Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41893.t1 | XP_024625164.1 | 97.2 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 8.80E-155 | 556.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41893.t1 | Q689D6 | 44.0 | 243 | 124 | 3 | 18 | 248 | 148 | 390 | 4.7e-48 | 193.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41893.t1 | G7L4S6 | 97.2 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 6.4e-155 | 556.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055711 | MS.gene41893 | 0.805298 | 1.43E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05082 | MS.gene41893 | PPI |
| MS.gene41893 | MS.gene55679 | PPI |
| MS.gene049632 | MS.gene41893 | PPI |
| MS.gene008389 | MS.gene41893 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41893.t1 | MTR_7g088530 | 97.232 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 0.0 | 568 |
| MS.gene41893.t1 | MTR_3g063230 | 46.025 | 239 | 117 | 4 | 19 | 245 | 153 | 391 | 4.45e-63 | 204 |
| MS.gene41893.t1 | MTR_6g033595 | 45.868 | 242 | 119 | 4 | 19 | 248 | 149 | 390 | 1.34e-59 | 197 |
| MS.gene41893.t1 | MTR_2g067960 | 42.975 | 242 | 126 | 4 | 19 | 248 | 114 | 355 | 2.81e-52 | 177 |
| MS.gene41893.t1 | MTR_3g063230 | 41.841 | 239 | 103 | 5 | 19 | 245 | 153 | 367 | 2.41e-51 | 174 |
| MS.gene41893.t1 | MTR_3g105530 | 37.363 | 273 | 146 | 8 | 5 | 260 | 121 | 385 | 2.78e-43 | 153 |
| MS.gene41893.t1 | MTR_8g089370 | 34.413 | 247 | 152 | 4 | 8 | 246 | 130 | 374 | 2.35e-36 | 134 |
| MS.gene41893.t1 | MTR_1g072550 | 31.461 | 267 | 174 | 3 | 8 | 268 | 128 | 391 | 5.41e-35 | 130 |
| MS.gene41893.t1 | MTR_7g117270 | 33.217 | 286 | 180 | 5 | 3 | 278 | 170 | 454 | 6.63e-35 | 132 |
| MS.gene41893.t1 | MTR_1g032040 | 32.510 | 243 | 156 | 2 | 8 | 245 | 128 | 367 | 2.49e-34 | 128 |
| MS.gene41893.t1 | MTR_1g032380 | 32.510 | 243 | 156 | 2 | 8 | 245 | 128 | 367 | 2.49e-34 | 128 |
| MS.gene41893.t1 | MTR_7g107280 | 29.960 | 247 | 160 | 3 | 8 | 243 | 122 | 366 | 3.30e-34 | 129 |
| MS.gene41893.t1 | MTR_6g043850 | 31.858 | 226 | 146 | 3 | 18 | 240 | 131 | 351 | 2.86e-32 | 125 |
| MS.gene41893.t1 | MTR_0153s0070 | 36.449 | 214 | 113 | 7 | 5 | 201 | 128 | 335 | 2.97e-30 | 116 |
| MS.gene41893.t1 | MTR_1g019170 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 5.70e-29 | 114 |
| MS.gene41893.t1 | MTR_3g030020 | 30.196 | 255 | 160 | 3 | 1 | 249 | 58 | 300 | 5.89e-29 | 114 |
| MS.gene41893.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 7.34e-29 | 115 |
| MS.gene41893.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 7.86e-29 | 115 |
| MS.gene41893.t1 | MTR_1g098960 | 30.962 | 239 | 147 | 3 | 1 | 233 | 103 | 329 | 8.86e-28 | 111 |
| MS.gene41893.t1 | MTR_0153s0070 | 32.222 | 270 | 124 | 9 | 5 | 256 | 98 | 326 | 1.55e-27 | 110 |
| MS.gene41893.t1 | MTR_4g053720 | 30.000 | 230 | 150 | 3 | 13 | 233 | 120 | 347 | 7.93e-27 | 107 |
| MS.gene41893.t1 | MTR_3g083350 | 31.278 | 227 | 147 | 6 | 19 | 240 | 168 | 390 | 1.04e-23 | 100 |
| MS.gene41893.t1 | MTR_3g074730 | 28.926 | 242 | 148 | 7 | 1 | 228 | 140 | 371 | 7.60e-21 | 91.7 |
| MS.gene41893.t1 | MTR_7g018630 | 28.832 | 274 | 168 | 7 | 18 | 276 | 152 | 413 | 9.54e-20 | 89.0 |
| MS.gene41893.t1 | MTR_3g448960 | 25.833 | 240 | 133 | 6 | 1 | 233 | 103 | 304 | 9.93e-15 | 74.3 |
| MS.gene41893.t1 | MTR_8g102038 | 28.000 | 175 | 99 | 4 | 13 | 170 | 74 | 238 | 4.05e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41893.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 66 | 352 | 3.33e-123 | 356 |
| MS.gene41893.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 151 | 437 | 1.47e-122 | 357 |
| MS.gene41893.t1 | AT1G06440 | 47.479 | 238 | 113 | 4 | 19 | 244 | 137 | 374 | 1.60e-63 | 205 |
| MS.gene41893.t1 | AT4G33495 | 44.444 | 243 | 123 | 4 | 18 | 248 | 148 | 390 | 2.65e-58 | 192 |
| MS.gene41893.t1 | AT5G48040 | 38.866 | 247 | 135 | 5 | 8 | 246 | 132 | 370 | 9.60e-43 | 151 |
| MS.gene41893.t1 | AT3G58520 | 32.400 | 250 | 151 | 4 | 8 | 243 | 113 | 358 | 2.36e-39 | 142 |
| MS.gene41893.t1 | AT3G58520 | 32.400 | 250 | 151 | 4 | 8 | 243 | 125 | 370 | 3.71e-39 | 142 |
| MS.gene41893.t1 | AT5G21970 | 34.146 | 246 | 147 | 4 | 18 | 253 | 155 | 395 | 2.15e-36 | 135 |
| MS.gene41893.t1 | AT5G21970 | 34.146 | 246 | 147 | 4 | 18 | 253 | 155 | 395 | 2.15e-36 | 135 |
| MS.gene41893.t1 | AT4G01037 | 35.317 | 252 | 151 | 6 | 3 | 244 | 162 | 411 | 2.58e-36 | 136 |
| MS.gene41893.t1 | AT1G79120 | 33.778 | 225 | 135 | 3 | 19 | 229 | 160 | 384 | 4.06e-34 | 128 |
| MS.gene41893.t1 | AT1G79120 | 33.778 | 225 | 135 | 3 | 19 | 229 | 160 | 384 | 4.06e-34 | 128 |
| MS.gene41893.t1 | AT1G71850 | 30.827 | 266 | 173 | 5 | 19 | 277 | 134 | 395 | 1.79e-32 | 125 |
| MS.gene41893.t1 | AT2G31290 | 32.549 | 255 | 142 | 4 | 1 | 243 | 108 | 344 | 1.79e-31 | 121 |
| MS.gene41893.t1 | AT2G31290 | 32.549 | 255 | 142 | 4 | 1 | 243 | 108 | 344 | 1.79e-31 | 121 |
| MS.gene41893.t1 | AT4G24320 | 32.197 | 264 | 163 | 5 | 19 | 270 | 127 | 386 | 4.56e-29 | 114 |
| MS.gene41893.t1 | AT3G63090 | 28.992 | 238 | 161 | 2 | 8 | 240 | 131 | 365 | 4.95e-28 | 112 |
| MS.gene41893.t1 | AT5G62990 | 31.429 | 245 | 153 | 6 | 1 | 240 | 158 | 392 | 3.01e-24 | 102 |
| MS.gene41893.t1 | AT2G39120 | 31.395 | 258 | 158 | 6 | 3 | 247 | 117 | 368 | 2.46e-23 | 98.6 |
| MS.gene41893.t1 | AT4G08940 | 26.809 | 235 | 157 | 5 | 1 | 228 | 148 | 374 | 1.95e-16 | 79.3 |
Find 76 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCGGTTGGAAAATTTAT+TGG | 0.170400 | 7.2:+20248788 | None:intergenic |
| ATGTTGGAGCTTGTGTTATT+AGG | 0.181468 | 7.2:-20248410 | MS.gene41893:CDS |
| TAAGATTGAGAGAGGGTTTA+GGG | 0.240031 | 7.2:-20248765 | MS.gene41893:CDS |
| ATGAGATTGAGGTTGTTAAA+AGG | 0.250006 | 7.2:-20249072 | MS.gene41893:CDS |
| TGATTGGGTGATTCCATTCT+TGG | 0.283082 | 7.2:-20248288 | MS.gene41893:CDS |
| TTAAGATTGAGAGAGGGTTT+AGG | 0.303009 | 7.2:-20248766 | MS.gene41893:CDS |
| TGAGTTTAAGTTGGTTGATT+TGG | 0.304197 | 7.2:-20248927 | MS.gene41893:CDS |
| GATGAAAGAGTTGATCTTGT+TGG | 0.304543 | 7.2:-20249116 | MS.gene41893:CDS |
| TGTTGGAGCTTGTGTTATTA+GGG | 0.309712 | 7.2:-20248409 | MS.gene41893:CDS |
| GAGGTTGATCAGAAGAGAAT+TGG | 0.313244 | 7.2:-20248996 | MS.gene41893:CDS |
| GAGTTTGACTGTGGAGAAAA+TGG | 0.348977 | 7.2:-20248624 | MS.gene41893:CDS |
| GGTTGGTTGGGACGATGAAT+TGG | 0.349605 | 7.2:-20248891 | MS.gene41893:CDS |
| GATTTCAGAGAATCCATTCT+TGG | 0.361428 | 7.2:-20248962 | MS.gene41893:CDS |
| CGCTTCATTTGCATGCTTTG+AGG | 0.362675 | 7.2:-20249015 | MS.gene41893:CDS |
| GATTGTGGCGTTGGTTGGTT+GGG | 0.376171 | 7.2:-20248903 | MS.gene41893:CDS |
| GTTGGTTGGGACGATGAATT+GGG | 0.377034 | 7.2:-20248890 | MS.gene41893:CDS |
| AATGGTTGAGGTTGATCAAT+TGG | 0.380904 | 7.2:-20248606 | MS.gene41893:CDS |
| CTCAGGGAGGCTTATGAGAA+AGG | 0.394166 | 7.2:-20248476 | MS.gene41893:CDS |
| TACAGTATTGCTCTCTTCCT+TGG | 0.395133 | 7.2:+20248346 | None:intergenic |
| TGAGATTGAGGTTGTTAAAA+GGG | 0.413329 | 7.2:-20249071 | MS.gene41893:CDS |
| GAGGTAAAAGAGAAGGTGAT+TGG | 0.417799 | 7.2:-20248304 | MS.gene41893:CDS |
| ACAAGAAGCTAACAACTGTT+TGG | 0.418330 | 7.2:+20248376 | None:intergenic |
| AGGGTTTAGGGAAAAGTTGA+AGG | 0.426775 | 7.2:-20248753 | MS.gene41893:CDS |
| TTCTCATTAGCCTCCAAGAA+TGG | 0.428003 | 7.2:+20248275 | None:intergenic |
| CGAGTTACTCCTTAGGCATC+CGG | 0.438028 | 7.2:-20248543 | MS.gene41893:CDS |
| AGATTGTGGCGTTGGTTGGT+TGG | 0.438076 | 7.2:-20248904 | MS.gene41893:CDS |
| ATTTATTGGAAAAGCAAACT+TGG | 0.439418 | 7.2:+20248802 | None:intergenic |
| AGGTTGATCAGAAGAGAATT+GGG | 0.442727 | 7.2:-20248995 | MS.gene41893:CDS |
| ATTTCAGAGAATCCATTCTT+GGG | 0.446471 | 7.2:-20248961 | MS.gene41893:CDS |
| CGAACTTCATACACCGGATT+AGG | 0.447375 | 7.2:+20248440 | None:intergenic |
| TTGGGTGATTCCATTCTTGG+AGG | 0.459234 | 7.2:-20248285 | MS.gene41893:CDS |
| TTGGAGATTGTGGCGTTGGT+TGG | 0.470118 | 7.2:-20248908 | MS.gene41893:CDS |
| TGATTTGGAGATTGTGGCGT+TGG | 0.472947 | 7.2:-20248912 | MS.gene41893:CDS |
| ATATAGTGATGAGTTTAAGT+TGG | 0.478341 | 7.2:-20248936 | MS.gene41893:CDS |
| AGAGAGAGTACAGAGAGAAA+TGG | 0.480196 | 7.2:-20248841 | MS.gene41893:CDS |
| GTTGGTTGATTTGGAGATTG+TGG | 0.488895 | 7.2:-20248918 | MS.gene41893:CDS |
| AGGTAAAAGAGAAGGTGATT+GGG | 0.493014 | 7.2:-20248303 | MS.gene41893:CDS |
| CTCTCAATCTTAAACCCGGT+TGG | 0.493976 | 7.2:+20248776 | None:intergenic |
| AGGGTTGATTGAGCCTAATC+CGG | 0.502812 | 7.2:-20248453 | MS.gene41893:CDS |
| ATCACTATATCTCCCAAGAA+TGG | 0.505124 | 7.2:+20248949 | None:intergenic |
| GACTGTGGAGAAAATGGTTG+AGG | 0.510514 | 7.2:-20248618 | MS.gene41893:CDS |
| TGTAGTCTATGAAGTGGATG+GGG | 0.516415 | 7.2:-20248327 | MS.gene41893:CDS |
| TGAAGTTCGTAGAAATATGT+TGG | 0.520781 | 7.2:-20248426 | MS.gene41893:CDS |
| CTGTAGTCTATGAAGTGGAT+GGG | 0.521829 | 7.2:-20248328 | MS.gene41893:CDS |
| TTAAGTGTGGTGGGGTTCAG+AGG | 0.525566 | 7.2:-20248685 | MS.gene41893:CDS |
| GAATGGCGCTTGTTGAGGAA+TGG | 0.529453 | 7.2:-20248868 | MS.gene41893:CDS |
| CCCTCTCTCAATCTTAAACC+CGG | 0.530721 | 7.2:+20248772 | None:intergenic |
| ACTGTAGTCTATGAAGTGGA+TGG | 0.538565 | 7.2:-20248329 | MS.gene41893:CDS |
| TTAGGGAAAAGTTGAAGGGT+TGG | 0.539829 | 7.2:-20248748 | MS.gene41893:CDS |
| AGAGTTGATCTTGTTGGAAG+AGG | 0.541731 | 7.2:-20249110 | MS.gene41893:CDS |
| AGCTTCTTGTGATGAATCCA+AGG | 0.542578 | 7.2:-20248363 | MS.gene41893:CDS |
| GAGTTACTCCTTAGGCATCC+GGG | 0.542983 | 7.2:-20248542 | MS.gene41893:CDS |
| TTGGGACGATGAATTGGGAA+TGG | 0.561957 | 7.2:-20248885 | MS.gene41893:CDS |
| AAAATATCCCCGGATGCCTA+AGG | 0.562970 | 7.2:+20248534 | None:intergenic |
| GGGTTTAGGGAAAAGTTGAA+GGG | 0.563298 | 7.2:-20248752 | MS.gene41893:CDS |
| CAATACTGTAGTCTATGAAG+TGG | 0.563372 | 7.2:-20248333 | MS.gene41893:CDS |
| GTAGATATGTAAAATATCCC+CGG | 0.567673 | 7.2:+20248524 | None:intergenic |
| AAAAGTTGAAGGGTTGGCAA+AGG | 0.572365 | 7.2:-20248742 | MS.gene41893:CDS |
| TGTGAGACAACATGAGATTG+AGG | 0.579137 | 7.2:-20249083 | MS.gene41893:CDS |
| GGCGCTTGTTGAGGAATGGA+GGG | 0.582319 | 7.2:-20248864 | MS.gene41893:CDS |
| TTTCTACGAACTTCATACAC+CGG | 0.585037 | 7.2:+20248434 | None:intergenic |
| TGGCGCTTGTTGAGGAATGG+AGG | 0.587828 | 7.2:-20248865 | MS.gene41893:CDS |
| TTGCTTATGATGTCGGTGAA+TGG | 0.588157 | 7.2:-20249040 | MS.gene41893:CDS |
| ACCGGGTTTAAGATTGAGAG+AGG | 0.590903 | 7.2:-20248773 | MS.gene41893:CDS |
| ATGGATTCTCTGAAATCACT+AGG | 0.592317 | 7.2:+20248968 | None:intergenic |
| ATGTGCGCGAGTTACTCCTT+AGG | 0.602697 | 7.2:-20248550 | MS.gene41893:CDS |
| ATTGGGAATGGCGCTTGTTG+AGG | 0.606683 | 7.2:-20248873 | MS.gene41893:CDS |
| GGGAGGCTTATGAGAAAGGA+GGG | 0.607467 | 7.2:-20248472 | MS.gene41893:CDS |
| GGTTCAGAGGTATGAGAAGA+GGG | 0.608105 | 7.2:-20248672 | MS.gene41893:CDS |
| AGGGAGGCTTATGAGAAAGG+AGG | 0.624503 | 7.2:-20248473 | MS.gene41893:CDS |
| GAAGAAGTTGCTTATGATGT+CGG | 0.631934 | 7.2:-20249047 | MS.gene41893:CDS |
| CCGGGTTTAAGATTGAGAGA+GGG | 0.633078 | 7.2:-20248772 | MS.gene41893:CDS |
| GGGTTCAGAGGTATGAGAAG+AGG | 0.636662 | 7.2:-20248673 | MS.gene41893:CDS |
| TGAGCTGTTGAGTTTGACTG+TGG | 0.649610 | 7.2:-20248633 | MS.gene41893:CDS |
| GTAGTCTATGAAGTGGATGG+GGG | 0.673199 | 7.2:-20248326 | MS.gene41893:CDS |
| AGTTACTCCTTAGGCATCCG+GGG | 0.713199 | 7.2:-20248541 | MS.gene41893:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTACATATCTACAAA+AGG | - | chr7.2:20248865-20248884 | MS.gene41893:CDS | 15.0% |
| !!! | TTAACATTTTTTCTCTCATA+AGG | + | chr7.2:20248682-20248701 | None:intergenic | 20.0% |
| ! | ATATAGTGATGAGTTTAAGT+TGG | - | chr7.2:20248447-20248466 | MS.gene41893:CDS | 25.0% |
| ! | ATTTATTGGAAAAGCAAACT+TGG | + | chr7.2:20248584-20248603 | None:intergenic | 25.0% |
| !! | TTTCCAATAAATTTTCCAAC+CGG | - | chr7.2:20248592-20248611 | MS.gene41893:CDS | 25.0% |
| AAAAAATGTTAAGTGTGGTG+GGG | - | chr7.2:20248690-20248709 | MS.gene41893:CDS | 30.0% | |
| AGAAAAAATGTTAAGTGTGG+TGG | - | chr7.2:20248688-20248707 | MS.gene41893:CDS | 30.0% | |
| ATGAGATTGAGGTTGTTAAA+AGG | - | chr7.2:20248311-20248330 | MS.gene41893:CDS | 30.0% | |
| ATTTCAGAGAATCCATTCTT+GGG | - | chr7.2:20248422-20248441 | MS.gene41893:CDS | 30.0% | |
| GAAAAAATGTTAAGTGTGGT+GGG | - | chr7.2:20248689-20248708 | MS.gene41893:CDS | 30.0% | |
| GAGAGAAAAAATGTTAAGTG+TGG | - | chr7.2:20248685-20248704 | MS.gene41893:CDS | 30.0% | |
| GTAGATATGTAAAATATCCC+CGG | + | chr7.2:20248862-20248881 | None:intergenic | 30.0% | |
| TGAAGTTCGTAGAAATATGT+TGG | - | chr7.2:20248957-20248976 | MS.gene41893:CDS | 30.0% | |
| TGAGATTGAGGTTGTTAAAA+GGG | - | chr7.2:20248312-20248331 | MS.gene41893:CDS | 30.0% | |
| ! | TTCCAATAAATTTTCCAACC+GGG | - | chr7.2:20248593-20248612 | MS.gene41893:CDS | 30.0% |
| !! | TGAGTTTAAGTTGGTTGATT+TGG | - | chr7.2:20248456-20248475 | MS.gene41893:CDS | 30.0% |
| AACCCGGTTGGAAAATTTAT+TGG | + | chr7.2:20248598-20248617 | None:intergenic | 35.0% | |
| ACAAGAAGCTAACAACTGTT+TGG | + | chr7.2:20249010-20249029 | None:intergenic | 35.0% | |
| AGGTAAAAGAGAAGGTGATT+GGG | - | chr7.2:20249080-20249099 | MS.gene41893:CDS | 35.0% | |
| ATCACTATATCTCCCAAGAA+TGG | + | chr7.2:20248437-20248456 | None:intergenic | 35.0% | |
| CAATACTGTAGTCTATGAAG+TGG | - | chr7.2:20249050-20249069 | MS.gene41893:CDS | 35.0% | |
| GAAGAAGTTGCTTATGATGT+CGG | - | chr7.2:20248336-20248355 | MS.gene41893:CDS | 35.0% | |
| GATTTCAGAGAATCCATTCT+TGG | - | chr7.2:20248421-20248440 | MS.gene41893:CDS | 35.0% | |
| TAAGATTGAGAGAGGGTTTA+GGG | - | chr7.2:20248618-20248637 | MS.gene41893:CDS | 35.0% | |
| TTAAGATTGAGAGAGGGTTT+AGG | - | chr7.2:20248617-20248636 | MS.gene41893:CDS | 35.0% | |
| TTTCTACGAACTTCATACAC+CGG | + | chr7.2:20248952-20248971 | None:intergenic | 35.0% | |
| ! | AATGGTTGAGGTTGATCAAT+TGG | - | chr7.2:20248777-20248796 | MS.gene41893:CDS | 35.0% |
| ! | AGGTTGATCAGAAGAGAATT+GGG | - | chr7.2:20248388-20248407 | MS.gene41893:CDS | 35.0% |
| ! | ATGTTGGAGCTTGTGTTATT+AGG | - | chr7.2:20248973-20248992 | MS.gene41893:CDS | 35.0% |
| ! | TGTTGGAGCTTGTGTTATTA+GGG | - | chr7.2:20248974-20248993 | MS.gene41893:CDS | 35.0% |
| !! | ATCAATTGGCTCATTTTCGA+AGG | - | chr7.2:20248791-20248810 | MS.gene41893:CDS | 35.0% |
| !! | ATGCTCTAACTGTTTTTCTC+AGG | - | chr7.2:20248890-20248909 | MS.gene41893:CDS | 35.0% |
| !! | ATGGATTCTCTGAAATCACT+AGG | + | chr7.2:20248418-20248437 | None:intergenic | 35.0% |
| !! | TCAATTGGCTCATTTTCGAA+GGG | - | chr7.2:20248792-20248811 | MS.gene41893:CDS | 35.0% |
| !! | TGCTCTAACTGTTTTTCTCA+GGG | - | chr7.2:20248891-20248910 | MS.gene41893:CDS | 35.0% |
| ACTGTAGTCTATGAAGTGGA+TGG | - | chr7.2:20249054-20249073 | MS.gene41893:CDS | 40.0% | |
| AGCTTCTTGTGATGAATCCA+AGG | - | chr7.2:20249020-20249039 | MS.gene41893:CDS | 40.0% | |
| AGGGTTTAGGGAAAAGTTGA+AGG | - | chr7.2:20248630-20248649 | MS.gene41893:CDS | 40.0% | |
| CTGTAGTCTATGAAGTGGAT+GGG | - | chr7.2:20249055-20249074 | MS.gene41893:CDS | 40.0% | |
| GAGGTAAAAGAGAAGGTGAT+TGG | - | chr7.2:20249079-20249098 | MS.gene41893:CDS | 40.0% | |
| GAGTTTGACTGTGGAGAAAA+TGG | - | chr7.2:20248759-20248778 | MS.gene41893:CDS | 40.0% | |
| GGGTTTAGGGAAAAGTTGAA+GGG | - | chr7.2:20248631-20248650 | MS.gene41893:CDS | 40.0% | |
| TACAGTATTGCTCTCTTCCT+TGG | + | chr7.2:20249040-20249059 | None:intergenic | 40.0% | |
| TGATTGGGTGATTCCATTCT+TGG | - | chr7.2:20249095-20249114 | MS.gene41893:CDS | 40.0% | |
| TGTAGTCTATGAAGTGGATG+GGG | - | chr7.2:20249056-20249075 | MS.gene41893:CDS | 40.0% | |
| TGTGAGACAACATGAGATTG+AGG | - | chr7.2:20248300-20248319 | MS.gene41893:CDS | 40.0% | |
| TTAGGGAAAAGTTGAAGGGT+TGG | - | chr7.2:20248635-20248654 | MS.gene41893:CDS | 40.0% | |
| TTGCTTATGATGTCGGTGAA+TGG | - | chr7.2:20248343-20248362 | MS.gene41893:CDS | 40.0% | |
| ! | AAAAGTTGAAGGGTTGGCAA+AGG | - | chr7.2:20248641-20248660 | MS.gene41893:CDS | 40.0% |
| ! | AGAGAGAGTACAGAGAGAAA+TGG | - | chr7.2:20248542-20248561 | MS.gene41893:CDS | 40.0% |
| ! | AGAGTTGATCTTGTTGGAAG+AGG | - | chr7.2:20248273-20248292 | MS.gene41893:CDS | 40.0% |
| ! | GAGGTTGATCAGAAGAGAAT+TGG | - | chr7.2:20248387-20248406 | MS.gene41893:CDS | 40.0% |
| ! | TTCTCATTAGCCTCCAAGAA+TGG | + | chr7.2:20249111-20249130 | None:intergenic | 40.0% |
| !! | GTTGGTTGATTTGGAGATTG+TGG | - | chr7.2:20248465-20248484 | MS.gene41893:CDS | 40.0% |
| !! | TCTAACTGTTTTTCTCAGGG+AGG | - | chr7.2:20248894-20248913 | MS.gene41893:CDS | 40.0% |
| AAAATATCCCCGGATGCCTA+AGG | + | chr7.2:20248852-20248871 | None:intergenic | 45.0% | |
| CCCTCTCTCAATCTTAAACC+CGG | + | chr7.2:20248614-20248633 | None:intergenic | 45.0% | |
| CGAACTTCATACACCGGATT+AGG | + | chr7.2:20248946-20248965 | None:intergenic | 45.0% | |
| CGCTTCATTTGCATGCTTTG+AGG | - | chr7.2:20248368-20248387 | MS.gene41893:CDS | 45.0% | |
| CTCTCAATCTTAAACCCGGT+TGG | + | chr7.2:20248610-20248629 | None:intergenic | 45.0% | |
| GACTGTGGAGAAAATGGTTG+AGG | - | chr7.2:20248765-20248784 | MS.gene41893:CDS | 45.0% | |
| GTAGTCTATGAAGTGGATGG+GGG | - | chr7.2:20249057-20249076 | MS.gene41893:CDS | 45.0% | |
| GTTGGTTGGGACGATGAATT+GGG | - | chr7.2:20248493-20248512 | MS.gene41893:CDS | 45.0% | |
| TGAGCTGTTGAGTTTGACTG+TGG | - | chr7.2:20248750-20248769 | MS.gene41893:CDS | 45.0% | |
| TTGGGACGATGAATTGGGAA+TGG | - | chr7.2:20248498-20248517 | MS.gene41893:CDS | 45.0% | |
| TTGGGTGATTCCATTCTTGG+AGG | - | chr7.2:20249098-20249117 | MS.gene41893:CDS | 45.0% | |
| ! | ACCGGGTTTAAGATTGAGAG+AGG | - | chr7.2:20248610-20248629 | MS.gene41893:CDS | 45.0% |
| ! | AGGGTTGATTGAGCCTAATC+CGG | - | chr7.2:20248930-20248949 | MS.gene41893:CDS | 45.0% |
| ! | CCGGGTTTAAGATTGAGAGA+GGG | - | chr7.2:20248611-20248630 | MS.gene41893:CDS | 45.0% |
| ! | GGTTCAGAGGTATGAGAAGA+GGG | - | chr7.2:20248711-20248730 | MS.gene41893:CDS | 45.0% |
| ! | TGATTTGGAGATTGTGGCGT+TGG | - | chr7.2:20248471-20248490 | MS.gene41893:CDS | 45.0% |
| AGGGAGGCTTATGAGAAAGG+AGG | - | chr7.2:20248910-20248929 | MS.gene41893:CDS | 50.0% | |
| AGTTACTCCTTAGGCATCCG+GGG | - | chr7.2:20248842-20248861 | MS.gene41893:CDS | 50.0% | |
| ATGTGCGCGAGTTACTCCTT+AGG | - | chr7.2:20248833-20248852 | MS.gene41893:CDS | 50.0% | |
| CGAGTTACTCCTTAGGCATC+CGG | - | chr7.2:20248840-20248859 | MS.gene41893:CDS | 50.0% | |
| CTCAGGGAGGCTTATGAGAA+AGG | - | chr7.2:20248907-20248926 | MS.gene41893:CDS | 50.0% | |
| GAGTTACTCCTTAGGCATCC+GGG | - | chr7.2:20248841-20248860 | MS.gene41893:CDS | 50.0% | |
| GATGGGGGAGGTAAAAGAGA+AGG | - | chr7.2:20249072-20249091 | MS.gene41893:CDS | 50.0% | |
| GGGAGGCTTATGAGAAAGGA+GGG | - | chr7.2:20248911-20248930 | MS.gene41893:CDS | 50.0% | |
| ! | ATTGGGAATGGCGCTTGTTG+AGG | - | chr7.2:20248510-20248529 | MS.gene41893:CDS | 50.0% |
| ! | GAATGGCGCTTGTTGAGGAA+TGG | - | chr7.2:20248515-20248534 | MS.gene41893:CDS | 50.0% |
| ! | GGGTTCAGAGGTATGAGAAG+AGG | - | chr7.2:20248710-20248729 | MS.gene41893:CDS | 50.0% |
| ! | GGTTGGTTGGGACGATGAAT+TGG | - | chr7.2:20248492-20248511 | MS.gene41893:CDS | 50.0% |
| ! | TTAAGTGTGGTGGGGTTCAG+AGG | - | chr7.2:20248698-20248717 | MS.gene41893:CDS | 50.0% |
| !! | AGATTGTGGCGTTGGTTGGT+TGG | - | chr7.2:20248479-20248498 | MS.gene41893:CDS | 50.0% |
| !! | GATTGTGGCGTTGGTTGGTT+GGG | - | chr7.2:20248480-20248499 | MS.gene41893:CDS | 50.0% |
| !! | TTGGAGATTGTGGCGTTGGT+TGG | - | chr7.2:20248475-20248494 | MS.gene41893:CDS | 50.0% |
| GTCTATGAAGTGGATGGGGG+AGG | - | chr7.2:20249060-20249079 | MS.gene41893:CDS | 55.0% | |
| ! | GGCGCTTGTTGAGGAATGGA+GGG | - | chr7.2:20248519-20248538 | MS.gene41893:CDS | 55.0% |
| ! | TGGCGCTTGTTGAGGAATGG+AGG | - | chr7.2:20248518-20248537 | MS.gene41893:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 20248268 | 20249137 | 20248268 | ID=MS.gene41893 |
| chr7.2 | mRNA | 20248268 | 20249137 | 20248268 | ID=MS.gene41893.t1;Parent=MS.gene41893 |
| chr7.2 | exon | 20248268 | 20249137 | 20248268 | ID=MS.gene41893.t1.exon1;Parent=MS.gene41893.t1 |
| chr7.2 | CDS | 20248268 | 20249137 | 20248268 | ID=cds.MS.gene41893.t1;Parent=MS.gene41893.t1 |
| Gene Sequence |
| Protein sequence |
