Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015887.t1 | RHN76819.1 | 97.6 | 375 | 7 | 1 | 22 | 396 | 36 | 408 | 1.20E-173 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015887.t1 | Q8H1G5 | 60.5 | 377 | 139 | 3 | 22 | 396 | 36 | 404 | 3.4e-113 | 409.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015887.t1 | A0A396JF03 | 97.6 | 375 | 7 | 1 | 22 | 396 | 36 | 408 | 8.4e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015887 | MS.gene61069 | PPI |
| MS.gene015887 | MS.gene60354 | PPI |
| MS.gene015887 | MS.gene48391 | PPI |
| MS.gene015887 | MS.gene86289 | PPI |
| MS.gene015887 | MS.gene049715 | PPI |
| MS.gene015887 | MS.gene54064 | PPI |
| MS.gene015887 | MS.gene061557 | PPI |
| MS.gene033230 | MS.gene015887 | PPI |
| MS.gene015887 | MS.gene008317 | PPI |
| MS.gene015887 | MS.gene05011 | PPI |
| MS.gene015887 | MS.gene021568 | PPI |
| MS.gene021568 | MS.gene015887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015887.t1 | MTR_1g009770 | 97.600 | 375 | 7 | 1 | 22 | 396 | 36 | 408 | 0.0 | 758 |
| MS.gene015887.t1 | MTR_1g047010 | 85.989 | 364 | 23 | 1 | 22 | 385 | 12 | 347 | 0.0 | 543 |
| MS.gene015887.t1 | MTR_5g061270 | 89.583 | 144 | 7 | 2 | 10 | 153 | 1 | 136 | 1.13e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015887.t1 | AT4G31420 | 62.005 | 379 | 130 | 5 | 22 | 396 | 36 | 404 | 1.01e-164 | 468 |
| MS.gene015887.t1 | AT4G31420 | 61.842 | 380 | 130 | 6 | 22 | 396 | 36 | 405 | 6.67e-163 | 463 |
| MS.gene015887.t1 | AT2G24500 | 62.400 | 375 | 126 | 7 | 22 | 396 | 36 | 395 | 3.96e-155 | 443 |
Find 85 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGGTGGCTGGGGTTCC+TGG | 0.262196 | 1.1:-10047904 | MS.gene015887:intron |
| CATTGCCGTTACTGCGGAAT+TGG | 0.292956 | 1.1:-10046758 | MS.gene015887:CDS |
| TCACAATTTGCTGCCTTGAT+TGG | 0.324791 | 1.1:+10046583 | None:intergenic |
| TGACATTGTTTGGCAAGTTC+CGG | 0.337595 | 1.1:+10046481 | None:intergenic |
| GACTAATATGTGACATTGTT+TGG | 0.341862 | 1.1:+10046471 | None:intergenic |
| AGATAAGTGAGGAGTCCTTT+TGG | 0.345385 | 1.1:+10047349 | None:intergenic |
| AGCCCGCATCATATGAGTTC+TGG | 0.347803 | 1.1:+10047738 | None:intergenic |
| TACCAGGTTCTATGTTGATA+TGG | 0.363231 | 1.1:-10048373 | MS.gene015887:intron |
| AATCACTGCAAGGTGCATTA+TGG | 0.365367 | 1.1:-10047144 | MS.gene015887:CDS |
| TGCCAGTAGAGGGAAAATTT+TGG | 0.365701 | 1.1:-10048340 | MS.gene015887:intron |
| AAAGGACTCCTCACTTATCT+TGG | 0.366782 | 1.1:-10047346 | MS.gene015887:CDS |
| CAGGTACAGGAGCATGGGTC+TGG | 0.422872 | 1.1:-10046613 | MS.gene015887:CDS |
| CGATGAGGAGGAAGTTGAGT+TGG | 0.431117 | 1.1:-10047112 | MS.gene015887:CDS |
| TCTTTCAAATACTCAACATC+TGG | 0.435137 | 1.1:+10047373 | None:intergenic |
| TTCACAACGCGTTGTGGAAG+TGG | 0.438222 | 1.1:+10047673 | None:intergenic |
| GATAATATCGCAAGTATTCA+CGG | 0.442099 | 1.1:+10046812 | None:intergenic |
| GAGCATATGCGTAGCAAGAT+GGG | 0.442807 | 1.1:-10046522 | MS.gene015887:CDS |
| GGTTGATTCTGATGATGATC+TGG | 0.452488 | 1.1:-10047581 | MS.gene015887:CDS |
| TCAGCAGCTTGGAAGCTGTC+AGG | 0.456791 | 1.1:-10047185 | MS.gene015887:CDS |
| CTCGTAATCACTAAGATGTC+TGG | 0.465514 | 1.1:-10046865 | MS.gene015887:CDS |
| ATGATGACAGTGAAGATGAA+TGG | 0.473652 | 1.1:-10047609 | MS.gene015887:CDS |
| GCAATGTTATTCGCTGCTGA+TGG | 0.478044 | 1.1:+10046775 | None:intergenic |
| TTATAGCCTTCCCGTCTGAC+TGG | 0.478887 | 1.1:+10047701 | None:intergenic |
| CTCTATAGTTGTGGCCTATG+TGG | 0.492858 | 1.1:-10047805 | MS.gene015887:CDS |
| AAGGACTCCTCACTTATCTT+GGG | 0.496191 | 1.1:-10047345 | MS.gene015887:CDS |
| ATCAGTTATGTTGATGAGCA+AGG | 0.498615 | 1.1:-10046949 | MS.gene015887:intron |
| GGAGCATATGCGTAGCAAGA+TGG | 0.510156 | 1.1:-10046523 | MS.gene015887:CDS |
| GTGTCATCCTTTCAGCAGCT+TGG | 0.510364 | 1.1:-10047196 | MS.gene015887:CDS |
| CAATGTTATTCGCTGCTGAT+GGG | 0.511853 | 1.1:+10046776 | None:intergenic |
| GGCTTATTCACAACGCGTTG+TGG | 0.513671 | 1.1:+10047667 | None:intergenic |
| TTGAAGCAGATGAACAGATC+AGG | 0.519397 | 1.1:-10046549 | MS.gene015887:CDS |
| AACAATGCTTCTGTCACTCC+AGG | 0.527586 | 1.1:+10047886 | None:intergenic |
| CAAGGGATACAAAAGTGAAA+AGG | 0.530314 | 1.1:-10047782 | MS.gene015887:CDS |
| AATTCTATGATTATACCAGC+AGG | 0.531778 | 1.1:-10047086 | MS.gene015887:intron |
| GGCCACAACTATAGAGCATA+GGG | 0.536135 | 1.1:+10047812 | None:intergenic |
| TTATTCGCTGCTGATGGGCG+TGG | 0.537064 | 1.1:+10046781 | None:intergenic |
| GTCTGGCCACTGTCCAATCA+AGG | 0.539255 | 1.1:-10046596 | MS.gene015887:CDS |
| GTTCATATGCACAAGCATCA+TGG | 0.541183 | 1.1:-10047406 | MS.gene015887:CDS |
| CCTCACTTATCTTGGGCTGA+AGG | 0.545136 | 1.1:-10047338 | MS.gene015887:intron |
| AATAATATAGAACTTAGTGA+TGG | 0.547640 | 1.1:-10046895 | MS.gene015887:CDS |
| GGATGAAGAGTAATGTGATC+CGG | 0.550803 | 1.1:-10046500 | MS.gene015887:CDS |
| TGATGACAGTGAAGATGAAT+GGG | 0.554010 | 1.1:-10047608 | MS.gene015887:CDS |
| AAGGAGATAGCCAGTCAGAC+GGG | 0.560516 | 1.1:-10047711 | MS.gene015887:CDS |
| TCAGTTATGTTGATGAGCAA+GGG | 0.565263 | 1.1:-10046948 | MS.gene015887:intron |
| TGCAGCCAATTCCGCAGTAA+CGG | 0.565856 | 1.1:+10046753 | None:intergenic |
| CATATGATGCGGGCTTCTGA+AGG | 0.566749 | 1.1:-10047730 | MS.gene015887:CDS |
| GTCCAGAACTCATATGATGC+GGG | 0.567214 | 1.1:-10047740 | MS.gene015887:CDS |
| GAGTATTTGAAAGATCCAAA+AGG | 0.569278 | 1.1:-10047364 | MS.gene015887:CDS |
| ACAGCTTCCAAGCTGCTGAA+AGG | 0.569949 | 1.1:+10047189 | None:intergenic |
| AGGCCACAACTATAGAGCAT+AGG | 0.571847 | 1.1:+10047811 | None:intergenic |
| GTGAGAGGTGTTGCCAGTAG+AGG | 0.574858 | 1.1:-10048351 | MS.gene015887:CDS |
| TAGTTGTGGCCTATGTGGCA+AGG | 0.577801 | 1.1:-10047800 | MS.gene015887:CDS |
| AGATAGCCAGTCAGACGGGA+AGG | 0.580938 | 1.1:-10047707 | MS.gene015887:CDS |
| GTCCATGTTCATATCTGTCA+AGG | 0.582115 | 1.1:+10047540 | None:intergenic |
| ATAATATAGAACTTAGTGAT+GGG | 0.585912 | 1.1:-10046894 | MS.gene015887:CDS |
| TGAGAGGTGTTGCCAGTAGA+GGG | 0.586480 | 1.1:-10048350 | MS.gene015887:CDS |
| AAGCTGCACTTGCTCAAGAG+AGG | 0.587647 | 1.1:-10047852 | MS.gene015887:CDS |
| AGCCCTATGCTCTATAGTTG+TGG | 0.588323 | 1.1:-10047814 | MS.gene015887:CDS |
| ATAATATCGCAAGTATTCAC+GGG | 0.591542 | 1.1:+10046813 | None:intergenic |
| TTACTGCGGAATTGGCTGCA+AGG | 0.592515 | 1.1:-10046750 | MS.gene015887:intron |
| AGTTCTGGACTTAAGATGCT+CGG | 0.594295 | 1.1:+10047753 | None:intergenic |
| TCACACATAAAACAACATGA+TGG | 0.598114 | 1.1:+10047460 | None:intergenic |
| GAAGGAGATAGCCAGTCAGA+CGG | 0.598868 | 1.1:-10047712 | MS.gene015887:CDS |
| AGTTGTGGCCTATGTGGCAA+GGG | 0.605031 | 1.1:-10047799 | MS.gene015887:CDS |
| TGGTGATGATGACGATGAGG+AGG | 0.609158 | 1.1:-10047124 | MS.gene015887:CDS |
| AGCTGCACTTGCTCAAGAGA+GGG | 0.613236 | 1.1:-10047851 | MS.gene015887:CDS |
| GCAGATGAACAGATCAGGTG+TGG | 0.616562 | 1.1:-10046544 | MS.gene015887:CDS |
| CAGTGAAGATGAATGGGTGG+AGG | 0.618062 | 1.1:-10047602 | MS.gene015887:CDS |
| TGTGTCTGTACTGCAACGAT+CGG | 0.620367 | 1.1:-10047218 | MS.gene015887:CDS |
| TGAGGATGATGATGATGGTG+TGG | 0.620914 | 1.1:-10047491 | MS.gene015887:CDS |
| GAATAACATTGCCGTTACTG+CGG | 0.628859 | 1.1:-10046764 | MS.gene015887:CDS |
| AGTCCAGAACTCATATGATG+CGG | 0.632568 | 1.1:-10047741 | MS.gene015887:CDS |
| TAAGCCTCCTCCTAAAAGAG+TGG | 0.633975 | 1.1:-10047650 | MS.gene015887:CDS |
| TGAAAATGATGACATGGATG+AGG | 0.635872 | 1.1:-10047509 | MS.gene015887:CDS |
| ATGGATGAGGATGATGATGA+TGG | 0.639127 | 1.1:-10047496 | MS.gene015887:CDS |
| GAATGCTGAAAATGATGACA+TGG | 0.644358 | 1.1:-10047515 | MS.gene015887:CDS |
| TGACAGTGAAGATGAATGGG+TGG | 0.651142 | 1.1:-10047605 | MS.gene015887:CDS |
| AGCATATGCGTAGCAAGATG+GGG | 0.651281 | 1.1:-10046521 | MS.gene015887:CDS |
| TTCTATGTTGATATGGTGAG+AGG | 0.662087 | 1.1:-10048366 | MS.gene015887:CDS |
| CAAAACAATAGAAAACTGCA+TGG | 0.674368 | 1.1:-10047428 | MS.gene015887:CDS |
| TTGCTGCCTTGATTGGACAG+TGG | 0.675930 | 1.1:+10046590 | None:intergenic |
| CCTTCAGCCCAAGATAAGTG+AGG | 0.679666 | 1.1:+10047338 | None:intergenic |
| GTCCTTGACAGATATGAACA+TGG | 0.683684 | 1.1:-10047542 | MS.gene015887:CDS |
| GGAAGCTGTCAGGAAACACA+TGG | 0.707846 | 1.1:-10047175 | MS.gene015887:CDS |
| TTATGGTGATGATGACGATG+AGG | 0.730109 | 1.1:-10047127 | MS.gene015887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAATGAAAATTTTGT+AGG | - | chr1.1:10046726-10046745 | MS.gene015887:intron | 10.0% |
| !!! | TATACTATAAGTTTTTTTAT+GGG | - | chr1.1:10046799-10046818 | MS.gene015887:CDS | 10.0% |
| !!! | TATTAAATGAAAATTTTGTA+GGG | - | chr1.1:10046727-10046746 | MS.gene015887:intron | 10.0% |
| !!! | TTATACTATAAGTTTTTTTA+TGG | - | chr1.1:10046798-10046817 | MS.gene015887:CDS | 10.0% |
| !! | TAACTGATAAAAAGAATATT+AGG | + | chr1.1:10048826-10048845 | None:intergenic | 15.0% |
| !! | TTTATAGCAAAAGATAAATA+AGG | - | chr1.1:10046961-10046980 | MS.gene015887:intron | 15.0% |
| !!! | ATACTATAAGTTTTTTTATG+GGG | - | chr1.1:10046800-10046819 | MS.gene015887:CDS | 15.0% |
| !!! | TTCACTTTTGAAAAATAAAT+AGG | - | chr1.1:10047867-10047886 | MS.gene015887:CDS | 15.0% |
| !!! | TTGATAATTTATTTACAAGT+TGG | - | chr1.1:10046616-10046635 | MS.gene015887:intron | 15.0% |
| !! | AAAAAAGAATATGTTTGGTT+TGG | - | chr1.1:10048495-10048514 | MS.gene015887:intron | 20.0% |
| !! | AATAATATAGAACTTAGTGA+TGG | - | chr1.1:10048892-10048911 | MS.gene015887:intron | 20.0% |
| !! | ATAATATAGAACTTAGTGAT+GGG | - | chr1.1:10048893-10048912 | MS.gene015887:intron | 20.0% |
| !! | ATTAGTGTTTGGTTATATAT+AGG | - | chr1.1:10046863-10046882 | MS.gene015887:CDS | 20.0% |
| !! | TTAGTGTTTGGTTATATATA+GGG | - | chr1.1:10046864-10046883 | MS.gene015887:CDS | 20.0% |
| !! | TTTATATCCAATGTATCAAT+AGG | + | chr1.1:10048792-10048811 | None:intergenic | 20.0% |
| !! | TTTGTATCTTGAAAATATAG+AGG | - | chr1.1:10047828-10047847 | MS.gene015887:CDS | 20.0% |
| !!! | AACCAAACATATTCTTTTTT+TGG | + | chr1.1:10048495-10048514 | None:intergenic | 20.0% |
| !!! | ACCAAACATATTCTTTTTTT+GGG | + | chr1.1:10048494-10048513 | None:intergenic | 20.0% |
| !!! | ACTTTTGAAAAATAAATAGG+TGG | - | chr1.1:10047870-10047889 | MS.gene015887:CDS | 20.0% |
| !!! | ATTTATTTACAAGTTGGATT+TGG | - | chr1.1:10046622-10046641 | MS.gene015887:intron | 20.0% |
| !!! | GATGAATATCTTAATTTTTC+AGG | - | chr1.1:10049155-10049174 | MS.gene015887:intron | 20.0% |
| ! | AAAAAATCAACTAGAACTCT+AGG | - | chr1.1:10048949-10048968 | MS.gene015887:intron | 25.0% |
| ! | ATTAAACAGAAAATAGAGTG+CGG | + | chr1.1:10049079-10049098 | None:intergenic | 25.0% |
| ! | CTAATATCTTTCCAATTTGT+AGG | - | chr1.1:10048531-10048550 | MS.gene015887:intron | 25.0% |
| ! | TCCCAAAAAAAGAATATGTT+TGG | - | chr1.1:10048490-10048509 | MS.gene015887:intron | 25.0% |
| ! | TTTCATAAATTCTCCAAGAT+AGG | - | chr1.1:10047261-10047280 | MS.gene015887:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCATAC+AGG | - | chr1.1:10047371-10047390 | MS.gene015887:CDS | 25.0% |
| !! | TATTTTCTGTTTAATGCTGT+GGG | - | chr1.1:10049084-10049103 | MS.gene015887:intron | 25.0% |
| !! | TCAAAATATCGATTAGTGTT+TGG | - | chr1.1:10046852-10046871 | MS.gene015887:CDS | 25.0% |
| !! | TCTATAGGGGTAATTTTAAA+AGG | + | chr1.1:10048759-10048778 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCATACA+GGG | - | chr1.1:10047372-10047391 | MS.gene015887:CDS | 25.0% |
| !!! | AAGCTCAATTGTTTTTGTAT+AGG | + | chr1.1:10047642-10047661 | None:intergenic | 25.0% |
| !!! | AGTCTTTGAAATTAGGTTAA+AGG | - | chr1.1:10046687-10046706 | MS.gene015887:intron | 25.0% |
| !!! | GTCTTTGAAATTAGGTTAAA+GGG | - | chr1.1:10046688-10046707 | MS.gene015887:intron | 25.0% |
| !!! | TATAAGTTTTTTTATGGGGA+GGG | - | chr1.1:10046804-10046823 | MS.gene015887:CDS | 25.0% |
| !!! | TATCTTAATTTTTCAGGTAC+AGG | - | chr1.1:10049161-10049180 | MS.gene015887:intron | 25.0% |
| AATTCTATGATTATACCAGC+AGG | - | chr1.1:10048701-10048720 | MS.gene015887:intron | 30.0% | |
| AGATATTCATCCATATTACC+AGG | + | chr1.1:10049146-10049165 | None:intergenic | 30.0% | |
| AGCTTCATTACAAATCTGAA+TGG | - | chr1.1:10046531-10046550 | MS.gene015887:CDS | 30.0% | |
| ATAATATCGCAAGTATTCAC+GGG | + | chr1.1:10048977-10048996 | None:intergenic | 30.0% | |
| ATACTGTTTGGTAGAACTTT+CGG | + | chr1.1:10047090-10047109 | None:intergenic | 30.0% | |
| CAAAACAATAGAAAACTGCA+TGG | - | chr1.1:10048359-10048378 | MS.gene015887:CDS | 30.0% | |
| CAAGAGTTATACCAAACAAA+CGG | + | chr1.1:10047535-10047554 | None:intergenic | 30.0% | |
| CATAAGTTTGTGATACTGTT+TGG | + | chr1.1:10047102-10047121 | None:intergenic | 30.0% | |
| CTTATGCTGATAGATAGATA+AGG | - | chr1.1:10047116-10047135 | MS.gene015887:CDS | 30.0% | |
| CTTCACAACTACAAAACTAA+GGG | + | chr1.1:10047769-10047788 | None:intergenic | 30.0% | |
| GAGTATTTGAAAGATCCAAA+AGG | - | chr1.1:10048423-10048442 | MS.gene015887:intron | 30.0% | |
| GATAATATCGCAAGTATTCA+CGG | + | chr1.1:10048978-10048997 | None:intergenic | 30.0% | |
| GCTTATTTGAGCTTATCTAT+CGG | - | chr1.1:10047494-10047513 | MS.gene015887:CDS | 30.0% | |
| GTCAAATTAGCCAATGTAAA+CGG | - | chr1.1:10047138-10047157 | MS.gene015887:CDS | 30.0% | |
| TCAAATTAGCCAATGTAAAC+GGG | - | chr1.1:10047139-10047158 | MS.gene015887:CDS | 30.0% | |
| TCACACATAAAACAACATGA+TGG | + | chr1.1:10048330-10048349 | None:intergenic | 30.0% | |
| TCTTTCAAATACTCAACATC+TGG | + | chr1.1:10048417-10048436 | None:intergenic | 30.0% | |
| TGAAAAATAAATAGGTGGCT+GGG | - | chr1.1:10047875-10047894 | MS.gene015887:CDS | 30.0% | |
| TTAAACAGAAAATAGAGTGC+GGG | + | chr1.1:10049078-10049097 | None:intergenic | 30.0% | |
| TTGAAAAATAAATAGGTGGC+TGG | - | chr1.1:10047874-10047893 | MS.gene015887:CDS | 30.0% | |
| ! | ACTGTTTTCATAACCTATCT+TGG | + | chr1.1:10047277-10047296 | None:intergenic | 30.0% |
| ! | ATTTTCTGTTTAATGCTGTG+GGG | - | chr1.1:10049085-10049104 | MS.gene015887:intron | 30.0% |
| ! | CTATTTTCTGTTTAATGCTG+TGG | - | chr1.1:10049083-10049102 | MS.gene015887:intron | 30.0% |
| !! | GGAAAATTTTGGTAGGATTA+GGG | - | chr1.1:10047458-10047477 | MS.gene015887:CDS | 30.0% |
| !!! | ACATATTCTTTTTTTGGGAG+AGG | + | chr1.1:10048489-10048508 | None:intergenic | 30.0% |
| !!! | CATATTCTTTTTTTGGGAGA+GGG | + | chr1.1:10048488-10048507 | None:intergenic | 30.0% |
| !!! | CTATAAGTTTTTTTATGGGG+AGG | - | chr1.1:10046803-10046822 | MS.gene015887:CDS | 30.0% |
| !!! | GTTGTTTTTATAAGCTCTAC+TGG | + | chr1.1:10047613-10047632 | None:intergenic | 30.0% |
| AATGAATCAAACAAACCTGC+TGG | + | chr1.1:10048719-10048738 | None:intergenic | 35.0% | |
| AGTTTGTGTTACCGTTTGTT+TGG | - | chr1.1:10047521-10047540 | MS.gene015887:CDS | 35.0% | |
| ATAGGCCTTACAGATTCTAT+AGG | + | chr1.1:10048774-10048793 | None:intergenic | 35.0% | |
| ATCATTGTCACCTGGTAATA+TGG | - | chr1.1:10049133-10049152 | MS.gene015887:intron | 35.0% | |
| ATGATGACAGTGAAGATGAA+TGG | - | chr1.1:10048178-10048197 | MS.gene015887:intron | 35.0% | |
| CAAGGGATACAAAAGTGAAA+AGG | - | chr1.1:10048005-10048024 | MS.gene015887:intron | 35.0% | |
| CCTTCACAACTACAAAACTA+AGG | + | chr1.1:10047770-10047789 | None:intergenic | 35.0% | |
| CGTTTGTTTGGTATAACTCT+TGG | - | chr1.1:10047533-10047552 | MS.gene015887:CDS | 35.0% | |
| CTCAAATAAGCCAATCCAAA+CGG | + | chr1.1:10047485-10047504 | None:intergenic | 35.0% | |
| GAAAAATAAATAGGTGGCTG+GGG | - | chr1.1:10047876-10047895 | MS.gene015887:CDS | 35.0% | |
| GAATGCTGAAAATGATGACA+TGG | - | chr1.1:10048272-10048291 | MS.gene015887:intron | 35.0% | |
| GGTTATATATAGGGCATGTT+TGG | - | chr1.1:10046873-10046892 | MS.gene015887:CDS | 35.0% | |
| GTAAATAAGCCAATCCAAAC+AGG | + | chr1.1:10047174-10047193 | None:intergenic | 35.0% | |
| GTGACAATGATTTACTGAAG+TGG | + | chr1.1:10049124-10049143 | None:intergenic | 35.0% | |
| TAACTCTTGGAAACAGCTTA+TGG | - | chr1.1:10047546-10047565 | MS.gene015887:CDS | 35.0% | |
| TACCAGGTTCTATGTTGATA+TGG | - | chr1.1:10047414-10047433 | MS.gene015887:CDS | 35.0% | |
| TAGGCCTTACAGATTCTATA+GGG | + | chr1.1:10048773-10048792 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+GGG | + | chr1.1:10047484-10047503 | None:intergenic | 35.0% | |
| TGAAAATGATGACATGGATG+AGG | - | chr1.1:10048278-10048297 | MS.gene015887:intron | 35.0% | |
| TGATGACAGTGAAGATGAAT+GGG | - | chr1.1:10048179-10048198 | MS.gene015887:intron | 35.0% | |
| TGTAAGGCCTATTGATACAT+TGG | - | chr1.1:10048782-10048801 | MS.gene015887:intron | 35.0% | |
| TTACCCCTATAGAATCTGTA+AGG | - | chr1.1:10048766-10048785 | MS.gene015887:intron | 35.0% | |
| TTCAGTAAATCATTGTCACC+TGG | - | chr1.1:10049125-10049144 | MS.gene015887:intron | 35.0% | |
| TTCTATGTTGATATGGTGAG+AGG | - | chr1.1:10047421-10047440 | MS.gene015887:CDS | 35.0% | |
| ! | ATCAGTTATGTTGATGAGCA+AGG | - | chr1.1:10048838-10048857 | MS.gene015887:intron | 35.0% |
| ! | GAGTTATCAACCACTCTTTT+AGG | + | chr1.1:10048150-10048169 | None:intergenic | 35.0% |
| ! | GTCTCTTTTGACCTACAAAT+TGG | + | chr1.1:10048545-10048564 | None:intergenic | 35.0% |
| ! | TACCAAAATTTTCCCTCTAC+TGG | + | chr1.1:10047452-10047471 | None:intergenic | 35.0% |
| ! | TCAGTTATGTTGATGAGCAA+GGG | - | chr1.1:10048839-10048858 | MS.gene015887:intron | 35.0% |
| ! | TTATCAACCACTCTTTTAGG+AGG | + | chr1.1:10048147-10048166 | None:intergenic | 35.0% |
| !! | AGTAGAGGGAAAATTTTGGT+AGG | - | chr1.1:10047451-10047470 | MS.gene015887:CDS | 35.0% |
| !! | GCGTTCTAGTCTTTGAAATT+AGG | - | chr1.1:10046680-10046699 | MS.gene015887:intron | 35.0% |
| !! | GGGAAAATTTTGGTAGGATT+AGG | - | chr1.1:10047457-10047476 | MS.gene015887:CDS | 35.0% |
| !! | GGGAGGGTAAAATTTGTTAT+GGG | - | chr1.1:10046820-10046839 | MS.gene015887:CDS | 35.0% |
| !! | GGGTAAAATTTGTTATGGGT+AGG | - | chr1.1:10046824-10046843 | MS.gene015887:CDS | 35.0% |
| !!! | CCTTAGTTTTGTAGTTGTGA+AGG | - | chr1.1:10047767-10047786 | MS.gene015887:CDS | 35.0% |
| !!! | TAGTTTTGTAGTTGTGAAGG+AGG | - | chr1.1:10047770-10047789 | MS.gene015887:CDS | 35.0% |
| AAAGGACTCCTCACTTATCT+TGG | - | chr1.1:10048441-10048460 | MS.gene015887:intron | 40.0% | |
| AAGGACTCCTCACTTATCTT+GGG | - | chr1.1:10048442-10048461 | MS.gene015887:intron | 40.0% | |
| AATCACTGCAAGGTGCATTA+TGG | - | chr1.1:10048643-10048662 | MS.gene015887:intron | 40.0% | |
| AGGCCTTACAGATTCTATAG+GGG | + | chr1.1:10048772-10048791 | None:intergenic | 40.0% | |
| AGTCCAGAACTCATATGATG+CGG | - | chr1.1:10048046-10048065 | MS.gene015887:intron | 40.0% | |
| ATTAAGCTGTTTATCCCAGC+AGG | - | chr1.1:10047743-10047762 | MS.gene015887:CDS | 40.0% | |
| CAATGTTATTCGCTGCTGAT+GGG | + | chr1.1:10049014-10049033 | None:intergenic | 40.0% | |
| CACCATATCAACATAGAACC+TGG | + | chr1.1:10047419-10047438 | None:intergenic | 40.0% | |
| CTCGTAATCACTAAGATGTC+TGG | - | chr1.1:10048922-10048941 | MS.gene015887:intron | 40.0% | |
| GAACTTTCGGAATCAGCTTA+TGG | + | chr1.1:10047077-10047096 | None:intergenic | 40.0% | |
| GAATAACATTGCCGTTACTG+CGG | - | chr1.1:10049023-10049042 | MS.gene015887:intron | 40.0% | |
| GGATGAAGAGTAATGTGATC+CGG | - | chr1.1:10049287-10049306 | MS.gene015887:intron | 40.0% | |
| GTCCATGTTCATATCTGTCA+AGG | + | chr1.1:10048250-10048269 | None:intergenic | 40.0% | |
| GTCCTTGACAGATATGAACA+TGG | - | chr1.1:10048245-10048264 | MS.gene015887:intron | 40.0% | |
| GTTCATATGCACAAGCATCA+TGG | - | chr1.1:10048381-10048400 | MS.gene015887:intron | 40.0% | |
| TGACATTGTTTGGCAAGTTC+CGG | + | chr1.1:10049309-10049328 | None:intergenic | 40.0% | |
| TGTAGTTGTGAAGGAGGATT+TGG | - | chr1.1:10047776-10047795 | MS.gene015887:CDS | 40.0% | |
| TTGAAGCAGATGAACAGATC+AGG | - | chr1.1:10049238-10049257 | MS.gene015887:intron | 40.0% | |
| ! | AGATAAGTGAGGAGTCCTTT+TGG | + | chr1.1:10048441-10048460 | None:intergenic | 40.0% |
| ! | ATGGATGAGGATGATGATGA+TGG | - | chr1.1:10048291-10048310 | MS.gene015887:intron | 40.0% |
| ! | GGTTGATTCTGATGATGATC+TGG | - | chr1.1:10048206-10048225 | MS.gene015887:intron | 40.0% |
| ! | TGCCAGTAGAGGGAAAATTT+TGG | - | chr1.1:10047447-10047466 | MS.gene015887:CDS | 40.0% |
| ! | TTATGGTGATGATGACGATG+AGG | - | chr1.1:10048660-10048679 | MS.gene015887:intron | 40.0% |
| ! | TTTTGTATCCCTTGCCACAT+AGG | + | chr1.1:10047999-10048018 | None:intergenic | 40.0% |
| !! | AGTTCTGGACTTAAGATGCT+CGG | + | chr1.1:10048037-10048056 | None:intergenic | 40.0% |
| !! | GGGGAGGGTAAAATTTGTTA+TGG | - | chr1.1:10046819-10046838 | MS.gene015887:CDS | 40.0% |
| !! | TCACAATTTGCTGCCTTGAT+TGG | + | chr1.1:10049207-10049226 | None:intergenic | 40.0% |
| !!! | ATTTTTCAGGTACAGGAGCA+TGG | - | chr1.1:10049168-10049187 | MS.gene015887:intron | 40.0% |
| !!! | TTTTTCAGGTACAGGAGCAT+GGG | - | chr1.1:10049169-10049188 | MS.gene015887:intron | 40.0% |
| AACAATGCTTCTGTCACTCC+AGG | + | chr1.1:10047904-10047923 | None:intergenic | 45.0% | |
| AGCATATGCGTAGCAAGATG+GGG | - | chr1.1:10049266-10049285 | MS.gene015887:intron | 45.0% | |
| AGCCCTATGCTCTATAGTTG+TGG | - | chr1.1:10047973-10047992 | MS.gene015887:intron | 45.0% | |
| AGGCCACAACTATAGAGCAT+AGG | + | chr1.1:10047979-10047998 | None:intergenic | 45.0% | |
| CCAATCCAAACAGGCTCTAT+GGG | + | chr1.1:10047165-10047184 | None:intergenic | 45.0% | |
| CTCTATAGTTGTGGCCTATG+TGG | - | chr1.1:10047982-10048001 | MS.gene015887:intron | 45.0% | |
| GAGCATATGCGTAGCAAGAT+GGG | - | chr1.1:10049265-10049284 | MS.gene015887:intron | 45.0% | |
| GCAATGTTATTCGCTGCTGA+TGG | + | chr1.1:10049015-10049034 | None:intergenic | 45.0% | |
| GGCCACAACTATAGAGCATA+GGG | + | chr1.1:10047978-10047997 | None:intergenic | 45.0% | |
| GGTAGCGAAAAATCACTGCA+AGG | - | chr1.1:10048633-10048652 | MS.gene015887:intron | 45.0% | |
| GTCCAGAACTCATATGATGC+GGG | - | chr1.1:10048047-10048066 | MS.gene015887:intron | 45.0% | |
| TAAGCCTCCTCCTAAAAGAG+TGG | - | chr1.1:10048137-10048156 | MS.gene015887:intron | 45.0% | |
| TACAAAACTAAGGGCCTGCT+GGG | + | chr1.1:10047760-10047779 | None:intergenic | 45.0% | |
| TCGCTACAATCTCAAACGCA+AGG | - | chr1.1:10046556-10046575 | MS.gene015887:CDS | 45.0% | |
| TGACAGTGAAGATGAATGGG+TGG | - | chr1.1:10048182-10048201 | MS.gene015887:intron | 45.0% | |
| TGTGTCTGTACTGCAACGAT+CGG | - | chr1.1:10048569-10048588 | MS.gene015887:intron | 45.0% | |
| !! | TCAACCACTCTTTTAGGAGG+AGG | + | chr1.1:10048144-10048163 | None:intergenic | 45.0% |
| !! | TGAGGATGATGATGATGGTG+TGG | - | chr1.1:10048296-10048315 | MS.gene015887:intron | 45.0% |
| !!! | GGGAAGCAGCTAGTTTTATC+TGG | - | chr1.1:10048859-10048878 | MS.gene015887:intron | 45.0% |
| !! | AAATAAATTATCAAAAAAAT+TGG | + | chr1.1:10046610-10046629 | None:intergenic | 5.0% |
| AAGCTGCACTTGCTCAAGAG+AGG | - | chr1.1:10047935-10047954 | MS.gene015887:intron | 50.0% | |
| AAGGAGATAGCCAGTCAGAC+GGG | - | chr1.1:10048076-10048095 | MS.gene015887:intron | 50.0% | |
| ACAGCTTCCAAGCTGCTGAA+AGG | + | chr1.1:10048601-10048620 | None:intergenic | 50.0% | |
| AGCCCGCATCATATGAGTTC+TGG | + | chr1.1:10048052-10048071 | None:intergenic | 50.0% | |
| AGCTGCACTTGCTCAAGAGA+GGG | - | chr1.1:10047936-10047955 | MS.gene015887:intron | 50.0% | |
| AGTTGTGGCCTATGTGGCAA+GGG | - | chr1.1:10047988-10048007 | MS.gene015887:intron | 50.0% | |
| ATACAGGGCCATAGTGTGGT+GGG | - | chr1.1:10047387-10047406 | MS.gene015887:CDS | 50.0% | |
| ATCCATACAGGGCCATAGTG+TGG | - | chr1.1:10047383-10047402 | MS.gene015887:CDS | 50.0% | |
| CAGTGAAGATGAATGGGTGG+AGG | - | chr1.1:10048185-10048204 | MS.gene015887:intron | 50.0% | |
| CATATGATGCGGGCTTCTGA+AGG | - | chr1.1:10048057-10048076 | MS.gene015887:intron | 50.0% | |
| CATTGCCGTTACTGCGGAAT+TGG | - | chr1.1:10049029-10049048 | MS.gene015887:intron | 50.0% | |
| CCCATAGAGCCTGTTTGGAT+TGG | - | chr1.1:10047162-10047181 | MS.gene015887:CDS | 50.0% | |
| CCTCACTTATCTTGGGCTGA+AGG | - | chr1.1:10048449-10048468 | MS.gene015887:intron | 50.0% | |
| CCTTCAGCCCAAGATAAGTG+AGG | + | chr1.1:10048452-10048471 | None:intergenic | 50.0% | |
| CGATGAGGAGGAAGTTGAGT+TGG | - | chr1.1:10048675-10048694 | MS.gene015887:intron | 50.0% | |
| CTACAAAACTAAGGGCCTGC+TGG | + | chr1.1:10047761-10047780 | None:intergenic | 50.0% | |
| CTCTATGGGCCCGTTTACAT+TGG | + | chr1.1:10047151-10047170 | None:intergenic | 50.0% | |
| GAAGGAGATAGCCAGTCAGA+CGG | - | chr1.1:10048075-10048094 | MS.gene015887:intron | 50.0% | |
| GCAGATGAACAGATCAGGTG+TGG | - | chr1.1:10049243-10049262 | MS.gene015887:intron | 50.0% | |
| GCCAATCCAAACAGGCTCTA+TGG | + | chr1.1:10047166-10047185 | None:intergenic | 50.0% | |
| GGAAGCTGTCAGGAAACACA+TGG | - | chr1.1:10048612-10048631 | MS.gene015887:intron | 50.0% | |
| GGAGCATATGCGTAGCAAGA+TGG | - | chr1.1:10049264-10049283 | MS.gene015887:intron | 50.0% | |
| GGCTTATTCACAACGCGTTG+TGG | + | chr1.1:10048123-10048142 | None:intergenic | 50.0% | |
| GTGTCATCCTTTCAGCAGCT+TGG | - | chr1.1:10048591-10048610 | MS.gene015887:intron | 50.0% | |
| TAGTTGTGGCCTATGTGGCA+AGG | - | chr1.1:10047987-10048006 | MS.gene015887:intron | 50.0% | |
| TGCAGCCAATTCCGCAGTAA+CGG | + | chr1.1:10049037-10049056 | None:intergenic | 50.0% | |
| TTACTGCGGAATTGGCTGCA+AGG | - | chr1.1:10049037-10049056 | MS.gene015887:intron | 50.0% | |
| TTATAGCCTTCCCGTCTGAC+TGG | + | chr1.1:10048089-10048108 | None:intergenic | 50.0% | |
| TTCACAACGCGTTGTGGAAG+TGG | + | chr1.1:10048117-10048136 | None:intergenic | 50.0% | |
| TTGCTGCCTTGATTGGACAG+TGG | + | chr1.1:10049200-10049219 | None:intergenic | 50.0% | |
| ! | TGGTGATGATGACGATGAGG+AGG | - | chr1.1:10048663-10048682 | MS.gene015887:intron | 50.0% |
| !! | TGAGAGGTGTTGCCAGTAGA+GGG | - | chr1.1:10047437-10047456 | MS.gene015887:CDS | 50.0% |
| AAATAGGTGGCTGGGGTTCC+TGG | - | chr1.1:10047883-10047902 | MS.gene015887:CDS | 55.0% | |
| AGATAGCCAGTCAGACGGGA+AGG | - | chr1.1:10048080-10048099 | MS.gene015887:intron | 55.0% | |
| CACCACACTATGGCCCTGTA+TGG | + | chr1.1:10047388-10047407 | None:intergenic | 55.0% | |
| CATACAGGGCCATAGTGTGG+TGG | - | chr1.1:10047386-10047405 | MS.gene015887:CDS | 55.0% | |
| GGATTAGGGCCCGTTTGGAT+TGG | - | chr1.1:10047472-10047491 | MS.gene015887:CDS | 55.0% | |
| GGTAACCACCCACCACACTA+TGG | + | chr1.1:10047398-10047417 | None:intergenic | 55.0% | |
| GTCTGGCCACTGTCCAATCA+AGG | - | chr1.1:10049191-10049210 | MS.gene015887:intron | 55.0% | |
| TCAGCAGCTTGGAAGCTGTC+AGG | - | chr1.1:10048602-10048621 | MS.gene015887:intron | 55.0% | |
| TGGTAGGATTAGGGCCCGTT+TGG | - | chr1.1:10047467-10047486 | MS.gene015887:CDS | 55.0% | |
| ! | TTATTCGCTGCTGATGGGCG+TGG | + | chr1.1:10049009-10049028 | None:intergenic | 55.0% |
| !! | GTGAGAGGTGTTGCCAGTAG+AGG | - | chr1.1:10047436-10047455 | MS.gene015887:CDS | 55.0% |
| !! | TAGTGTGGTGGGTGGTTACC+AGG | - | chr1.1:10047398-10047417 | MS.gene015887:CDS | 55.0% |
| ACGGGCCCATAGAGCCTGTT+TGG | - | chr1.1:10047157-10047176 | MS.gene015887:CDS | 60.0% | |
| ! | CAGGTACAGGAGCATGGGTC+TGG | - | chr1.1:10049174-10049193 | MS.gene015887:intron | 60.0% |
| ! | CAGGGCCATAGTGTGGTGGG+TGG | - | chr1.1:10047390-10047409 | MS.gene015887:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 10046473 | 10049336 | 10046473 | ID=MS.gene015887 |
| chr1.1 | mRNA | 10046473 | 10049336 | 10046473 | ID=MS.gene015887.t1;Parent=MS.gene015887 |
| chr1.1 | exon | 10049323 | 10049336 | 10049323 | ID=MS.gene015887.t1.exon1;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10049323 | 10049336 | 10049323 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| chr1.1 | exon | 10048341 | 10048389 | 10048341 | ID=MS.gene015887.t1.exon2;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10048341 | 10048389 | 10048341 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| chr1.1 | exon | 10047339 | 10047920 | 10047339 | ID=MS.gene015887.t1.exon3;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10047339 | 10047920 | 10047339 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| chr1.1 | exon | 10047087 | 10047256 | 10047087 | ID=MS.gene015887.t1.exon4;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10047087 | 10047256 | 10047087 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| chr1.1 | exon | 10046751 | 10046966 | 10046751 | ID=MS.gene015887.t1.exon5;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10046751 | 10046966 | 10046751 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| chr1.1 | exon | 10046473 | 10046632 | 10046473 | ID=MS.gene015887.t1.exon6;Parent=MS.gene015887.t1 |
| chr1.1 | CDS | 10046473 | 10046632 | 10046473 | ID=cds.MS.gene015887.t1;Parent=MS.gene015887.t1 |
| Gene Sequence |
| Protein sequence |
