Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008389.t1 | XP_013460525.1 | 95.1 | 425 | 21 | 0 | 1 | 425 | 1 | 425 | 6.50E-231 | 809.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008389.t1 | Q689D6 | 38.7 | 357 | 209 | 5 | 41 | 391 | 35 | 387 | 1.2e-60 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008389.t1 | A0A072UXM1 | 95.1 | 425 | 21 | 0 | 1 | 425 | 1 | 425 | 4.7e-231 | 809.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene068083 | MS.gene008389 | PPI |
| MS.gene055711 | MS.gene008389 | PPI |
| MS.gene013931 | MS.gene008389 | PPI |
| MS.gene008389 | MS.gene41893 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008389.t1 | MTR_3g063230 | 95.059 | 425 | 21 | 0 | 1 | 425 | 1 | 425 | 0.0 | 848 |
| MS.gene008389.t1 | MTR_3g063230 | 89.882 | 425 | 19 | 1 | 1 | 425 | 1 | 401 | 0.0 | 788 |
| MS.gene008389.t1 | MTR_7g088530 | 39.067 | 343 | 197 | 3 | 49 | 391 | 43 | 373 | 1.71e-74 | 239 |
| MS.gene008389.t1 | MTR_6g033595 | 36.219 | 439 | 240 | 12 | 19 | 423 | 8 | 440 | 1.07e-67 | 223 |
| MS.gene008389.t1 | MTR_2g067960 | 36.957 | 322 | 195 | 6 | 74 | 391 | 35 | 352 | 5.77e-52 | 180 |
| MS.gene008389.t1 | MTR_1g032040 | 30.861 | 337 | 218 | 6 | 54 | 386 | 37 | 362 | 9.39e-44 | 157 |
| MS.gene008389.t1 | MTR_1g032380 | 30.861 | 337 | 218 | 6 | 54 | 386 | 37 | 362 | 9.39e-44 | 157 |
| MS.gene008389.t1 | MTR_1g072550 | 28.643 | 398 | 263 | 9 | 17 | 410 | 5 | 385 | 2.47e-39 | 145 |
| MS.gene008389.t1 | MTR_6g043850 | 26.702 | 382 | 228 | 9 | 54 | 421 | 32 | 375 | 2.19e-33 | 132 |
| MS.gene008389.t1 | MTR_7g107280 | 29.825 | 342 | 219 | 9 | 46 | 381 | 30 | 356 | 2.80e-33 | 129 |
| MS.gene008389.t1 | MTR_4g053720 | 28.453 | 362 | 214 | 10 | 48 | 387 | 17 | 355 | 2.94e-31 | 123 |
| MS.gene008389.t1 | MTR_3g105530 | 27.151 | 372 | 234 | 7 | 38 | 391 | 20 | 372 | 4.87e-30 | 120 |
| MS.gene008389.t1 | MTR_7g117270 | 25.180 | 417 | 279 | 11 | 15 | 419 | 55 | 450 | 7.04e-30 | 121 |
| MS.gene008389.t1 | MTR_1g019170 | 23.529 | 391 | 239 | 8 | 30 | 394 | 3 | 359 | 4.81e-26 | 109 |
| MS.gene008389.t1 | MTR_3g029990 | 24.103 | 390 | 236 | 9 | 31 | 394 | 4 | 359 | 1.28e-25 | 109 |
| MS.gene008389.t1 | MTR_3g029990 | 24.103 | 390 | 236 | 9 | 31 | 394 | 4 | 359 | 1.50e-25 | 109 |
| MS.gene008389.t1 | MTR_7g018630 | 25.938 | 320 | 223 | 6 | 68 | 386 | 69 | 375 | 4.90e-25 | 106 |
| MS.gene008389.t1 | MTR_1g098960 | 23.919 | 393 | 237 | 10 | 30 | 394 | 3 | 361 | 1.72e-24 | 105 |
| MS.gene008389.t1 | MTR_8g089370 | 26.129 | 310 | 212 | 6 | 106 | 411 | 92 | 388 | 7.41e-23 | 99.8 |
| MS.gene008389.t1 | MTR_3g030020 | 23.718 | 312 | 191 | 6 | 103 | 394 | 32 | 316 | 1.78e-20 | 92.8 |
| MS.gene008389.t1 | MTR_3g083350 | 24.870 | 386 | 236 | 13 | 37 | 385 | 21 | 389 | 1.96e-19 | 90.9 |
| MS.gene008389.t1 | MTR_0153s0070 | 23.487 | 413 | 228 | 9 | 43 | 421 | 2 | 360 | 6.46e-19 | 88.2 |
| MS.gene008389.t1 | MTR_0153s0070 | 24.540 | 326 | 209 | 7 | 40 | 347 | 29 | 335 | 2.39e-17 | 83.2 |
| MS.gene008389.t1 | MTR_3g448960 | 21.374 | 393 | 222 | 12 | 30 | 394 | 3 | 336 | 3.13e-14 | 74.7 |
| MS.gene008389.t1 | MTR_3g074730 | 24.927 | 341 | 230 | 13 | 42 | 374 | 49 | 371 | 5.67e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008389.t1 | AT1G06440 | 70.588 | 357 | 101 | 3 | 39 | 392 | 21 | 376 | 0.0 | 518 |
| MS.gene008389.t1 | AT4G33495 | 38.655 | 357 | 209 | 5 | 41 | 391 | 35 | 387 | 7.74e-75 | 239 |
| MS.gene008389.t1 | AT5G45790 | 34.987 | 383 | 233 | 4 | 9 | 391 | 29 | 395 | 6.05e-74 | 238 |
| MS.gene008389.t1 | AT5G45790 | 38.742 | 302 | 173 | 3 | 90 | 391 | 21 | 310 | 1.29e-68 | 221 |
| MS.gene008389.t1 | AT4G24320 | 29.462 | 353 | 232 | 9 | 48 | 392 | 18 | 361 | 2.55e-36 | 137 |
| MS.gene008389.t1 | AT3G58520 | 29.640 | 361 | 222 | 9 | 26 | 375 | 17 | 356 | 1.24e-34 | 133 |
| MS.gene008389.t1 | AT2G31290 | 25.964 | 389 | 242 | 8 | 51 | 418 | 27 | 390 | 1.83e-34 | 133 |
| MS.gene008389.t1 | AT2G31290 | 25.964 | 389 | 242 | 8 | 51 | 418 | 27 | 390 | 1.83e-34 | 133 |
| MS.gene008389.t1 | AT3G58520 | 30.030 | 333 | 199 | 7 | 53 | 375 | 36 | 344 | 8.96e-33 | 128 |
| MS.gene008389.t1 | AT5G21970 | 27.020 | 396 | 251 | 11 | 37 | 408 | 38 | 419 | 1.37e-31 | 125 |
| MS.gene008389.t1 | AT5G21970 | 27.020 | 396 | 251 | 11 | 37 | 408 | 38 | 419 | 1.37e-31 | 125 |
| MS.gene008389.t1 | AT2G39120 | 27.248 | 367 | 251 | 6 | 23 | 386 | 2 | 355 | 2.24e-31 | 124 |
| MS.gene008389.t1 | AT5G48040 | 28.000 | 350 | 208 | 9 | 53 | 386 | 40 | 361 | 4.44e-31 | 124 |
| MS.gene008389.t1 | AT3G63090 | 29.524 | 315 | 198 | 7 | 81 | 386 | 66 | 365 | 4.48e-31 | 123 |
| MS.gene008389.t1 | AT1G71850 | 25.337 | 371 | 257 | 8 | 43 | 406 | 22 | 379 | 1.70e-30 | 122 |
| MS.gene008389.t1 | AT4G01037 | 26.997 | 363 | 249 | 9 | 52 | 410 | 78 | 428 | 7.77e-30 | 121 |
| MS.gene008389.t1 | AT1G79120 | 28.231 | 294 | 186 | 5 | 107 | 387 | 115 | 396 | 1.34e-28 | 116 |
| MS.gene008389.t1 | AT1G79120 | 28.231 | 294 | 186 | 5 | 107 | 387 | 115 | 396 | 1.34e-28 | 116 |
| MS.gene008389.t1 | AT5G62990 | 24.207 | 347 | 236 | 8 | 53 | 386 | 60 | 392 | 3.24e-21 | 96.3 |
| MS.gene008389.t1 | AT4G08940 | 25.588 | 340 | 226 | 14 | 41 | 374 | 56 | 374 | 1.66e-13 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAGAGTTTGCCTTATA+TGG | 0.183804 | 3.1:+53205543 | MS.gene008389:CDS |
| AACAGAGACTGATCGGTTTC+TGG | 0.240773 | 3.1:-53204975 | None:intergenic |
| AGATAAGCCAATTTAGAAAA+TGG | 0.242614 | 3.1:+53205695 | MS.gene008389:CDS |
| CTTGCATCATAGACAGGATT+TGG | 0.284743 | 3.1:-53205844 | None:intergenic |
| TAATATAAGGGATCTATTCT+TGG | 0.287223 | 3.1:+53205732 | MS.gene008389:CDS |
| TTCTTGCTCAACCGCATTCC+TGG | 0.288574 | 3.1:-53205499 | None:intergenic |
| CCCCACTTTCGAGAAACTTA+TGG | 0.293848 | 3.1:+53204895 | MS.gene008389:CDS |
| ATCTGTCGACAAAGGGTAAA+AGG | 0.299149 | 3.1:+53205773 | MS.gene008389:CDS |
| ATCTCATACGGCCCCATATA+AGG | 0.303643 | 3.1:-53205556 | None:intergenic |
| AGCTGTTAATTCCAAGTTGC+AGG | 0.346075 | 3.1:+53205912 | MS.gene008389:CDS |
| CTTTGCCTCTTGTTGTTGAA+AGG | 0.364008 | 3.1:+53205176 | MS.gene008389:CDS |
| CATTAATAGCCTCAGCTTCA+AGG | 0.368611 | 3.1:-53205150 | None:intergenic |
| GAGCTCGTGAATTTACATAT+TGG | 0.375257 | 3.1:-53204868 | None:intergenic |
| AGGCAGTGGCACCGCGGTTA+AGG | 0.379733 | 3.1:-53205030 | None:intergenic |
| AAAGAGGTCGCTCACTCAAA+TGG | 0.385463 | 3.1:+53204754 | MS.gene008389:CDS |
| GTGGAGCTTCTGAGAGAGAT+TGG | 0.399486 | 3.1:-53205008 | None:intergenic |
| ACAGAGACTGATCGGTTTCT+GGG | 0.402437 | 3.1:-53204974 | None:intergenic |
| AGCCAATTTAGAAAATGGTT+TGG | 0.404374 | 3.1:+53205700 | MS.gene008389:CDS |
| TTCAAGGTTTGGAGGGAGCT+TGG | 0.404473 | 3.1:+53205253 | MS.gene008389:CDS |
| ATCCATAAGTTTCTCGAAAG+TGG | 0.410175 | 3.1:-53204897 | None:intergenic |
| TGAGAAGAAGAAGACATCTA+AGG | 0.415354 | 3.1:+53205585 | MS.gene008389:CDS |
| TGGCAGAGTTTGCCTTATAT+GGG | 0.419505 | 3.1:+53205544 | MS.gene008389:CDS |
| GAGCTGCTGTTGAGGATTGG+AGG | 0.431533 | 3.1:+53205401 | MS.gene008389:CDS |
| TTAGAGCTGCTGTTGAGGAT+TGG | 0.433013 | 3.1:+53205398 | MS.gene008389:CDS |
| TTCTGGGGTTAGCAAGGATA+AGG | 0.433285 | 3.1:-53204958 | None:intergenic |
| TTGTTGTTGAAAGGCTTGTT+CGG | 0.434863 | 3.1:+53205185 | MS.gene008389:CDS |
| GCAGCTCTAAAACCATTGTT+AGG | 0.443938 | 3.1:-53205385 | None:intergenic |
| CCTGCAAAACGGCTGCAACT+TGG | 0.450688 | 3.1:-53205098 | None:intergenic |
| TCCATAAGTTTCTCGAAAGT+GGG | 0.452415 | 3.1:-53204896 | None:intergenic |
| AGCTCTAAGAGGAACCGTTC+TGG | 0.460122 | 3.1:-53205227 | None:intergenic |
| CTTCTCCTTGCATCATAGAC+AGG | 0.474197 | 3.1:-53205850 | None:intergenic |
| CATTTCCATGTTATTAACAC+TGG | 0.476158 | 3.1:-53205449 | None:intergenic |
| GACATCTAAGGCTGGAATGA+TGG | 0.476618 | 3.1:+53205597 | MS.gene008389:CDS |
| ACTGAGTCCTCAAAATCATC+AGG | 0.479936 | 3.1:-53205280 | None:intergenic |
| GAGTTTAACAGTGGAAAAGA+TGG | 0.482154 | 3.1:+53205660 | MS.gene008389:CDS |
| AAGAGGTCGCTCACTCAAAT+GGG | 0.488339 | 3.1:+53204755 | MS.gene008389:CDS |
| GGATCTATTCTTGGATCACC+CGG | 0.492833 | 3.1:+53205741 | MS.gene008389:CDS |
| AGCTGCTGTTGAGGATTGGA+GGG | 0.511698 | 3.1:+53205402 | MS.gene008389:CDS |
| ACCTTGAAAACAGCTCTAAG+AGG | 0.512545 | 3.1:-53205238 | None:intergenic |
| TTTAAACAACGGTATCCTCC+AGG | 0.515381 | 3.1:+53205481 | MS.gene008389:CDS |
| GTCGACAGATAGAAGATCCC+CGG | 0.523665 | 3.1:-53205760 | None:intergenic |
| ATCTTCTATCTGTCGACAAA+GGG | 0.524672 | 3.1:+53205766 | MS.gene008389:CDS |
| GGTTGTCAAGTGTTGTAAAG+AGG | 0.527201 | 3.1:+53205423 | MS.gene008389:CDS |
| AAGAAGAAGACATCTAAGGC+TGG | 0.541329 | 3.1:+53205589 | MS.gene008389:CDS |
| CAGTGGCACCGCGGTTAAGG+TGG | 0.542087 | 3.1:-53205027 | None:intergenic |
| ATCGGTTTCTGGGGTTAGCA+AGG | 0.543715 | 3.1:-53204964 | None:intergenic |
| CTGTCTATGATGCAAGGAGA+AGG | 0.546551 | 3.1:+53205851 | MS.gene008389:CDS |
| GTGAGGAAACTTGCGGAGGA+AGG | 0.548834 | 3.1:-53205050 | None:intergenic |
| GAATACTCATCTGTTGAAGC+TGG | 0.549824 | 3.1:+53205351 | MS.gene008389:CDS |
| GTTGGTGATGTTCCTAACAA+TGG | 0.550594 | 3.1:+53205373 | MS.gene008389:CDS |
| TGCAACTTGGAATTAACAGC+TGG | 0.550838 | 3.1:-53205910 | None:intergenic |
| GTCTATGTCTGCTTCCAGAA+CGG | 0.551888 | 3.1:+53205213 | MS.gene008389:CDS |
| TCAGAGCCAATGTGAAGGAA+TGG | 0.559863 | 3.1:+53205524 | MS.gene008389:CDS |
| AAACTTGCGGAGGAAGGCAG+TGG | 0.562183 | 3.1:-53205044 | None:intergenic |
| GGAATTCAACAGAGACTGAT+CGG | 0.563326 | 3.1:-53204982 | None:intergenic |
| TTCTCACTGACCATCTCATA+CGG | 0.567104 | 3.1:-53205568 | None:intergenic |
| ACTCATAAATTCATGAACAA+TGG | 0.568519 | 3.1:-53205641 | None:intergenic |
| TGAATTTATGAGTTTAACAG+TGG | 0.570981 | 3.1:+53205651 | MS.gene008389:CDS |
| GCATCAGTTAACCTGCAAAA+CGG | 0.571025 | 3.1:-53205109 | None:intergenic |
| CAAAACGGCTGCAACTTGGA+AGG | 0.574780 | 3.1:-53205094 | None:intergenic |
| TGTGGCAATGAGGTTGAACA+AGG | 0.574826 | 3.1:+53205943 | MS.gene008389:CDS |
| GAACGGCAATGACTTTGAGA+AGG | 0.579886 | 3.1:-53204931 | None:intergenic |
| GATCTTCTATCTGTCGACAA+AGG | 0.581795 | 3.1:+53205765 | MS.gene008389:CDS |
| ACAAGCCTTTCAACAACAAG+AGG | 0.582092 | 3.1:-53205181 | None:intergenic |
| TTTAACAGTGGAAAAGATGG+TGG | 0.585164 | 3.1:+53205663 | MS.gene008389:CDS |
| CAAATCCTGTCTATGATGCA+AGG | 0.586740 | 3.1:+53205845 | MS.gene008389:CDS |
| TTATATGGGGCCGTATGAGA+TGG | 0.596699 | 3.1:+53205558 | MS.gene008389:CDS |
| TGTTTCGCACCTTGAAGCTG+AGG | 0.597826 | 3.1:+53205141 | MS.gene008389:CDS |
| ACTCATCTGTTGAAGCTGGT+TGG | 0.601190 | 3.1:+53205355 | MS.gene008389:CDS |
| AAGTTGCAGGACAAAAGTTG+TGG | 0.601248 | 3.1:+53205925 | MS.gene008389:CDS |
| AGCAAGGATAAGGTCTTGAA+CGG | 0.602317 | 3.1:-53204948 | None:intergenic |
| TAAGGCTGGAATGATGGCGA+TGG | 0.602790 | 3.1:+53205603 | MS.gene008389:CDS |
| TCGACAGATAGAAGATCCCC+GGG | 0.609533 | 3.1:-53205759 | None:intergenic |
| GGCAGAGTTTGCCTTATATG+GGG | 0.613431 | 3.1:+53205545 | MS.gene008389:CDS |
| CAGAGACTGATCGGTTTCTG+GGG | 0.613837 | 3.1:-53204973 | None:intergenic |
| GGATTCCAGTGTTAATAACA+TGG | 0.614807 | 3.1:+53205444 | MS.gene008389:CDS |
| TGGCAATGAGGTTGAACAAG+GGG | 0.619354 | 3.1:+53205945 | MS.gene008389:CDS |
| ACTCTGCCATTCCTTCACAT+TGG | 0.624053 | 3.1:-53205530 | None:intergenic |
| GAACTTCAGAGCCAATGTGA+AGG | 0.627730 | 3.1:+53205519 | MS.gene008389:CDS |
| CCATAAGTTTCTCGAAAGTG+GGG | 0.627913 | 3.1:-53204895 | None:intergenic |
| GATCTATTCTTGGATCACCC+GGG | 0.631074 | 3.1:+53205742 | MS.gene008389:CDS |
| ATCTATTCTTGGATCACCCG+GGG | 0.642117 | 3.1:+53205743 | MS.gene008389:CDS |
| AACGGTATCCTCCAGGAATG+CGG | 0.645784 | 3.1:+53205488 | MS.gene008389:CDS |
| TTGAGGGAAGCTTATGAACG+AGG | 0.648422 | 3.1:+53205808 | MS.gene008389:CDS |
| CAAAGATGTGAGGAAACTTG+CGG | 0.653222 | 3.1:-53205057 | None:intergenic |
| CTTGTTGCTTTAGAACGCCG+TGG | 0.656804 | 3.1:+53205883 | MS.gene008389:CDS |
| GTGGCAATGAGGTTGAACAA+GGG | 0.673362 | 3.1:+53205944 | MS.gene008389:CDS |
| TTGCTCAACCGCATTCCTGG+AGG | 0.673617 | 3.1:-53205496 | None:intergenic |
| TAGTAAATATCAAAGATGTG+AGG | 0.685693 | 3.1:-53205067 | None:intergenic |
| GGACAAAAGTTGTGGCAATG+AGG | 0.687120 | 3.1:+53205933 | MS.gene008389:CDS |
| GCTTCTGAGAGAGATTGGAG+AGG | 0.688059 | 3.1:-53205003 | None:intergenic |
| GTGTTAATAACATGGAAATG+CGG | 0.693054 | 3.1:+53205452 | MS.gene008389:CDS |
| AATTAACAGCTGGTAAACCA+CGG | 0.700188 | 3.1:-53205900 | None:intergenic |
| GATGGCGATGGAGAAGCGAG+CGG | 0.722066 | 3.1:+53205615 | MS.gene008389:CDS |
| CAGAAGCTCCACCTTAACCG+CGG | 0.723603 | 3.1:+53205019 | MS.gene008389:CDS |
| AGATGTGAGGAAACTTGCGG+AGG | 0.742899 | 3.1:-53205054 | None:intergenic |
| GGAGGAAGGCAGTGGCACCG+CGG | 0.765914 | 3.1:-53205036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGTATTGATTTTAATATAA+GGG | + | chr3.1:53205720-53205739 | MS.gene008389:CDS | 15.0% |
| !!! | TTGGTATTGATTTTAATATA+AGG | + | chr3.1:53205719-53205738 | MS.gene008389:CDS | 15.0% |
| ! | ACTCATAAATTCATGAACAA+TGG | - | chr3.1:53205644-53205663 | None:intergenic | 25.0% |
| ! | AGATAAGCCAATTTAGAAAA+TGG | + | chr3.1:53205695-53205714 | MS.gene008389:CDS | 25.0% |
| ! | TAATATAAGGGATCTATTCT+TGG | + | chr3.1:53205732-53205751 | MS.gene008389:CDS | 25.0% |
| ! | TAGTAAATATCAAAGATGTG+AGG | - | chr3.1:53205070-53205089 | None:intergenic | 25.0% |
| ! | TGAATTTATGAGTTTAACAG+TGG | + | chr3.1:53205651-53205670 | MS.gene008389:CDS | 25.0% |
| !! | TACCAAACCATTTTCTAAAT+TGG | - | chr3.1:53205705-53205724 | None:intergenic | 25.0% |
| !!! | TTGATTTTGATGTTTGTGTT+GGG | - | chr3.1:53204804-53204823 | None:intergenic | 25.0% |
| AGCCAATTTAGAAAATGGTT+TGG | + | chr3.1:53205700-53205719 | MS.gene008389:CDS | 30.0% | |
| CATTTCCATGTTATTAACAC+TGG | - | chr3.1:53205452-53205471 | None:intergenic | 30.0% | |
| GTGTTAATAACATGGAAATG+CGG | + | chr3.1:53205452-53205471 | MS.gene008389:CDS | 30.0% | |
| !! | ACCTCTTTTTCATGAAAACT+CGG | - | chr3.1:53204742-53204761 | None:intergenic | 30.0% |
| !! | GTTGATTTTGATGTTTGTGT+TGG | - | chr3.1:53204805-53204824 | None:intergenic | 30.0% |
| !!! | TGCGGTATAGTTTTAAACAA+CGG | + | chr3.1:53205470-53205489 | MS.gene008389:CDS | 30.0% |
| AATTAACAGCTGGTAAACCA+CGG | - | chr3.1:53205903-53205922 | None:intergenic | 35.0% | |
| ATCCATAAGTTTCTCGAAAG+TGG | - | chr3.1:53204900-53204919 | None:intergenic | 35.0% | |
| ATCTTCTATCTGTCGACAAA+GGG | + | chr3.1:53205766-53205785 | MS.gene008389:CDS | 35.0% | |
| GAGCTCGTGAATTTACATAT+TGG | - | chr3.1:53204871-53204890 | None:intergenic | 35.0% | |
| GAGTTTAACAGTGGAAAAGA+TGG | + | chr3.1:53205660-53205679 | MS.gene008389:CDS | 35.0% | |
| GGATTCCAGTGTTAATAACA+TGG | + | chr3.1:53205444-53205463 | MS.gene008389:CDS | 35.0% | |
| TCCATAAGTTTCTCGAAAGT+GGG | - | chr3.1:53204899-53204918 | None:intergenic | 35.0% | |
| TGAGAAGAAGAAGACATCTA+AGG | + | chr3.1:53205585-53205604 | MS.gene008389:CDS | 35.0% | |
| TTTAACAGTGGAAAAGATGG+TGG | + | chr3.1:53205663-53205682 | MS.gene008389:CDS | 35.0% | |
| ! | ACCGAGTTTTCATGAAAAAG+AGG | + | chr3.1:53204738-53204757 | MS.gene008389:CDS | 35.0% |
| ! | TTGTTGTTGAAAGGCTTGTT+CGG | + | chr3.1:53205185-53205204 | MS.gene008389:CDS | 35.0% |
| !! | TGTTTTTCAGCTTTGTGATG+CGG | + | chr3.1:53205321-53205340 | MS.gene008389:CDS | 35.0% |
| !! | TTAGAGCTGTTTTCAAGGTT+TGG | + | chr3.1:53205242-53205261 | MS.gene008389:CDS | 35.0% |
| AAGTTGCAGGACAAAAGTTG+TGG | + | chr3.1:53205925-53205944 | MS.gene008389:CDS | 40.0% | |
| ACAAGCCTTTCAACAACAAG+AGG | - | chr3.1:53205184-53205203 | None:intergenic | 40.0% | |
| ACTGAGTCCTCAAAATCATC+AGG | - | chr3.1:53205283-53205302 | None:intergenic | 40.0% | |
| AGCAAGGATAAGGTCTTGAA+CGG | - | chr3.1:53204951-53204970 | None:intergenic | 40.0% | |
| AGCTGTTAATTCCAAGTTGC+AGG | + | chr3.1:53205912-53205931 | MS.gene008389:CDS | 40.0% | |
| ATCTGTCGACAAAGGGTAAA+AGG | + | chr3.1:53205773-53205792 | MS.gene008389:CDS | 40.0% | |
| ATGGCAGAGTTTGCCTTATA+TGG | + | chr3.1:53205543-53205562 | MS.gene008389:CDS | 40.0% | |
| CAAAGATGTGAGGAAACTTG+CGG | - | chr3.1:53205060-53205079 | None:intergenic | 40.0% | |
| CAAATCCTGTCTATGATGCA+AGG | + | chr3.1:53205845-53205864 | MS.gene008389:CDS | 40.0% | |
| CATTAATAGCCTCAGCTTCA+AGG | - | chr3.1:53205153-53205172 | None:intergenic | 40.0% | |
| CCATAAGTTTCTCGAAAGTG+GGG | - | chr3.1:53204898-53204917 | None:intergenic | 40.0% | |
| CTTGCATCATAGACAGGATT+TGG | - | chr3.1:53205847-53205866 | None:intergenic | 40.0% | |
| GAATACTCATCTGTTGAAGC+TGG | + | chr3.1:53205351-53205370 | MS.gene008389:CDS | 40.0% | |
| GATCTTCTATCTGTCGACAA+AGG | + | chr3.1:53205765-53205784 | MS.gene008389:CDS | 40.0% | |
| GCATCAGTTAACCTGCAAAA+CGG | - | chr3.1:53205112-53205131 | None:intergenic | 40.0% | |
| GGAATTCAACAGAGACTGAT+CGG | - | chr3.1:53204985-53205004 | None:intergenic | 40.0% | |
| TGCAACTTGGAATTAACAGC+TGG | - | chr3.1:53205913-53205932 | None:intergenic | 40.0% | |
| TGGCAGAGTTTGCCTTATAT+GGG | + | chr3.1:53205544-53205563 | MS.gene008389:CDS | 40.0% | |
| TTCTCACTGACCATCTCATA+CGG | - | chr3.1:53205571-53205590 | None:intergenic | 40.0% | |
| TTTAAACAACGGTATCCTCC+AGG | + | chr3.1:53205481-53205500 | MS.gene008389:CDS | 40.0% | |
| ! | AAGAAGAAGACATCTAAGGC+TGG | + | chr3.1:53205589-53205608 | MS.gene008389:CDS | 40.0% |
| ! | AAGGCACACTGTTTTCTTGA+GGG | + | chr3.1:53205792-53205811 | MS.gene008389:CDS | 40.0% |
| ! | ACAACTTTTGTCCTGCAACT+TGG | - | chr3.1:53205926-53205945 | None:intergenic | 40.0% |
| ! | GGTTGTCAAGTGTTGTAAAG+AGG | + | chr3.1:53205423-53205442 | MS.gene008389:CDS | 40.0% |
| ! | TGGTCTTCCTGATGATTTTG+AGG | + | chr3.1:53205273-53205292 | MS.gene008389:CDS | 40.0% |
| !! | AAAGGCACACTGTTTTCTTG+AGG | + | chr3.1:53205791-53205810 | MS.gene008389:CDS | 40.0% |
| !! | ACCTTGAAAACAGCTCTAAG+AGG | - | chr3.1:53205241-53205260 | None:intergenic | 40.0% |
| !! | AGCTGTTTTCAAGGTTTGGA+GGG | + | chr3.1:53205246-53205265 | MS.gene008389:CDS | 40.0% |
| !! | CTTTGCCTCTTGTTGTTGAA+AGG | + | chr3.1:53205176-53205195 | MS.gene008389:CDS | 40.0% |
| !! | GCAGCTCTAAAACCATTGTT+AGG | - | chr3.1:53205388-53205407 | None:intergenic | 40.0% |
| !! | GTTGGTGATGTTCCTAACAA+TGG | + | chr3.1:53205373-53205392 | MS.gene008389:CDS | 40.0% |
| !! | TCCTCTTAGAGCTGTTTTCA+AGG | + | chr3.1:53205237-53205256 | MS.gene008389:CDS | 40.0% |
| AAAGAGGTCGCTCACTCAAA+TGG | + | chr3.1:53204754-53204773 | MS.gene008389:CDS | 45.0% | |
| AAGAGGTCGCTCACTCAAAT+GGG | + | chr3.1:53204755-53204774 | MS.gene008389:CDS | 45.0% | |
| ACTCATCTGTTGAAGCTGGT+TGG | + | chr3.1:53205355-53205374 | MS.gene008389:CDS | 45.0% | |
| ACTCTGCCATTCCTTCACAT+TGG | - | chr3.1:53205533-53205552 | None:intergenic | 45.0% | |
| ATCTATTCTTGGATCACCCG+GGG | + | chr3.1:53205743-53205762 | MS.gene008389:CDS | 45.0% | |
| ATCTCATACGGCCCCATATA+AGG | - | chr3.1:53205559-53205578 | None:intergenic | 45.0% | |
| CCCCACTTTCGAGAAACTTA+TGG | + | chr3.1:53204895-53204914 | MS.gene008389:CDS | 45.0% | |
| CTGTCTATGATGCAAGGAGA+AGG | + | chr3.1:53205851-53205870 | MS.gene008389:CDS | 45.0% | |
| CTTCTCCTTGCATCATAGAC+AGG | - | chr3.1:53205853-53205872 | None:intergenic | 45.0% | |
| GAACTTCAGAGCCAATGTGA+AGG | + | chr3.1:53205519-53205538 | MS.gene008389:CDS | 45.0% | |
| GATCTATTCTTGGATCACCC+GGG | + | chr3.1:53205742-53205761 | MS.gene008389:CDS | 45.0% | |
| GGACAAAAGTTGTGGCAATG+AGG | + | chr3.1:53205933-53205952 | MS.gene008389:CDS | 45.0% | |
| GGATCTATTCTTGGATCACC+CGG | + | chr3.1:53205741-53205760 | MS.gene008389:CDS | 45.0% | |
| GGCAGAGTTTGCCTTATATG+GGG | + | chr3.1:53205545-53205564 | MS.gene008389:CDS | 45.0% | |
| GTCTATGTCTGCTTCCAGAA+CGG | + | chr3.1:53205213-53205232 | MS.gene008389:CDS | 45.0% | |
| GTGGCAATGAGGTTGAACAA+GGG | + | chr3.1:53205944-53205963 | MS.gene008389:CDS | 45.0% | |
| TCAGAGCCAATGTGAAGGAA+TGG | + | chr3.1:53205524-53205543 | MS.gene008389:CDS | 45.0% | |
| TGGCAATGAGGTTGAACAAG+GGG | + | chr3.1:53205945-53205964 | MS.gene008389:CDS | 45.0% | |
| TGTGGCAATGAGGTTGAACA+AGG | + | chr3.1:53205943-53205962 | MS.gene008389:CDS | 45.0% | |
| TTAGAGCTGCTGTTGAGGAT+TGG | + | chr3.1:53205398-53205417 | MS.gene008389:CDS | 45.0% | |
| TTATATGGGGCCGTATGAGA+TGG | + | chr3.1:53205558-53205577 | MS.gene008389:CDS | 45.0% | |
| TTGAGGGAAGCTTATGAACG+AGG | + | chr3.1:53205808-53205827 | MS.gene008389:CDS | 45.0% | |
| ! | AACAGAGACTGATCGGTTTC+TGG | - | chr3.1:53204978-53204997 | None:intergenic | 45.0% |
| ! | ACAGAGACTGATCGGTTTCT+GGG | - | chr3.1:53204977-53204996 | None:intergenic | 45.0% |
| ! | GAACGGCAATGACTTTGAGA+AGG | - | chr3.1:53204934-53204953 | None:intergenic | 45.0% |
| ! | GACATCTAAGGCTGGAATGA+TGG | + | chr3.1:53205597-53205616 | MS.gene008389:CDS | 45.0% |
| !! | GAGCTGTTTTCAAGGTTTGG+AGG | + | chr3.1:53205245-53205264 | MS.gene008389:CDS | 45.0% |
| !! | TTCTGGGGTTAGCAAGGATA+AGG | - | chr3.1:53204961-53204980 | None:intergenic | 45.0% |
| !!! | TGGTTTTAGAGCTGCTGTTG+AGG | + | chr3.1:53205393-53205412 | MS.gene008389:CDS | 45.0% |
| AACGGTATCCTCCAGGAATG+CGG | + | chr3.1:53205488-53205507 | MS.gene008389:CDS | 50.0% | |
| AGATGTGAGGAAACTTGCGG+AGG | - | chr3.1:53205057-53205076 | None:intergenic | 50.0% | |
| AGCTGCTGTTGAGGATTGGA+GGG | + | chr3.1:53205402-53205421 | MS.gene008389:CDS | 50.0% | |
| CAAAACGGCTGCAACTTGGA+AGG | - | chr3.1:53205097-53205116 | None:intergenic | 50.0% | |
| GTCGACAGATAGAAGATCCC+CGG | - | chr3.1:53205763-53205782 | None:intergenic | 50.0% | |
| TCGACAGATAGAAGATCCCC+GGG | - | chr3.1:53205762-53205781 | None:intergenic | 50.0% | |
| TGTTTCGCACCTTGAAGCTG+AGG | + | chr3.1:53205141-53205160 | MS.gene008389:CDS | 50.0% | |
| TTCAAGGTTTGGAGGGAGCT+TGG | + | chr3.1:53205253-53205272 | MS.gene008389:CDS | 50.0% | |
| TTCTTGCTCAACCGCATTCC+TGG | - | chr3.1:53205502-53205521 | None:intergenic | 50.0% | |
| ! | CAGAGACTGATCGGTTTCTG+GGG | - | chr3.1:53204976-53204995 | None:intergenic | 50.0% |
| ! | GCTTCTGAGAGAGATTGGAG+AGG | - | chr3.1:53205006-53205025 | None:intergenic | 50.0% |
| ! | GTGGAGCTTCTGAGAGAGAT+TGG | - | chr3.1:53205011-53205030 | None:intergenic | 50.0% |
| ! | TAAGGCTGGAATGATGGCGA+TGG | + | chr3.1:53205603-53205622 | MS.gene008389:CDS | 50.0% |
| !! | AGCTCTAAGAGGAACCGTTC+TGG | - | chr3.1:53205230-53205249 | None:intergenic | 50.0% |
| !! | ATCGGTTTCTGGGGTTAGCA+AGG | - | chr3.1:53204967-53204986 | None:intergenic | 50.0% |
| !! | CTTGTTGCTTTAGAACGCCG+TGG | + | chr3.1:53205883-53205902 | MS.gene008389:CDS | 50.0% |
| AAACTTGCGGAGGAAGGCAG+TGG | - | chr3.1:53205047-53205066 | None:intergenic | 55.0% | |
| CAGAAGCTCCACCTTAACCG+CGG | + | chr3.1:53205019-53205038 | MS.gene008389:CDS | 55.0% | |
| CCTGCAAAACGGCTGCAACT+TGG | - | chr3.1:53205101-53205120 | None:intergenic | 55.0% | |
| GAGCTGCTGTTGAGGATTGG+AGG | + | chr3.1:53205401-53205420 | MS.gene008389:CDS | 55.0% | |
| GTGAGGAAACTTGCGGAGGA+AGG | - | chr3.1:53205053-53205072 | None:intergenic | 55.0% | |
| TTGCTCAACCGCATTCCTGG+AGG | - | chr3.1:53205499-53205518 | None:intergenic | 55.0% | |
| !! | CCAAGTTGCAGCCGTTTTGC+AGG | + | chr3.1:53205098-53205117 | MS.gene008389:CDS | 55.0% |
| GATGGCGATGGAGAAGCGAG+CGG | + | chr3.1:53205615-53205634 | MS.gene008389:CDS | 60.0% | |
| AGGCAGTGGCACCGCGGTTA+AGG | - | chr3.1:53205033-53205052 | None:intergenic | 65.0% | |
| CAGTGGCACCGCGGTTAAGG+TGG | - | chr3.1:53205030-53205049 | None:intergenic | 65.0% | |
| GGAGGAAGGCAGTGGCACCG+CGG | - | chr3.1:53205039-53205058 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53204731 | 53206008 | 53204731 | ID=MS.gene008389 |
| chr3.1 | mRNA | 53204731 | 53206008 | 53204731 | ID=MS.gene008389.t1;Parent=MS.gene008389 |
| chr3.1 | exon | 53204731 | 53206008 | 53204731 | ID=MS.gene008389.t1.exon1;Parent=MS.gene008389.t1 |
| chr3.1 | CDS | 53204731 | 53206008 | 53204731 | ID=cds.MS.gene008389.t1;Parent=MS.gene008389.t1 |
| Gene Sequence |
| Protein sequence |
