Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50537.t1 | XP_003590585.1 | 99.2 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 9.20E-121 | 443 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50537.t1 | Q9SA63 | 74.1 | 247 | 60 | 1 | 1 | 243 | 1 | 247 | 3.0e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50537.t1 | G7IDK0 | 99.2 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 6.6e-121 | 443.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene50537 | -0.817079 | 3.97E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene50537 | -0.82864 | 8.04E-55 | -1.69E-46 |
| MS.gene049599 | MS.gene50537 | 0.849594 | 2.93E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene50537 | -0.833916 | 4.05E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene50537 | -0.804963 | 1.68E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene50537 | -0.831116 | 2.00E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene50537 | -0.82599 | 3.47E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene50537 | -0.815856 | 7.46E-52 | -1.69E-46 |
| MS.gene050319 | MS.gene50537 | 0.826535 | 2.57E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene50537 | 0.848296 | 6.71E-60 | -1.69E-46 |
| MS.gene050623 | MS.gene50537 | 0.855634 | 5.53E-62 | -1.69E-46 |
| MS.gene050642 | MS.gene50537 | -0.872257 | 3.65E-67 | -1.69E-46 |
| MS.gene050815 | MS.gene50537 | -0.80116 | 1.03E-48 | -1.69E-46 |
| MS.gene05119 | MS.gene50537 | 0.858761 | 6.60E-63 | -1.69E-46 |
| MS.gene051662 | MS.gene50537 | -0.832913 | 7.21E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene50537 | -0.801553 | 8.53E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene50537 | -0.843799 | 1.12E-58 | -1.69E-46 |
| MS.gene052077 | MS.gene50537 | -0.826378 | 2.80E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene50537 | -0.843128 | 1.69E-58 | -1.69E-46 |
| MS.gene052302 | MS.gene50537 | -0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene50537 | 0.881559 | 2.17E-70 | -1.69E-46 |
| MS.gene052358 | MS.gene50537 | 0.809136 | 2.20E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene50537 | -0.822058 | 2.90E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene50537 | -0.853697 | 2.01E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene50537 | -0.820606 | 6.28E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene50537 | -0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene50537 | -0.807636 | 4.59E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene50537 | -0.836902 | 7.13E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene50537 | -0.819092 | 1.39E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene50537 | -0.804703 | 1.90E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene50537 | -0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene50537 | -0.815276 | 1.00E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene50537 | 0.857315 | 1.77E-62 | -1.69E-46 |
| MS.gene056087 | MS.gene50537 | -0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene50537 | -0.839453 | 1.57E-57 | -1.69E-46 |
| MS.gene057439 | MS.gene50537 | -0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene058201 | MS.gene50537 | -0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene058661 | MS.gene50537 | 0.822084 | 2.86E-53 | -1.69E-46 |
| MS.gene059033 | MS.gene50537 | 0.859826 | 3.16E-63 | -1.69E-46 |
| MS.gene059285 | MS.gene50537 | -0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene50537 | -0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene50537 | -0.813379 | 2.64E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene50537 | 0.804398 | 2.20E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene50537 | 0.863727 | 2.03E-64 | -1.69E-46 |
| MS.gene061049 | MS.gene50537 | -0.813795 | 2.14E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene50537 | 0.834504 | 2.89E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50537 | MS.gene004517 | PPI |
| MS.gene50537 | MS.gene71997 | PPI |
| MS.gene50537 | MS.gene61279 | PPI |
| MS.gene50537 | MS.gene002831 | PPI |
| MS.gene50537 | MS.gene72356 | PPI |
| MS.gene50537 | MS.gene011576 | PPI |
| MS.gene50537 | MS.gene047261 | PPI |
| MS.gene50537 | MS.gene00933 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50537.t1 | MTR_1g071430 | 99.180 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 2.57e-176 | 484 |
| MS.gene50537.t1 | MTR_7g095640 | 76.170 | 235 | 56 | 0 | 9 | 243 | 3 | 237 | 3.76e-115 | 329 |
| MS.gene50537.t1 | MTR_7g095510 | 59.483 | 232 | 94 | 0 | 8 | 239 | 2 | 233 | 2.14e-86 | 256 |
| MS.gene50537.t1 | MTR_7g095600 | 58.650 | 237 | 94 | 2 | 10 | 242 | 4 | 240 | 1.74e-85 | 254 |
| MS.gene50537.t1 | MTR_7g095530 | 56.034 | 232 | 102 | 0 | 8 | 239 | 2 | 233 | 3.95e-84 | 251 |
| MS.gene50537.t1 | MTR_1g110390 | 50.211 | 237 | 113 | 1 | 9 | 240 | 2 | 238 | 1.17e-76 | 232 |
| MS.gene50537.t1 | MTR_2g021130 | 50.855 | 234 | 110 | 3 | 12 | 244 | 28 | 257 | 1.18e-73 | 225 |
| MS.gene50537.t1 | MTR_7g095550 | 58.667 | 75 | 31 | 0 | 123 | 197 | 19 | 93 | 2.96e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50537.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 3.26e-137 | 385 |
| MS.gene50537.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 3.26e-137 | 385 |
| MS.gene50537.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 3.26e-137 | 385 |
| MS.gene50537.t1 | AT3G63310 | 74.590 | 244 | 57 | 1 | 1 | 244 | 1 | 239 | 5.10e-129 | 364 |
| MS.gene50537.t1 | AT4G02690 | 74.286 | 245 | 59 | 2 | 1 | 241 | 1 | 245 | 4.71e-123 | 350 |
| MS.gene50537.t1 | AT4G02690 | 62.449 | 245 | 50 | 3 | 1 | 241 | 1 | 207 | 2.74e-90 | 265 |
| MS.gene50537.t1 | AT4G14730 | 56.957 | 230 | 98 | 1 | 10 | 238 | 3 | 232 | 1.54e-89 | 264 |
| MS.gene50537.t1 | AT4G15470 | 52.419 | 248 | 111 | 5 | 1 | 244 | 12 | 256 | 1.92e-81 | 244 |
Find 58 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGACTCTCTACACATTT+TGG | 0.130439 | 1.2:-54826676 | MS.gene50537:CDS |
| GGCTTCTGTCTCCTTATATT+TGG | 0.136616 | 1.2:-54826356 | MS.gene50537:CDS |
| ATACTAGTTCTTATGGTCTT+TGG | 0.193055 | 1.2:-54826599 | MS.gene50537:CDS |
| TGGTGCTATACTAGTTCTTA+TGG | 0.241827 | 1.2:-54826606 | MS.gene50537:CDS |
| TACTAGTTCTTATGGTCTTT+GGG | 0.245956 | 1.2:-54826598 | MS.gene50537:CDS |
| TATGGTCTTTGGGATGATTC+AGG | 0.268186 | 1.2:-54826588 | MS.gene50537:intron |
| TTCCTTGGCCCCTTCTTGTT+TGG | 0.270915 | 1.2:-54826626 | MS.gene50537:CDS |
| CGATGATGATGTAGACTTTA+CGG | 0.298814 | 1.2:+54827933 | None:intergenic |
| ATGAAGGACCATCGGAGTTC+GGG | 0.303827 | 1.2:+54827956 | None:intergenic |
| GTATACAGAGAAAGTAATTC+TGG | 0.310445 | 1.2:-54826732 | MS.gene50537:intron |
| GTTGATGATGTCCAAATATA+AGG | 0.321463 | 1.2:+54826345 | None:intergenic |
| ATTCCTATGATGAATTCATT+TGG | 0.330140 | 1.2:-54826378 | MS.gene50537:CDS |
| TTCCTATGATGAATTCATTT+GGG | 0.372763 | 1.2:-54826377 | MS.gene50537:CDS |
| AAGTTATCTACAATGATCTA+TGG | 0.395967 | 1.2:-54826466 | MS.gene50537:CDS |
| GGCTATGATTTCAACTTCCT+TGG | 0.415448 | 1.2:-54826641 | MS.gene50537:CDS |
| GATGAAGGACCATCGGAGTT+CGG | 0.419295 | 1.2:+54827955 | None:intergenic |
| GGTAGCGAAGAAAGTGGAAA+TGG | 0.434726 | 1.2:+54827856 | None:intergenic |
| TAGTGAGCAAAGACAGGAAA+AGG | 0.461448 | 1.2:+54826323 | None:intergenic |
| TACAATGATCTATGGTTGCT+TGG | 0.466219 | 1.2:-54826458 | MS.gene50537:CDS |
| TCGGGGCTTTCGAGCATCAT+CGG | 0.470230 | 1.2:+54827974 | None:intergenic |
| TTCTTCGCTACCACCGGCGC+TGG | 0.472313 | 1.2:-54827845 | MS.gene50537:CDS |
| AACTCAAGAAGATGTGGAAT+CGG | 0.480322 | 1.2:-54828048 | None:intergenic |
| GCAAGCAGAAGGTAATTAAT+CGG | 0.485670 | 1.2:+54827660 | None:intergenic |
| CGGGGCTTTCGAGCATCATC+GGG | 0.487087 | 1.2:+54827975 | None:intergenic |
| AGCGCAACGCACTGATGAAA+GGG | 0.488809 | 1.2:+54827792 | None:intergenic |
| AGCCCAAATGAATTCATCAT+AGG | 0.498521 | 1.2:+54826375 | None:intergenic |
| TGAAAATAGTGAGCAAAGAC+AGG | 0.506317 | 1.2:+54826317 | None:intergenic |
| AAGCGCAACGCACTGATGAA+AGG | 0.522068 | 1.2:+54827791 | None:intergenic |
| TAGTATAGCACCAAACAAGA+AGG | 0.529396 | 1.2:+54826616 | None:intergenic |
| TTCTGATAATAGTAGTAAAG+AGG | 0.538225 | 1.2:+54827687 | None:intergenic |
| TCCACTTTCTTCGCTACCAC+CGG | 0.539244 | 1.2:-54827851 | MS.gene50537:CDS |
| GAGTGAAAACCGCAAGCAGA+AGG | 0.540358 | 1.2:+54827649 | None:intergenic |
| GATTAATTACCTTCTGCTTG+CGG | 0.545443 | 1.2:-54827658 | MS.gene50537:CDS |
| CACCAAACAAGAAGGGGCCA+AGG | 0.548467 | 1.2:+54826624 | None:intergenic |
| TCAAGTTGTCTGTATCGTAC+AGG | 0.553801 | 1.2:+54826410 | None:intergenic |
| GATGTAGACTTTACGGATGA+AGG | 0.554116 | 1.2:+54827940 | None:intergenic |
| TTGGCAGCAATTATATTCTG+TGG | 0.570347 | 1.2:-54826439 | MS.gene50537:CDS |
| GTAGCGAAGAAAGTGGAAAT+GGG | 0.571169 | 1.2:+54827857 | None:intergenic |
| TTGAGCTGTGCTTTCACTAG+CGG | 0.574404 | 1.2:-54827603 | MS.gene50537:intron |
| TGTTATATTGACTGCTGTGG+TGG | 0.576783 | 1.2:-54826705 | MS.gene50537:CDS |
| AGTATAGCACCAAACAAGAA+GGG | 0.588101 | 1.2:+54826617 | None:intergenic |
| GACGGCGCCGACAGCGATGG+TGG | 0.596967 | 1.2:+54827895 | None:intergenic |
| ATTGTAGATAACTTGCCCAA+TGG | 0.603009 | 1.2:+54826475 | None:intergenic |
| AAGAGCGAGACCAGCGCCGG+TGG | 0.605231 | 1.2:+54827835 | None:intergenic |
| TCGAAAGCCCCGAACTCCGA+TGG | 0.608560 | 1.2:-54827964 | MS.gene50537:CDS |
| AGCTGTTATATTGACTGCTG+TGG | 0.612381 | 1.2:-54826708 | MS.gene50537:CDS |
| TCGAGCATCATCGGGTAGAG+AGG | 0.614144 | 1.2:+54827983 | None:intergenic |
| GAAAGTGGAAATGGGACGAA+CGG | 0.622665 | 1.2:+54827865 | None:intergenic |
| GGGACGAACGGTGACGACGA+CGG | 0.624706 | 1.2:+54827877 | None:intergenic |
| GACGACGGCGCCGACAGCGA+TGG | 0.625482 | 1.2:+54827892 | None:intergenic |
| TCTTGAACCAGTTTCCACAT+CGG | 0.636857 | 1.2:+54828006 | None:intergenic |
| GTAAAGAGCGAGACCAGCGC+CGG | 0.640236 | 1.2:+54827832 | None:intergenic |
| CTTTACGGATGAAGGACCAT+CGG | 0.645720 | 1.2:+54827948 | None:intergenic |
| CTACTCGCCACCATCGCTGT+CGG | 0.646355 | 1.2:-54827902 | MS.gene50537:CDS |
| TGGAATCGGAATCAACCCTA+CGG | 0.653157 | 1.2:-54828034 | MS.gene50537:CDS |
| GCCGGTGGTAGCGAAGAAAG+TGG | 0.667378 | 1.2:+54827850 | None:intergenic |
| GTATAGCACCAAACAAGAAG+GGG | 0.669417 | 1.2:+54826618 | None:intergenic |
| TGAAGGACCATCGGAGTTCG+GGG | 0.676066 | 1.2:+54827957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATTCTGTAATAATTTG+AGG | - | chr1.2:54826908-54826927 | MS.gene50537:intron | 20.0% |
| !!! | CTAACTAGAATTTAACATTT+TGG | - | chr1.2:54827051-54827070 | MS.gene50537:intron | 20.0% |
| !!! | GATTTGAATTTTTTGTTATC+TGG | - | chr1.2:54827387-54827406 | MS.gene50537:intron | 20.0% |
| ! | AAAGAAAGAAAGAAAGAAAG+CGG | + | chr1.2:54826782-54826801 | None:intergenic | 25.0% |
| ! | AAATGTGTTAATTGATTAGG+TGG | - | chr1.2:54827265-54827284 | MS.gene50537:intron | 25.0% |
| ! | AAGTTATCTACAATGATCTA+TGG | - | chr1.2:54827871-54827890 | MS.gene50537:CDS | 25.0% |
| ! | AATCGAAATTCGAAGAAATT+AGG | + | chr1.2:54826580-54826599 | None:intergenic | 25.0% |
| ! | AATGTGTTAATTGATTAGGT+GGG | - | chr1.2:54827266-54827285 | MS.gene50537:intron | 25.0% |
| ! | ACCAAATGTGTTAATTGATT+AGG | - | chr1.2:54827262-54827281 | MS.gene50537:intron | 25.0% |
| ! | ACCTAATCAATTAACACATT+TGG | + | chr1.2:54827266-54827285 | None:intergenic | 25.0% |
| ! | ATCGAAATTCGAAGAAATTA+GGG | + | chr1.2:54826579-54826598 | None:intergenic | 25.0% |
| ! | ATTCCTATGATGAATTCATT+TGG | - | chr1.2:54827959-54827978 | MS.gene50537:CDS | 25.0% |
| ! | TATTTCACTGTTTAATGTTC+TGG | - | chr1.2:54827799-54827818 | MS.gene50537:intron | 25.0% |
| ! | TTATTTGTCATTGCAATTAG+AGG | - | chr1.2:54826994-54827013 | MS.gene50537:intron | 25.0% |
| ! | TTCCTATGATGAATTCATTT+GGG | - | chr1.2:54827960-54827979 | MS.gene50537:CDS | 25.0% |
| ! | TTCTGATAATAGTAGTAAAG+AGG | + | chr1.2:54826653-54826672 | None:intergenic | 25.0% |
| !! | CAAATATGTAATTTGCAGTT+AGG | - | chr1.2:54827464-54827483 | MS.gene50537:intron | 25.0% |
| !! | GATTTCTAGGTTGAAATTTA+GGG | - | chr1.2:54826969-54826988 | MS.gene50537:intron | 25.0% |
| !! | TTTCTGAATTGTGTGTTATT+TGG | - | chr1.2:54826852-54826871 | MS.gene50537:intron | 25.0% |
| !! | TTTGTTATAAATCTTCTCTG+TGG | - | chr1.2:54827308-54827327 | MS.gene50537:intron | 25.0% |
| !!! | GTGTTATTTGGTTTGAATTT+GGG | - | chr1.2:54826864-54826883 | MS.gene50537:intron | 25.0% |
| !!! | TGTGTTATTTGGTTTGAATT+TGG | - | chr1.2:54826863-54826882 | MS.gene50537:intron | 25.0% |
| !!! | TGTTGTTTAATTTGTCGATT+TGG | - | chr1.2:54826934-54826953 | MS.gene50537:intron | 25.0% |
| !!! | TTTGCTGATTTTTTCCTAAT+GGG | - | chr1.2:54827571-54827590 | MS.gene50537:intron | 25.0% |
| !!! | TTTTATTTCAATCGCACAAT+CGG | + | chr1.2:54827430-54827449 | None:intergenic | 25.0% |
| !!! | TTTTGCTGATTTTTTCCTAA+TGG | - | chr1.2:54827570-54827589 | MS.gene50537:intron | 25.0% |
| AAAGGAAAGAACTAACCAAT+AGG | + | chr1.2:54827349-54827368 | None:intergenic | 30.0% | |
| ACATGTTGAATTGAAGAAGT+CGG | - | chr1.2:54827212-54827231 | MS.gene50537:intron | 30.0% | |
| GGTAATCAACAAAGACATTT+AGG | - | chr1.2:54827015-54827034 | MS.gene50537:intron | 30.0% | |
| GTATACAGAGAAAGTAATTC+TGG | - | chr1.2:54827605-54827624 | MS.gene50537:CDS | 30.0% | |
| TTCTTTCCTTTCATTGAGAA+TGG | - | chr1.2:54827358-54827377 | MS.gene50537:intron | 30.0% | |
| ! | ATACTAGTTCTTATGGTCTT+TGG | - | chr1.2:54827738-54827757 | MS.gene50537:intron | 30.0% |
| ! | CGATTTCTAGGTTGAAATTT+AGG | - | chr1.2:54826968-54826987 | MS.gene50537:intron | 30.0% |
| ! | TACTAGTTCTTATGGTCTTT+GGG | - | chr1.2:54827739-54827758 | MS.gene50537:intron | 30.0% |
| ! | TTGCAGATTTTCTTTCCATT+GGG | - | chr1.2:54827847-54827866 | MS.gene50537:CDS | 30.0% |
| !! | AGAATTGCCTACTTTTATCT+GGG | - | chr1.2:54827546-54827565 | MS.gene50537:intron | 30.0% |
| !! | GTTGATGATGTCCAAATATA+AGG | + | chr1.2:54827995-54828014 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTAATGGGAATG+GGG | - | chr1.2:54827578-54827597 | MS.gene50537:intron | 30.0% |
| !!! | GATTTTTTCCTAATGGGAAT+GGG | - | chr1.2:54827577-54827596 | MS.gene50537:intron | 30.0% |
| !!! | TGATTTTTTCCTAATGGGAA+TGG | - | chr1.2:54827576-54827595 | MS.gene50537:intron | 30.0% |
| AGAAAGAAAGAAAGCGGAAA+TGG | + | chr1.2:54826776-54826795 | None:intergenic | 35.0% | |
| AGCCCAAATGAATTCATCAT+AGG | + | chr1.2:54827965-54827984 | None:intergenic | 35.0% | |
| AGTATAGCACCAAACAAGAA+GGG | + | chr1.2:54827723-54827742 | None:intergenic | 35.0% | |
| CAACAAAGACATTTAGGAAC+TGG | - | chr1.2:54827021-54827040 | MS.gene50537:intron | 35.0% | |
| GAACTTGAGTTTCGATTTCT+AGG | - | chr1.2:54826956-54826975 | MS.gene50537:intron | 35.0% | |
| GACTTCTTCAATTCAACATG+TGG | + | chr1.2:54827213-54827232 | None:intergenic | 35.0% | |
| GATTAATTACCTTCTGCTTG+CGG | - | chr1.2:54826679-54826698 | MS.gene50537:CDS | 35.0% | |
| GCAAAATCCCAGATAAAAGT+AGG | + | chr1.2:54827556-54827575 | None:intergenic | 35.0% | |
| GCAAGCAGAAGGTAATTAAT+CGG | + | chr1.2:54826680-54826699 | None:intergenic | 35.0% | |
| TAAATCTTCTCTGTGGTTAG+TGG | - | chr1.2:54827315-54827334 | MS.gene50537:intron | 35.0% | |
| TACAATGATCTATGGTTGCT+TGG | - | chr1.2:54827879-54827898 | MS.gene50537:CDS | 35.0% | |
| TAGTATAGCACCAAACAAGA+AGG | + | chr1.2:54827724-54827743 | None:intergenic | 35.0% | |
| TGAAAATAGTGAGCAAAGAC+AGG | + | chr1.2:54828023-54828042 | None:intergenic | 35.0% | |
| TTACACAAGCCAAAATAGCA+AGG | + | chr1.2:54827495-54827514 | None:intergenic | 35.0% | |
| TTGGCAGCAATTATATTCTG+TGG | - | chr1.2:54827898-54827917 | MS.gene50537:CDS | 35.0% | |
| ! | ATTGTAGATAACTTGCCCAA+TGG | + | chr1.2:54827865-54827884 | None:intergenic | 35.0% |
| ! | CGATGATGATGTAGACTTTA+CGG | + | chr1.2:54826407-54826426 | None:intergenic | 35.0% |
| ! | CTTGCAGATTTTCTTTCCAT+TGG | - | chr1.2:54827846-54827865 | MS.gene50537:CDS | 35.0% |
| ! | GGTTTGAATTTGGGATTGAT+TGG | - | chr1.2:54826873-54826892 | MS.gene50537:intron | 35.0% |
| ! | TCTGACTCTCTACACATTTT+GGG | - | chr1.2:54827662-54827681 | MS.gene50537:CDS | 35.0% |
| !! | GAGAATTGCCTACTTTTATC+TGG | - | chr1.2:54827545-54827564 | MS.gene50537:intron | 35.0% |
| !! | TGGTGCTATACTAGTTCTTA+TGG | - | chr1.2:54827731-54827750 | MS.gene50537:intron | 35.0% |
| !! | TTAGTGGAGTTTTGACCTAT+TGG | - | chr1.2:54827331-54827350 | MS.gene50537:intron | 35.0% |
| !!! | TAGGAGTTACCTTGCTATTT+TGG | - | chr1.2:54827483-54827502 | MS.gene50537:intron | 35.0% |
| GATGTAGACTTTACGGATGA+AGG | + | chr1.2:54826400-54826419 | None:intergenic | 40.0% | |
| GGCTATGATTTCAACTTCCT+TGG | - | chr1.2:54827696-54827715 | MS.gene50537:CDS | 40.0% | |
| GGCTTCTGTCTCCTTATATT+TGG | - | chr1.2:54827981-54828000 | MS.gene50537:CDS | 40.0% | |
| GTAGCGAAGAAAGTGGAAAT+GGG | + | chr1.2:54826483-54826502 | None:intergenic | 40.0% | |
| GTATAGCACCAAACAAGAAG+GGG | + | chr1.2:54827722-54827741 | None:intergenic | 40.0% | |
| TAATCACATGTGCTATGTGC+TGG | - | chr1.2:54827182-54827201 | MS.gene50537:intron | 40.0% | |
| TACAAAACCCCATTCCCATT+AGG | + | chr1.2:54827588-54827607 | None:intergenic | 40.0% | |
| TAGTGAGCAAAGACAGGAAA+AGG | + | chr1.2:54828017-54828036 | None:intergenic | 40.0% | |
| TCAGCACCATTCTCAATGAA+AGG | + | chr1.2:54827367-54827386 | None:intergenic | 40.0% | |
| TCTTGAACCAGTTTCCACAT+CGG | + | chr1.2:54826334-54826353 | None:intergenic | 40.0% | |
| ! | AGCTGTTATATTGACTGCTG+TGG | - | chr1.2:54827629-54827648 | MS.gene50537:CDS | 40.0% |
| ! | CTCTGACTCTCTACACATTT+TGG | - | chr1.2:54827661-54827680 | MS.gene50537:CDS | 40.0% |
| ! | TCAAGTTGTCTGTATCGTAC+AGG | + | chr1.2:54827930-54827949 | None:intergenic | 40.0% |
| ! | TGTTATATTGACTGCTGTGG+TGG | - | chr1.2:54827632-54827651 | MS.gene50537:CDS | 40.0% |
| !! | CTCTCGCTTTCTTTTGTTGT+TGG | - | chr1.2:54826710-54826729 | MS.gene50537:CDS | 40.0% |
| !! | TATGGTCTTTGGGATGATTC+AGG | - | chr1.2:54827749-54827768 | MS.gene50537:intron | 40.0% |
| AGGTGGGTGATGTTAAGACA+AGG | - | chr1.2:54827282-54827301 | MS.gene50537:intron | 45.0% | |
| CTTTACGGATGAAGGACCAT+CGG | + | chr1.2:54826392-54826411 | None:intergenic | 45.0% | |
| GAAAGTGGAAATGGGACGAA+CGG | + | chr1.2:54826475-54826494 | None:intergenic | 45.0% | |
| GGAAAAACCGATGTGGAAAC+TGG | - | chr1.2:54826324-54826343 | MS.gene50537:CDS | 45.0% | |
| GGTAGCGAAGAAAGTGGAAA+TGG | + | chr1.2:54826484-54826503 | None:intergenic | 45.0% | |
| TGGAATCGGAATCAACCCTA+CGG | - | chr1.2:54826303-54826322 | MS.gene50537:CDS | 45.0% | |
| TTGAGCTGTGCTTTCACTAG+CGG | - | chr1.2:54826734-54826753 | MS.gene50537:intron | 45.0% | |
| ! | ACATTTTGGGCTGCAAGTAG+AGG | - | chr1.2:54827675-54827694 | MS.gene50537:CDS | 45.0% |
| !!! | TCCACATCGGTTTTTCCGTA+GGG | + | chr1.2:54826321-54826340 | None:intergenic | 45.0% |
| !!! | TTCCACATCGGTTTTTCCGT+AGG | + | chr1.2:54826322-54826341 | None:intergenic | 45.0% |
| ACCCTACGGAAAAACCGATG+TGG | - | chr1.2:54826317-54826336 | MS.gene50537:CDS | 50.0% | |
| ATGAAGGACCATCGGAGTTC+GGG | + | chr1.2:54826384-54826403 | None:intergenic | 50.0% | |
| GAGTGAAAACCGCAAGCAGA+AGG | + | chr1.2:54826691-54826710 | None:intergenic | 50.0% | |
| GATGAAGGACCATCGGAGTT+CGG | + | chr1.2:54826385-54826404 | None:intergenic | 50.0% | |
| TCCACTTTCTTCGCTACCAC+CGG | - | chr1.2:54826486-54826505 | MS.gene50537:CDS | 50.0% | |
| TTCCTTGGCCCCTTCTTGTT+TGG | - | chr1.2:54827711-54827730 | MS.gene50537:intron | 50.0% | |
| ! | AAGCGCAACGCACTGATGAA+AGG | + | chr1.2:54826549-54826568 | None:intergenic | 50.0% |
| ! | AGCGCAACGCACTGATGAAA+GGG | + | chr1.2:54826548-54826567 | None:intergenic | 50.0% |
| ! | AGTTGTGCTGCTATGCAGCA+CGG | - | chr1.2:54827085-54827104 | MS.gene50537:intron | 50.0% |
| ! | GTGGCATTGAGACTGACACA+TGG | - | chr1.2:54827116-54827135 | MS.gene50537:intron | 50.0% |
| ATGCAGCACGGATACGGTAG+TGG | - | chr1.2:54827097-54827116 | MS.gene50537:intron | 55.0% | |
| CACCAAACAAGAAGGGGCCA+AGG | + | chr1.2:54827716-54827735 | None:intergenic | 55.0% | |
| GCTGCTATGCAGCACGGATA+CGG | - | chr1.2:54827091-54827110 | MS.gene50537:intron | 55.0% | |
| TCGAGCATCATCGGGTAGAG+AGG | + | chr1.2:54826357-54826376 | None:intergenic | 55.0% | |
| TCGGGGCTTTCGAGCATCAT+CGG | + | chr1.2:54826366-54826385 | None:intergenic | 55.0% | |
| TGAAGGACCATCGGAGTTCG+GGG | + | chr1.2:54826383-54826402 | None:intergenic | 55.0% | |
| CGGGGCTTTCGAGCATCATC+GGG | + | chr1.2:54826365-54826384 | None:intergenic | 60.0% | |
| CTACTCGCCACCATCGCTGT+CGG | - | chr1.2:54826435-54826454 | MS.gene50537:CDS | 60.0% | |
| GTAAAGAGCGAGACCAGCGC+CGG | + | chr1.2:54826508-54826527 | None:intergenic | 60.0% | |
| TCGAAAGCCCCGAACTCCGA+TGG | - | chr1.2:54826373-54826392 | MS.gene50537:CDS | 60.0% | |
| ! | GCCGGTGGTAGCGAAGAAAG+TGG | + | chr1.2:54826490-54826509 | None:intergenic | 60.0% |
| GGGACGAACGGTGACGACGA+CGG | + | chr1.2:54826463-54826482 | None:intergenic | 65.0% | |
| TTCTTCGCTACCACCGGCGC+TGG | - | chr1.2:54826492-54826511 | MS.gene50537:intron | 65.0% | |
| ! | AAGAGCGAGACCAGCGCCGG+TGG | + | chr1.2:54826505-54826524 | None:intergenic | 70.0% |
| !! | GACGACGGCGCCGACAGCGA+TGG | + | chr1.2:54826448-54826467 | None:intergenic | 75.0% |
| !! | GACGGCGCCGACAGCGATGG+TGG | + | chr1.2:54826445-54826464 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54826300 | 54828059 | 54826300 | ID=MS.gene50537 |
| chr1.2 | mRNA | 54826300 | 54828059 | 54826300 | ID=MS.gene50537.t1;Parent=MS.gene50537 |
| chr1.2 | exon | 54827804 | 54828059 | 54827804 | ID=MS.gene50537.t1.exon1;Parent=MS.gene50537.t1 |
| chr1.2 | CDS | 54827804 | 54828059 | 54827804 | ID=cds.MS.gene50537.t1;Parent=MS.gene50537.t1 |
| chr1.2 | exon | 54827604 | 54827717 | 54827604 | ID=MS.gene50537.t1.exon2;Parent=MS.gene50537.t1 |
| chr1.2 | CDS | 54827604 | 54827717 | 54827604 | ID=cds.MS.gene50537.t1;Parent=MS.gene50537.t1 |
| chr1.2 | exon | 54826589 | 54826746 | 54826589 | ID=MS.gene50537.t1.exon3;Parent=MS.gene50537.t1 |
| chr1.2 | CDS | 54826589 | 54826746 | 54826589 | ID=cds.MS.gene50537.t1;Parent=MS.gene50537.t1 |
| chr1.2 | exon | 54826300 | 54826506 | 54826300 | ID=MS.gene50537.t1.exon4;Parent=MS.gene50537.t1 |
| chr1.2 | CDS | 54826300 | 54826506 | 54826300 | ID=cds.MS.gene50537.t1;Parent=MS.gene50537.t1 |
| Gene Sequence |
| Protein sequence |
