Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013931.t1 | XP_024625164.1 | 97.6 | 289 | 7 | 0 | 1 | 289 | 129 | 417 | 6.80E-155 | 556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013931.t1 | Q689D6 | 44.0 | 243 | 124 | 3 | 18 | 248 | 148 | 390 | 6.2e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013931.t1 | G7L4S6 | 97.6 | 289 | 7 | 0 | 1 | 289 | 129 | 417 | 4.9e-155 | 556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05082 | MS.gene013931 | PPI |
| MS.gene013931 | MS.gene55679 | PPI |
| MS.gene013931 | MS.gene008389 | PPI |
| MS.gene049632 | MS.gene013931 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013931.t1 | MTR_7g088530 | 97.578 | 289 | 7 | 0 | 1 | 289 | 129 | 417 | 0.0 | 566 |
| MS.gene013931.t1 | MTR_3g063230 | 45.607 | 239 | 118 | 4 | 19 | 245 | 153 | 391 | 2.83e-62 | 202 |
| MS.gene013931.t1 | MTR_6g033595 | 45.868 | 242 | 119 | 4 | 19 | 248 | 149 | 390 | 2.73e-59 | 196 |
| MS.gene013931.t1 | MTR_2g067960 | 42.975 | 242 | 126 | 4 | 19 | 248 | 114 | 355 | 5.14e-52 | 176 |
| MS.gene013931.t1 | MTR_3g063230 | 41.841 | 239 | 103 | 5 | 19 | 245 | 153 | 367 | 3.88e-51 | 173 |
| MS.gene013931.t1 | MTR_3g105530 | 37.363 | 273 | 146 | 8 | 5 | 260 | 121 | 385 | 4.10e-43 | 152 |
| MS.gene013931.t1 | MTR_8g089370 | 34.413 | 247 | 152 | 4 | 8 | 246 | 130 | 374 | 3.74e-36 | 133 |
| MS.gene013931.t1 | MTR_1g072550 | 31.461 | 267 | 174 | 3 | 8 | 268 | 128 | 391 | 8.35e-35 | 130 |
| MS.gene013931.t1 | MTR_7g117270 | 32.982 | 285 | 182 | 4 | 3 | 278 | 170 | 454 | 1.15e-34 | 131 |
| MS.gene013931.t1 | MTR_1g032040 | 31.439 | 264 | 172 | 3 | 8 | 265 | 128 | 388 | 3.47e-34 | 128 |
| MS.gene013931.t1 | MTR_1g032380 | 31.439 | 264 | 172 | 3 | 8 | 265 | 128 | 388 | 3.47e-34 | 128 |
| MS.gene013931.t1 | MTR_7g107280 | 29.960 | 247 | 160 | 3 | 8 | 243 | 122 | 366 | 5.74e-34 | 128 |
| MS.gene013931.t1 | MTR_6g043850 | 31.858 | 226 | 146 | 3 | 18 | 240 | 131 | 351 | 3.44e-32 | 125 |
| MS.gene013931.t1 | MTR_0153s0070 | 36.449 | 214 | 113 | 7 | 5 | 201 | 128 | 335 | 4.82e-30 | 116 |
| MS.gene013931.t1 | MTR_3g030020 | 30.196 | 255 | 160 | 3 | 1 | 249 | 58 | 300 | 7.15e-29 | 113 |
| MS.gene013931.t1 | MTR_1g019170 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 7.56e-29 | 114 |
| MS.gene013931.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 1.05e-28 | 115 |
| MS.gene013931.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 1.09e-28 | 115 |
| MS.gene013931.t1 | MTR_0153s0070 | 32.222 | 270 | 124 | 9 | 5 | 256 | 98 | 326 | 1.73e-27 | 109 |
| MS.gene013931.t1 | MTR_1g098960 | 30.544 | 239 | 148 | 3 | 1 | 233 | 103 | 329 | 3.08e-27 | 109 |
| MS.gene013931.t1 | MTR_4g053720 | 30.000 | 230 | 150 | 3 | 13 | 233 | 120 | 347 | 1.24e-26 | 107 |
| MS.gene013931.t1 | MTR_3g083350 | 31.278 | 227 | 147 | 6 | 19 | 240 | 168 | 390 | 2.32e-23 | 100 |
| MS.gene013931.t1 | MTR_3g074730 | 28.926 | 242 | 148 | 7 | 1 | 228 | 140 | 371 | 1.04e-20 | 91.3 |
| MS.gene013931.t1 | MTR_7g018630 | 28.519 | 270 | 169 | 6 | 8 | 262 | 142 | 402 | 2.21e-19 | 87.8 |
| MS.gene013931.t1 | MTR_3g448960 | 25.417 | 240 | 134 | 6 | 1 | 233 | 103 | 304 | 3.86e-14 | 72.4 |
| MS.gene013931.t1 | MTR_8g102038 | 28.571 | 175 | 98 | 4 | 13 | 170 | 74 | 238 | 4.47e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013931.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 66 | 352 | 1.28e-122 | 355 |
| MS.gene013931.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 151 | 437 | 8.15e-122 | 355 |
| MS.gene013931.t1 | AT1G06440 | 47.479 | 238 | 113 | 4 | 19 | 244 | 137 | 374 | 3.82e-63 | 204 |
| MS.gene013931.t1 | AT4G33495 | 44.444 | 243 | 123 | 4 | 18 | 248 | 148 | 390 | 4.33e-58 | 191 |
| MS.gene013931.t1 | AT5G48040 | 38.866 | 247 | 135 | 5 | 8 | 246 | 132 | 370 | 1.55e-42 | 151 |
| MS.gene013931.t1 | AT3G58520 | 32.400 | 250 | 151 | 4 | 8 | 243 | 113 | 358 | 3.06e-39 | 142 |
| MS.gene013931.t1 | AT3G58520 | 32.400 | 250 | 151 | 4 | 8 | 243 | 125 | 370 | 4.76e-39 | 142 |
| MS.gene013931.t1 | AT4G01037 | 35.060 | 251 | 153 | 5 | 3 | 244 | 162 | 411 | 3.32e-36 | 135 |
| MS.gene013931.t1 | AT5G21970 | 34.008 | 247 | 148 | 4 | 18 | 254 | 155 | 396 | 5.47e-36 | 134 |
| MS.gene013931.t1 | AT5G21970 | 34.008 | 247 | 148 | 4 | 18 | 254 | 155 | 396 | 5.47e-36 | 134 |
| MS.gene013931.t1 | AT1G79120 | 33.778 | 225 | 135 | 3 | 19 | 229 | 160 | 384 | 1.02e-33 | 127 |
| MS.gene013931.t1 | AT1G79120 | 33.778 | 225 | 135 | 3 | 19 | 229 | 160 | 384 | 1.02e-33 | 127 |
| MS.gene013931.t1 | AT1G71850 | 30.827 | 266 | 173 | 5 | 19 | 277 | 134 | 395 | 2.00e-32 | 124 |
| MS.gene013931.t1 | AT2G31290 | 32.157 | 255 | 143 | 4 | 1 | 243 | 108 | 344 | 5.96e-31 | 120 |
| MS.gene013931.t1 | AT2G31290 | 32.157 | 255 | 143 | 4 | 1 | 243 | 108 | 344 | 5.96e-31 | 120 |
| MS.gene013931.t1 | AT4G24320 | 32.197 | 264 | 163 | 5 | 19 | 270 | 127 | 386 | 5.82e-29 | 114 |
| MS.gene013931.t1 | AT3G63090 | 28.992 | 238 | 161 | 2 | 8 | 240 | 131 | 365 | 5.70e-28 | 111 |
| MS.gene013931.t1 | AT5G62990 | 31.429 | 245 | 153 | 6 | 1 | 240 | 158 | 392 | 4.69e-24 | 101 |
| MS.gene013931.t1 | AT2G39120 | 31.395 | 258 | 158 | 6 | 3 | 247 | 117 | 368 | 7.69e-23 | 97.4 |
| MS.gene013931.t1 | AT4G08940 | 26.809 | 235 | 157 | 5 | 1 | 228 | 148 | 374 | 3.45e-16 | 78.6 |
Find 77 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCGGTTGGAAAATTTAT+TGG | 0.170400 | 7.1:+17786170 | None:intergenic |
| ATGTTGGAGCTTGTGTTATT+AGG | 0.181468 | 7.1:-17785792 | MS.gene013931:CDS |
| TAAGATTGAGAGAGGGTTTA+GGG | 0.240031 | 7.1:-17786147 | MS.gene013931:CDS |
| TGATTGGGTGATTCCATTCT+TGG | 0.283082 | 7.1:-17785670 | MS.gene013931:CDS |
| ATGAGGTTGAGGTTGTTAAA+AGG | 0.287196 | 7.1:-17786454 | MS.gene013931:CDS |
| TTAAGATTGAGAGAGGGTTT+AGG | 0.303009 | 7.1:-17786148 | MS.gene013931:CDS |
| TGAGTTTAAGTTGGTTGATT+TGG | 0.304197 | 7.1:-17786309 | MS.gene013931:CDS |
| TGTTGGAGCTTGTGTTATTA+GGG | 0.309712 | 7.1:-17785791 | MS.gene013931:CDS |
| GAGGTTGATCAGAAGAGAAT+TGG | 0.313244 | 7.1:-17786378 | MS.gene013931:CDS |
| GAGTTTGACTGTGGAGAAAA+TGG | 0.348977 | 7.1:-17786006 | MS.gene013931:CDS |
| GGTTGGTTGGGACGATGAAT+TGG | 0.349605 | 7.1:-17786273 | MS.gene013931:CDS |
| GATTTCAGAGAATCCATTCT+TGG | 0.361428 | 7.1:-17786344 | MS.gene013931:CDS |
| CGCTTCATTTGCATGCTTTG+AGG | 0.362675 | 7.1:-17786397 | MS.gene013931:CDS |
| GATTGTGGCGTTGGTTGGTT+GGG | 0.376171 | 7.1:-17786285 | MS.gene013931:CDS |
| GTTGGTTGGGACGATGAATT+GGG | 0.377034 | 7.1:-17786272 | MS.gene013931:CDS |
| AATGGTTGAGGTTGATCAAT+TGG | 0.380904 | 7.1:-17785988 | MS.gene013931:CDS |
| CTCAGGGAGGCTTATGAGAA+AGG | 0.394166 | 7.1:-17785858 | MS.gene013931:CDS |
| TACAGCATTGCTCTCTTCCT+TGG | 0.400352 | 7.1:+17785728 | None:intergenic |
| GATGAAGGAGTTGATATTGT+TGG | 0.411641 | 7.1:-17786498 | MS.gene013931:CDS |
| GAGGTAAAAGAGAAGGTGAT+TGG | 0.417799 | 7.1:-17785686 | MS.gene013931:CDS |
| ACAAGAAGCTAACAACTGTT+TGG | 0.418330 | 7.1:+17785758 | None:intergenic |
| AGGGTTTAGGGAAAAGTTGA+AGG | 0.426775 | 7.1:-17786135 | MS.gene013931:CDS |
| TTCTCATTAGCCTCCAAGAA+TGG | 0.428003 | 7.1:+17785657 | None:intergenic |
| CGAGTTACTCCTTAGGCATC+CGG | 0.438028 | 7.1:-17785925 | MS.gene013931:CDS |
| AGATTGTGGCGTTGGTTGGT+TGG | 0.438076 | 7.1:-17786286 | MS.gene013931:CDS |
| ATTTATTGGAAAAGCAAACT+TGG | 0.439418 | 7.1:+17786184 | None:intergenic |
| AGGTTGATCAGAAGAGAATT+GGG | 0.442727 | 7.1:-17786377 | MS.gene013931:CDS |
| ATTTCAGAGAATCCATTCTT+GGG | 0.446471 | 7.1:-17786343 | MS.gene013931:CDS |
| CGAACTTCATACACCGGATT+AGG | 0.447375 | 7.1:+17785822 | None:intergenic |
| TGAGGTTGAGGTTGTTAAAA+GGG | 0.448306 | 7.1:-17786453 | MS.gene013931:CDS |
| TTGGGTGATTCCATTCTTGG+AGG | 0.459234 | 7.1:-17785667 | MS.gene013931:CDS |
| TTGGAGATTGTGGCGTTGGT+TGG | 0.470118 | 7.1:-17786290 | MS.gene013931:CDS |
| TGATTTGGAGATTGTGGCGT+TGG | 0.472947 | 7.1:-17786294 | MS.gene013931:CDS |
| AGAGAGAGTACAGAGAGAAA+TGG | 0.480196 | 7.1:-17786223 | MS.gene013931:CDS |
| GTTGGTTGATTTGGAGATTG+TGG | 0.488895 | 7.1:-17786300 | MS.gene013931:CDS |
| AGGTAAAAGAGAAGGTGATT+GGG | 0.493014 | 7.1:-17785685 | MS.gene013931:CDS |
| CTCTCAATCTTAAACCCGGT+TGG | 0.493976 | 7.1:+17786158 | None:intergenic |
| AGGGTTGATTGAGCCTAATC+CGG | 0.502812 | 7.1:-17785835 | MS.gene013931:CDS |
| GACTGTGGAGAAAATGGTTG+AGG | 0.510514 | 7.1:-17786000 | MS.gene013931:CDS |
| GGAGTTGATATTGTTGGAAG+AGG | 0.511941 | 7.1:-17786492 | MS.gene013931:CDS |
| ATCACAATATCTCCCAAGAA+TGG | 0.515963 | 7.1:+17786331 | None:intergenic |
| TGAAGTTCGTAGAAATATGT+TGG | 0.520781 | 7.1:-17785808 | MS.gene013931:CDS |
| TTAAGTGTGGTGGGGTTCAG+AGG | 0.525566 | 7.1:-17786067 | MS.gene013931:CDS |
| GAATGGCGCTTGTTGAGGAA+TGG | 0.529453 | 7.1:-17786250 | MS.gene013931:CDS |
| CCCTCTCTCAATCTTAAACC+CGG | 0.530721 | 7.1:+17786154 | None:intergenic |
| ATATTGTGATGAGTTTAAGT+TGG | 0.537844 | 7.1:-17786318 | MS.gene013931:CDS |
| TTAGGGAAAAGTTGAAGGGT+TGG | 0.539829 | 7.1:-17786130 | MS.gene013931:CDS |
| AGCTTCTTGTGATGAATCCA+AGG | 0.542578 | 7.1:-17785745 | MS.gene013931:CDS |
| GAGTTACTCCTTAGGCATCC+GGG | 0.542983 | 7.1:-17785924 | MS.gene013931:CDS |
| TTGGGACGATGAATTGGGAA+TGG | 0.561957 | 7.1:-17786267 | MS.gene013931:CDS |
| AAAATATCCCCGGATGCCTA+AGG | 0.562970 | 7.1:+17785916 | None:intergenic |
| GGGTTTAGGGAAAAGTTGAA+GGG | 0.563298 | 7.1:-17786134 | MS.gene013931:CDS |
| GTAGATATGTAAAATATCCC+CGG | 0.567673 | 7.1:+17785906 | None:intergenic |
| AAAAGTTGAAGGGTTGGCAA+AGG | 0.572365 | 7.1:-17786124 | MS.gene013931:CDS |
| GGCGCTTGTTGAGGAATGGA+GGG | 0.582319 | 7.1:-17786246 | MS.gene013931:CDS |
| TTTCTACGAACTTCATACAC+CGG | 0.585037 | 7.1:+17785816 | None:intergenic |
| TGGCGCTTGTTGAGGAATGG+AGG | 0.587828 | 7.1:-17786247 | MS.gene013931:CDS |
| TTGCTTATGATGTCGGTGAA+TGG | 0.588157 | 7.1:-17786422 | MS.gene013931:CDS |
| CTGTAGTCTATGAAGTGGAT+GGG | 0.589627 | 7.1:-17785710 | MS.gene013931:CDS |
| ACCGGGTTTAAGATTGAGAG+AGG | 0.590903 | 7.1:-17786155 | MS.gene013931:CDS |
| ATGGATTCTCTGAAATCACT+AGG | 0.592317 | 7.1:+17786350 | None:intergenic |
| ATGTGCGCGAGTTACTCCTT+AGG | 0.602697 | 7.1:-17785932 | MS.gene013931:CDS |
| ATTGGGAATGGCGCTTGTTG+AGG | 0.606683 | 7.1:-17786255 | MS.gene013931:CDS |
| GGGAGGCTTATGAGAAAGGA+GGG | 0.607467 | 7.1:-17785854 | MS.gene013931:CDS |
| GGTTCAGAGGTATGAGAAGA+GGG | 0.608105 | 7.1:-17786054 | MS.gene013931:CDS |
| GCTGTAGTCTATGAAGTGGA+TGG | 0.611508 | 7.1:-17785711 | MS.gene013931:CDS |
| AGGGAGGCTTATGAGAAAGG+AGG | 0.624503 | 7.1:-17785855 | MS.gene013931:CDS |
| TGTGAGACAACATGAGGTTG+AGG | 0.624520 | 7.1:-17786465 | MS.gene013931:CDS |
| CAATGCTGTAGTCTATGAAG+TGG | 0.626112 | 7.1:-17785715 | MS.gene013931:CDS |
| TGTAGTCTATGAAGTGGATG+GGG | 0.628618 | 7.1:-17785709 | MS.gene013931:CDS |
| GAAGAAGTTGCTTATGATGT+CGG | 0.631934 | 7.1:-17786429 | MS.gene013931:CDS |
| CCGGGTTTAAGATTGAGAGA+GGG | 0.633078 | 7.1:-17786154 | MS.gene013931:CDS |
| GGGTTCAGAGGTATGAGAAG+AGG | 0.636662 | 7.1:-17786055 | MS.gene013931:CDS |
| TGAGCTGTTGAGTTTGACTG+TGG | 0.649610 | 7.1:-17786015 | MS.gene013931:CDS |
| GTAGTCTATGAAGTGGATGG+GGG | 0.660117 | 7.1:-17785708 | MS.gene013931:CDS |
| AGTTACTCCTTAGGCATCCG+GGG | 0.713199 | 7.1:-17785923 | MS.gene013931:CDS |
| GGTTGTTGTGAGACAACATG+AGG | 0.740042 | 7.1:-17786471 | MS.gene013931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTACATATCTACAAA+AGG | - | chr7.1:17786247-17786266 | MS.gene013931:CDS | 15.0% |
| !!! | TTAACATTTTTTCTCTCATA+AGG | + | chr7.1:17786064-17786083 | None:intergenic | 20.0% |
| ! | ATATTGTGATGAGTTTAAGT+TGG | - | chr7.1:17785829-17785848 | MS.gene013931:CDS | 25.0% |
| ! | ATTTATTGGAAAAGCAAACT+TGG | + | chr7.1:17785966-17785985 | None:intergenic | 25.0% |
| !! | TTTCCAATAAATTTTCCAAC+CGG | - | chr7.1:17785974-17785993 | MS.gene013931:CDS | 25.0% |
| AAAAAATGTTAAGTGTGGTG+GGG | - | chr7.1:17786072-17786091 | MS.gene013931:CDS | 30.0% | |
| AGAAAAAATGTTAAGTGTGG+TGG | - | chr7.1:17786070-17786089 | MS.gene013931:CDS | 30.0% | |
| ATTTCAGAGAATCCATTCTT+GGG | - | chr7.1:17785804-17785823 | MS.gene013931:CDS | 30.0% | |
| GAAAAAATGTTAAGTGTGGT+GGG | - | chr7.1:17786071-17786090 | MS.gene013931:CDS | 30.0% | |
| GAGAGAAAAAATGTTAAGTG+TGG | - | chr7.1:17786067-17786086 | MS.gene013931:CDS | 30.0% | |
| GTAGATATGTAAAATATCCC+CGG | + | chr7.1:17786244-17786263 | None:intergenic | 30.0% | |
| TGAAGTTCGTAGAAATATGT+TGG | - | chr7.1:17786339-17786358 | MS.gene013931:CDS | 30.0% | |
| ! | TTCCAATAAATTTTCCAACC+GGG | - | chr7.1:17785975-17785994 | MS.gene013931:CDS | 30.0% |
| !! | TGAGTTTAAGTTGGTTGATT+TGG | - | chr7.1:17785838-17785857 | MS.gene013931:CDS | 30.0% |
| AACCCGGTTGGAAAATTTAT+TGG | + | chr7.1:17785980-17785999 | None:intergenic | 35.0% | |
| ACAAGAAGCTAACAACTGTT+TGG | + | chr7.1:17786392-17786411 | None:intergenic | 35.0% | |
| AGGTAAAAGAGAAGGTGATT+GGG | - | chr7.1:17786462-17786481 | MS.gene013931:CDS | 35.0% | |
| ATCACAATATCTCCCAAGAA+TGG | + | chr7.1:17785819-17785838 | None:intergenic | 35.0% | |
| ATGAGGTTGAGGTTGTTAAA+AGG | - | chr7.1:17785693-17785712 | MS.gene013931:CDS | 35.0% | |
| GAAGAAGTTGCTTATGATGT+CGG | - | chr7.1:17785718-17785737 | MS.gene013931:CDS | 35.0% | |
| GATTTCAGAGAATCCATTCT+TGG | - | chr7.1:17785803-17785822 | MS.gene013931:CDS | 35.0% | |
| TAAGATTGAGAGAGGGTTTA+GGG | - | chr7.1:17786000-17786019 | MS.gene013931:CDS | 35.0% | |
| TGAGGTTGAGGTTGTTAAAA+GGG | - | chr7.1:17785694-17785713 | MS.gene013931:CDS | 35.0% | |
| TTAAGATTGAGAGAGGGTTT+AGG | - | chr7.1:17785999-17786018 | MS.gene013931:CDS | 35.0% | |
| TTTCTACGAACTTCATACAC+CGG | + | chr7.1:17786334-17786353 | None:intergenic | 35.0% | |
| ! | AATGGTTGAGGTTGATCAAT+TGG | - | chr7.1:17786159-17786178 | MS.gene013931:CDS | 35.0% |
| ! | AGGTTGATCAGAAGAGAATT+GGG | - | chr7.1:17785770-17785789 | MS.gene013931:CDS | 35.0% |
| ! | ATGTTGGAGCTTGTGTTATT+AGG | - | chr7.1:17786355-17786374 | MS.gene013931:CDS | 35.0% |
| ! | TGTTGGAGCTTGTGTTATTA+GGG | - | chr7.1:17786356-17786375 | MS.gene013931:CDS | 35.0% |
| !! | ATCAATTGGCTCATTTTCGA+AGG | - | chr7.1:17786173-17786192 | MS.gene013931:CDS | 35.0% |
| !! | ATGCTCTAACTGTTTTTCTC+AGG | - | chr7.1:17786272-17786291 | MS.gene013931:CDS | 35.0% |
| !! | ATGGATTCTCTGAAATCACT+AGG | + | chr7.1:17785800-17785819 | None:intergenic | 35.0% |
| !! | TCAATTGGCTCATTTTCGAA+GGG | - | chr7.1:17786174-17786193 | MS.gene013931:CDS | 35.0% |
| !! | TGCTCTAACTGTTTTTCTCA+GGG | - | chr7.1:17786273-17786292 | MS.gene013931:CDS | 35.0% |
| AGCTTCTTGTGATGAATCCA+AGG | - | chr7.1:17786402-17786421 | MS.gene013931:CDS | 40.0% | |
| AGGGTTTAGGGAAAAGTTGA+AGG | - | chr7.1:17786012-17786031 | MS.gene013931:CDS | 40.0% | |
| CAATGCTGTAGTCTATGAAG+TGG | - | chr7.1:17786432-17786451 | MS.gene013931:CDS | 40.0% | |
| CTGTAGTCTATGAAGTGGAT+GGG | - | chr7.1:17786437-17786456 | MS.gene013931:CDS | 40.0% | |
| GAGGTAAAAGAGAAGGTGAT+TGG | - | chr7.1:17786461-17786480 | MS.gene013931:CDS | 40.0% | |
| GAGTTTGACTGTGGAGAAAA+TGG | - | chr7.1:17786141-17786160 | MS.gene013931:CDS | 40.0% | |
| GGGTTTAGGGAAAAGTTGAA+GGG | - | chr7.1:17786013-17786032 | MS.gene013931:CDS | 40.0% | |
| TGATTGGGTGATTCCATTCT+TGG | - | chr7.1:17786477-17786496 | MS.gene013931:CDS | 40.0% | |
| TGTAGTCTATGAAGTGGATG+GGG | - | chr7.1:17786438-17786457 | MS.gene013931:CDS | 40.0% | |
| TTAGGGAAAAGTTGAAGGGT+TGG | - | chr7.1:17786017-17786036 | MS.gene013931:CDS | 40.0% | |
| TTGCTTATGATGTCGGTGAA+TGG | - | chr7.1:17785725-17785744 | MS.gene013931:CDS | 40.0% | |
| ! | AAAAGTTGAAGGGTTGGCAA+AGG | - | chr7.1:17786023-17786042 | MS.gene013931:CDS | 40.0% |
| ! | AGAGAGAGTACAGAGAGAAA+TGG | - | chr7.1:17785924-17785943 | MS.gene013931:CDS | 40.0% |
| ! | GAGGTTGATCAGAAGAGAAT+TGG | - | chr7.1:17785769-17785788 | MS.gene013931:CDS | 40.0% |
| ! | TTCTCATTAGCCTCCAAGAA+TGG | + | chr7.1:17786493-17786512 | None:intergenic | 40.0% |
| !! | GGAGTTGATATTGTTGGAAG+AGG | - | chr7.1:17785655-17785674 | MS.gene013931:CDS | 40.0% |
| !! | GTTGGTTGATTTGGAGATTG+TGG | - | chr7.1:17785847-17785866 | MS.gene013931:CDS | 40.0% |
| !! | TCTAACTGTTTTTCTCAGGG+AGG | - | chr7.1:17786276-17786295 | MS.gene013931:CDS | 40.0% |
| AAAATATCCCCGGATGCCTA+AGG | + | chr7.1:17786234-17786253 | None:intergenic | 45.0% | |
| CCCTCTCTCAATCTTAAACC+CGG | + | chr7.1:17785996-17786015 | None:intergenic | 45.0% | |
| CGAACTTCATACACCGGATT+AGG | + | chr7.1:17786328-17786347 | None:intergenic | 45.0% | |
| CGCTTCATTTGCATGCTTTG+AGG | - | chr7.1:17785750-17785769 | MS.gene013931:CDS | 45.0% | |
| CTCTCAATCTTAAACCCGGT+TGG | + | chr7.1:17785992-17786011 | None:intergenic | 45.0% | |
| GACTGTGGAGAAAATGGTTG+AGG | - | chr7.1:17786147-17786166 | MS.gene013931:CDS | 45.0% | |
| GCTGTAGTCTATGAAGTGGA+TGG | - | chr7.1:17786436-17786455 | MS.gene013931:CDS | 45.0% | |
| GGTTGTTGTGAGACAACATG+AGG | - | chr7.1:17785676-17785695 | MS.gene013931:CDS | 45.0% | |
| GTAGTCTATGAAGTGGATGG+GGG | - | chr7.1:17786439-17786458 | MS.gene013931:CDS | 45.0% | |
| GTTGGTTGGGACGATGAATT+GGG | - | chr7.1:17785875-17785894 | MS.gene013931:CDS | 45.0% | |
| TACAGCATTGCTCTCTTCCT+TGG | + | chr7.1:17786422-17786441 | None:intergenic | 45.0% | |
| TGAGCTGTTGAGTTTGACTG+TGG | - | chr7.1:17786132-17786151 | MS.gene013931:CDS | 45.0% | |
| TGTGAGACAACATGAGGTTG+AGG | - | chr7.1:17785682-17785701 | MS.gene013931:CDS | 45.0% | |
| TTGGGACGATGAATTGGGAA+TGG | - | chr7.1:17785880-17785899 | MS.gene013931:CDS | 45.0% | |
| TTGGGTGATTCCATTCTTGG+AGG | - | chr7.1:17786480-17786499 | MS.gene013931:CDS | 45.0% | |
| ! | ACCGGGTTTAAGATTGAGAG+AGG | - | chr7.1:17785992-17786011 | MS.gene013931:CDS | 45.0% |
| ! | AGGGTTGATTGAGCCTAATC+CGG | - | chr7.1:17786312-17786331 | MS.gene013931:CDS | 45.0% |
| ! | CCGGGTTTAAGATTGAGAGA+GGG | - | chr7.1:17785993-17786012 | MS.gene013931:CDS | 45.0% |
| ! | GGTTCAGAGGTATGAGAAGA+GGG | - | chr7.1:17786093-17786112 | MS.gene013931:CDS | 45.0% |
| ! | TGATTTGGAGATTGTGGCGT+TGG | - | chr7.1:17785853-17785872 | MS.gene013931:CDS | 45.0% |
| AGGGAGGCTTATGAGAAAGG+AGG | - | chr7.1:17786292-17786311 | MS.gene013931:CDS | 50.0% | |
| AGTTACTCCTTAGGCATCCG+GGG | - | chr7.1:17786224-17786243 | MS.gene013931:CDS | 50.0% | |
| ATGTGCGCGAGTTACTCCTT+AGG | - | chr7.1:17786215-17786234 | MS.gene013931:CDS | 50.0% | |
| CGAGTTACTCCTTAGGCATC+CGG | - | chr7.1:17786222-17786241 | MS.gene013931:CDS | 50.0% | |
| CTCAGGGAGGCTTATGAGAA+AGG | - | chr7.1:17786289-17786308 | MS.gene013931:CDS | 50.0% | |
| GAGTTACTCCTTAGGCATCC+GGG | - | chr7.1:17786223-17786242 | MS.gene013931:CDS | 50.0% | |
| GATGGGGGAGGTAAAAGAGA+AGG | - | chr7.1:17786454-17786473 | MS.gene013931:CDS | 50.0% | |
| GGGAGGCTTATGAGAAAGGA+GGG | - | chr7.1:17786293-17786312 | MS.gene013931:CDS | 50.0% | |
| ! | ATTGGGAATGGCGCTTGTTG+AGG | - | chr7.1:17785892-17785911 | MS.gene013931:CDS | 50.0% |
| ! | GAATGGCGCTTGTTGAGGAA+TGG | - | chr7.1:17785897-17785916 | MS.gene013931:CDS | 50.0% |
| ! | GGGTTCAGAGGTATGAGAAG+AGG | - | chr7.1:17786092-17786111 | MS.gene013931:CDS | 50.0% |
| ! | GGTTGGTTGGGACGATGAAT+TGG | - | chr7.1:17785874-17785893 | MS.gene013931:CDS | 50.0% |
| ! | TTAAGTGTGGTGGGGTTCAG+AGG | - | chr7.1:17786080-17786099 | MS.gene013931:CDS | 50.0% |
| !! | AGATTGTGGCGTTGGTTGGT+TGG | - | chr7.1:17785861-17785880 | MS.gene013931:CDS | 50.0% |
| !! | GATTGTGGCGTTGGTTGGTT+GGG | - | chr7.1:17785862-17785881 | MS.gene013931:CDS | 50.0% |
| !! | TTGGAGATTGTGGCGTTGGT+TGG | - | chr7.1:17785857-17785876 | MS.gene013931:CDS | 50.0% |
| GTCTATGAAGTGGATGGGGG+AGG | - | chr7.1:17786442-17786461 | MS.gene013931:CDS | 55.0% | |
| ! | GGCGCTTGTTGAGGAATGGA+GGG | - | chr7.1:17785901-17785920 | MS.gene013931:CDS | 55.0% |
| ! | TGGCGCTTGTTGAGGAATGG+AGG | - | chr7.1:17785900-17785919 | MS.gene013931:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17785650 | 17786519 | 17785650 | ID=MS.gene013931 |
| chr7.1 | mRNA | 17785650 | 17786519 | 17785650 | ID=MS.gene013931.t1;Parent=MS.gene013931 |
| chr7.1 | exon | 17785650 | 17786519 | 17785650 | ID=MS.gene013931.t1.exon1;Parent=MS.gene013931.t1 |
| chr7.1 | CDS | 17785650 | 17786519 | 17785650 | ID=cds.MS.gene013931.t1;Parent=MS.gene013931.t1 |
| Gene Sequence |
| Protein sequence |
