Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54064.t1 | RHN76819.1 | 98 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 1.20E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54064.t1 | Q8H1G5 | 61.4 | 412 | 149 | 3 | 1 | 410 | 1 | 404 | 6.3e-131 | 468.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54064.t1 | A0A396JF03 | 98.0 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 8.6e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61069 | MS.gene54064 | PPI |
| MS.gene54064 | MS.gene86289 | PPI |
| MS.gene54064 | MS.gene061557 | PPI |
| MS.gene54064 | MS.gene008317 | PPI |
| MS.gene015887 | MS.gene54064 | PPI |
| MS.gene033230 | MS.gene54064 | PPI |
| MS.gene54064 | MS.gene05011 | PPI |
| MS.gene021568 | MS.gene54064 | PPI |
| MS.gene48391 | MS.gene54064 | PPI |
| MS.gene54064 | MS.gene049715 | PPI |
| MS.gene54064 | MS.gene60354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54064.t1 | MTR_1g009770 | 98.049 | 410 | 6 | 1 | 1 | 410 | 1 | 408 | 0.0 | 836 |
| MS.gene54064.t1 | MTR_1g047010 | 86.027 | 365 | 23 | 1 | 35 | 399 | 11 | 347 | 0.0 | 545 |
| MS.gene54064.t1 | MTR_5g061270 | 89.933 | 149 | 5 | 3 | 36 | 184 | 13 | 151 | 6.72e-85 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54064.t1 | AT4G31420 | 62.802 | 414 | 140 | 5 | 1 | 410 | 1 | 404 | 0.0 | 525 |
| MS.gene54064.t1 | AT4G31420 | 62.651 | 415 | 140 | 6 | 1 | 410 | 1 | 405 | 0.0 | 520 |
| MS.gene54064.t1 | AT2G24500 | 64.146 | 410 | 132 | 7 | 1 | 410 | 1 | 395 | 1.78e-180 | 508 |
Find 85 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGGTGGCTGGGGTTCC+TGG | 0.262196 | 1.2:-10365877 | MS.gene54064:intron |
| CATTGCCGTTACTGCGGAAT+TGG | 0.292956 | 1.2:-10364736 | MS.gene54064:CDS |
| TCACAATTTGCTGCCTTGAT+TGG | 0.324791 | 1.2:+10364560 | None:intergenic |
| TGACATTGTTTGGCAGGTTC+CGG | 0.326569 | 1.2:+10364458 | None:intergenic |
| GGCCCGCATCATATGAGTTC+TGG | 0.357386 | 1.2:+10365711 | None:intergenic |
| AATCACTGCAAGGTGCATTA+TGG | 0.365367 | 1.2:-10365123 | MS.gene54064:CDS |
| AAAGGACTCCTCACTTATCT+TGG | 0.381564 | 1.2:-10365319 | MS.gene54064:CDS |
| GACTAATATGTGACATTGTT+TGG | 0.402840 | 1.2:+10364448 | None:intergenic |
| GGGAAGCAGCTAGTTGTATC+TGG | 0.418173 | 1.2:-10364906 | MS.gene54064:CDS |
| CAGGTACAGGAGCATGGGTC+TGG | 0.422872 | 1.2:-10364590 | MS.gene54064:CDS |
| TTCACAACGCGTTGTGGAAG+TGG | 0.423028 | 1.2:+10365646 | None:intergenic |
| TCTTTCAAATACTCAACATC+TGG | 0.426978 | 1.2:+10365346 | None:intergenic |
| CGATGAGGAGGAAGTTGAGT+TGG | 0.431117 | 1.2:-10365091 | MS.gene54064:CDS |
| AATATGTGACATTGTTTGGC+AGG | 0.441386 | 1.2:+10364452 | None:intergenic |
| GATAATATCGCAAGTATTCA+CGG | 0.442099 | 1.2:+10364790 | None:intergenic |
| GAGCATATGCGTAGCAAGAT+GGG | 0.442807 | 1.2:-10364499 | MS.gene54064:CDS |
| GGTTGATTCTGATGATGATC+TGG | 0.452488 | 1.2:-10365554 | MS.gene54064:CDS |
| AGATAAGTGAGGAGTCCTTT+CGG | 0.464465 | 1.2:+10365322 | None:intergenic |
| CTCGTAATCACTAAGATGTC+TGG | 0.465514 | 1.2:-10364843 | MS.gene54064:CDS |
| TCAGCAGCTTGGAAGCAGTC+AGG | 0.483122 | 1.2:-10365164 | MS.gene54064:CDS |
| CTCTATAGCTGTGGCCTATG+TGG | 0.493641 | 1.2:-10365778 | MS.gene54064:CDS |
| GCAATGTTATTTGCTGCTGA+TGG | 0.493721 | 1.2:+10364753 | None:intergenic |
| AAGGACTCCTCACTTATCTT+GGG | 0.494172 | 1.2:-10365318 | MS.gene54064:CDS |
| ATCAGTTATGTTGATGAGCA+AGG | 0.498615 | 1.2:-10364927 | MS.gene54064:intron |
| GGAGCATATGCGTAGCAAGA+TGG | 0.510156 | 1.2:-10364500 | MS.gene54064:CDS |
| GTGTCATCCTTTCAGCAGCT+TGG | 0.510364 | 1.2:-10365175 | MS.gene54064:CDS |
| ATGATGACAGCGAAGATGAA+TGG | 0.513343 | 1.2:-10365582 | MS.gene54064:CDS |
| TTGAAGCAGATGAACAGATC+AGG | 0.519397 | 1.2:-10364526 | MS.gene54064:CDS |
| TTATTTGCTGCTGATGGGCG+TGG | 0.519564 | 1.2:+10364759 | None:intergenic |
| AACAATGCTTCTGTCACTCC+AGG | 0.527586 | 1.2:+10365859 | None:intergenic |
| CAAGGGATACAAAAGTGAAA+AGG | 0.530314 | 1.2:-10365755 | MS.gene54064:CDS |
| GGCCACAGCTATAGAGCATA+GGG | 0.531535 | 1.2:+10365785 | None:intergenic |
| AATTCTATGATTATACCAGC+AGG | 0.531778 | 1.2:-10365065 | MS.gene54064:intron |
| CAATGTTATTTGCTGCTGAT+GGG | 0.534127 | 1.2:+10364754 | None:intergenic |
| AGCTTCATTACAAATCTGAA+TGG | 0.537834 | 1.2:-10367186 | MS.gene54064:CDS |
| GTCTGGCCACTGTCCAATCA+AGG | 0.539255 | 1.2:-10364573 | MS.gene54064:CDS |
| GTTCATATGCACAAGCATCA+TGG | 0.541183 | 1.2:-10365379 | MS.gene54064:CDS |
| GGCTTGTTCACAACGCGTTG+TGG | 0.544393 | 1.2:+10365640 | None:intergenic |
| CCTCACTTATCTTGGGCTGA+AGG | 0.545136 | 1.2:-10365311 | MS.gene54064:intron |
| AATAATATAGAACTTAGTGA+TGG | 0.547640 | 1.2:-10364873 | MS.gene54064:CDS |
| GGATGAAGAGTAATGTGATC+CGG | 0.550803 | 1.2:-10364477 | MS.gene54064:CDS |
| AGATAGCCAGTCAGATGGGA+AGG | 0.554248 | 1.2:-10365680 | MS.gene54064:CDS |
| AGGCCACAGCTATAGAGCAT+AGG | 0.556759 | 1.2:+10365784 | None:intergenic |
| TTATAGCCTTCCCATCTGAC+TGG | 0.557046 | 1.2:+10365674 | None:intergenic |
| TGATGACAGCGAAGATGAAT+GGG | 0.559525 | 1.2:-10365581 | MS.gene54064:CDS |
| CATATGATGCGGGCCTCTGA+AGG | 0.561060 | 1.2:-10365703 | MS.gene54064:CDS |
| AAGGAGATAGCCAGTCAGAT+GGG | 0.563189 | 1.2:-10365684 | MS.gene54064:CDS |
| TAGCTGTGGCCTATGTGGCA+AGG | 0.563752 | 1.2:-10365773 | MS.gene54064:CDS |
| AGCTGTGGCCTATGTGGCAA+GGG | 0.564127 | 1.2:-10365772 | MS.gene54064:CDS |
| TCAGTTATGTTGATGAGCAA+GGG | 0.565263 | 1.2:-10364926 | MS.gene54064:intron |
| TGCAGCCAATTCCGCAGTAA+CGG | 0.565856 | 1.2:+10364731 | None:intergenic |
| GTCCAGAACTCATATGATGC+GGG | 0.567214 | 1.2:-10365713 | MS.gene54064:CDS |
| GAAGGAGATAGCCAGTCAGA+TGG | 0.569810 | 1.2:-10365685 | MS.gene54064:CDS |
| GTCCATGTTCATATCTGTCA+AGG | 0.582115 | 1.2:+10365513 | None:intergenic |
| ATAATATAGAACTTAGTGAT+GGG | 0.585912 | 1.2:-10364872 | MS.gene54064:CDS |
| AAGCTGCACTTGCTCAAGAG+AGG | 0.587647 | 1.2:-10365825 | MS.gene54064:CDS |
| ATAATATCGCAAGTATTCAC+GGG | 0.591542 | 1.2:+10364791 | None:intergenic |
| TTACTGCGGAATTGGCTGCA+AGG | 0.592515 | 1.2:-10364728 | MS.gene54064:intron |
| AGTTCTGGACTTAAGATGCT+CGG | 0.594295 | 1.2:+10365726 | None:intergenic |
| ACTGCTTCCAAGCTGCTGAA+AGG | 0.595871 | 1.2:+10365168 | None:intergenic |
| TGACTGGCTATCTCCTTCAG+AGG | 0.597575 | 1.2:+10365690 | None:intergenic |
| TGGTGATGATGACGATGAGG+AGG | 0.609158 | 1.2:-10365103 | MS.gene54064:CDS |
| AGCTGCACTTGCTCAAGAGA+GGG | 0.613236 | 1.2:-10365824 | MS.gene54064:CDS |
| GCAGATGAACAGATCAGGTG+TGG | 0.616562 | 1.2:-10364521 | MS.gene54064:CDS |
| TGTGTCTGTACTGCAACGAT+CGG | 0.620367 | 1.2:-10365197 | MS.gene54064:CDS |
| TGAGGATGATGATGATGGTG+TGG | 0.620914 | 1.2:-10365464 | MS.gene54064:CDS |
| CAAGCCTCCTCCTAAAAGAG+TGG | 0.623878 | 1.2:-10365623 | MS.gene54064:CDS |
| AGCCCTATGCTCTATAGCTG+TGG | 0.631941 | 1.2:-10365787 | MS.gene54064:CDS |
| TGAAAATGATGACATGGATG+AGG | 0.635872 | 1.2:-10365482 | MS.gene54064:CDS |
| TCGCTACAATCTCAAACGCA+AGG | 0.638657 | 1.2:-10367161 | MS.gene54064:intron |
| ATGGATGAGGATGATGATGA+TGG | 0.639127 | 1.2:-10365469 | MS.gene54064:CDS |
| AGTCCAGAACTCATATGATG+CGG | 0.639377 | 1.2:-10365714 | MS.gene54064:CDS |
| GAATGCTGAAAATGATGACA+TGG | 0.644358 | 1.2:-10365488 | MS.gene54064:CDS |
| AGCATATGCGTAGCAAGATG+GGG | 0.651281 | 1.2:-10364498 | MS.gene54064:CDS |
| AAATAACATTGCCGTTACTG+CGG | 0.661600 | 1.2:-10364742 | MS.gene54064:CDS |
| CAGCGAAGATGAATGGGTGG+AGG | 0.662429 | 1.2:-10365575 | MS.gene54064:CDS |
| CAAAACAATAGAAAACTGCA+TGG | 0.674368 | 1.2:-10365401 | MS.gene54064:CDS |
| TTGCTGCCTTGATTGGACAG+TGG | 0.675930 | 1.2:+10364567 | None:intergenic |
| CCTTCAGCCCAAGATAAGTG+AGG | 0.679666 | 1.2:+10365311 | None:intergenic |
| GAGTATTTGAAAGATCCGAA+AGG | 0.680398 | 1.2:-10365337 | MS.gene54064:CDS |
| GTCCTTGACAGATATGAACA+TGG | 0.683684 | 1.2:-10365515 | MS.gene54064:CDS |
| TGACAGCGAAGATGAATGGG+TGG | 0.689914 | 1.2:-10365578 | MS.gene54064:CDS |
| GGAAGCAGTCAGGAAACACA+TGG | 0.712768 | 1.2:-10365154 | MS.gene54064:CDS |
| TCACACATAAAACAACACGA+TGG | 0.725722 | 1.2:+10365433 | None:intergenic |
| TTATGGTGATGATGACGATG+AGG | 0.730109 | 1.2:-10365106 | MS.gene54064:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATAATTTATTTATAAGT+TGG | - | chr1.2:10364589-10364608 | MS.gene54064:CDS | 10.0% |
| !! | AAAAAAGAATATGTTTGATT+TGG | - | chr1.2:10366424-10366443 | MS.gene54064:intron | 15.0% |
| !! | TAACTGATAAAAAGAATATT+AGG | + | chr1.2:10366755-10366774 | None:intergenic | 15.0% |
| !!! | AATCAAACATATTCTTTTTT+TGG | + | chr1.2:10366424-10366443 | None:intergenic | 15.0% |
| !!! | ATCAAACATATTCTTTTTTT+GGG | + | chr1.2:10366423-10366442 | None:intergenic | 15.0% |
| !!! | ATTTATTTATAAGTTGGATT+TGG | - | chr1.2:10364595-10364614 | MS.gene54064:intron | 15.0% |
| !!! | TTCACTTTTGAAAAATAAAT+AGG | - | chr1.2:10365801-10365820 | MS.gene54064:CDS | 15.0% |
| !!! | TTTATATTCTGAAAATATAG+AGG | - | chr1.2:10365762-10365781 | MS.gene54064:CDS | 15.0% |
| !! | AATAATATAGAACTTAGTGA+TGG | - | chr1.2:10366821-10366840 | MS.gene54064:intron | 20.0% |
| !! | ATAATATAGAACTTAGTGAT+GGG | - | chr1.2:10366822-10366841 | MS.gene54064:intron | 20.0% |
| !! | TTTATATCCAATGTATCAAT+AGG | + | chr1.2:10366721-10366740 | None:intergenic | 20.0% |
| !!! | AAAGCTATTTCAATTACAAA+AGG | + | chr1.2:10365281-10365300 | None:intergenic | 20.0% |
| !!! | ACTTTTGAAAAATAAATAGG+TGG | - | chr1.2:10365804-10365823 | MS.gene54064:CDS | 20.0% |
| !!! | ATAAGTTTTGTGATAATGTT+TGG | - | chr1.2:10365463-10365482 | MS.gene54064:CDS | 20.0% |
| !!! | ATGTATCATAATATTGATTC+GGG | - | chr1.2:10364779-10364798 | MS.gene54064:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | - | chr1.2:10365316-10365335 | MS.gene54064:CDS | 20.0% |
| !!! | GATGAATATCTTAATTTTTC+AGG | - | chr1.2:10367085-10367104 | MS.gene54064:intron | 20.0% |
| !!! | GATGTATCATAATATTGATT+CGG | - | chr1.2:10364778-10364797 | MS.gene54064:CDS | 20.0% |
| !!! | GGTTATAAGTTGTTTTTATA+AGG | - | chr1.2:10364950-10364969 | MS.gene54064:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAAAA+GGG | - | chr1.2:10365317-10365336 | MS.gene54064:CDS | 20.0% |
| ! | AAAAAATCAACTAGAACTCT+AGG | - | chr1.2:10366878-10366897 | MS.gene54064:intron | 25.0% |
| ! | ATTAAACAGAAAATAGAGTG+CGG | + | chr1.2:10367008-10367027 | None:intergenic | 25.0% |
| ! | TGTTATATACCTTTGTTGAT+GGG | - | chr1.2:10364732-10364751 | MS.gene54064:CDS | 25.0% |
| ! | TTCACAGATATCAACAAAAA+TGG | + | chr1.2:10364703-10364722 | None:intergenic | 25.0% |
| ! | TTGTTATATACCTTTGTTGA+TGG | - | chr1.2:10364731-10364750 | MS.gene54064:CDS | 25.0% |
| ! | TTTCATAAGTTCTCCAAAAT+AGG | - | chr1.2:10365206-10365225 | MS.gene54064:CDS | 25.0% |
| !! | ACGTTGTATTGTTATTGTAT+AGG | - | chr1.2:10364929-10364948 | MS.gene54064:intron | 25.0% |
| !! | ACTGTTTTCATAACCTATTT+TGG | + | chr1.2:10365222-10365241 | None:intergenic | 25.0% |
| !! | TATTTTCTGTTTAATGCTGT+GGG | - | chr1.2:10367013-10367032 | MS.gene54064:intron | 25.0% |
| !! | TCTATAGGGGTAATTTTAAA+AGG | + | chr1.2:10366688-10366707 | None:intergenic | 25.0% |
| !!! | ACGTACAATTGTTTTTGTAT+AGG | + | chr1.2:10365574-10365593 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTATAAGGTCTAT+TGG | - | chr1.2:10364958-10364977 | MS.gene54064:intron | 25.0% |
| !!! | TATCTTAATTTTTCAGGTAC+AGG | - | chr1.2:10367091-10367110 | MS.gene54064:intron | 25.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1.2:10365677-10365696 | MS.gene54064:CDS | 30.0% | |
| AATTCTATGATTATACCAGC+AGG | - | chr1.2:10366629-10366648 | MS.gene54064:intron | 30.0% | |
| AGATATTCATCCATATTACC+AGG | + | chr1.2:10367076-10367095 | None:intergenic | 30.0% | |
| AGCTTCATTACAAATCTGAA+TGG | - | chr1.2:10364508-10364527 | MS.gene54064:CDS | 30.0% | |
| ATAATATCGCAAGTATTCAC+GGG | + | chr1.2:10366906-10366925 | None:intergenic | 30.0% | |
| ATAATGTTTGGTAGAACTGT+TGG | - | chr1.2:10365475-10365494 | MS.gene54064:CDS | 30.0% | |
| ATAGGTTATAAGTTGTCTAC+TGG | + | chr1.2:10365556-10365575 | None:intergenic | 30.0% | |
| ATTCGGGTATGATTATGTAT+AGG | - | chr1.2:10364795-10364814 | MS.gene54064:CDS | 30.0% | |
| CAAAACAATAGAAAACTGCA+TGG | - | chr1.2:10366293-10366312 | MS.gene54064:intron | 30.0% | |
| CTAATATCTTCCCAATTTGT+AGG | - | chr1.2:10366459-10366478 | MS.gene54064:intron | 30.0% | |
| CTCAATAAGCCAATCTAAAA+GGG | - | chr1.2:10365086-10365105 | MS.gene54064:CDS | 30.0% | |
| CTTCACAACTACAAAACTAA+GGG | + | chr1.2:10365703-10365722 | None:intergenic | 30.0% | |
| GATAATATCGCAAGTATTCA+CGG | + | chr1.2:10366907-10366926 | None:intergenic | 30.0% | |
| GTAAATAAACCAATCCAAAC+AGG | + | chr1.2:10365121-10365140 | None:intergenic | 30.0% | |
| GTTATATACCTTTGTTGATG+GGG | - | chr1.2:10364733-10364752 | MS.gene54064:CDS | 30.0% | |
| TCTTTCAAATACTCAACATC+TGG | + | chr1.2:10366351-10366370 | None:intergenic | 30.0% | |
| TGAAAAATAAATAGGTGGCT+GGG | - | chr1.2:10365809-10365828 | MS.gene54064:CDS | 30.0% | |
| TTAAACAGAAAATAGAGTGC+GGG | + | chr1.2:10367007-10367026 | None:intergenic | 30.0% | |
| TTCGGGTATGATTATGTATA+GGG | - | chr1.2:10364796-10364815 | MS.gene54064:CDS | 30.0% | |
| TTGAAAAATAAATAGGTGGC+TGG | - | chr1.2:10365808-10365827 | MS.gene54064:CDS | 30.0% | |
| ! | ATTTTCTGTTTAATGCTGTG+GGG | - | chr1.2:10367014-10367033 | MS.gene54064:intron | 30.0% |
| ! | CTATTTTCTGTTTAATGCTG+TGG | - | chr1.2:10367012-10367031 | MS.gene54064:intron | 30.0% |
| ! | GGAGAATTTTTGTAGGATTA+GGG | - | chr1.2:10365403-10365422 | MS.gene54064:CDS | 30.0% |
| ! | TCTCTTTTGACCTACAAATT+GGG | + | chr1.2:10366472-10366491 | None:intergenic | 30.0% |
| !!! | ACATATTCTTTTTTTGGGAG+AGG | + | chr1.2:10366418-10366437 | None:intergenic | 30.0% |
| !!! | CATATTCTTTTTTTGGGAGA+GGG | + | chr1.2:10366417-10366436 | None:intergenic | 30.0% |
| AAATAACATTGCCGTTACTG+CGG | - | chr1.2:10366952-10366971 | MS.gene54064:intron | 35.0% | |
| AATATGTGACATTGTTTGGC+AGG | + | chr1.2:10367245-10367264 | None:intergenic | 35.0% | |
| ATAGGCCTTACAGATTCTAT+AGG | + | chr1.2:10366703-10366722 | None:intergenic | 35.0% | |
| ATCATTGTCACCTGGTAATA+TGG | - | chr1.2:10367063-10367082 | MS.gene54064:intron | 35.0% | |
| CAAGGGATACAAAAGTGAAA+AGG | - | chr1.2:10365939-10365958 | MS.gene54064:intron | 35.0% | |
| CATGAGTTTATGATGCTGTT+TGG | + | chr1.2:10365050-10365069 | None:intergenic | 35.0% | |
| CCTTCACAACTACAAAACTA+AGG | + | chr1.2:10365704-10365723 | None:intergenic | 35.0% | |
| GAAAAATAAATAGGTGGCTG+GGG | - | chr1.2:10365810-10365829 | MS.gene54064:CDS | 35.0% | |
| GAATGCTGAAAATGATGACA+TGG | - | chr1.2:10366206-10366225 | MS.gene54064:intron | 35.0% | |
| GAGTATTTGAAAGATCCGAA+AGG | - | chr1.2:10366357-10366376 | MS.gene54064:intron | 35.0% | |
| GATTATGTATAGGGCATGTT+TGG | - | chr1.2:10364805-10364824 | MS.gene54064:CDS | 35.0% | |
| GCTCAATAAGCCAATCTAAA+AGG | - | chr1.2:10365085-10365104 | MS.gene54064:CDS | 35.0% | |
| TAGGCCTTACAGATTCTATA+GGG | + | chr1.2:10366702-10366721 | None:intergenic | 35.0% | |
| TCACACATAAAACAACACGA+TGG | + | chr1.2:10366264-10366283 | None:intergenic | 35.0% | |
| TGAAAATGATGACATGGATG+AGG | - | chr1.2:10366212-10366231 | MS.gene54064:intron | 35.0% | |
| TGTAAGGCCTATTGATACAT+TGG | - | chr1.2:10366711-10366730 | MS.gene54064:intron | 35.0% | |
| TTACCCCTATAGAATCTGTA+AGG | - | chr1.2:10366695-10366714 | MS.gene54064:intron | 35.0% | |
| ! | AGTAGAGGGAGAATTTTTGT+AGG | - | chr1.2:10365396-10365415 | MS.gene54064:CDS | 35.0% |
| ! | ATCAGTTATGTTGATGAGCA+AGG | - | chr1.2:10366767-10366786 | MS.gene54064:intron | 35.0% |
| ! | CAATGTTATTTGCTGCTGAT+GGG | + | chr1.2:10366943-10366962 | None:intergenic | 35.0% |
| ! | GAGTTATCAACCACTCTTTT+AGG | + | chr1.2:10366084-10366103 | None:intergenic | 35.0% |
| ! | GGGAGAATTTTTGTAGGATT+AGG | - | chr1.2:10365402-10365421 | MS.gene54064:CDS | 35.0% |
| ! | GTCTCTTTTGACCTACAAAT+TGG | + | chr1.2:10366473-10366492 | None:intergenic | 35.0% |
| ! | TCAGTTATGTTGATGAGCAA+GGG | - | chr1.2:10366768-10366787 | MS.gene54064:intron | 35.0% |
| ! | TTATCAACCACTCTTTTAGG+AGG | + | chr1.2:10366081-10366100 | None:intergenic | 35.0% |
| !! | AGGGTAAATTTGTTATGGGT+AGG | - | chr1.2:10364756-10364775 | MS.gene54064:CDS | 35.0% |
| !! | ATGCTGTTTGGTAGAACTTT+TGG | + | chr1.2:10365038-10365057 | None:intergenic | 35.0% |
| !! | GAACTTTTGGAAACAGCTTA+TGG | + | chr1.2:10365025-10365044 | None:intergenic | 35.0% |
| !! | GCGTACAAGTCTTTGAAATT+AGG | - | chr1.2:10364657-10364676 | MS.gene54064:intron | 35.0% |
| !!! | CCTTAGTTTTGTAGTTGTGA+AGG | - | chr1.2:10365701-10365720 | MS.gene54064:CDS | 35.0% |
| !!! | TAGTTTTGTAGTTGTGAAGG+AGG | - | chr1.2:10365704-10365723 | MS.gene54064:CDS | 35.0% |
| AAAGGACTCCTCACTTATCT+TGG | - | chr1.2:10366375-10366394 | MS.gene54064:intron | 40.0% | |
| AAGGACTCCTCACTTATCTT+GGG | - | chr1.2:10366376-10366395 | MS.gene54064:intron | 40.0% | |
| AATCACTGCAAGGTGCATTA+TGG | - | chr1.2:10366571-10366590 | MS.gene54064:intron | 40.0% | |
| AATGAATCGAACAAACCTGC+TGG | + | chr1.2:10366647-10366666 | None:intergenic | 40.0% | |
| AGATAAGTGAGGAGTCCTTT+CGG | + | chr1.2:10366375-10366394 | None:intergenic | 40.0% | |
| AGGCCTTACAGATTCTATAG+GGG | + | chr1.2:10366701-10366720 | None:intergenic | 40.0% | |
| AGTCCAGAACTCATATGATG+CGG | - | chr1.2:10365980-10365999 | MS.gene54064:intron | 40.0% | |
| ATGATGACAGCGAAGATGAA+TGG | - | chr1.2:10366112-10366131 | MS.gene54064:intron | 40.0% | |
| CCAATCTAAAAGGGCTCATA+GGG | - | chr1.2:10365095-10365114 | MS.gene54064:CDS | 40.0% | |
| CTCGAATAAGCCAATCCAAA+CGG | + | chr1.2:10365430-10365449 | None:intergenic | 40.0% | |
| CTCGTAATCACTAAGATGTC+TGG | - | chr1.2:10366851-10366870 | MS.gene54064:intron | 40.0% | |
| GAACTGTTGGAAGTAGCTTA+TGG | - | chr1.2:10365488-10365507 | MS.gene54064:CDS | 40.0% | |
| GGATGAAGAGTAATGTGATC+CGG | - | chr1.2:10367217-10367236 | MS.gene54064:CDS | 40.0% | |
| GTCCATGTTCATATCTGTCA+AGG | + | chr1.2:10366184-10366203 | None:intergenic | 40.0% | |
| GTCCTTGACAGATATGAACA+TGG | - | chr1.2:10366179-10366198 | MS.gene54064:intron | 40.0% | |
| GTTCATATGCACAAGCATCA+TGG | - | chr1.2:10366315-10366334 | MS.gene54064:intron | 40.0% | |
| TACAAAACTAAGGGCCTGTT+TGG | + | chr1.2:10365694-10365713 | None:intergenic | 40.0% | |
| TCGAATAAGCCAATCCAAAC+GGG | + | chr1.2:10365429-10365448 | None:intergenic | 40.0% | |
| TGATGACAGCGAAGATGAAT+GGG | - | chr1.2:10366113-10366132 | MS.gene54064:intron | 40.0% | |
| TGTAGTTGTGAAGGAGGATT+TGG | - | chr1.2:10365710-10365729 | MS.gene54064:CDS | 40.0% | |
| TTCAGCAAATCATTGTCACC+TGG | - | chr1.2:10367055-10367074 | MS.gene54064:intron | 40.0% | |
| TTGAAGCAGATGAACAGATC+AGG | - | chr1.2:10367168-10367187 | MS.gene54064:CDS | 40.0% | |
| ! | ATATACCTTTGTTGATGGGG+AGG | - | chr1.2:10364736-10364755 | MS.gene54064:CDS | 40.0% |
| ! | ATGGATGAGGATGATGATGA+TGG | - | chr1.2:10366225-10366244 | MS.gene54064:intron | 40.0% |
| ! | GCAATGTTATTTGCTGCTGA+TGG | + | chr1.2:10366944-10366963 | None:intergenic | 40.0% |
| ! | GGTTGATTCTGATGATGATC+TGG | - | chr1.2:10366140-10366159 | MS.gene54064:intron | 40.0% |
| ! | TATACCTTTGTTGATGGGGA+GGG | - | chr1.2:10364737-10364756 | MS.gene54064:CDS | 40.0% |
| ! | TTATGGTGATGATGACGATG+AGG | - | chr1.2:10366588-10366607 | MS.gene54064:intron | 40.0% |
| ! | TTTTGTATCCCTTGCCACAT+AGG | + | chr1.2:10365933-10365952 | None:intergenic | 40.0% |
| !! | AGTTCTGGACTTAAGATGCT+CGG | + | chr1.2:10365971-10365990 | None:intergenic | 40.0% |
| !! | GGGGAGGGTAAATTTGTTAT+GGG | - | chr1.2:10364752-10364771 | MS.gene54064:CDS | 40.0% |
| !! | GTGACAATGATTTGCTGAAG+TGG | + | chr1.2:10367054-10367073 | None:intergenic | 40.0% |
| !! | TCACAATTTGCTGCCTTGAT+TGG | + | chr1.2:10367137-10367156 | None:intergenic | 40.0% |
| !! | TGGGGAGGGTAAATTTGTTA+TGG | - | chr1.2:10364751-10364770 | MS.gene54064:CDS | 40.0% |
| !!! | ATTTTTCAGGTACAGGAGCA+TGG | - | chr1.2:10367098-10367117 | MS.gene54064:intron | 40.0% |
| !!! | TTTTTCAGGTACAGGAGCAT+GGG | - | chr1.2:10367099-10367118 | MS.gene54064:intron | 40.0% |
| AAAAAGGGCCATAGTGTGGT+GGG | - | chr1.2:10365332-10365351 | MS.gene54064:CDS | 45.0% | |
| AACAATGCTTCTGTCACTCC+AGG | + | chr1.2:10365838-10365857 | None:intergenic | 45.0% | |
| AAGGAGATAGCCAGTCAGAT+GGG | - | chr1.2:10366010-10366029 | MS.gene54064:intron | 45.0% | |
| AGCATATGCGTAGCAAGATG+GGG | - | chr1.2:10367196-10367215 | MS.gene54064:CDS | 45.0% | |
| ATCCAAAAAGGGCCATAGTG+TGG | - | chr1.2:10365328-10365347 | MS.gene54064:CDS | 45.0% | |
| GAGCATATGCGTAGCAAGAT+GGG | - | chr1.2:10367195-10367214 | MS.gene54064:CDS | 45.0% | |
| GCCAATCTAAAAGGGCTCAT+AGG | - | chr1.2:10365094-10365113 | MS.gene54064:CDS | 45.0% | |
| GGTAGCGAAAAATCACTGCA+AGG | - | chr1.2:10366561-10366580 | MS.gene54064:intron | 45.0% | |
| GTCCAGAACTCATATGATGC+GGG | - | chr1.2:10365981-10366000 | MS.gene54064:intron | 45.0% | |
| TCGCTACAATCTCAAACGCA+AGG | - | chr1.2:10364533-10364552 | MS.gene54064:CDS | 45.0% | |
| TGACATTGTTTGGCAGGTTC+CGG | + | chr1.2:10367239-10367258 | None:intergenic | 45.0% | |
| TGTGTCTGTACTGCAACGAT+CGG | - | chr1.2:10366497-10366516 | MS.gene54064:intron | 45.0% | |
| TTATAGCCTTCCCATCTGAC+TGG | + | chr1.2:10366023-10366042 | None:intergenic | 45.0% | |
| TTTACCCTCCCCATCAACAA+AGG | + | chr1.2:10364744-10364763 | None:intergenic | 45.0% | |
| ! | CCCTATGAGCCCTTTTAGAT+TGG | + | chr1.2:10365098-10365117 | None:intergenic | 45.0% |
| !! | TCAACCACTCTTTTAGGAGG+AGG | + | chr1.2:10366078-10366097 | None:intergenic | 45.0% |
| !! | TGAGGATGATGATGATGGTG+TGG | - | chr1.2:10366230-10366249 | MS.gene54064:intron | 45.0% |
| !! | AAATAAATTATCAAAAAATT+CGG | + | chr1.2:10364583-10364602 | None:intergenic | 5.0% |
| AAGCTGCACTTGCTCAAGAG+AGG | - | chr1.2:10365869-10365888 | MS.gene54064:CDS | 50.0% | |
| ACTGCTTCCAAGCTGCTGAA+AGG | + | chr1.2:10366529-10366548 | None:intergenic | 50.0% | |
| AGATAGCCAGTCAGATGGGA+AGG | - | chr1.2:10366014-10366033 | MS.gene54064:intron | 50.0% | |
| AGCCCTATGCTCTATAGCTG+TGG | - | chr1.2:10365907-10365926 | MS.gene54064:intron | 50.0% | |
| AGCTGCACTTGCTCAAGAGA+GGG | - | chr1.2:10365870-10365889 | MS.gene54064:CDS | 50.0% | |
| AGGCCACAGCTATAGAGCAT+AGG | + | chr1.2:10365913-10365932 | None:intergenic | 50.0% | |
| AGGTTCTATGCCGGTATGGT+GGG | - | chr1.2:10365363-10365382 | MS.gene54064:CDS | 50.0% | |
| CAAAAAGGGCCATAGTGTGG+TGG | - | chr1.2:10365331-10365350 | MS.gene54064:CDS | 50.0% | |
| CAAGCCTCCTCCTAAAAGAG+TGG | - | chr1.2:10366071-10366090 | MS.gene54064:intron | 50.0% | |
| CATTGCCGTTACTGCGGAAT+TGG | - | chr1.2:10366958-10366977 | MS.gene54064:intron | 50.0% | |
| CCTCACTTATCTTGGGCTGA+AGG | - | chr1.2:10366383-10366402 | MS.gene54064:intron | 50.0% | |
| CCTTCAGCCCAAGATAAGTG+AGG | + | chr1.2:10366386-10366405 | None:intergenic | 50.0% | |
| CGATGAGGAGGAAGTTGAGT+TGG | - | chr1.2:10366603-10366622 | MS.gene54064:intron | 50.0% | |
| CTCATAGGGCCTGTTTGGAT+TGG | - | chr1.2:10365109-10365128 | MS.gene54064:CDS | 50.0% | |
| CTCTATAGCTGTGGCCTATG+TGG | - | chr1.2:10365916-10365935 | MS.gene54064:intron | 50.0% | |
| GAAGGAGATAGCCAGTCAGA+TGG | - | chr1.2:10366009-10366028 | MS.gene54064:intron | 50.0% | |
| GAGGTTACCAGGTTCTATGC+CGG | - | chr1.2:10365354-10365373 | MS.gene54064:CDS | 50.0% | |
| GCAGATGAACAGATCAGGTG+TGG | - | chr1.2:10367173-10367192 | MS.gene54064:CDS | 50.0% | |
| GGAAGCAGTCAGGAAACACA+TGG | - | chr1.2:10366540-10366559 | MS.gene54064:intron | 50.0% | |
| GGAGCATATGCGTAGCAAGA+TGG | - | chr1.2:10367194-10367213 | MS.gene54064:CDS | 50.0% | |
| GGCCACAGCTATAGAGCATA+GGG | + | chr1.2:10365912-10365931 | None:intergenic | 50.0% | |
| GGGAAGCAGCTAGTTGTATC+TGG | - | chr1.2:10366788-10366807 | MS.gene54064:intron | 50.0% | |
| GTGTCATCCTTTCAGCAGCT+TGG | - | chr1.2:10366519-10366538 | MS.gene54064:intron | 50.0% | |
| TACCAGGTTCTATGCCGGTA+TGG | - | chr1.2:10365359-10365378 | MS.gene54064:CDS | 50.0% | |
| TGACAGCGAAGATGAATGGG+TGG | - | chr1.2:10366116-10366135 | MS.gene54064:intron | 50.0% | |
| TGCAGCCAATTCCGCAGTAA+CGG | + | chr1.2:10366966-10366985 | None:intergenic | 50.0% | |
| TTACTGCGGAATTGGCTGCA+AGG | - | chr1.2:10366966-10366985 | MS.gene54064:intron | 50.0% | |
| TTCACAACGCGTTGTGGAAG+TGG | + | chr1.2:10366051-10366070 | None:intergenic | 50.0% | |
| TTGCTGCCTTGATTGGACAG+TGG | + | chr1.2:10367130-10367149 | None:intergenic | 50.0% | |
| TTGTAGGATTAGGGCCCGTT+TGG | - | chr1.2:10365412-10365431 | MS.gene54064:CDS | 50.0% | |
| ! | CACCACACTATGGCCCTTTT+TGG | + | chr1.2:10365333-10365352 | None:intergenic | 50.0% |
| ! | TGACTGGCTATCTCCTTCAG+AGG | + | chr1.2:10366007-10366026 | None:intergenic | 50.0% |
| ! | TGGTGATGATGACGATGAGG+AGG | - | chr1.2:10366591-10366610 | MS.gene54064:intron | 50.0% |
| ! | TTATTTGCTGCTGATGGGCG+TGG | + | chr1.2:10366938-10366957 | None:intergenic | 50.0% |
| !! | TGGGAGGTGTTGCTAGTAGA+GGG | - | chr1.2:10365382-10365401 | MS.gene54064:CDS | 50.0% |
| AAATAGGTGGCTGGGGTTCC+TGG | - | chr1.2:10365817-10365836 | MS.gene54064:CDS | 55.0% | |
| AAGGGCTCATAGGGCCTGTT+TGG | - | chr1.2:10365104-10365123 | MS.gene54064:CDS | 55.0% | |
| AGCAACACCTCCCACCATAC+CGG | + | chr1.2:10365376-10365395 | None:intergenic | 55.0% | |
| AGCTGTGGCCTATGTGGCAA+GGG | - | chr1.2:10365922-10365941 | MS.gene54064:intron | 55.0% | |
| CACCATACCGGCATAGAACC+TGG | + | chr1.2:10365364-10365383 | None:intergenic | 55.0% | |
| CAGCGAAGATGAATGGGTGG+AGG | - | chr1.2:10366119-10366138 | MS.gene54064:intron | 55.0% | |
| CAGGTTCTATGCCGGTATGG+TGG | - | chr1.2:10365362-10365381 | MS.gene54064:CDS | 55.0% | |
| CATATGATGCGGGCCTCTGA+AGG | - | chr1.2:10365991-10366010 | MS.gene54064:intron | 55.0% | |
| GGATTAGGGCCCGTTTGGAT+TGG | - | chr1.2:10365417-10365436 | MS.gene54064:CDS | 55.0% | |
| GGCCCGCATCATATGAGTTC+TGG | + | chr1.2:10365986-10366005 | None:intergenic | 55.0% | |
| GGTAACCTCCCACCACACTA+TGG | + | chr1.2:10365343-10365362 | None:intergenic | 55.0% | |
| GTCTGGCCACTGTCCAATCA+AGG | - | chr1.2:10367121-10367140 | MS.gene54064:intron | 55.0% | |
| TAGCTGTGGCCTATGTGGCA+AGG | - | chr1.2:10365921-10365940 | MS.gene54064:intron | 55.0% | |
| TCAGCAGCTTGGAAGCAGTC+AGG | - | chr1.2:10366530-10366549 | MS.gene54064:intron | 55.0% | |
| ! | GGCTTGTTCACAACGCGTTG+TGG | + | chr1.2:10366057-10366076 | None:intergenic | 55.0% |
| ! | TAGTGTGGTGGGAGGTTACC+AGG | - | chr1.2:10365343-10365362 | MS.gene54064:CDS | 55.0% |
| ! | TTCTATGCCGGTATGGTGGG+AGG | - | chr1.2:10365366-10365385 | MS.gene54064:CDS | 55.0% |
| !! | GTGGGAGGTGTTGCTAGTAG+AGG | - | chr1.2:10365381-10365400 | MS.gene54064:CDS | 55.0% |
| ! | AAGGGCCATAGTGTGGTGGG+AGG | - | chr1.2:10365335-10365354 | MS.gene54064:CDS | 60.0% |
| ! | CAGGTACAGGAGCATGGGTC+TGG | - | chr1.2:10367104-10367123 | MS.gene54064:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 10364450 | 10367266 | 10364450 | ID=MS.gene54064 |
| chr1.2 | mRNA | 10364450 | 10367266 | 10364450 | ID=MS.gene54064.t1;Parent=MS.gene54064 |
| chr1.2 | exon | 10367162 | 10367266 | 10367162 | ID=MS.gene54064.t1.exon1;Parent=MS.gene54064.t1 |
| chr1.2 | CDS | 10367162 | 10367266 | 10367162 | ID=cds.MS.gene54064.t1;Parent=MS.gene54064.t1 |
| chr1.2 | exon | 10365312 | 10365893 | 10365312 | ID=MS.gene54064.t1.exon2;Parent=MS.gene54064.t1 |
| chr1.2 | CDS | 10365312 | 10365893 | 10365312 | ID=cds.MS.gene54064.t1;Parent=MS.gene54064.t1 |
| chr1.2 | exon | 10365066 | 10365235 | 10365066 | ID=MS.gene54064.t1.exon3;Parent=MS.gene54064.t1 |
| chr1.2 | CDS | 10365066 | 10365235 | 10365066 | ID=cds.MS.gene54064.t1;Parent=MS.gene54064.t1 |
| chr1.2 | exon | 10364729 | 10364944 | 10364729 | ID=MS.gene54064.t1.exon4;Parent=MS.gene54064.t1 |
| chr1.2 | CDS | 10364729 | 10364944 | 10364729 | ID=cds.MS.gene54064.t1;Parent=MS.gene54064.t1 |
| chr1.2 | exon | 10364450 | 10364609 | 10364450 | ID=MS.gene54064.t1.exon5;Parent=MS.gene54064.t1 |
| chr1.2 | CDS | 10364450 | 10364609 | 10364450 | ID=cds.MS.gene54064.t1;Parent=MS.gene54064.t1 |
| Gene Sequence |
| Protein sequence |
