10431431-10431450 | None:intergenic | 35.0% |
| !! | GCGTACAAGTCTTTGAAATT+AGG | - | chr1.3:10431063-10431082 | MS.gene86289:intron | 35.0% |
| !!! | CCTTAGTTTTGTAGTTGTGA+AGG | - | chr1.3:10432107-10432126 | MS.gene86289:CDS | 35.0% |
| !!! | TAGTTTTGTAGTTGTGAAGG+AGG | - | chr1.3:10432110-10432129 | MS.gene86289:CDS | 35.0% |
| AAAGGACTCCTCACTTATCT+TGG | - | chr1.3:10432781-10432800 | MS.gene86289:intron | 40.0% | |
| AAGGACTCCTCACTTATCTT+GGG | - | chr1.3:10432782-10432801 | MS.gene86289:intron | 40.0% | |
| AATCACTGCAAGGTGCATTA+TGG | - | chr1.3:10432977-10432996 | MS.gene86289:intron | 40.0% | |
| AATGAATCGAACAAACCTGC+TGG | + | chr1.3:10433053-10433072 | None:intergenic | 40.0% | |
| AGATAAGTGAGGAGTCCTTT+CGG | + | chr1.3:10432781-10432800 | None:intergenic | 40.0% | |
| AGGCCTTACAGATTCTATAG+GGG | + | chr1.3:10433107-10433126 | None:intergenic | 40.0% | |
| AGTCCAGAACTCATATGATG+CGG | - | chr1.3:10432386-10432405 | MS.gene86289:intron | 40.0% | |
| ATGATGACAGCGAAGATGAA+TGG | - | chr1.3:10432518-10432537 | MS.gene86289:intron | 40.0% | |
| CCAATCTAAAAGGGCTCATA+GGG | - | chr1.3:10431501-10431520 | MS.gene86289:CDS | 40.0% | |
| CTCGAATAAGCCAATCCAAA+CGG | + | chr1.3:10431836-10431855 | None:intergenic | 40.0% | |
| CTCGTAATCACTAAGATGTC+TGG | - | chr1.3:10433257-10433276 | MS.gene86289:intron | 40.0% | |
| GAACTGTTGGAAGTAGCTTA+TGG | - | chr1.3:10431894-10431913 | MS.gene86289:CDS | 40.0% | |
| GGATGAAGAGTAATGTGATC+CGG | - | chr1.3:10433623-10433642 | MS.gene86289:CDS | 40.0% | |
| GTCCATGTTCATATCTGTCA+AGG | + | chr1.3:10432590-10432609 | None:intergenic | 40.0% | |
| GTCCTTGACAGATATGAACA+TGG | - | chr1.3:10432585-10432604 | MS.gene86289:intron | 40.0% | |
| GTTCATATGCACAAGCATCA+TGG | - | chr1.3:10432721-10432740 | MS.gene86289:intron | 40.0% | |
| TACAAAACTAAGGGCCTGTT+TGG | + | chr1.3:10432100-10432119 | None:intergenic | 40.0% | |
| TCGAATAAGCCAATCCAAAC+GGG | + | chr1.3:10431835-10431854 | None:intergenic | 40.0% | |
| TGATGACAGCGAAGATGAAT+GGG | - | chr1.3:10432519-10432538 | MS.gene86289:intron | 40.0% | |
| TGTAGTTGTGAAGGAGGATT+TGG | - | chr1.3:10432116-10432135 | MS.gene86289:CDS | 40.0% | |
| TTCAGCAAATCATTGTCACC+TGG | - | chr1.3:10433461-10433480 | MS.gene86289:intron | 40.0% | |
| TTGAAGCAGATGAACAGATC+AGG | - | chr1.3:10433574-10433593 | MS.gene86289:CDS | 40.0% | |
| ! | ATATACCTTTGTTGATGGGG+AGG | - | chr1.3:10431142-10431161 | MS.gene86289:CDS | 40.0% |
| ! | ATGGATGAGGATGATGATGA+TGG | - | chr1.3:10432631-10432650 | MS.gene86289:intron | 40.0% |
| ! | GCAATGTTATTTGCTGCTGA+TGG | + | chr1.3:10433350-10433369 | None:intergenic | 40.0% |
| ! | GGTTGATTCTGATGATGATC+TGG | - | chr1.3:10432546-10432565 | MS.gene86289:intron | 40.0% |
| ! | TATACCTTTGTTGATGGGGA+GGG | - | chr1.3:10431143-10431162 | MS.gene86289:CDS | 40.0% |
| ! | TTATGGTGATGATGACGATG+AGG | - | chr1.3:10432994-10433013 | MS.gene86289:intron | 40.0% |
| ! | TTTTGTATCCCTTGCCACAT+AGG | + | chr1.3:10432339-10432358 | None:intergenic | 40.0% |
| !! | AGTTCTGGACTTAAGATGCT+CGG | + | chr1.3:10432377-10432396 | None:intergenic | 40.0% |
| !! | GGGGAGGGTAAATTTGTTAT+GGG | - | chr1.3:10431158-10431177 | MS.gene86289:CDS | 40.0% |
| !! | GTGACAATGATTTGCTGAAG+TGG | + | chr1.3:10433460-10433479 | None:intergenic | 40.0% |
| !! | TCACAATTTGCTGCCTTGAT+TGG | + | chr1.3:10433543-10433562 | None:intergenic | 40.0% |
| !! | TGGGGAGGGTAAATTTGTTA+TGG | - | chr1.3:10431157-10431176 | MS.gene86289:CDS | 40.0% |
| !!! | ATTTTTCAGGTACAGGAGCA+TGG | - | chr1.3:10433504-10433523 | MS.gene86289:intron | 40.0% |
| !!! | TTTTTCAGGTACAGGAGCAT+GGG | - | chr1.3:10433505-10433524 | MS.gene86289:intron | 40.0% |
| AAAAAGGGCCATAGTGTGGT+GGG | - | chr1.3:10431738-10431757 | MS.gene86289:CDS | 45.0% | |
| AACAATGCTTCTGTCACTCC+AGG | + | chr1.3:10432244-10432263 | None:intergenic | 45.0% | |
| AAGGAGATAGCCAGTCAGAT+GGG | - | chr1.3:10432416-10432435 | MS.gene86289:intron | 45.0% | |
| AGCATATGCGTAGCAAGATG+GGG | - | chr1.3:10433602-10433621 | MS.gene86289:CDS | 45.0% | |
| ATCCAAAAAGGGCCATAGTG+TGG | - | chr1.3:10431734-10431753 | MS.gene86289:CDS | 45.0% | |
| GAGCATATGCGTAGCAAGAT+GGG | - | chr1.3:10433601-10433620 | MS.gene86289:CDS | 45.0% | |
| GCCAATCTAAAAGGGCTCAT+AGG | - | chr1.3:10431500-10431519 | MS.gene86289:CDS | 45.0% | |
| GGTAGCGAAAAATCACTGCA+AGG | - | chr1.3:10432967-10432986 | MS.gene86289:intron | 45.0% | |
| GTCCAGAACTCATATGATGC+GGG | - | chr1.3:10432387-10432406 | MS.gene86289:intron | 45.0% | |
| TCGCTACAATCTCAAACGCA+AGG | - | chr1.3:10430940-10430959 | MS.gene86289:CDS | 45.0% | |
| TGACATTGTTTGGCAGGTTC+CGG | + | chr1.3:10433645-10433664 | None:intergenic | 45.0% | |
| TGTGTCTGTACTGCAACGAT+CGG | - | chr1.3:10432903-10432922 | MS.gene86289:intron | 45.0% | |
| TTATAGCCTTCCCATCTGAC+TGG | + | chr1.3:10432429-10432448 | None:intergenic | 45.0% | |
| TTTACCCTCCCCATCAACAA+AGG | + | chr1.3:10431150-10431169 | None:intergenic | 45.0% | |
| ! | CCCTATGAGCCCTTTTAGAT+TGG | + | chr1.3:10431504-10431523 | None:intergenic | 45.0% |
| !! | TCAACCACTCTTTTAGGAGG+AGG | + | chr1.3:10432484-10432503 | None:intergenic | 45.0% |
| !! | TGAGGATGATGATGATGGTG+TGG | - | chr1.3:10432636-10432655 | MS.gene86289:intron | 45.0% |
| !! | AAATAAATTATCAAAAAATT+CGG | + | chr1.3:10430989-10431008 | None:intergenic | 5.0% |
| AAGCTGCACTTGCTCAAGAG+AGG | - | chr1.3:10432275-10432294 | MS.gene86289:CDS | 50.0% | |
| ACTGCTTCCAAGCTGCTGAA+AGG | + | chr1.3:10432935-10432954 | None:intergenic | 50.0% | |
| AGATAGCCAGTCAGATGGGA+AGG | - | chr1.3:10432420-10432439 | MS.gene86289:intron | 50.0% | |
| AGCCCTATGCTCTATAGCTG+TGG | - | chr1.3:10432313-10432332 | MS.gene86289:intron | 50.0% | |
| AGCTGCACTTGCTCAAGAGA+GGG | - | chr1.3:10432276-10432295 | MS.gene86289:CDS | 50.0% | |
| AGGCCACAGCTATAGAGCAT+AGG | + | chr1.3:10432319-10432338 | None:intergenic | 50.0% | |
| AGGTTCTATGCCGGTATGGT+GGG | - | chr1.3:10431769-10431788 | MS.gene86289:CDS | 50.0% | |
| CAAAAAGGGCCATAGTGTGG+TGG | - | chr1.3:10431737-10431756 | MS.gene86289:CDS | 50.0% | |
| CAAGCCTCCTCCTAAAAGAG+TGG | - | chr1.3:10432477-10432496 | MS.gene86289:intron | 50.0% | |
| CATTGCCGTTACTGCGGAAT+TGG | - | chr1.3:10433364-10433383 | MS.gene86289:intron | 50.0% | |
| CCTCACTTATCTTGGGCTGA+AGG | - | chr1.3:10432789-10432808 | MS.gene86289:intron | 50.0% | |
| CCTTCAGCCCAAGATAAGTG+AGG | + | chr1.3:10432792-10432811 | None:intergenic | 50.0% | |
| CGATGAGGAGGAAGTTGAGT+TGG | - | chr1.3:10433009-10433028 | MS.gene86289:intron | 50.0% | |
| CTCATAGGGCCTGTTTGGAT+TGG | - | chr1.3:10431515-10431534 | MS.gene86289:CDS | 50.0% | |
| CTCTATAGCTGTGGCCTATG+TGG | - | chr1.3:10432322-10432341 | MS.gene86289:intron | 50.0% | |
| GAAGGAGATAGCCAGTCAGA+TGG | - | chr1.3:10432415-10432434 | MS.gene86289:intron | 50.0% | |
| GAGGTTACCAGGTTCTATGC+CGG | - | chr1.3:10431760-10431779 | MS.gene86289:CDS | 50.0% | |
| GCAGATGAACAGATCAGGTG+TGG | - | chr1.3:10433579-10433598 | MS.gene86289:CDS | 50.0% | |
| GGAAGCAGTCAGGAAACACA+TGG | - | chr1.3:10432946-10432965 | MS.gene86289:intron | 50.0% | |
| GGAGCATATGCGTAGCAAGA+TGG | - | chr1.3:10433600-10433619 | MS.gene86289:CDS | 50.0% | |
| GGCCACAGCTATAGAGCATA+GGG | + | chr1.3:10432318-10432337 | None:intergenic | 50.0% | |
| GGGAAGCAGCTAGTTGTATC+TGG | - | chr1.3:10433194-10433213 | MS.gene86289:intron | 50.0% | |
| GTGTCATCCTTTCAGCAGCT+TGG | - | chr1.3:10432925-10432944 | MS.gene86289:intron | 50.0% | |
| TACCAGGTTCTATGCCGGTA+TGG | - | chr1.3:10431765-10431784 | MS.gene86289:CDS | 50.0% | |
| TGACAGCGAAGATGAATGGG+TGG | - | chr1.3:10432522-10432541 | MS.gene86289:intron | 50.0% | |
| TGCAGCCAATTCCGCAGTAA+CGG | + | chr1.3:10433372-10433391 | None:intergenic | 50.0% | |
| TTACTGCGGAATTGGCTGCA+AGG | - | chr1.3:10433372-10433391 | MS.gene86289:intron | 50.0% | |
| TTCACAACGCGTTGTGGAAG+TGG | + | chr1.3:10432457-10432476 | None:intergenic | 50.0% | |
| TTGCTGCCTTGATTGGACAG+TGG | + | chr1.3:10433536-10433555 | None:intergenic | 50.0% | |
| TTGTAGGATTAGGGCCCGTT+TGG | - | chr1.3:10431818-10431837 | MS.gene86289:CDS | 50.0% | |
| ! | CACCACACTATGGCCCTTTT+TGG | + | chr1.3:10431739-10431758 | None:intergenic | 50.0% |
| ! | TGACTGGCTATCTCCTTCAG+AGG | + | chr1.3:10432413-10432432 | None:intergenic | 50.0% |
| ! | TGGTGATGATGACGATGAGG+AGG | - | chr1.3:10432997-10433016 | MS.gene86289:intron | 50.0% |
| ! | TTATTTGCTGCTGATGGGCG+TGG | + | chr1.3:10433344-10433363 | None:intergenic | 50.0% |
| !! | TGGGAGGTGTTGCTAGTAGA+GGG | - | chr1.3:10431788-10431807 | MS.gene86289:CDS | 50.0% |
| AAATAGGTGGCTGGGGTTCC+TGG | - | chr1.3:10432223-10432242 | MS.gene86289:CDS | 55.0% | |
| AAGGGCTCATAGGGCCTGTT+TGG | - | chr1.3:10431510-10431529 | MS.gene86289:CDS | 55.0% | |
| AGCAACACCTCCCACCATAC+CGG | + | chr1.3:10431782-10431801 | None:intergenic | 55.0% | |
| AGCTGTGGCCTATGTGGCAA+GGG | - | chr1.3:10432328-10432347 | MS.gene86289:intron | 55.0% | |
| CACCATACCGGCATAGAACC+TGG | + | chr1.3:10431770-10431789 | None:intergenic | 55.0% | |
| CAGCGAAGATGAATGGGTGG+AGG | - | chr1.3:10432525-10432544 | MS.gene86289:intron | 55.0% | |
| CAGGTTCTATGCCGGTATGG+TGG | - | chr1.3:10431768-10431787 | MS.gene86289:CDS | 55.0% | |
| CATATGATGCGGGCCTCTGA+AGG | - | chr1.3:10432397-10432416 | MS.gene86289:intron | 55.0% | |
| GGATTAGGGCCCGTTTGGAT+TGG | - | chr1.3:10431823-10431842 | MS.gene86289:CDS | 55.0% | |
| GGCCCGCATCATATGAGTTC+TGG | + | chr1.3:10432392-10432411 | None:intergenic | 55.0% | |
| GGTAACCTCCCACCACACTA+TGG | + | chr1.3:10431749-10431768 | None:intergenic | 55.0% | |
| GTCTGGCCACTGTCCAATCA+AGG | - | chr1.3:10433527-10433546 | MS.gene86289:intron | 55.0% | |
| TAGCTGTGGCCTATGTGGCA+AGG | - | chr1.3:10432327-10432346 | MS.gene86289:intron | 55.0% | |
| TCAGCAGCTTGGAAGCAGTC+AGG | - | chr1.3:10432936-10432955 | MS.gene86289:intron | 55.0% | |
| ! | GGCTTGTTCACAACGCGTTG+TGG | + | chr1.3:10432463-10432482 | None:intergenic | 55.0% |
| ! | TAGTGTGGTGGGAGGTTACC+AGG | - | chr1.3:10431749-10431768 | MS.gene86289:CDS | 55.0% |
| ! | TTCTATGCCGGTATGGTGGG+AGG | - | chr1.3:10431772-10431791 | MS.gene86289:CDS | 55.0% |
| !! | GTGGGAGGTGTTGCTAGTAG+AGG | - | chr1.3:10431787-10431806 | MS.gene86289:CDS | 55.0% |
| ! | AAGGGCCATAGTGTGGTGGG+AGG | - | chr1.3:10431741-10431760 | MS.gene86289:CDS | 60.0% |
| ! | CAGGTACAGGAGCATGGGTC+TGG | - | chr1.3:10433510-10433529 | MS.gene86289:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 10430857 | 10433672 | 10430857 | ID=MS.gene86289 |
| chr1.3 | mRNA | 10430857 | 10433672 | 10430857 | ID=MS.gene86289.t1;Parent=MS.gene86289 |
| chr1.3 | exon | 10433568 | 10433672 | 10433568 | ID=MS.gene86289.t1.exon1;Parent=MS.gene86289.t1 |
| chr1.3 | CDS | 10433568 | 10433672 | 10433568 | ID=cds.MS.gene86289.t1;Parent=MS.gene86289.t1 |
| chr1.3 | exon | 10431719 | 10432300 | 10431719 | ID=MS.gene86289.t1.exon2;Parent=MS.gene86289.t1 |
| chr1.3 | CDS | 10431719 | 10432300 | 10431719 | ID=cds.MS.gene86289.t1;Parent=MS.gene86289.t1 |
| chr1.3 | exon | 10431473 | 10431642 | 10431473 | ID=MS.gene86289.t1.exon3;Parent=MS.gene86289.t1 |
| chr1.3 | CDS | 10431473 | 10431642 | 10431473 | ID=cds.MS.gene86289.t1;Parent=MS.gene86289.t1 |
| chr1.3 | exon | 10431136 | 10431351 | 10431136 | ID=MS.gene86289.t1.exon4;Parent=MS.gene86289.t1 |
| chr1.3 | CDS | 10431136 | 10431351 | 10431136 | ID=cds.MS.gene86289.t1;Parent=MS.gene86289.t1 |
| chr1.3 | exon | 10430857 | 10431016 | 10430857 | ID=MS.gene86289.t1.exon5;Parent=MS.gene86289.t1 |
| chr1.3 | CDS | 10430857 | 10431016 | 10430857 | ID=cds.MS.gene86289.t1;Parent=MS.gene86289.t1 |
| Gene Sequence |
| Protein sequence |
