AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00933

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00933.t1 MTR_2g021130 100.000 257 0 0 1 257 1 257 0.0 522
MS.gene00933.t1 MTR_1g071430 51.709 234 108 3 28 257 12 244 2.93e-78 236
MS.gene00933.t1 MTR_7g095640 53.586 237 105 3 24 256 2 237 7.02e-78 235
MS.gene00933.t1 MTR_1g110390 45.299 234 124 2 24 254 7 239 1.24e-65 204
MS.gene00933.t1 MTR_7g095530 44.206 233 121 4 28 254 6 235 1.76e-52 171
MS.gene00933.t1 MTR_7g095510 46.491 228 117 4 28 251 6 232 2.91e-52 170
MS.gene00933.t1 MTR_7g095600 43.750 224 120 5 28 246 6 228 5.88e-51 167
MS.gene00933.t1 MTR_7g095550 47.368 76 40 0 137 212 20 95 1.29e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00933.t1 AT4G15470 65.339 251 78 2 16 257 6 256 2.60e-111 321
MS.gene00933.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene00933.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene00933.t1 AT1G03070 52.500 240 109 3 21 256 9 247 8.29e-84 251
MS.gene00933.t1 AT4G02690 51.883 239 108 4 21 254 9 245 6.54e-77 233
MS.gene00933.t1 AT3G63310 51.261 238 103 5 28 257 7 239 4.68e-74 226
MS.gene00933.t1 AT4G14730 45.923 233 120 4 25 252 2 233 5.84e-65 202
MS.gene00933.t1 AT4G02690 44.068 236 91 6 21 253 9 206 1.80e-51 167

Find 72 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAACTGCTTATGCTTTC+TGG -0.049762 2.3:+66287137 MS.gene00933:CDS
GCTAAAATCCTTGCCCTTCT+TGG 0.234291 2.3:-66287164 None:intergenic
TCTAACTGCTTATGCTTTCT+GGG 0.272407 2.3:+66287138 MS.gene00933:CDS
GTGCAGATGTTCTTCCCTCT+TGG 0.303829 2.3:+66287964 MS.gene00933:intron
ATTGAAAGCGTACAGATAAA+TGG 0.313565 2.3:-66286604 None:intergenic
CTCCTCTTAATCTTCTCCTT+AGG 0.318409 2.3:+66286545 MS.gene00933:CDS
GAAAAGAGATGAAGCTGAAT+TGG 0.341580 2.3:+66286378 MS.gene00933:CDS
CAATGTATTCATCATAAGTA+TGG 0.358120 2.3:-66288074 None:intergenic
CCATAGATAGCATGTGATAC+TGG 0.365656 2.3:-66287988 None:intergenic
GCTGAATTGGACATCGAATC+TGG 0.367286 2.3:+66286391 MS.gene00933:CDS
TCCTCTTAATCTTCTCCTTA+GGG 0.369097 2.3:+66286546 MS.gene00933:CDS
CGGTGAAAATCAACTCCGTT+GGG 0.369557 2.3:+66286441 MS.gene00933:CDS
TGCAGATGTTCTTCCCTCTT+GGG 0.369643 2.3:+66287965 MS.gene00933:intron
CCAGTATCACATGCTATCTA+TGG 0.386108 2.3:+66287988 MS.gene00933:CDS
CCTCATAATTATATCTTGCT+TGG 0.408556 2.3:+66286752 MS.gene00933:CDS
ACCTGTTCCTTTCCATCTTG+AGG 0.417636 2.3:+66288130 MS.gene00933:CDS
TCCTCAAGATGGAAAGGAAC+AGG 0.423761 2.3:-66288131 None:intergenic
AACTCCAACGGTGAAGCTAA+TGG 0.425315 2.3:-66286789 None:intergenic
ATACTTATGATGAATACATT+GGG 0.443963 2.3:+66288076 MS.gene00933:CDS
CGGAGACGATGGTGGTTAAG+AGG 0.453233 2.3:-66286504 None:intergenic
TGCTTTCTGGGCTTCCAAGA+AGG 0.469986 2.3:+66287150 MS.gene00933:CDS
CCCCTAAGGAGAAGATTAAG+AGG 0.472124 2.3:-66286547 None:intergenic
CGAGAGAGAGACCTGGGTAG+AGG 0.472666 2.3:-66286420 None:intergenic
CTGGGCTTCCAAGAAGGGCA+AGG 0.482805 2.3:+66287156 MS.gene00933:CDS
ATTAAGAGGAGTATAGAAAA+CGG 0.483866 2.3:-66286533 None:intergenic
TTTCCATCTTGAGGATTCTG+AGG 0.486855 2.3:+66288139 MS.gene00933:CDS
TGTACTCACCGGCATGATGC+AGG 0.493957 2.3:+66287225 MS.gene00933:CDS
CTCTTTACTCTTGTACTCAC+CGG 0.497829 2.3:+66287214 MS.gene00933:CDS
TCGGTGAAAATCAACTCCGT+TGG 0.502314 2.3:+66286440 MS.gene00933:CDS
AGACGAGGAACAAGAGAAGA+GGG 0.503884 2.3:-66286576 None:intergenic
CCAAGCAAGATATAATTATG+AGG 0.505817 2.3:-66286752 None:intergenic
TTCCATCTTGAGGATTCTGA+GGG 0.509793 2.3:+66288140 MS.gene00933:CDS
GAAGAGGGGAATTGCCCCTA+AGG 0.512979 2.3:-66286561 None:intergenic
CATACTTATGATGAATACAT+TGG 0.514094 2.3:+66288075 MS.gene00933:CDS
GCTTTCTGGGCTTCCAAGAA+GGG 0.517151 2.3:+66287151 MS.gene00933:CDS
GGTTTCATTCGCAAAGTCTA+CGG 0.522355 2.3:+66286463 MS.gene00933:CDS
CTCTACCCAGGTCTCTCTCT+CGG 0.533320 2.3:+66286421 MS.gene00933:CDS
CATCTTGAGGATTCTGAGGG+AGG 0.543704 2.3:+66288143 MS.gene00933:CDS
GAGAGAGAGACCTGGGTAGA+GGG 0.551968 2.3:-66286419 None:intergenic
CATGCTATCTATGGTGGAGT+TGG 0.558076 2.3:+66287997 MS.gene00933:CDS
TTGTCCATTAGCTTCACCGT+TGG 0.565046 2.3:+66286785 MS.gene00933:CDS
AAGAGGCAGGTAAACAAAAG+AGG 0.565428 2.3:-66287196 None:intergenic
CTCCCTCAGAATCCTCAAGA+TGG 0.569106 2.3:-66288142 None:intergenic
AGTATAGAAAACGGTTATGA+CGG 0.569627 2.3:-66286524 None:intergenic
CCTCGTTTATCTTGTTGATG+CGG 0.569798 2.3:-66286343 None:intergenic
GAGTACAAGAGTAAAGAGGC+AGG 0.577257 2.3:-66287209 None:intergenic
TCAGAATCCTCAAGATGGAA+AGG 0.577543 2.3:-66288137 None:intergenic
AACGGTTATGACGGAGACGA+TGG 0.586691 2.3:-66286515 None:intergenic
CGTTTATCTTGTTGATGCGG+TGG 0.590169 2.3:-66286340 None:intergenic
GCAACCAACCTGCATCATGC+CGG 0.592343 2.3:-66287233 None:intergenic
CCTCTTAATCTTCTCCTTAG+GGG 0.595131 2.3:+66286547 MS.gene00933:CDS
CGGTGAGTACAAGAGTAAAG+AGG 0.595420 2.3:-66287213 None:intergenic
AAGACGAGGAACAAGAGAAG+AGG 0.601856 2.3:-66286577 None:intergenic
GTATCACATGCTATCTATGG+TGG 0.627746 2.3:+66287991 MS.gene00933:CDS
TTTCACCGAGAGAGAGACCT+GGG 0.628985 2.3:-66286426 None:intergenic
GCATGTGATACTGGCCCAAG+AGG 0.640221 2.3:-66287979 None:intergenic
GGTTATGACGGAGACGATGG+TGG 0.641554 2.3:-66286512 None:intergenic
AACGGTGAAGCTAATGGACA+AGG 0.644202 2.3:-66286783 None:intergenic
TCTGGAGAAACCCTCTACCC+AGG 0.652055 2.3:+66286409 MS.gene00933:CDS
GTTACTTGTGCAAATACTGA+TGG 0.653520 2.3:+66286809 MS.gene00933:CDS
CATGTGATACTGGCCCAAGA+GGG 0.654330 2.3:-66287978 None:intergenic
GGTGAAAATCAACTCCGTTG+GGG 0.660285 2.3:+66286442 MS.gene00933:CDS
GTCGAGATAAAGAGTGACAG+AGG 0.674076 2.3:-66288100 None:intergenic
TACTTATGATGAATACATTG+GGG 0.675391 2.3:+66288077 MS.gene00933:CDS
GACGAGGAACAAGAGAAGAG+GGG 0.683500 2.3:-66286575 None:intergenic
AGGTAAACAAAAGAGGACCA+AGG 0.683783 2.3:-66287189 None:intergenic
ATTTGCACAAGTAACTCCAA+CGG 0.706602 2.3:-66286801 None:intergenic
TTAAGAGGATCTGAGCGGAG+AGG 0.713415 2.3:-66286489 None:intergenic
CCGCATCAACAAGATAAACG+AGG 0.719389 2.3:+66286343 MS.gene00933:CDS
AGATAAATGGAAGAAAGACG+AGG 0.735810 2.3:-66286591 None:intergenic
CTTTGCGAATGAAACCCCAA+CGG 0.748117 2.3:-66286456 None:intergenic
GGTGGTTAAGAGGATCTGAG+CGG 0.764189 2.3:-66286494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAAAAAAAAATCAA+AGG - chr2.3:66286637-66286656 None:intergenic 10.0%
!!! AATTCAATATTTTGAATTAA+AGG + chr2.3:66287670-66287689 MS.gene00933:intron 10.0%
!!! ATTCAATATTTTGAATTAAA+GGG + chr2.3:66287671-66287690 MS.gene00933:intron 10.0%
!! CTTTCTATTATTTATCTATT+TGG + chr2.3:66286863-66286882 MS.gene00933:intron 15.0%
!! GAATGTAAGTAAATTTATTT+AGG + chr2.3:66286923-66286942 MS.gene00933:intron 15.0%
!! TAAACTATTATTACTTTGAT+TGG + chr2.3:66287038-66287057 MS.gene00933:intron 15.0%
!!! AATTGTTTTATGAATTGATT+AGG + chr2.3:66286650-66286669 MS.gene00933:intron 15.0%
!!! AATTTAGAAGAATCAATTTT+TGG + chr2.3:66286992-66287011 MS.gene00933:intron 15.0%
!!! AGAGTTTTGAATTTTAAAAT+TGG + chr2.3:66287770-66287789 MS.gene00933:intron 15.0%
!!! ATTGTTTTATGAATTGATTA+GGG + chr2.3:66286651-66286670 MS.gene00933:intron 15.0%
!! AAAAAAAAATCAAAGGATGA+AGG - chr2.3:66286630-66286649 None:intergenic 20.0%
!! AAGTAATAATAGTTTATGCT+CGG - chr2.3:66287034-66287053 None:intergenic 20.0%
!! AATAGAAAGAGAATAACAAA+TGG - chr2.3:66286852-66286871 None:intergenic 20.0%
!! ATACTTATGATGAATACATT+GGG + chr2.3:66288076-66288095 MS.gene00933:CDS 20.0%
!! ATGATACAAAAATAAATGAC+AGG - chr2.3:66287268-66287287 None:intergenic 20.0%
!! ATTAAGAATGGAATTATTAG+GGG + chr2.3:66287439-66287458 MS.gene00933:intron 20.0%
!! GATTAAGAATGGAATTATTA+GGG + chr2.3:66287438-66287457 MS.gene00933:intron 20.0%
!!! TATTTATCTATTTGGTTTTG+CGG + chr2.3:66286871-66286890 MS.gene00933:intron 20.0%
! CAATGTATTCATCATAAGTA+TGG - chr2.3:66288077-66288096 None:intergenic 25.0%
! CATACTTATGATGAATACAT+TGG + chr2.3:66288075-66288094 MS.gene00933:CDS 25.0%
! GGATTAAGAATGGAATTATT+AGG + chr2.3:66287437-66287456 MS.gene00933:intron 25.0%
! TACTTATGATGAATACATTG+GGG + chr2.3:66288077-66288096 MS.gene00933:CDS 25.0%
!! ATTAAGAGGAGTATAGAAAA+CGG - chr2.3:66286536-66286555 None:intergenic 25.0%
!! TTCTACCATATTTTCTACAA+TGG - chr2.3:66287481-66287500 None:intergenic 25.0%
!! TTGTATCATTGATTGATAAC+TGG + chr2.3:66287279-66287298 MS.gene00933:intron 25.0%
ACACGGTGAATGATAATATT+GGG + chr2.3:66287380-66287399 MS.gene00933:intron 30.0%
ACATAGGATAGGATTAAGAA+TGG + chr2.3:66287427-66287446 MS.gene00933:intron 30.0%
AGTATAGAAAACGGTTATGA+CGG - chr2.3:66286527-66286546 None:intergenic 30.0%
ATAATATTGGGATGGATAAG+TGG + chr2.3:66287392-66287411 MS.gene00933:intron 30.0%
CCAAGCAAGATATAATTATG+AGG - chr2.3:66286755-66286774 None:intergenic 30.0%
CCTCATAATTATATCTTGCT+TGG + chr2.3:66286752-66286771 MS.gene00933:CDS 30.0%
GAAAATATGGTAGAAATCAC+TGG + chr2.3:66287486-66287505 MS.gene00933:intron 30.0%
TACACGGTGAATGATAATAT+TGG + chr2.3:66287379-66287398 MS.gene00933:intron 30.0%
TTATAGTGAATCACACCTAA+TGG - chr2.3:66287806-66287825 None:intergenic 30.0%
TTTCAATATGAACGAATGTG+AGG + chr2.3:66287336-66287355 MS.gene00933:intron 30.0%
! ATTGAAAGCGTACAGATAAA+TGG - chr2.3:66286607-66286626 None:intergenic 30.0%
! ATTGATTGATAACTGGTTGT+TGG + chr2.3:66287286-66287305 MS.gene00933:intron 30.0%
! GTTAAACCTTTTCTCCTTAT+AGG - chr2.3:66287865-66287884 None:intergenic 30.0%
AAATGACCTAGTCTAAGTCT+AGG + chr2.3:66287581-66287600 MS.gene00933:intron 35.0%
AGATAAATGGAAGAAAGACG+AGG - chr2.3:66286594-66286613 None:intergenic 35.0%
ATTTGCACAAGTAACTCCAA+CGG - chr2.3:66286804-66286823 None:intergenic 35.0%
CGCTACCATTGTAGAAAATA+TGG + chr2.3:66287473-66287492 MS.gene00933:intron 35.0%
GAAAAGAGATGAAGCTGAAT+TGG + chr2.3:66286378-66286397 MS.gene00933:CDS 35.0%
GATAATGAAAAGCTGTCTCT+AGG - chr2.3:66287720-66287739 None:intergenic 35.0%
GGTGAATGATAATATTGGGA+TGG + chr2.3:66287384-66287403 MS.gene00933:intron 35.0%
GTTACTTGTGCAAATACTGA+TGG + chr2.3:66286809-66286828 MS.gene00933:CDS 35.0%
TAAAAGGAGGATAGATGAGA+TGG + chr2.3:66287642-66287661 MS.gene00933:intron 35.0%
TATCATATGCTTTGACACCA+CGG + chr2.3:66287736-66287755 MS.gene00933:intron 35.0%
TATGTCTGTTGTTGTAATGC+AGG + chr2.3:66287067-66287086 MS.gene00933:intron 35.0%
TCCTCTTAATCTTCTCCTTA+GGG + chr2.3:66286546-66286565 MS.gene00933:CDS 35.0%
TCTAACTGCTTATGCTTTCT+GGG + chr2.3:66287138-66287157 MS.gene00933:CDS 35.0%
TGAATCACACCTAATGGAAA+AGG - chr2.3:66287800-66287819 None:intergenic 35.0%
TTGTGCAAATACTGATGGTA+GGG + chr2.3:66286814-66286833 MS.gene00933:intron 35.0%
! AATTATGAGGATGCTTTTGC+TGG - chr2.3:66286742-66286761 None:intergenic 35.0%
! GATTAACAGAAGCACGTAAA+AGG + chr2.3:66287626-66287645 MS.gene00933:intron 35.0%
!! GACTTAGACTAGGTCATTTT+TGG - chr2.3:66287580-66287599 None:intergenic 35.0%
!! TTTATGCTCGGTTCGAATTT+TGG - chr2.3:66287022-66287041 None:intergenic 35.0%
!!! TAGTTTTGATTCCGTTGTTG+AGG + chr2.3:66286714-66286733 MS.gene00933:intron 35.0%
!!! TTGATTAGGGTTTTATTGCG+TGG + chr2.3:66286664-66286683 MS.gene00933:intron 35.0%
AAAAATTGTGCTTGAGGCGT+TGG + chr2.3:66287090-66287109 MS.gene00933:CDS 40.0%
AAGAGGCAGGTAAACAAAAG+AGG - chr2.3:66287199-66287218 None:intergenic 40.0%
AGGAGTTTCGGAATCAACAA+CGG - chr2.3:66287700-66287719 None:intergenic 40.0%
AGGTAAACAAAAGAGGACCA+AGG - chr2.3:66287192-66287211 None:intergenic 40.0%
ATATGGTAGAAATCACTGGC+TGG + chr2.3:66287490-66287509 MS.gene00933:intron 40.0%
CATGTGTTGCATCACCTATA+AGG + chr2.3:66287848-66287867 MS.gene00933:intron 40.0%
CCAGTATCACATGCTATCTA+TGG + chr2.3:66287988-66288007 MS.gene00933:CDS 40.0%
CCATAGATAGCATGTGATAC+TGG - chr2.3:66287991-66288010 None:intergenic 40.0%
CCTCGTTTATCTTGTTGATG+CGG - chr2.3:66286346-66286365 None:intergenic 40.0%
CCTCTTAATCTTCTCCTTAG+GGG + chr2.3:66286547-66286566 MS.gene00933:CDS 40.0%
CTCCTCTTAATCTTCTCCTT+AGG + chr2.3:66286545-66286564 MS.gene00933:CDS 40.0%
CTCTAACTGCTTATGCTTTC+TGG + chr2.3:66287137-66287156 MS.gene00933:CDS 40.0%
CTCTTTACTCTTGTACTCAC+CGG + chr2.3:66287214-66287233 MS.gene00933:CDS 40.0%
CTTGTGCAAATACTGATGGT+AGG + chr2.3:66286813-66286832 MS.gene00933:intron 40.0%
GCATCACCTATAAGGAGAAA+AGG + chr2.3:66287856-66287875 MS.gene00933:intron 40.0%
GGTTTCATTCGCAAAGTCTA+CGG + chr2.3:66286463-66286482 MS.gene00933:CDS 40.0%
GTATCACATGCTATCTATGG+TGG + chr2.3:66287991-66288010 MS.gene00933:CDS 40.0%
TCAGAATCCTCAAGATGGAA+AGG - chr2.3:66288140-66288159 None:intergenic 40.0%
TGCAGGAAAAATTGTGCTTG+AGG + chr2.3:66287084-66287103 MS.gene00933:intron 40.0%
TTCCATCTTGAGGATTCTGA+GGG + chr2.3:66288140-66288159 MS.gene00933:CDS 40.0%
TTTCCATCTTGAGGATTCTG+AGG + chr2.3:66288139-66288158 MS.gene00933:CDS 40.0%
! AAAGCTGTCTCTAGGAGTTT+CGG - chr2.3:66287712-66287731 None:intergenic 40.0%
! AACTCTTGTGTTTGAAACCG+TGG - chr2.3:66287756-66287775 None:intergenic 40.0%
! GCTCAAGACTAGATTTTCTC+TGG + chr2.3:66287942-66287961 MS.gene00933:intron 40.0%
! GGCGACACAAAAATTGATTC+TGG + chr2.3:66286892-66286911 MS.gene00933:intron 40.0%
! TAACAGAAGCACGTAAAAGG+AGG + chr2.3:66287629-66287648 MS.gene00933:intron 40.0%
! TTTTGCTGGTACCTCAACAA+CGG - chr2.3:66286728-66286747 None:intergenic 40.0%
!! AACTGGTTGTTGGTGTTTTC+TGG + chr2.3:66287296-66287315 MS.gene00933:intron 40.0%
!! ATTGGCTCTCCTTTTCCATT+AGG + chr2.3:66287788-66287807 MS.gene00933:intron 40.0%
!! CTCTGTGTGTTGTTTCTACA+CGG + chr2.3:66287363-66287382 MS.gene00933:intron 40.0%
AACTCCAACGGTGAAGCTAA+TGG - chr2.3:66286792-66286811 None:intergenic 45.0%
AAGACGAGGAACAAGAGAAG+AGG - chr2.3:66286580-66286599 None:intergenic 45.0%
ACCTGTTCCTTTCCATCTTG+AGG + chr2.3:66288130-66288149 MS.gene00933:CDS 45.0%
AGACCACCTAGACTTAGACT+AGG - chr2.3:66287590-66287609 None:intergenic 45.0%
AGACGAGGAACAAGAGAAGA+GGG - chr2.3:66286579-66286598 None:intergenic 45.0%
AGTCTAAGTCTAGGTGGTCT+AGG + chr2.3:66287590-66287609 MS.gene00933:intron 45.0%
CACGCAGGATAACATAGGAT+AGG + chr2.3:66287416-66287435 MS.gene00933:intron 45.0%
CCCCTAAGGAGAAGATTAAG+AGG - chr2.3:66286550-66286569 None:intergenic 45.0%
CCGCATCAACAAGATAAACG+AGG + chr2.3:66286343-66286362 MS.gene00933:CDS 45.0%
CGGTGAAAATCAACTCCGTT+GGG + chr2.3:66286441-66286460 MS.gene00933:CDS 45.0%
CGGTGAGTACAAGAGTAAAG+AGG - chr2.3:66287216-66287235 None:intergenic 45.0%
CGTGTAGAAACAACACACAG+AGG - chr2.3:66287365-66287384 None:intergenic 45.0%
CGTTTATCTTGTTGATGCGG+TGG - chr2.3:66286343-66286362 None:intergenic 45.0%
CTTTGCGAATGAAACCCCAA+CGG - chr2.3:66286459-66286478 None:intergenic 45.0%
GAGTACAAGAGTAAAGAGGC+AGG - chr2.3:66287212-66287231 None:intergenic 45.0%
GCTAAAATCCTTGCCCTTCT+TGG - chr2.3:66287167-66287186 None:intergenic 45.0%
GCTGAATTGGACATCGAATC+TGG + chr2.3:66286391-66286410 MS.gene00933:CDS 45.0%
GGTGAAAATCAACTCCGTTG+GGG + chr2.3:66286442-66286461 MS.gene00933:CDS 45.0%
GTCGAGATAAAGAGTGACAG+AGG - chr2.3:66288103-66288122 None:intergenic 45.0%
TCCTCAAGATGGAAAGGAAC+AGG - chr2.3:66288134-66288153 None:intergenic 45.0%
TCGGTGAAAATCAACTCCGT+TGG + chr2.3:66286440-66286459 MS.gene00933:CDS 45.0%
TGACCTAGTCTAAGTCTAGG+TGG + chr2.3:66287584-66287603 MS.gene00933:intron 45.0%
TGCAGATGTTCTTCCCTCTT+GGG + chr2.3:66287965-66287984 MS.gene00933:intron 45.0%
! AACGGTGAAGCTAATGGACA+AGG - chr2.3:66286786-66286805 None:intergenic 45.0%
! CATGCTATCTATGGTGGAGT+TGG + chr2.3:66287997-66288016 MS.gene00933:CDS 45.0%
! TTGTCCATTAGCTTCACCGT+TGG + chr2.3:66286785-66286804 MS.gene00933:CDS 45.0%
!!! GGCAAGGATTTTAGCTACCT+TGG + chr2.3:66287172-66287191 MS.gene00933:CDS 45.0%
CATGTGATACTGGCCCAAGA+GGG - chr2.3:66287981-66288000 None:intergenic 50.0%
CTAGGTGGTCTAGGAATGTG+TGG + chr2.3:66287599-66287618 MS.gene00933:intron 50.0%
CTCCCTCAGAATCCTCAAGA+TGG - chr2.3:66288145-66288164 None:intergenic 50.0%
GACGAGGAACAAGAGAAGAG+GGG - chr2.3:66286578-66286597 None:intergenic 50.0%
GCTTTCTGGGCTTCCAAGAA+GGG + chr2.3:66287151-66287170 MS.gene00933:CDS 50.0%
GGTGGTTAAGAGGATCTGAG+CGG - chr2.3:66286497-66286516 None:intergenic 50.0%
GTGCAGATGTTCTTCCCTCT+TGG + chr2.3:66287964-66287983 MS.gene00933:intron 50.0%
GTGGTCACGCAGGATAACAT+AGG + chr2.3:66287411-66287430 MS.gene00933:intron 50.0%
TGCTTTCTGGGCTTCCAAGA+AGG + chr2.3:66287150-66287169 MS.gene00933:CDS 50.0%
TTAAGAGGATCTGAGCGGAG+AGG - chr2.3:66286492-66286511 None:intergenic 50.0%
TTTCACCGAGAGAGAGACCT+GGG - chr2.3:66286429-66286448 None:intergenic 50.0%
! AACGGTTATGACGGAGACGA+TGG - chr2.3:66286518-66286537 None:intergenic 50.0%
! CATCTTGAGGATTCTGAGGG+AGG + chr2.3:66288143-66288162 MS.gene00933:CDS 50.0%
! TTTTCACCGAGAGAGAGACC+TGG - chr2.3:66286430-66286449 None:intergenic 50.0%
!!! GGCGTTGGTTTTGACATCTG+CGG + chr2.3:66287105-66287124 MS.gene00933:CDS 50.0%
!!! GTTGGTTTTGACATCTGCGG+TGG + chr2.3:66287108-66287127 MS.gene00933:CDS 50.0%
CTCTACCCAGGTCTCTCTCT+CGG + chr2.3:66286421-66286440 MS.gene00933:CDS 55.0%
GAAGAGGGGAATTGCCCCTA+AGG - chr2.3:66286564-66286583 None:intergenic 55.0%
GAGAGAGAGACCTGGGTAGA+GGG - chr2.3:66286422-66286441 None:intergenic 55.0%
GCAACCAACCTGCATCATGC+CGG - chr2.3:66287236-66287255 None:intergenic 55.0%
GCATGTGATACTGGCCCAAG+AGG - chr2.3:66287982-66288001 None:intergenic 55.0%
GGATGGATAAGTGGTCACGC+AGG + chr2.3:66287401-66287420 MS.gene00933:intron 55.0%
TCTGGAGAAACCCTCTACCC+AGG + chr2.3:66286409-66286428 MS.gene00933:CDS 55.0%
TGTACTCACCGGCATGATGC+AGG + chr2.3:66287225-66287244 MS.gene00933:CDS 55.0%
! CGGAGACGATGGTGGTTAAG+AGG - chr2.3:66286507-66286526 None:intergenic 55.0%
! GGTTATGACGGAGACGATGG+TGG - chr2.3:66286515-66286534 None:intergenic 55.0%
CGAGAGAGAGACCTGGGTAG+AGG - chr2.3:66286423-66286442 None:intergenic 60.0%
CTCACCGGCATGATGCAGGT+TGG + chr2.3:66287229-66287248 MS.gene00933:intron 60.0%
CTGGGCTTCCAAGAAGGGCA+AGG + chr2.3:66287156-66287175 MS.gene00933:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 66286319 66288176 66286319 ID=MS.gene00933
chr2.3 mRNA 66286319 66288176 66286319 ID=MS.gene00933.t1;Parent=MS.gene00933
chr2.3 exon 66286319 66286613 66286319 ID=MS.gene00933.t1.exon1;Parent=MS.gene00933.t1
chr2.3 CDS 66286319 66286613 66286319 ID=cds.MS.gene00933.t1;Parent=MS.gene00933.t1
chr2.3 exon 66286717 66286830 66286717 ID=MS.gene00933.t1.exon2;Parent=MS.gene00933.t1
chr2.3 CDS 66286717 66286830 66286717 ID=cds.MS.gene00933.t1;Parent=MS.gene00933.t1
chr2.3 exon 66287089 66287246 66287089 ID=MS.gene00933.t1.exon3;Parent=MS.gene00933.t1
chr2.3 CDS 66287089 66287246 66287089 ID=cds.MS.gene00933.t1;Parent=MS.gene00933.t1
chr2.3 exon 66287970 66288176 66287970 ID=MS.gene00933.t1.exon4;Parent=MS.gene00933.t1
chr2.3 CDS 66287970 66288176 66287970 ID=cds.MS.gene00933.t1;Parent=MS.gene00933.t1
Gene Sequence

>MS.gene00933

ATGATGATGTTCGATCAGCAACCACCGCATCAACAAGATAAACGAGGCTACACAAGCGTGAAAAGAGATGAAGCTGAATTGGACATCGAATCTGGAGAAACCCTCTACCCAGGTCTCTCTCTCGGTGAAAATCAACTCCGTTGGGGTTTCATTCGCAAAGTCTACGGAATCCTCTCCGCTCAGATCCTCTTAACCACCATCGTCTCCGTCATAACCGTTTTCTATACTCCTCTTAATCTTCTCCTTAGGGGCAATTCCCCTCTTCTCTTGTTCCTCGTCTTTCTTCCATTTATCTGTACGCTTTCAATCCTTCATCCTTTGATTTTTTTTTAATTGTTTTATGAATTGATTAGGGTTTTATTGCGTGGATCTGATTTGATTTGAATTTTTTGTTGTAGTTTTGATTCCGTTGTTGAGGTACCAGCAAAAGCATCCTCATAATTATATCTTGCTTGGACTTTTTACCTTGTCCATTAGCTTCACCGTTGGAGTTACTTGTGCAAATACTGATGGTAGGGTTTCGTTCTCATCCATTTGTTATTCTCTTTCTATTATTTATCTATTTGGTTTTGCGGCGACACAAAAATTGATTCTGGTTAAATTTGAATGTAAGTAAATTTATTTAGGTTTATCTAAGTAAATTTGAATGTAAGTAAATCTGATCAAAAGCTACAATTTAGAAGAATCAATTTTTGGTGCTCCAAAATTCGAACCGAGCATAAACTATTATTACTTTGATTGGTTGTAATATGTCTGTTGTTGTAATGCAGGAAAAATTGTGCTTGAGGCGTTGGTTTTGACATCTGCGGTGGTTTCTTCTCTAACTGCTTATGCTTTCTGGGCTTCCAAGAAGGGCAAGGATTTTAGCTACCTTGGTCCTCTTTTGTTTACCTGCCTCTTTACTCTTGTACTCACCGGCATGATGCAGGTTGGTTGCATTACATTTCCTGTCATTTATTTTTGTATCATTGATTGATAACTGGTTGTTGGTGTTTTCTGGCTTTAGTTTTTTATACGTTTCAATATGAACGAATGTGAGGTTTCCTCTGTGTGTTGTTTCTACACGGTGAATGATAATATTGGGATGGATAAGTGGTCACGCAGGATAACATAGGATAGGATTAAGAATGGAATTATTAGGGGAAAAAATGAGTCGCTACCATTGTAGAAAATATGGTAGAAATCACTGGCTGGAATCAGTGACATTAGAAGATATGTGATCTGATCAGAAGTAAGTTTGAATCTTTATGATGTGAAACCAAAAATGACCTAGTCTAAGTCTAGGTGGTCTAGGAATGTGTGGTGAAGATTAACAGAAGCACGTAAAAGGAGGATAGATGAGATGGAATTCAATTCAATATTTTGAATTAAAGGGAGACCGTTGTTGATTCCGAAACTCCTAGAGACAGCTTTTCATTATCATATGCTTTGACACCACGGTTTCAAACACAAGAGTTTTGAATTTTAAAATTGGCTCTCCTTTTCCATTAGGTGTGATTCACTATAAGATATTATGAAATTGTTGTATTCATGTGTTGCATCACCTATAAGGAGAAAAGGTTTAACTATAGATGCACACATATGAAATTGTTGTACATAGTTTATGCTTGCATCTTTTCTCTTGCTCAAGACTAGATTTTCTCTGGTGCAGATGTTCTTCCCTCTTGGGCCAGTATCACATGCTATCTATGGTGGAGTTGGTGCTATGATTTTCTCTGCTTATATTGTCTATGACACTGACAATCTGATCAAGCGCCATACTTATGATGAATACATTGGGGCCTCTGTCACTCTTTATCTCGACATTCTGAACCTGTTCCTTTCCATCTTGAGGATTCTGAGGGAGGCAAACAATTAA
Protein sequence

>MS.gene00933.t1

MMMFDQQPPHQQDKRGYTSVKRDEAELDIESGETLYPGLSLGENQLRWGFIRKVYGILSAQILLTTIVSVITVFYTPLNLLLRGNSPLLLFLVFLPFIFLIPLLRYQQKHPHNYILLGLFTLSISFTVGVTCANTDGKIVLEALVLTSAVVSSLTAYAFWASKKGKDFSYLGPLLFTCLFTLVLTGMMQMFFPLGPVSHAIYGGVGAMIFSAYIVYDTDNLIKRHTYDEYIGASVTLYLDILNLFLSILRILREANN