Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055711.t1 | XP_024625164.1 | 97.2 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 1.50E-154 | 555.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055711.t1 | Q689D6 | 43.6 | 243 | 125 | 3 | 18 | 248 | 148 | 390 | 1.4e-47 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055711.t1 | G7L4S6 | 97.2 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 1.1e-154 | 555.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053085 | MS.gene055711 | 0.80487 | 1.76E-49 | -1.69E-46 |
| MS.gene055711 | MS.gene056498 | 0.805968 | 1.03E-49 | -1.69E-46 |
| MS.gene055711 | MS.gene057060 | 0.827437 | 1.56E-54 | -1.69E-46 |
| MS.gene055711 | MS.gene057200 | 0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene055711 | MS.gene060918 | 0.812331 | 4.47E-51 | -1.69E-46 |
| MS.gene055711 | MS.gene064944 | 0.809331 | 1.99E-50 | -1.69E-46 |
| MS.gene055711 | MS.gene068038 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene055711 | MS.gene068083 | 0.858399 | 8.46E-63 | -1.69E-46 |
| MS.gene055711 | MS.gene068116 | 0.800293 | 1.54E-48 | -1.69E-46 |
| MS.gene055711 | MS.gene25152 | 0.820119 | 8.12E-53 | -1.69E-46 |
| MS.gene055711 | MS.gene27482 | 0.821453 | 4.01E-53 | -1.69E-46 |
| MS.gene055711 | MS.gene29136 | 0.816957 | 4.23E-52 | -1.69E-46 |
| MS.gene055711 | MS.gene31666 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene055711 | MS.gene41893 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene055711 | MS.gene44603 | 0.837016 | 6.67E-57 | -1.69E-46 |
| MS.gene055711 | MS.gene53586 | 0.82135 | 4.23E-53 | -1.69E-46 |
| MS.gene055711 | MS.gene64249 | 0.829709 | 4.42E-55 | -1.69E-46 |
| MS.gene055711 | MS.gene72268 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene055711 | MS.gene73879 | 0.80798 | 3.88E-50 | -1.69E-46 |
| MS.gene055711 | MS.gene82548 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene055711 | MS.gene88243 | 0.805528 | 1.28E-49 | -1.69E-46 |
| MS.gene055711 | MS.gene98087 | 0.806796 | 6.91E-50 | -1.69E-46 |
| MS.gene055711 | MS.gene98088 | 0.80518 | 1.51E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05082 | MS.gene055711 | PPI |
| MS.gene055711 | MS.gene008389 | PPI |
| MS.gene049632 | MS.gene055711 | PPI |
| MS.gene055711 | MS.gene55679 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055711.t1 | MTR_7g088530 | 97.232 | 289 | 8 | 0 | 1 | 289 | 129 | 417 | 0.0 | 566 |
| MS.gene055711.t1 | MTR_3g063230 | 46.025 | 239 | 117 | 4 | 19 | 245 | 153 | 391 | 3.26e-63 | 205 |
| MS.gene055711.t1 | MTR_6g033595 | 45.455 | 242 | 120 | 4 | 19 | 248 | 149 | 390 | 4.49e-59 | 195 |
| MS.gene055711.t1 | MTR_2g067960 | 42.562 | 242 | 127 | 4 | 19 | 248 | 114 | 355 | 1.02e-51 | 175 |
| MS.gene055711.t1 | MTR_3g063230 | 41.841 | 239 | 103 | 5 | 19 | 245 | 153 | 367 | 1.75e-51 | 174 |
| MS.gene055711.t1 | MTR_3g105530 | 37.363 | 273 | 146 | 8 | 5 | 260 | 121 | 385 | 4.32e-43 | 152 |
| MS.gene055711.t1 | MTR_8g089370 | 34.413 | 247 | 152 | 4 | 8 | 246 | 130 | 374 | 2.63e-36 | 134 |
| MS.gene055711.t1 | MTR_7g117270 | 32.982 | 285 | 182 | 4 | 3 | 278 | 170 | 454 | 8.02e-35 | 132 |
| MS.gene055711.t1 | MTR_1g072550 | 31.086 | 267 | 175 | 3 | 8 | 268 | 128 | 391 | 2.18e-34 | 129 |
| MS.gene055711.t1 | MTR_1g032040 | 32.510 | 243 | 156 | 2 | 8 | 245 | 128 | 367 | 2.44e-34 | 128 |
| MS.gene055711.t1 | MTR_1g032380 | 32.510 | 243 | 156 | 2 | 8 | 245 | 128 | 367 | 2.44e-34 | 128 |
| MS.gene055711.t1 | MTR_7g107280 | 30.204 | 245 | 162 | 3 | 8 | 243 | 122 | 366 | 4.39e-34 | 128 |
| MS.gene055711.t1 | MTR_6g043850 | 31.858 | 226 | 146 | 3 | 18 | 240 | 131 | 351 | 4.25e-32 | 125 |
| MS.gene055711.t1 | MTR_0153s0070 | 36.449 | 214 | 113 | 7 | 5 | 201 | 128 | 335 | 3.29e-30 | 116 |
| MS.gene055711.t1 | MTR_1g019170 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 7.71e-29 | 114 |
| MS.gene055711.t1 | MTR_3g030020 | 30.196 | 255 | 160 | 3 | 1 | 249 | 58 | 300 | 7.92e-29 | 113 |
| MS.gene055711.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 1.06e-28 | 115 |
| MS.gene055711.t1 | MTR_3g029990 | 30.588 | 255 | 159 | 3 | 1 | 249 | 101 | 343 | 1.20e-28 | 115 |
| MS.gene055711.t1 | MTR_1g098960 | 30.962 | 239 | 147 | 3 | 1 | 233 | 103 | 329 | 1.05e-27 | 111 |
| MS.gene055711.t1 | MTR_0153s0070 | 32.222 | 270 | 124 | 9 | 5 | 256 | 98 | 326 | 2.16e-27 | 109 |
| MS.gene055711.t1 | MTR_4g053720 | 30.638 | 235 | 142 | 4 | 13 | 233 | 120 | 347 | 6.28e-27 | 108 |
| MS.gene055711.t1 | MTR_3g083350 | 31.278 | 227 | 147 | 6 | 19 | 240 | 168 | 390 | 1.20e-23 | 100 |
| MS.gene055711.t1 | MTR_3g074730 | 29.339 | 242 | 147 | 7 | 1 | 228 | 140 | 371 | 5.90e-21 | 92.0 |
| MS.gene055711.t1 | MTR_7g018630 | 28.782 | 271 | 167 | 7 | 8 | 262 | 142 | 402 | 6.30e-20 | 89.4 |
| MS.gene055711.t1 | MTR_3g448960 | 25.833 | 240 | 133 | 6 | 1 | 233 | 103 | 304 | 1.08e-14 | 74.3 |
| MS.gene055711.t1 | MTR_8g102038 | 28.488 | 172 | 102 | 4 | 13 | 170 | 74 | 238 | 4.52e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055711.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 66 | 352 | 8.61e-123 | 355 |
| MS.gene055711.t1 | AT5G45790 | 63.542 | 288 | 99 | 3 | 1 | 283 | 151 | 437 | 4.99e-122 | 356 |
| MS.gene055711.t1 | AT1G06440 | 47.479 | 238 | 113 | 4 | 19 | 244 | 137 | 374 | 1.92e-63 | 204 |
| MS.gene055711.t1 | AT4G33495 | 44.033 | 243 | 124 | 4 | 18 | 248 | 148 | 390 | 1.21e-57 | 190 |
| MS.gene055711.t1 | AT5G48040 | 38.866 | 247 | 135 | 5 | 8 | 246 | 132 | 370 | 1.64e-42 | 151 |
| MS.gene055711.t1 | AT3G58520 | 32.941 | 255 | 143 | 5 | 8 | 243 | 113 | 358 | 1.14e-39 | 143 |
| MS.gene055711.t1 | AT3G58520 | 32.941 | 255 | 143 | 5 | 8 | 243 | 125 | 370 | 1.49e-39 | 143 |
| MS.gene055711.t1 | AT5G21970 | 34.553 | 246 | 146 | 4 | 18 | 253 | 155 | 395 | 1.50e-36 | 135 |
| MS.gene055711.t1 | AT5G21970 | 34.553 | 246 | 146 | 4 | 18 | 253 | 155 | 395 | 1.50e-36 | 135 |
| MS.gene055711.t1 | AT4G01037 | 35.060 | 251 | 153 | 5 | 3 | 244 | 162 | 411 | 2.31e-36 | 136 |
| MS.gene055711.t1 | AT1G79120 | 34.667 | 225 | 133 | 3 | 19 | 229 | 160 | 384 | 8.77e-34 | 127 |
| MS.gene055711.t1 | AT1G79120 | 34.667 | 225 | 133 | 3 | 19 | 229 | 160 | 384 | 8.77e-34 | 127 |
| MS.gene055711.t1 | AT1G71850 | 31.111 | 270 | 167 | 5 | 19 | 277 | 134 | 395 | 6.46e-33 | 126 |
| MS.gene055711.t1 | AT2G31290 | 32.549 | 255 | 142 | 4 | 1 | 243 | 108 | 344 | 2.33e-31 | 121 |
| MS.gene055711.t1 | AT2G31290 | 32.549 | 255 | 142 | 4 | 1 | 243 | 108 | 344 | 2.33e-31 | 121 |
| MS.gene055711.t1 | AT4G24320 | 31.818 | 264 | 164 | 5 | 19 | 270 | 127 | 386 | 2.03e-28 | 112 |
| MS.gene055711.t1 | AT3G63090 | 29.412 | 238 | 160 | 2 | 8 | 240 | 131 | 365 | 4.26e-28 | 112 |
| MS.gene055711.t1 | AT5G62990 | 31.429 | 245 | 153 | 6 | 1 | 240 | 158 | 392 | 2.81e-24 | 102 |
| MS.gene055711.t1 | AT2G39120 | 31.783 | 258 | 157 | 7 | 3 | 247 | 117 | 368 | 9.84e-24 | 99.8 |
| MS.gene055711.t1 | AT4G08940 | 26.923 | 234 | 158 | 5 | 1 | 228 | 148 | 374 | 6.27e-16 | 77.8 |
Find 80 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCGGTTGGAAAATTTAT+TGG | 0.170400 | 7.4:+19943058 | None:intergenic |
| ATGTTGGAGCTTGTGTTATT+AGG | 0.181468 | 7.4:-19942680 | MS.gene055711:CDS |
| TAAGATTGAGAGAGGGTTTA+GGG | 0.240031 | 7.4:-19943035 | MS.gene055711:CDS |
| GGTTGGTTGGGACGATGAAT+TGG | 0.282172 | 7.4:-19943161 | MS.gene055711:CDS |
| ATGAGGTTGAGGTTGTTAAA+AGG | 0.287196 | 7.4:-19943342 | MS.gene055711:CDS |
| TGATTGGGTGATTCCGTTCT+TGG | 0.292868 | 7.4:-19942558 | MS.gene055711:CDS |
| TTAAGATTGAGAGAGGGTTT+AGG | 0.303009 | 7.4:-19943036 | MS.gene055711:CDS |
| TGAGTTTAAGTTGGTTGATT+TGG | 0.304197 | 7.4:-19943197 | MS.gene055711:CDS |
| GATTGTGGGGTTGGTTGGTT+GGG | 0.307067 | 7.4:-19943173 | MS.gene055711:CDS |
| TGTTGGAGCTTGTGTTATTA+GGG | 0.309712 | 7.4:-19942679 | MS.gene055711:CDS |
| GAGGTTGATCAGAAGAGAAT+TGG | 0.322170 | 7.4:-19943266 | MS.gene055711:CDS |
| TGATTTGGAGATTGTGGGGT+TGG | 0.345503 | 7.4:-19943182 | MS.gene055711:CDS |
| GAGTTTGACTGTGGAGAAAA+TGG | 0.348977 | 7.4:-19942894 | MS.gene055711:CDS |
| GATTTCAGAGAATCCATTCT+TGG | 0.361428 | 7.4:-19943232 | MS.gene055711:CDS |
| TTGGAGATTGTGGGGTTGGT+TGG | 0.361910 | 7.4:-19943178 | MS.gene055711:CDS |
| AGATTGTGGGGTTGGTTGGT+TGG | 0.370838 | 7.4:-19943174 | MS.gene055711:CDS |
| GTTGGTTGGGACGATGAATT+GGG | 0.377034 | 7.4:-19943160 | MS.gene055711:CDS |
| AATGGTTGAGGTTGATCAAT+TGG | 0.380904 | 7.4:-19942876 | MS.gene055711:CDS |
| CTCAGGGAGGCTTATGAGAA+AGG | 0.394166 | 7.4:-19942746 | MS.gene055711:CDS |
| TACAGCATTGCTCTCTTCCT+TGG | 0.400352 | 7.4:+19942616 | None:intergenic |
| GTTGGTTGATTTGGAGATTG+TGG | 0.410015 | 7.4:-19943188 | MS.gene055711:CDS |
| GATGAAGGAGTTGATATTGT+TGG | 0.411641 | 7.4:-19943386 | MS.gene055711:CDS |
| GAGGTAAAAGAGAAGGTGAT+TGG | 0.417799 | 7.4:-19942574 | MS.gene055711:CDS |
| ACAAGAAGCTAACAACTGTT+TGG | 0.418330 | 7.4:+19942646 | None:intergenic |
| AGGGTTTAGGGAAAAGTTGA+AGG | 0.426775 | 7.4:-19943023 | MS.gene055711:CDS |
| AGAGAGAGTACAAAGAGAAA+TGG | 0.428706 | 7.4:-19943111 | MS.gene055711:CDS |
| CGAGTTACTCCTTAGGCATC+CGG | 0.438028 | 7.4:-19942813 | MS.gene055711:CDS |
| ATTTATTGGAAAAGCAAACT+TGG | 0.439418 | 7.4:+19943072 | None:intergenic |
| ATTTCAGAGAATCCATTCTT+GGG | 0.446471 | 7.4:-19943231 | MS.gene055711:CDS |
| TTGGTTGATTTGGAGATTGT+GGG | 0.446962 | 7.4:-19943187 | MS.gene055711:CDS |
| CGAACTTCATACACCGGATT+AGG | 0.447375 | 7.4:+19942710 | None:intergenic |
| TGAGGTTGAGGTTGTTAAAA+GGG | 0.448306 | 7.4:-19943341 | MS.gene055711:CDS |
| AGGTTGATCAGAAGAGAATT+GGG | 0.469262 | 7.4:-19943265 | MS.gene055711:CDS |
| ATATAGTGATGAGTTTAAGT+TGG | 0.478341 | 7.4:-19943206 | MS.gene055711:CDS |
| AGGTAAAAGAGAAGGTGATT+GGG | 0.493014 | 7.4:-19942573 | MS.gene055711:CDS |
| CTCTCAATCTTAAACCCGGT+TGG | 0.493976 | 7.4:+19943046 | None:intergenic |
| TTGGGTGATTCCGTTCTTGG+AGG | 0.495605 | 7.4:-19942555 | MS.gene055711:CDS |
| AGGGTTGATTGAGCCTAATC+CGG | 0.502812 | 7.4:-19942723 | MS.gene055711:CDS |
| ATCACTATATCTCCCAAGAA+TGG | 0.505124 | 7.4:+19943219 | None:intergenic |
| GACTGTGGAGAAAATGGTTG+AGG | 0.510514 | 7.4:-19942888 | MS.gene055711:CDS |
| GGAGTTGATATTGTTGGAAG+AGG | 0.511941 | 7.4:-19943380 | MS.gene055711:CDS |
| TGAAGTTCGTAGAAATATGT+TGG | 0.520781 | 7.4:-19942696 | MS.gene055711:CDS |
| CGCTTCATTTGCATGCCTTG+AGG | 0.523963 | 7.4:-19943285 | MS.gene055711:CDS |
| TTAAGTGTGGTGGGGTTCAG+AGG | 0.525566 | 7.4:-19942955 | MS.gene055711:CDS |
| GAATGGCGCTTGTTGAGGAA+TGG | 0.529453 | 7.4:-19943138 | MS.gene055711:CDS |
| CCCTCTCTCAATCTTAAACC+CGG | 0.530721 | 7.4:+19943042 | None:intergenic |
| TTAGGGAAAAGTTGAAGGGT+TGG | 0.539829 | 7.4:-19943018 | MS.gene055711:CDS |
| AGCTTCTTGTGATGAATCCA+AGG | 0.542578 | 7.4:-19942633 | MS.gene055711:CDS |
| GAGTTACTCCTTAGGCATCC+GGG | 0.542983 | 7.4:-19942812 | MS.gene055711:CDS |
| TTCTCATTAGCCTCCAAGAA+CGG | 0.559860 | 7.4:+19942545 | None:intergenic |
| TTGGGACGATGAATTGGGAA+TGG | 0.561957 | 7.4:-19943155 | MS.gene055711:CDS |
| AAAATATCCCCGGATGCCTA+AGG | 0.562970 | 7.4:+19942804 | None:intergenic |
| GGGTTTAGGGAAAAGTTGAA+GGG | 0.563298 | 7.4:-19943022 | MS.gene055711:CDS |
| GTAGATATGTAAAATATCCC+CGG | 0.567673 | 7.4:+19942794 | None:intergenic |
| AAAAGTTGAAGGGTTGGCAA+AGG | 0.572365 | 7.4:-19943012 | MS.gene055711:CDS |
| TTCTCTTCTGATCAACCTCA+AGG | 0.577966 | 7.4:+19943270 | None:intergenic |
| TGGTTGATTTGGAGATTGTG+GGG | 0.581525 | 7.4:-19943186 | MS.gene055711:CDS |
| GGCGCTTGTTGAGGAATGGA+GGG | 0.582319 | 7.4:-19943134 | MS.gene055711:CDS |
| TTTCTACGAACTTCATACAC+CGG | 0.585037 | 7.4:+19942704 | None:intergenic |
| TGGCGCTTGTTGAGGAATGG+AGG | 0.587828 | 7.4:-19943135 | MS.gene055711:CDS |
| TTGCTTATGATGTCGGTGAA+TGG | 0.588157 | 7.4:-19943310 | MS.gene055711:CDS |
| CTGTAGTCTATGAAGTGGAT+GGG | 0.589627 | 7.4:-19942598 | MS.gene055711:CDS |
| ACCGGGTTTAAGATTGAGAG+AGG | 0.590903 | 7.4:-19943043 | MS.gene055711:CDS |
| ATGGATTCTCTGAAATCACT+AGG | 0.592317 | 7.4:+19943238 | None:intergenic |
| ATGTGCGCGAGTTACTCCTT+AGG | 0.602697 | 7.4:-19942820 | MS.gene055711:CDS |
| ATTGGGAATGGCGCTTGTTG+AGG | 0.606683 | 7.4:-19943143 | MS.gene055711:CDS |
| GGGAGGCTTATGAGAAAGGA+GGG | 0.607467 | 7.4:-19942742 | MS.gene055711:CDS |
| GGTTCAGAGGTATGAGAAGA+GGG | 0.608105 | 7.4:-19942942 | MS.gene055711:CDS |
| GCTGTAGTCTATGAAGTGGA+TGG | 0.611508 | 7.4:-19942599 | MS.gene055711:CDS |
| AGGGAGGCTTATGAGAAAGG+AGG | 0.624503 | 7.4:-19942743 | MS.gene055711:CDS |
| TGTGAGACAACATGAGGTTG+AGG | 0.624520 | 7.4:-19943353 | MS.gene055711:CDS |
| CAATGCTGTAGTCTATGAAG+TGG | 0.626112 | 7.4:-19942603 | MS.gene055711:CDS |
| TGTAGTCTATGAAGTGGATG+GGG | 0.628618 | 7.4:-19942597 | MS.gene055711:CDS |
| GAAGAAGTTGCTTATGATGT+CGG | 0.631934 | 7.4:-19943317 | MS.gene055711:CDS |
| CCGGGTTTAAGATTGAGAGA+GGG | 0.633078 | 7.4:-19943042 | MS.gene055711:CDS |
| GGGTTCAGAGGTATGAGAAG+AGG | 0.636662 | 7.4:-19942943 | MS.gene055711:CDS |
| TGAGCTGTTGAGTTTGACTG+TGG | 0.649610 | 7.4:-19942903 | MS.gene055711:CDS |
| GTAGTCTATGAAGTGGATGG+GGG | 0.660117 | 7.4:-19942596 | MS.gene055711:CDS |
| AGTTACTCCTTAGGCATCCG+GGG | 0.713199 | 7.4:-19942811 | MS.gene055711:CDS |
| GGTTGTTGTGAGACAACATG+AGG | 0.740042 | 7.4:-19943359 | MS.gene055711:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTACATATCTACAAA+AGG | - | chr7.4:19943135-19943154 | MS.gene055711:CDS | 15.0% |
| !!! | TTAACATTTTTTCTCTCATA+AGG | + | chr7.4:19942952-19942971 | None:intergenic | 20.0% |
| ! | ATATAGTGATGAGTTTAAGT+TGG | - | chr7.4:19942717-19942736 | MS.gene055711:CDS | 25.0% |
| ! | ATTTATTGGAAAAGCAAACT+TGG | + | chr7.4:19942854-19942873 | None:intergenic | 25.0% |
| !! | TTTCCAATAAATTTTCCAAC+CGG | - | chr7.4:19942862-19942881 | MS.gene055711:CDS | 25.0% |
| AAAAAATGTTAAGTGTGGTG+GGG | - | chr7.4:19942960-19942979 | MS.gene055711:CDS | 30.0% | |
| AGAAAAAATGTTAAGTGTGG+TGG | - | chr7.4:19942958-19942977 | MS.gene055711:CDS | 30.0% | |
| ATTTCAGAGAATCCATTCTT+GGG | - | chr7.4:19942692-19942711 | MS.gene055711:CDS | 30.0% | |
| GAAAAAATGTTAAGTGTGGT+GGG | - | chr7.4:19942959-19942978 | MS.gene055711:CDS | 30.0% | |
| GAGAGAAAAAATGTTAAGTG+TGG | - | chr7.4:19942955-19942974 | MS.gene055711:CDS | 30.0% | |
| GTAGATATGTAAAATATCCC+CGG | + | chr7.4:19943132-19943151 | None:intergenic | 30.0% | |
| TGAAGTTCGTAGAAATATGT+TGG | - | chr7.4:19943227-19943246 | MS.gene055711:CDS | 30.0% | |
| ! | TTCCAATAAATTTTCCAACC+GGG | - | chr7.4:19942863-19942882 | MS.gene055711:CDS | 30.0% |
| !! | TGAGTTTAAGTTGGTTGATT+TGG | - | chr7.4:19942726-19942745 | MS.gene055711:CDS | 30.0% |
| AACCCGGTTGGAAAATTTAT+TGG | + | chr7.4:19942868-19942887 | None:intergenic | 35.0% | |
| ACAAGAAGCTAACAACTGTT+TGG | + | chr7.4:19943280-19943299 | None:intergenic | 35.0% | |
| AGGTAAAAGAGAAGGTGATT+GGG | - | chr7.4:19943350-19943369 | MS.gene055711:CDS | 35.0% | |
| ATCACTATATCTCCCAAGAA+TGG | + | chr7.4:19942707-19942726 | None:intergenic | 35.0% | |
| ATGAGGTTGAGGTTGTTAAA+AGG | - | chr7.4:19942581-19942600 | MS.gene055711:CDS | 35.0% | |
| GAAGAAGTTGCTTATGATGT+CGG | - | chr7.4:19942606-19942625 | MS.gene055711:CDS | 35.0% | |
| GATTTCAGAGAATCCATTCT+TGG | - | chr7.4:19942691-19942710 | MS.gene055711:CDS | 35.0% | |
| TAAGATTGAGAGAGGGTTTA+GGG | - | chr7.4:19942888-19942907 | MS.gene055711:CDS | 35.0% | |
| TGAGGTTGAGGTTGTTAAAA+GGG | - | chr7.4:19942582-19942601 | MS.gene055711:CDS | 35.0% | |
| TTAAGATTGAGAGAGGGTTT+AGG | - | chr7.4:19942887-19942906 | MS.gene055711:CDS | 35.0% | |
| TTTCTACGAACTTCATACAC+CGG | + | chr7.4:19943222-19943241 | None:intergenic | 35.0% | |
| ! | AATGGTTGAGGTTGATCAAT+TGG | - | chr7.4:19943047-19943066 | MS.gene055711:CDS | 35.0% |
| ! | AGAGAGAGTACAAAGAGAAA+TGG | - | chr7.4:19942812-19942831 | MS.gene055711:CDS | 35.0% |
| ! | AGGTTGATCAGAAGAGAATT+GGG | - | chr7.4:19942658-19942677 | MS.gene055711:CDS | 35.0% |
| ! | ATGTTGGAGCTTGTGTTATT+AGG | - | chr7.4:19943243-19943262 | MS.gene055711:CDS | 35.0% |
| ! | TGTTGGAGCTTGTGTTATTA+GGG | - | chr7.4:19943244-19943263 | MS.gene055711:CDS | 35.0% |
| !! | ATCAATTGGCTCATTTTCGA+AGG | - | chr7.4:19943061-19943080 | MS.gene055711:CDS | 35.0% |
| !! | ATGCTCTAACTGTTTTTCTC+AGG | - | chr7.4:19943160-19943179 | MS.gene055711:CDS | 35.0% |
| !! | ATGGATTCTCTGAAATCACT+AGG | + | chr7.4:19942688-19942707 | None:intergenic | 35.0% |
| !! | TCAATTGGCTCATTTTCGAA+GGG | - | chr7.4:19943062-19943081 | MS.gene055711:CDS | 35.0% |
| !! | TGCTCTAACTGTTTTTCTCA+GGG | - | chr7.4:19943161-19943180 | MS.gene055711:CDS | 35.0% |
| !! | TTGGTTGATTTGGAGATTGT+GGG | - | chr7.4:19942736-19942755 | MS.gene055711:CDS | 35.0% |
| AGCTTCTTGTGATGAATCCA+AGG | - | chr7.4:19943290-19943309 | MS.gene055711:CDS | 40.0% | |
| AGGGTTTAGGGAAAAGTTGA+AGG | - | chr7.4:19942900-19942919 | MS.gene055711:CDS | 40.0% | |
| CAATGCTGTAGTCTATGAAG+TGG | - | chr7.4:19943320-19943339 | MS.gene055711:CDS | 40.0% | |
| CTGTAGTCTATGAAGTGGAT+GGG | - | chr7.4:19943325-19943344 | MS.gene055711:CDS | 40.0% | |
| GAGGTAAAAGAGAAGGTGAT+TGG | - | chr7.4:19943349-19943368 | MS.gene055711:CDS | 40.0% | |
| GAGTTTGACTGTGGAGAAAA+TGG | - | chr7.4:19943029-19943048 | MS.gene055711:CDS | 40.0% | |
| GGGTTTAGGGAAAAGTTGAA+GGG | - | chr7.4:19942901-19942920 | MS.gene055711:CDS | 40.0% | |
| TGTAGTCTATGAAGTGGATG+GGG | - | chr7.4:19943326-19943345 | MS.gene055711:CDS | 40.0% | |
| TTAGGGAAAAGTTGAAGGGT+TGG | - | chr7.4:19942905-19942924 | MS.gene055711:CDS | 40.0% | |
| TTCTCTTCTGATCAACCTCA+AGG | + | chr7.4:19942656-19942675 | None:intergenic | 40.0% | |
| TTGCTTATGATGTCGGTGAA+TGG | - | chr7.4:19942613-19942632 | MS.gene055711:CDS | 40.0% | |
| ! | AAAAGTTGAAGGGTTGGCAA+AGG | - | chr7.4:19942911-19942930 | MS.gene055711:CDS | 40.0% |
| ! | GAGGTTGATCAGAAGAGAAT+TGG | - | chr7.4:19942657-19942676 | MS.gene055711:CDS | 40.0% |
| ! | TTCTCATTAGCCTCCAAGAA+CGG | + | chr7.4:19943381-19943400 | None:intergenic | 40.0% |
| !! | GGAGTTGATATTGTTGGAAG+AGG | - | chr7.4:19942543-19942562 | MS.gene055711:CDS | 40.0% |
| !! | GTTGGTTGATTTGGAGATTG+TGG | - | chr7.4:19942735-19942754 | MS.gene055711:CDS | 40.0% |
| !! | TCTAACTGTTTTTCTCAGGG+AGG | - | chr7.4:19943164-19943183 | MS.gene055711:CDS | 40.0% |
| !! | TGGTTGATTTGGAGATTGTG+GGG | - | chr7.4:19942737-19942756 | MS.gene055711:CDS | 40.0% |
| AAAATATCCCCGGATGCCTA+AGG | + | chr7.4:19943122-19943141 | None:intergenic | 45.0% | |
| CCCTCTCTCAATCTTAAACC+CGG | + | chr7.4:19942884-19942903 | None:intergenic | 45.0% | |
| CGAACTTCATACACCGGATT+AGG | + | chr7.4:19943216-19943235 | None:intergenic | 45.0% | |
| CTCTCAATCTTAAACCCGGT+TGG | + | chr7.4:19942880-19942899 | None:intergenic | 45.0% | |
| GACTGTGGAGAAAATGGTTG+AGG | - | chr7.4:19943035-19943054 | MS.gene055711:CDS | 45.0% | |
| GCTGTAGTCTATGAAGTGGA+TGG | - | chr7.4:19943324-19943343 | MS.gene055711:CDS | 45.0% | |
| GGTTGTTGTGAGACAACATG+AGG | - | chr7.4:19942564-19942583 | MS.gene055711:CDS | 45.0% | |
| GTAGTCTATGAAGTGGATGG+GGG | - | chr7.4:19943327-19943346 | MS.gene055711:CDS | 45.0% | |
| GTTGGTTGGGACGATGAATT+GGG | - | chr7.4:19942763-19942782 | MS.gene055711:CDS | 45.0% | |
| TACAGCATTGCTCTCTTCCT+TGG | + | chr7.4:19943310-19943329 | None:intergenic | 45.0% | |
| TGAGCTGTTGAGTTTGACTG+TGG | - | chr7.4:19943020-19943039 | MS.gene055711:CDS | 45.0% | |
| TGATTGGGTGATTCCGTTCT+TGG | - | chr7.4:19943365-19943384 | MS.gene055711:CDS | 45.0% | |
| TGTGAGACAACATGAGGTTG+AGG | - | chr7.4:19942570-19942589 | MS.gene055711:CDS | 45.0% | |
| TTGGGACGATGAATTGGGAA+TGG | - | chr7.4:19942768-19942787 | MS.gene055711:CDS | 45.0% | |
| ! | ACCGGGTTTAAGATTGAGAG+AGG | - | chr7.4:19942880-19942899 | MS.gene055711:CDS | 45.0% |
| ! | AGGGTTGATTGAGCCTAATC+CGG | - | chr7.4:19943200-19943219 | MS.gene055711:CDS | 45.0% |
| ! | CCGGGTTTAAGATTGAGAGA+GGG | - | chr7.4:19942881-19942900 | MS.gene055711:CDS | 45.0% |
| ! | GGTTCAGAGGTATGAGAAGA+GGG | - | chr7.4:19942981-19943000 | MS.gene055711:CDS | 45.0% |
| ! | TGATTTGGAGATTGTGGGGT+TGG | - | chr7.4:19942741-19942760 | MS.gene055711:CDS | 45.0% |
| AGGGAGGCTTATGAGAAAGG+AGG | - | chr7.4:19943180-19943199 | MS.gene055711:CDS | 50.0% | |
| AGTTACTCCTTAGGCATCCG+GGG | - | chr7.4:19943112-19943131 | MS.gene055711:CDS | 50.0% | |
| ATGTGCGCGAGTTACTCCTT+AGG | - | chr7.4:19943103-19943122 | MS.gene055711:CDS | 50.0% | |
| CGAGTTACTCCTTAGGCATC+CGG | - | chr7.4:19943110-19943129 | MS.gene055711:CDS | 50.0% | |
| CGCTTCATTTGCATGCCTTG+AGG | - | chr7.4:19942638-19942657 | MS.gene055711:CDS | 50.0% | |
| CTCAGGGAGGCTTATGAGAA+AGG | - | chr7.4:19943177-19943196 | MS.gene055711:CDS | 50.0% | |
| GAGTTACTCCTTAGGCATCC+GGG | - | chr7.4:19943111-19943130 | MS.gene055711:CDS | 50.0% | |
| GATGGGGGAGGTAAAAGAGA+AGG | - | chr7.4:19943342-19943361 | MS.gene055711:CDS | 50.0% | |
| GGGAGGCTTATGAGAAAGGA+GGG | - | chr7.4:19943181-19943200 | MS.gene055711:CDS | 50.0% | |
| TTGGGTGATTCCGTTCTTGG+AGG | - | chr7.4:19943368-19943387 | MS.gene055711:CDS | 50.0% | |
| ! | ATTGGGAATGGCGCTTGTTG+AGG | - | chr7.4:19942780-19942799 | MS.gene055711:CDS | 50.0% |
| ! | GAATGGCGCTTGTTGAGGAA+TGG | - | chr7.4:19942785-19942804 | MS.gene055711:CDS | 50.0% |
| ! | GGGTTCAGAGGTATGAGAAG+AGG | - | chr7.4:19942980-19942999 | MS.gene055711:CDS | 50.0% |
| ! | GGTTGGTTGGGACGATGAAT+TGG | - | chr7.4:19942762-19942781 | MS.gene055711:CDS | 50.0% |
| ! | TTAAGTGTGGTGGGGTTCAG+AGG | - | chr7.4:19942968-19942987 | MS.gene055711:CDS | 50.0% |
| ! | TTGGAGATTGTGGGGTTGGT+TGG | - | chr7.4:19942745-19942764 | MS.gene055711:CDS | 50.0% |
| !! | AGATTGTGGGGTTGGTTGGT+TGG | - | chr7.4:19942749-19942768 | MS.gene055711:CDS | 50.0% |
| !! | GATTGTGGGGTTGGTTGGTT+GGG | - | chr7.4:19942750-19942769 | MS.gene055711:CDS | 50.0% |
| GTCTATGAAGTGGATGGGGG+AGG | - | chr7.4:19943330-19943349 | MS.gene055711:CDS | 55.0% | |
| ! | GGCGCTTGTTGAGGAATGGA+GGG | - | chr7.4:19942789-19942808 | MS.gene055711:CDS | 55.0% |
| ! | TGGCGCTTGTTGAGGAATGG+AGG | - | chr7.4:19942788-19942807 | MS.gene055711:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 19942538 | 19943407 | 19942538 | ID=MS.gene055711 |
| chr7.4 | mRNA | 19942538 | 19943407 | 19942538 | ID=MS.gene055711.t1;Parent=MS.gene055711 |
| chr7.4 | exon | 19942538 | 19943407 | 19942538 | ID=MS.gene055711.t1.exon1;Parent=MS.gene055711.t1 |
| chr7.4 | CDS | 19942538 | 19943407 | 19942538 | ID=cds.MS.gene055711.t1;Parent=MS.gene055711.t1 |
| Gene Sequence |
| Protein sequence |
