Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49377.t1 | XP_003590585.1 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 7.00E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49377.t1 | Q9SA63 | 74.1 | 247 | 60 | 1 | 1 | 243 | 1 | 247 | 3.0e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49377.t1 | G7IDK0 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 5.1e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004517 | MS.gene49377 | PPI |
| MS.gene72356 | MS.gene49377 | PPI |
| MS.gene49377 | MS.gene047261 | PPI |
| MS.gene71997 | MS.gene49377 | PPI |
| MS.gene002831 | MS.gene49377 | PPI |
| MS.gene00933 | MS.gene49377 | PPI |
| MS.gene011576 | MS.gene49377 | PPI |
| MS.gene61279 | MS.gene49377 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49377.t1 | MTR_1g071430 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 1.52e-176 | 485 |
| MS.gene49377.t1 | MTR_7g095640 | 76.170 | 235 | 56 | 0 | 9 | 243 | 3 | 237 | 2.48e-115 | 330 |
| MS.gene49377.t1 | MTR_7g095510 | 59.483 | 232 | 94 | 0 | 8 | 239 | 2 | 233 | 1.49e-86 | 257 |
| MS.gene49377.t1 | MTR_7g095600 | 58.650 | 237 | 94 | 2 | 10 | 242 | 4 | 240 | 9.98e-86 | 255 |
| MS.gene49377.t1 | MTR_7g095530 | 56.034 | 232 | 102 | 0 | 8 | 239 | 2 | 233 | 2.12e-84 | 252 |
| MS.gene49377.t1 | MTR_1g110390 | 49.789 | 237 | 114 | 1 | 9 | 240 | 2 | 238 | 1.45e-76 | 231 |
| MS.gene49377.t1 | MTR_2g021130 | 50.855 | 234 | 110 | 3 | 12 | 244 | 28 | 257 | 8.39e-74 | 225 |
| MS.gene49377.t1 | MTR_7g095550 | 58.667 | 75 | 31 | 0 | 123 | 197 | 19 | 93 | 2.87e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49377.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene49377.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene49377.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene49377.t1 | AT3G63310 | 74.590 | 244 | 57 | 1 | 1 | 244 | 1 | 239 | 4.63e-129 | 365 |
| MS.gene49377.t1 | AT4G02690 | 74.286 | 245 | 59 | 2 | 1 | 241 | 1 | 245 | 3.91e-123 | 350 |
| MS.gene49377.t1 | AT4G02690 | 62.449 | 245 | 50 | 3 | 1 | 241 | 1 | 207 | 1.97e-90 | 266 |
| MS.gene49377.t1 | AT4G14730 | 56.957 | 230 | 98 | 1 | 10 | 238 | 3 | 232 | 1.12e-89 | 265 |
| MS.gene49377.t1 | AT4G15470 | 52.419 | 248 | 111 | 5 | 1 | 244 | 12 | 256 | 1.84e-81 | 244 |
Find 58 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGACTCTCTACACATTT+TGG | 0.130439 | 1.1:+53719650 | MS.gene49377:CDS |
| GGCTTCTGTCTCCTTATATT+TGG | 0.136616 | 1.1:+53719970 | MS.gene49377:CDS |
| ATACTAGTTCTTATGGTCTT+TGG | 0.193055 | 1.1:+53719727 | MS.gene49377:CDS |
| CTCTCGCTTTCGTTTGTTGT+TGG | 0.232029 | 1.1:+53718700 | MS.gene49377:CDS |
| TGGTGCTATACTAGTTCTTA+TGG | 0.241827 | 1.1:+53719720 | MS.gene49377:CDS |
| TACTAGTTCTTATGGTCTTT+GGG | 0.245956 | 1.1:+53719728 | MS.gene49377:CDS |
| TATGGTCTTTGGGATGATTC+AGG | 0.268186 | 1.1:+53719738 | MS.gene49377:CDS |
| TTCCTTGGCCCCTTCTTGTT+TGG | 0.270915 | 1.1:+53719700 | MS.gene49377:CDS |
| ATGAAGGACCATCGGAGTTC+GGG | 0.303827 | 1.1:-53718360 | None:intergenic |
| GTATACAGAGAAAGTAATTC+TGG | 0.310445 | 1.1:+53719594 | MS.gene49377:intron |
| GTTGATGATGTCCAAATATA+AGG | 0.321463 | 1.1:-53719981 | None:intergenic |
| ATTCCTATGATGAATTCATT+TGG | 0.330140 | 1.1:+53719948 | MS.gene49377:CDS |
| CGATGATGACGTAGACTTTA+CGG | 0.331741 | 1.1:-53718383 | None:intergenic |
| TTCCTATGATGAATTCATTT+GGG | 0.372763 | 1.1:+53719949 | MS.gene49377:CDS |
| AAGTTATCTACAATGATCTA+TGG | 0.395967 | 1.1:+53719860 | MS.gene49377:CDS |
| GGCTATGATTTCAACTTCCT+TGG | 0.415448 | 1.1:+53719685 | MS.gene49377:CDS |
| GATGAAGGACCATCGGAGTT+CGG | 0.419295 | 1.1:-53718361 | None:intergenic |
| GGTAGCGAAGAAAGTGGAAA+TGG | 0.434726 | 1.1:-53718460 | None:intergenic |
| TAGTGAGCAAAGACAGGAAA+AGG | 0.461448 | 1.1:-53720003 | None:intergenic |
| TACAATGATCTATGGTTGCT+TGG | 0.466219 | 1.1:+53719868 | MS.gene49377:CDS |
| TCGGGGCTTTCGAGCATCAT+CGG | 0.470230 | 1.1:-53718342 | None:intergenic |
| TTCTTCGCTACCACCGGCGC+TGG | 0.472313 | 1.1:+53718471 | MS.gene49377:CDS |
| AACTCAAGAAGATGTGGAAT+CGG | 0.480322 | 1.1:+53718268 | None:intergenic |
| GCAAGCAGAAGGTAATTAAT+CGG | 0.485670 | 1.1:-53718667 | None:intergenic |
| CGGGGCTTTCGAGCATCATC+GGG | 0.487087 | 1.1:-53718341 | None:intergenic |
| AGCGCAACGCACTGATGAAA+GGG | 0.488809 | 1.1:-53718524 | None:intergenic |
| AGCCCAAATGAATTCATCAT+AGG | 0.498521 | 1.1:-53719951 | None:intergenic |
| TGAAAATAGTGAGCAAAGAC+AGG | 0.506317 | 1.1:-53720009 | None:intergenic |
| AAGCGCAACGCACTGATGAA+AGG | 0.522068 | 1.1:-53718525 | None:intergenic |
| TAGTATAGCACCAAACAAGA+AGG | 0.529396 | 1.1:-53719710 | None:intergenic |
| GACGTAGACTTTACGGATGA+AGG | 0.537088 | 1.1:-53718376 | None:intergenic |
| TCCACTTTCTTCGCTACCAC+CGG | 0.539244 | 1.1:+53718465 | MS.gene49377:CDS |
| GAGTGAAAACCGCAAGCAGA+AGG | 0.540358 | 1.1:-53718678 | None:intergenic |
| GATTAATTACCTTCTGCTTG+CGG | 0.545443 | 1.1:+53718669 | MS.gene49377:CDS |
| TTGAGTTGTGCTTTCACTAG+CGG | 0.547559 | 1.1:+53718724 | MS.gene49377:CDS |
| TTCTGATAGTAGTAGTAAAG+AGG | 0.547927 | 1.1:-53718640 | None:intergenic |
| CACCAAACAAGAAGGGGCCA+AGG | 0.548467 | 1.1:-53719702 | None:intergenic |
| TCAAGTTGTCTGTATCGTAC+AGG | 0.553801 | 1.1:-53719916 | None:intergenic |
| TTGGCAGCAATTATATTCTG+TGG | 0.570347 | 1.1:+53719887 | MS.gene49377:CDS |
| GTAGCGAAGAAAGTGGAAAT+GGG | 0.571169 | 1.1:-53718459 | None:intergenic |
| TGTTATATTGACTGCTGTGG+TGG | 0.576783 | 1.1:+53719621 | MS.gene49377:CDS |
| AGTATAGCACCAAACAAGAA+GGG | 0.588101 | 1.1:-53719709 | None:intergenic |
| GACGGCGCCGACAGCGATGG+TGG | 0.596967 | 1.1:-53718421 | None:intergenic |
| ATTGTAGATAACTTGCCCAA+TGG | 0.603009 | 1.1:-53719851 | None:intergenic |
| AAGAGCGAGACCAGCGCCGG+TGG | 0.605231 | 1.1:-53718481 | None:intergenic |
| TCGAAAGCCCCGAACTCCGA+TGG | 0.608560 | 1.1:+53718352 | MS.gene49377:CDS |
| AGCTGTTATATTGACTGCTG+TGG | 0.612381 | 1.1:+53719618 | MS.gene49377:CDS |
| TCGAGCATCATCGGGTAGAG+AGG | 0.614144 | 1.1:-53718333 | None:intergenic |
| GACGACGGCGCCGACAGCGA+TGG | 0.625482 | 1.1:-53718424 | None:intergenic |
| TCTTGAACCAGTTTCCACAT+CGG | 0.636857 | 1.1:-53718310 | None:intergenic |
| GTAAAGAGCGAGACCAGCGC+CGG | 0.640236 | 1.1:-53718484 | None:intergenic |
| CTTTACGGATGAAGGACCAT+CGG | 0.645720 | 1.1:-53718368 | None:intergenic |
| CTACTCGCCACCATCGCTGT+CGG | 0.646355 | 1.1:+53718414 | MS.gene49377:CDS |
| TGGAATCGGAATCAACCCTA+CGG | 0.653157 | 1.1:+53718282 | MS.gene49377:CDS |
| GGGACGAACTGTGACGACGA+CGG | 0.653621 | 1.1:-53718439 | None:intergenic |
| GCCGGTGGTAGCGAAGAAAG+TGG | 0.667378 | 1.1:-53718466 | None:intergenic |
| GTATAGCACCAAACAAGAAG+GGG | 0.669417 | 1.1:-53719708 | None:intergenic |
| TGAAGGACCATCGGAGTTCG+GGG | 0.676066 | 1.1:-53718359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCGAAATTGAAAGAAATT+AGG | - | chr1.1:53718559-53718578 | None:intergenic | 20.0% |
| !! | ACAAAGAGAAATATTCATTT+AGG | + | chr1.1:53719004-53719023 | MS.gene49377:intron | 20.0% |
| !! | ATCGAAATTGAAAGAAATTA+GGG | - | chr1.1:53718558-53718577 | None:intergenic | 20.0% |
| !! | TGTGTATTTGGTTAAAATTT+GGG | + | chr1.1:53718846-53718865 | MS.gene49377:intron | 20.0% |
| !! | TTTGATTCTGTAATAATTTG+AGG | + | chr1.1:53718890-53718909 | MS.gene49377:intron | 20.0% |
| !!! | AATTTCTAGGTTGAAATTTA+GGG | + | chr1.1:53718951-53718970 | MS.gene49377:intron | 20.0% |
| !!! | CTAACTAGAATTTAACATTT+TGG | + | chr1.1:53719040-53719059 | MS.gene49377:intron | 20.0% |
| !!! | GATTTGAATTTTTTGTTATC+TGG | + | chr1.1:53719376-53719395 | MS.gene49377:intron | 20.0% |
| !!! | TTTGCTTATTTTTTCCTAAT+GGG | + | chr1.1:53719560-53719579 | MS.gene49377:intron | 20.0% |
| !!! | TTTTGCTTATTTTTTCCTAA+TGG | + | chr1.1:53719559-53719578 | MS.gene49377:intron | 20.0% |
| !!! | TTTTTTTGTCATTGCAATTT+GGG | + | chr1.1:53718975-53718994 | MS.gene49377:intron | 20.0% |
| !!! | TTTTTTTTGTCATTGCAATT+TGG | + | chr1.1:53718974-53718993 | MS.gene49377:intron | 20.0% |
| ! | AAATGTGTTAATTGATTAGG+TGG | + | chr1.1:53719254-53719273 | MS.gene49377:intron | 25.0% |
| ! | AAGTTATCTACAATGATCTA+TGG | + | chr1.1:53719860-53719879 | MS.gene49377:CDS | 25.0% |
| ! | AATGTGTTAATTGATTAGGT+GGG | + | chr1.1:53719255-53719274 | MS.gene49377:intron | 25.0% |
| ! | ACCAAATGTGTTAATTGATT+AGG | + | chr1.1:53719251-53719270 | MS.gene49377:intron | 25.0% |
| ! | ACCTAATCAATTAACACATT+TGG | - | chr1.1:53719255-53719274 | None:intergenic | 25.0% |
| ! | AGAAATATTCATTTAGGAAC+TGG | + | chr1.1:53719010-53719029 | MS.gene49377:intron | 25.0% |
| ! | ATTCCTATGATGAATTCATT+TGG | + | chr1.1:53719948-53719967 | MS.gene49377:CDS | 25.0% |
| ! | GTGTGTATTTGGTTAAAATT+TGG | + | chr1.1:53718845-53718864 | MS.gene49377:intron | 25.0% |
| ! | TATTTCACTGTTTAATGTTC+TGG | + | chr1.1:53719788-53719807 | MS.gene49377:intron | 25.0% |
| ! | TTCCTATGATGAATTCATTT+GGG | + | chr1.1:53719949-53719968 | MS.gene49377:CDS | 25.0% |
| ! | TTGCTTTGATTGTAGTAATT+TGG | + | chr1.1:53718796-53718815 | MS.gene49377:intron | 25.0% |
| !! | CAATTTCTAGGTTGAAATTT+AGG | + | chr1.1:53718950-53718969 | MS.gene49377:intron | 25.0% |
| !! | TTTTCTGAATTGTGTGTATT+TGG | + | chr1.1:53718834-53718853 | MS.gene49377:intron | 25.0% |
| !!! | TATTTTTTCCTAATGGGAAT+GGG | + | chr1.1:53719566-53719585 | MS.gene49377:intron | 25.0% |
| !!! | TTATTTTTTCCTAATGGGAA+TGG | + | chr1.1:53719565-53719584 | MS.gene49377:intron | 25.0% |
| !!! | TTTGTTATTAATCTTCTCTG+TGG | + | chr1.1:53719297-53719316 | MS.gene49377:intron | 25.0% |
| !!! | TTTTATTTCAATCGCACAAT+CGG | - | chr1.1:53719419-53719438 | None:intergenic | 25.0% |
| AAAGGAAAGAACTAACCAAT+AGG | - | chr1.1:53719338-53719357 | None:intergenic | 30.0% | |
| ACATGTTGAATTGAAGAAGT+CGG | + | chr1.1:53719201-53719220 | MS.gene49377:intron | 30.0% | |
| GAAAAGAAAGAAAGCAGAAA+TGG | - | chr1.1:53718766-53718785 | None:intergenic | 30.0% | |
| GAACTTGAGTTTCAATTTCT+AGG | + | chr1.1:53718938-53718957 | MS.gene49377:intron | 30.0% | |
| GTATACAGAGAAAGTAATTC+TGG | + | chr1.1:53719594-53719613 | MS.gene49377:intron | 30.0% | |
| TTATTAATCTTCTCTGTGGT+TGG | + | chr1.1:53719301-53719320 | MS.gene49377:intron | 30.0% | |
| TTCTGATAGTAGTAGTAAAG+AGG | - | chr1.1:53718643-53718662 | None:intergenic | 30.0% | |
| TTCTTTCCTTTCATTGAGAA+TGG | + | chr1.1:53719347-53719366 | MS.gene49377:intron | 30.0% | |
| ! | ATACTAGTTCTTATGGTCTT+TGG | + | chr1.1:53719727-53719746 | MS.gene49377:CDS | 30.0% |
| ! | GGTTAAAATTTGGGATTGAT+TGG | + | chr1.1:53718855-53718874 | MS.gene49377:intron | 30.0% |
| ! | TACTAGTTCTTATGGTCTTT+GGG | + | chr1.1:53719728-53719747 | MS.gene49377:CDS | 30.0% |
| ! | TTGCAGATTTTCTTTCCATT+GGG | + | chr1.1:53719836-53719855 | MS.gene49377:intron | 30.0% |
| !! | AGAATTGCCTACTTTTATCT+GGG | + | chr1.1:53719535-53719554 | MS.gene49377:intron | 30.0% |
| !! | GTTGATGATGTCCAAATATA+AGG | - | chr1.1:53719984-53720003 | None:intergenic | 30.0% |
| !! | TGTTGTTTAATTTGTCGACT+TGG | + | chr1.1:53718916-53718935 | MS.gene49377:intron | 30.0% |
| !!! | ATTTTTTCCTAATGGGAATG+GGG | + | chr1.1:53719567-53719586 | MS.gene49377:intron | 30.0% |
| AGCCCAAATGAATTCATCAT+AGG | - | chr1.1:53719954-53719973 | None:intergenic | 35.0% | |
| AGTATAGCACCAAACAAGAA+GGG | - | chr1.1:53719712-53719731 | None:intergenic | 35.0% | |
| GACTTCTTCAATTCAACATG+TGG | - | chr1.1:53719202-53719221 | None:intergenic | 35.0% | |
| GATTAATTACCTTCTGCTTG+CGG | + | chr1.1:53718669-53718688 | MS.gene49377:CDS | 35.0% | |
| GCAAAATCCCAGATAAAAGT+AGG | - | chr1.1:53719545-53719564 | None:intergenic | 35.0% | |
| GCAAGCAGAAGGTAATTAAT+CGG | - | chr1.1:53718670-53718689 | None:intergenic | 35.0% | |
| TACAATGATCTATGGTTGCT+TGG | + | chr1.1:53719868-53719887 | MS.gene49377:CDS | 35.0% | |
| TAGTATAGCACCAAACAAGA+AGG | - | chr1.1:53719713-53719732 | None:intergenic | 35.0% | |
| TGAAAATAGTGAGCAAAGAC+AGG | - | chr1.1:53720012-53720031 | None:intergenic | 35.0% | |
| TTACACAAGCCAAAATAGCA+AGG | - | chr1.1:53719484-53719503 | None:intergenic | 35.0% | |
| TTGGCAGCAATTATATTCTG+TGG | + | chr1.1:53719887-53719906 | MS.gene49377:CDS | 35.0% | |
| ! | ATTGTAGATAACTTGCCCAA+TGG | - | chr1.1:53719854-53719873 | None:intergenic | 35.0% |
| ! | CTTGCAGATTTTCTTTCCAT+TGG | + | chr1.1:53719835-53719854 | MS.gene49377:intron | 35.0% |
| ! | TCTGACTCTCTACACATTTT+GGG | + | chr1.1:53719651-53719670 | MS.gene49377:CDS | 35.0% |
| !! | GAGAATTGCCTACTTTTATC+TGG | + | chr1.1:53719534-53719553 | MS.gene49377:intron | 35.0% |
| !! | TGGTGCTATACTAGTTCTTA+TGG | + | chr1.1:53719720-53719739 | MS.gene49377:CDS | 35.0% |
| !!! | TACGAGTTACCTTGCTATTT+TGG | + | chr1.1:53719472-53719491 | MS.gene49377:intron | 35.0% |
| GGCTATGATTTCAACTTCCT+TGG | + | chr1.1:53719685-53719704 | MS.gene49377:CDS | 40.0% | |
| GGCTTCTGTCTCCTTATATT+TGG | + | chr1.1:53719970-53719989 | MS.gene49377:CDS | 40.0% | |
| GTAGCGAAGAAAGTGGAAAT+GGG | - | chr1.1:53718462-53718481 | None:intergenic | 40.0% | |
| GTATAGCACCAAACAAGAAG+GGG | - | chr1.1:53719711-53719730 | None:intergenic | 40.0% | |
| TAATCACATGTGCTATGTGC+TGG | + | chr1.1:53719171-53719190 | MS.gene49377:intron | 40.0% | |
| TACAAAACCCCATTCCCATT+AGG | - | chr1.1:53719577-53719596 | None:intergenic | 40.0% | |
| TAGTGAGCAAAGACAGGAAA+AGG | - | chr1.1:53720006-53720025 | None:intergenic | 40.0% | |
| TCAGCACCATTCTCAATGAA+AGG | - | chr1.1:53719356-53719375 | None:intergenic | 40.0% | |
| TCTTGAACCAGTTTCCACAT+CGG | - | chr1.1:53718313-53718332 | None:intergenic | 40.0% | |
| TTAATCTTCTCTGTGGTTGG+TGG | + | chr1.1:53719304-53719323 | MS.gene49377:intron | 40.0% | |
| ! | AGCTGTTATATTGACTGCTG+TGG | + | chr1.1:53719618-53719637 | MS.gene49377:CDS | 40.0% |
| ! | CGATGATGACGTAGACTTTA+CGG | - | chr1.1:53718386-53718405 | None:intergenic | 40.0% |
| ! | CTCTGACTCTCTACACATTT+TGG | + | chr1.1:53719650-53719669 | MS.gene49377:CDS | 40.0% |
| ! | TCAAGTTGTCTGTATCGTAC+AGG | - | chr1.1:53719919-53719938 | None:intergenic | 40.0% |
| ! | TGTTATATTGACTGCTGTGG+TGG | + | chr1.1:53719621-53719640 | MS.gene49377:CDS | 40.0% |
| ! | TTGAGTTGTGCTTTCACTAG+CGG | + | chr1.1:53718724-53718743 | MS.gene49377:CDS | 40.0% |
| !! | TATGGTCTTTGGGATGATTC+AGG | + | chr1.1:53719738-53719757 | MS.gene49377:CDS | 40.0% |
| !! | TTGGTGGAGTTTTGACCTAT+TGG | + | chr1.1:53719320-53719339 | MS.gene49377:intron | 40.0% |
| AGGTGGGTGATGTTAAGACA+AGG | + | chr1.1:53719271-53719290 | MS.gene49377:intron | 45.0% | |
| CTTTACGGATGAAGGACCAT+CGG | - | chr1.1:53718371-53718390 | None:intergenic | 45.0% | |
| GACGTAGACTTTACGGATGA+AGG | - | chr1.1:53718379-53718398 | None:intergenic | 45.0% | |
| GGAAAAACCGATGTGGAAAC+TGG | + | chr1.1:53718303-53718322 | MS.gene49377:CDS | 45.0% | |
| GGTAGCGAAGAAAGTGGAAA+TGG | - | chr1.1:53718463-53718482 | None:intergenic | 45.0% | |
| TGGAATCGGAATCAACCCTA+CGG | + | chr1.1:53718282-53718301 | MS.gene49377:CDS | 45.0% | |
| ! | ACATTTTGGGCTGCAAGTAG+AGG | + | chr1.1:53719664-53719683 | MS.gene49377:CDS | 45.0% |
| !! | CTCTCGCTTTCGTTTGTTGT+TGG | + | chr1.1:53718700-53718719 | MS.gene49377:CDS | 45.0% |
| !!! | TCCACATCGGTTTTTCCGTA+GGG | - | chr1.1:53718300-53718319 | None:intergenic | 45.0% |
| !!! | TTCCACATCGGTTTTTCCGT+AGG | - | chr1.1:53718301-53718320 | None:intergenic | 45.0% |
| ACCCTACGGAAAAACCGATG+TGG | + | chr1.1:53718296-53718315 | MS.gene49377:CDS | 50.0% | |
| ATGAAGGACCATCGGAGTTC+GGG | - | chr1.1:53718363-53718382 | None:intergenic | 50.0% | |
| GAGTGAAAACCGCAAGCAGA+AGG | - | chr1.1:53718681-53718700 | None:intergenic | 50.0% | |
| GATGAAGGACCATCGGAGTT+CGG | - | chr1.1:53718364-53718383 | None:intergenic | 50.0% | |
| TCCACTTTCTTCGCTACCAC+CGG | + | chr1.1:53718465-53718484 | MS.gene49377:CDS | 50.0% | |
| TTCCTTGGCCCCTTCTTGTT+TGG | + | chr1.1:53719700-53719719 | MS.gene49377:CDS | 50.0% | |
| ! | AAGCGCAACGCACTGATGAA+AGG | - | chr1.1:53718528-53718547 | None:intergenic | 50.0% |
| ! | AGCGCAACGCACTGATGAAA+GGG | - | chr1.1:53718527-53718546 | None:intergenic | 50.0% |
| ! | AGTTGTGCTGCTATGCAGCA+CGG | + | chr1.1:53719074-53719093 | MS.gene49377:intron | 50.0% |
| ! | GTGGCATTGAGACTGACACA+TGG | + | chr1.1:53719105-53719124 | MS.gene49377:intron | 50.0% |
| ATGCAGCACGGATACGGTAG+TGG | + | chr1.1:53719086-53719105 | MS.gene49377:intron | 55.0% | |
| CACCAAACAAGAAGGGGCCA+AGG | - | chr1.1:53719705-53719724 | None:intergenic | 55.0% | |
| GCTGCTATGCAGCACGGATA+CGG | + | chr1.1:53719080-53719099 | MS.gene49377:intron | 55.0% | |
| TCGAGCATCATCGGGTAGAG+AGG | - | chr1.1:53718336-53718355 | None:intergenic | 55.0% | |
| TCGGGGCTTTCGAGCATCAT+CGG | - | chr1.1:53718345-53718364 | None:intergenic | 55.0% | |
| TGAAGGACCATCGGAGTTCG+GGG | - | chr1.1:53718362-53718381 | None:intergenic | 55.0% | |
| CGGGGCTTTCGAGCATCATC+GGG | - | chr1.1:53718344-53718363 | None:intergenic | 60.0% | |
| CTACTCGCCACCATCGCTGT+CGG | + | chr1.1:53718414-53718433 | MS.gene49377:CDS | 60.0% | |
| GGGACGAACTGTGACGACGA+CGG | - | chr1.1:53718442-53718461 | None:intergenic | 60.0% | |
| GTAAAGAGCGAGACCAGCGC+CGG | - | chr1.1:53718487-53718506 | None:intergenic | 60.0% | |
| TCGAAAGCCCCGAACTCCGA+TGG | + | chr1.1:53718352-53718371 | MS.gene49377:CDS | 60.0% | |
| ! | GCCGGTGGTAGCGAAGAAAG+TGG | - | chr1.1:53718469-53718488 | None:intergenic | 60.0% |
| TTCTTCGCTACCACCGGCGC+TGG | + | chr1.1:53718471-53718490 | MS.gene49377:CDS | 65.0% | |
| ! | AAGAGCGAGACCAGCGCCGG+TGG | - | chr1.1:53718484-53718503 | None:intergenic | 70.0% |
| !! | GACGACGGCGCCGACAGCGA+TGG | - | chr1.1:53718427-53718446 | None:intergenic | 75.0% |
| !! | GACGGCGCCGACAGCGATGG+TGG | - | chr1.1:53718424-53718443 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53718279 | 53720048 | 53718279 | ID=MS.gene49377 |
| chr1.1 | mRNA | 53718279 | 53720048 | 53718279 | ID=MS.gene49377.t1;Parent=MS.gene49377 |
| chr1.1 | exon | 53718279 | 53718534 | 53718279 | ID=MS.gene49377.t1.exon1;Parent=MS.gene49377.t1 |
| chr1.1 | CDS | 53718279 | 53718534 | 53718279 | ID=cds.MS.gene49377.t1;Parent=MS.gene49377.t1 |
| chr1.1 | exon | 53718632 | 53718745 | 53718632 | ID=MS.gene49377.t1.exon2;Parent=MS.gene49377.t1 |
| chr1.1 | CDS | 53718632 | 53718745 | 53718632 | ID=cds.MS.gene49377.t1;Parent=MS.gene49377.t1 |
| chr1.1 | exon | 53719602 | 53719759 | 53719602 | ID=MS.gene49377.t1.exon3;Parent=MS.gene49377.t1 |
| chr1.1 | CDS | 53719602 | 53719759 | 53719602 | ID=cds.MS.gene49377.t1;Parent=MS.gene49377.t1 |
| chr1.1 | exon | 53719842 | 53720048 | 53719842 | ID=MS.gene49377.t1.exon4;Parent=MS.gene49377.t1 |
| chr1.1 | CDS | 53719842 | 53720048 | 53719842 | ID=cds.MS.gene49377.t1;Parent=MS.gene49377.t1 |
| Gene Sequence |
| Protein sequence |
