Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036189.t1 | XP_003590585.1 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 7.00E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036189.t1 | Q9SA63 | 74.1 | 247 | 60 | 1 | 1 | 243 | 1 | 247 | 3.0e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036189.t1 | G7IDK0 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 5.1e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011576 | MS.gene036189 | PPI |
| MS.gene036189 | MS.gene047261 | PPI |
| MS.gene61279 | MS.gene036189 | PPI |
| MS.gene004517 | MS.gene036189 | PPI |
| MS.gene002831 | MS.gene036189 | PPI |
| MS.gene72356 | MS.gene036189 | PPI |
| MS.gene71997 | MS.gene036189 | PPI |
| MS.gene00933 | MS.gene036189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036189.t1 | MTR_1g071430 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 1.52e-176 | 485 |
| MS.gene036189.t1 | MTR_7g095640 | 76.170 | 235 | 56 | 0 | 9 | 243 | 3 | 237 | 2.48e-115 | 330 |
| MS.gene036189.t1 | MTR_7g095510 | 59.483 | 232 | 94 | 0 | 8 | 239 | 2 | 233 | 1.49e-86 | 257 |
| MS.gene036189.t1 | MTR_7g095600 | 58.650 | 237 | 94 | 2 | 10 | 242 | 4 | 240 | 9.98e-86 | 255 |
| MS.gene036189.t1 | MTR_7g095530 | 56.034 | 232 | 102 | 0 | 8 | 239 | 2 | 233 | 2.12e-84 | 252 |
| MS.gene036189.t1 | MTR_1g110390 | 49.789 | 237 | 114 | 1 | 9 | 240 | 2 | 238 | 1.45e-76 | 231 |
| MS.gene036189.t1 | MTR_2g021130 | 50.855 | 234 | 110 | 3 | 12 | 244 | 28 | 257 | 8.39e-74 | 225 |
| MS.gene036189.t1 | MTR_7g095550 | 58.667 | 75 | 31 | 0 | 123 | 197 | 19 | 93 | 2.87e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036189.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene036189.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene036189.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene036189.t1 | AT3G63310 | 74.590 | 244 | 57 | 1 | 1 | 244 | 1 | 239 | 4.63e-129 | 365 |
| MS.gene036189.t1 | AT4G02690 | 74.286 | 245 | 59 | 2 | 1 | 241 | 1 | 245 | 3.91e-123 | 350 |
| MS.gene036189.t1 | AT4G02690 | 62.449 | 245 | 50 | 3 | 1 | 241 | 1 | 207 | 1.97e-90 | 266 |
| MS.gene036189.t1 | AT4G14730 | 56.957 | 230 | 98 | 1 | 10 | 238 | 3 | 232 | 1.12e-89 | 265 |
| MS.gene036189.t1 | AT4G15470 | 52.419 | 248 | 111 | 5 | 1 | 244 | 12 | 256 | 1.84e-81 | 244 |
Find 60 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGACTCTCTACACATTT+TGG | 0.130439 | 1.3:+51343435 | MS.gene036189:CDS |
| GGCTTCTGTCTCCTTATATT+TGG | 0.136616 | 1.3:+51343755 | MS.gene036189:CDS |
| ATACTAGTTCTTATGGTCTT+TGG | 0.193055 | 1.3:+51343512 | MS.gene036189:CDS |
| TGGTGCTATACTAGTTCTTA+TGG | 0.241827 | 1.3:+51343505 | MS.gene036189:CDS |
| TACTAGTTCTTATGGTCTTT+GGG | 0.245956 | 1.3:+51343513 | MS.gene036189:CDS |
| TATGGTCTTTGGGATGATTC+AGG | 0.268186 | 1.3:+51343523 | MS.gene036189:CDS |
| TTCCTTGGCCCCTTCTTGTT+TGG | 0.270915 | 1.3:+51343485 | MS.gene036189:CDS |
| ATGAAGGACCATCGGAGTTC+GGG | 0.303827 | 1.3:-51342116 | None:intergenic |
| GTATACAGAGAAAGTAATTC+TGG | 0.310445 | 1.3:+51343379 | MS.gene036189:intron |
| GTTGATGATGTCCAAATATA+AGG | 0.321463 | 1.3:-51343766 | None:intergenic |
| ATTCCTATGATGAATTCATT+TGG | 0.330140 | 1.3:+51343733 | MS.gene036189:CDS |
| CGATGATGACGTAGACTTTA+CGG | 0.331741 | 1.3:-51342139 | None:intergenic |
| TTCCTATGATGAATTCATTT+GGG | 0.372763 | 1.3:+51343734 | MS.gene036189:CDS |
| AAGTTATCTACAATGATCTA+TGG | 0.395967 | 1.3:+51343645 | MS.gene036189:CDS |
| GGCTATGATTTCAACTTCCT+TGG | 0.415448 | 1.3:+51343470 | MS.gene036189:CDS |
| GATGAAGGACCATCGGAGTT+CGG | 0.419295 | 1.3:-51342117 | None:intergenic |
| GGTGGCGAAGAAAGTGGAAA+TGG | 0.436335 | 1.3:-51342216 | None:intergenic |
| TCCACTTTCTTCGCCACCAC+CGG | 0.455204 | 1.3:+51342221 | MS.gene036189:CDS |
| TTCTTCGCCACCACCGGCGC+TGG | 0.461023 | 1.3:+51342227 | MS.gene036189:CDS |
| TAGTGAGCAAAGACAGGAAA+AGG | 0.461448 | 1.3:-51343788 | None:intergenic |
| TACAATGATCTATGGTTGCT+TGG | 0.466219 | 1.3:+51343653 | MS.gene036189:CDS |
| TCGGGGCTTTCGAGCATCAT+CGG | 0.470230 | 1.3:-51342098 | None:intergenic |
| AACTCAAGAAGATGTGGAAT+CGG | 0.480322 | 1.3:+51342024 | None:intergenic |
| GCAAGCAGAAGGTAATTAAT+CGG | 0.485670 | 1.3:-51342423 | None:intergenic |
| CGGGGCTTTCGAGCATCATC+GGG | 0.487087 | 1.3:-51342097 | None:intergenic |
| AGCGCAACGCACTGATGAAA+GGG | 0.488809 | 1.3:-51342280 | None:intergenic |
| AGCCCAAATGAATTCATCAT+AGG | 0.498521 | 1.3:-51343736 | None:intergenic |
| TGAAAATAGTGAGCAAAGAC+AGG | 0.506317 | 1.3:-51343794 | None:intergenic |
| AGCAAGACCAGCGCCGGTGG+TGG | 0.509063 | 1.3:-51342234 | None:intergenic |
| AAGCGCAACGCACTGATGAA+AGG | 0.522068 | 1.3:-51342281 | None:intergenic |
| CGGGTAGAGAGGTCTTGAAC+CGG | 0.523484 | 1.3:-51342078 | None:intergenic |
| TAGTATAGCACCAAACAAGA+AGG | 0.529396 | 1.3:-51343495 | None:intergenic |
| GACGTAGACTTTACGGATGA+AGG | 0.537088 | 1.3:-51342132 | None:intergenic |
| GAGTGAAAACCGCAAGCAGA+AGG | 0.540358 | 1.3:-51342434 | None:intergenic |
| GATTAATTACCTTCTGCTTG+CGG | 0.545443 | 1.3:+51342425 | MS.gene036189:CDS |
| TTGAGTTGTGCTTTCACTAG+CGG | 0.547559 | 1.3:+51342480 | MS.gene036189:CDS |
| TTCTGATAGTAGTAGTAAAG+AGG | 0.547927 | 1.3:-51342396 | None:intergenic |
| CACCAAACAAGAAGGGGCCA+AGG | 0.548467 | 1.3:-51343487 | None:intergenic |
| GTGGCGAAGAAAGTGGAAAT+GGG | 0.549615 | 1.3:-51342215 | None:intergenic |
| TCTTGAACCGGTTTCCACAT+CGG | 0.552788 | 1.3:-51342066 | None:intergenic |
| TCAAGTTGTCTGTATCGTAC+AGG | 0.553801 | 1.3:-51343701 | None:intergenic |
| CTACTCGCCACCATCGCTGT+TGG | 0.565616 | 1.3:+51342170 | MS.gene036189:CDS |
| TTGGCAGCAATTATATTCTG+TGG | 0.570347 | 1.3:+51343672 | MS.gene036189:CDS |
| GACGGCGCCAACAGCGATGG+TGG | 0.573460 | 1.3:-51342177 | None:intergenic |
| TGTTATATTGACTGCTGTGG+TGG | 0.576783 | 1.3:+51343406 | MS.gene036189:CDS |
| AAGAGCAAGACCAGCGCCGG+TGG | 0.581681 | 1.3:-51342237 | None:intergenic |
| GACGACGGCGCCAACAGCGA+TGG | 0.582170 | 1.3:-51342180 | None:intergenic |
| GCCGGTGGTGGCGAAGAAAG+TGG | 0.585120 | 1.3:-51342222 | None:intergenic |
| AGTATAGCACCAAACAAGAA+GGG | 0.588101 | 1.3:-51343494 | None:intergenic |
| GTAAAGAGCAAGACCAGCGC+CGG | 0.599929 | 1.3:-51342240 | None:intergenic |
| ATTGTAGATAACTTGCCCAA+TGG | 0.603009 | 1.3:-51343636 | None:intergenic |
| TCGAAAGCCCCGAACTCCGA+TGG | 0.608560 | 1.3:+51342108 | MS.gene036189:CDS |
| AGCTGTTATATTGACTGCTG+TGG | 0.612381 | 1.3:+51343403 | MS.gene036189:CDS |
| TCGAGCATCATCGGGTAGAG+AGG | 0.614144 | 1.3:-51342089 | None:intergenic |
| GAAAGTGGAAATGGGACGAA+CGG | 0.622665 | 1.3:-51342207 | None:intergenic |
| GGGACGAACGGTGACGACGA+CGG | 0.624706 | 1.3:-51342195 | None:intergenic |
| CTTTACGGATGAAGGACCAT+CGG | 0.645720 | 1.3:-51342124 | None:intergenic |
| TGGAATCGGAATCAACCCTA+CGG | 0.653157 | 1.3:+51342038 | MS.gene036189:CDS |
| GTATAGCACCAAACAAGAAG+GGG | 0.669417 | 1.3:-51343493 | None:intergenic |
| TGAAGGACCATCGGAGTTCG+GGG | 0.676066 | 1.3:-51342115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAGAGAAATATTTATTT+AGG | + | chr1.3:51342789-51342808 | MS.gene036189:intron | 15.0% |
| !! | AGAAATATTTATTTAGGAAA+TGG | + | chr1.3:51342795-51342814 | MS.gene036189:intron | 15.0% |
| !! | AATCGAAATTGAAAGAAATT+AGG | - | chr1.3:51342315-51342334 | None:intergenic | 20.0% |
| !! | ATCGAAATTGAAAGAAATTA+GGG | - | chr1.3:51342314-51342333 | None:intergenic | 20.0% |
| !! | ATTTGTCATTGTAACATTTA+GGG | + | chr1.3:51342759-51342778 | MS.gene036189:intron | 20.0% |
| !! | TATTTGTCATTGTAACATTT+AGG | + | chr1.3:51342758-51342777 | MS.gene036189:intron | 20.0% |
| !! | TTTGATTCTGTAATAATTTG+AGG | + | chr1.3:51342671-51342690 | MS.gene036189:intron | 20.0% |
| !!! | GATTTGAATTTTTTGTTATC+TGG | + | chr1.3:51343161-51343180 | MS.gene036189:intron | 20.0% |
| !!! | TTGAATTATTGTGTGTTATT+TGG | + | chr1.3:51342615-51342634 | MS.gene036189:intron | 20.0% |
| ! | AAATGTGTTAATTGATTAGG+TGG | + | chr1.3:51343039-51343058 | MS.gene036189:intron | 25.0% |
| ! | AAGTTATCTACAATGATCTA+TGG | + | chr1.3:51343645-51343664 | MS.gene036189:CDS | 25.0% |
| ! | AATGTGTTAATTGATTAGGT+GGG | + | chr1.3:51343040-51343059 | MS.gene036189:intron | 25.0% |
| ! | ACCAAATGTGTTAATTGATT+AGG | + | chr1.3:51343036-51343055 | MS.gene036189:intron | 25.0% |
| ! | ACCTAATCAATTAACACATT+TGG | - | chr1.3:51343040-51343059 | None:intergenic | 25.0% |
| ! | ATTCCTATGATGAATTCATT+TGG | + | chr1.3:51343733-51343752 | MS.gene036189:CDS | 25.0% |
| ! | TATTTCACTGTTTAATGTTC+TGG | + | chr1.3:51343573-51343592 | MS.gene036189:intron | 25.0% |
| ! | TTCCTATGATGAATTCATTT+GGG | + | chr1.3:51343734-51343753 | MS.gene036189:CDS | 25.0% |
| ! | TTTGTCATTGTAACATTTAG+GGG | + | chr1.3:51342760-51342779 | MS.gene036189:intron | 25.0% |
| !! | CAAATATGTAATTTGCAGTT+AGG | + | chr1.3:51343238-51343257 | MS.gene036189:intron | 25.0% |
| !! | CTAACTAGAATTTGACATTT+TGG | + | chr1.3:51342825-51342844 | MS.gene036189:intron | 25.0% |
| !! | TTTCTGAATTGTGTGTTATT+TGG | + | chr1.3:51342591-51342610 | MS.gene036189:intron | 25.0% |
| !! | TTTGTTATAAATCTTCTCTG+TGG | + | chr1.3:51343082-51343101 | MS.gene036189:intron | 25.0% |
| !!! | GTGTTATTTGGTTTGAATTT+GGG | + | chr1.3:51342627-51342646 | MS.gene036189:intron | 25.0% |
| !!! | TGTGTTATTTGGTTTGAATT+TGG | + | chr1.3:51342602-51342621 | MS.gene036189:intron | 25.0% |
| !!! | TTTGCTGATTTTTTCCTAAT+GGG | + | chr1.3:51343345-51343364 | MS.gene036189:intron | 25.0% |
| !!! | TTTTATTTCAATCGCACAAT+CGG | - | chr1.3:51343204-51343223 | None:intergenic | 25.0% |
| !!! | TTTTGCTGATTTTTTCCTAA+TGG | + | chr1.3:51343344-51343363 | MS.gene036189:intron | 25.0% |
| AAAGGAAAGAACTAACCAAT+AGG | - | chr1.3:51343123-51343142 | None:intergenic | 30.0% | |
| ACATGTTGAATTGAAGAAGT+CGG | + | chr1.3:51342986-51343005 | MS.gene036189:intron | 30.0% | |
| GAAAAGAAAGAAAGCAGAAA+TGG | - | chr1.3:51342522-51342541 | None:intergenic | 30.0% | |
| GTATACAGAGAAAGTAATTC+TGG | + | chr1.3:51343379-51343398 | MS.gene036189:intron | 30.0% | |
| TTCTGATAGTAGTAGTAAAG+AGG | - | chr1.3:51342399-51342418 | None:intergenic | 30.0% | |
| TTCTTTCCTTTCATTGAGAA+TGG | + | chr1.3:51343132-51343151 | MS.gene036189:intron | 30.0% | |
| ! | ATACTAGTTCTTATGGTCTT+TGG | + | chr1.3:51343512-51343531 | MS.gene036189:CDS | 30.0% |
| ! | GACTTCTAGGTTGAAATTTA+GGG | + | chr1.3:51342732-51342751 | MS.gene036189:intron | 30.0% |
| ! | TACTAGTTCTTATGGTCTTT+GGG | + | chr1.3:51343513-51343532 | MS.gene036189:CDS | 30.0% |
| ! | TTGCAGATTTTCTTTCCATT+GGG | + | chr1.3:51343621-51343640 | MS.gene036189:intron | 30.0% |
| !! | AGAATTGCCTACTTTTATCT+GGG | + | chr1.3:51343320-51343339 | MS.gene036189:intron | 30.0% |
| !! | GTTGATGATGTCCAAATATA+AGG | - | chr1.3:51343769-51343788 | None:intergenic | 30.0% |
| !! | TTAGTGGAATTTTGACCTAT+TGG | + | chr1.3:51343105-51343124 | MS.gene036189:intron | 30.0% |
| !!! | ATTTTTTCCTAATGGGAATG+GGG | + | chr1.3:51343352-51343371 | MS.gene036189:intron | 30.0% |
| !!! | GATTTTTTCCTAATGGGAAT+GGG | + | chr1.3:51343351-51343370 | MS.gene036189:intron | 30.0% |
| !!! | TGATTTTTTCCTAATGGGAA+TGG | + | chr1.3:51343350-51343369 | MS.gene036189:intron | 30.0% |
| AGCCCAAATGAATTCATCAT+AGG | - | chr1.3:51343739-51343758 | None:intergenic | 35.0% | |
| AGTATAGCACCAAACAAGAA+GGG | - | chr1.3:51343497-51343516 | None:intergenic | 35.0% | |
| GAACTTGAATTTGGACTTCT+AGG | + | chr1.3:51342719-51342738 | MS.gene036189:intron | 35.0% | |
| GACTTCTTCAATTCAACATG+TGG | - | chr1.3:51342987-51343006 | None:intergenic | 35.0% | |
| GATTAATTACCTTCTGCTTG+CGG | + | chr1.3:51342425-51342444 | MS.gene036189:CDS | 35.0% | |
| GCAAAATCCCAGATAAAAGT+AGG | - | chr1.3:51343330-51343349 | None:intergenic | 35.0% | |
| GCAAGCAGAAGGTAATTAAT+CGG | - | chr1.3:51342426-51342445 | None:intergenic | 35.0% | |
| TAAATCTTCTCTGTGGTTAG+TGG | + | chr1.3:51343089-51343108 | MS.gene036189:intron | 35.0% | |
| TACAATGATCTATGGTTGCT+TGG | + | chr1.3:51343653-51343672 | MS.gene036189:CDS | 35.0% | |
| TAGTATAGCACCAAACAAGA+AGG | - | chr1.3:51343498-51343517 | None:intergenic | 35.0% | |
| TGAAAATAGTGAGCAAAGAC+AGG | - | chr1.3:51343797-51343816 | None:intergenic | 35.0% | |
| TTACACAAGCCAAAATAGCA+AGG | - | chr1.3:51343269-51343288 | None:intergenic | 35.0% | |
| TTGGCAGCAATTATATTCTG+TGG | + | chr1.3:51343672-51343691 | MS.gene036189:CDS | 35.0% | |
| ! | ATTGTAGATAACTTGCCCAA+TGG | - | chr1.3:51343639-51343658 | None:intergenic | 35.0% |
| ! | CTTGCAGATTTTCTTTCCAT+TGG | + | chr1.3:51343620-51343639 | MS.gene036189:intron | 35.0% |
| ! | GGACTTCTAGGTTGAAATTT+AGG | + | chr1.3:51342731-51342750 | MS.gene036189:intron | 35.0% |
| ! | GGTTTGAATTTGGGATTGAT+TGG | + | chr1.3:51342636-51342655 | MS.gene036189:intron | 35.0% |
| ! | TCTGACTCTCTACACATTTT+GGG | + | chr1.3:51343436-51343455 | MS.gene036189:CDS | 35.0% |
| !! | GAGAATTGCCTACTTTTATC+TGG | + | chr1.3:51343319-51343338 | MS.gene036189:intron | 35.0% |
| !! | TGGTGCTATACTAGTTCTTA+TGG | + | chr1.3:51343505-51343524 | MS.gene036189:CDS | 35.0% |
| !! | TGTCGTTTAATTTGTCGACT+TGG | + | chr1.3:51342697-51342716 | MS.gene036189:intron | 35.0% |
| !!! | TAGGAGTTACCTTGCTATTT+TGG | + | chr1.3:51343257-51343276 | MS.gene036189:intron | 35.0% |
| GGCTATGATTTCAACTTCCT+TGG | + | chr1.3:51343470-51343489 | MS.gene036189:CDS | 40.0% | |
| GGCTTCTGTCTCCTTATATT+TGG | + | chr1.3:51343755-51343774 | MS.gene036189:CDS | 40.0% | |
| GTATAGCACCAAACAAGAAG+GGG | - | chr1.3:51343496-51343515 | None:intergenic | 40.0% | |
| TAATCACATGTGCTATGTGC+TGG | + | chr1.3:51342956-51342975 | MS.gene036189:intron | 40.0% | |
| TACAAAACCCCATTCCCATT+AGG | - | chr1.3:51343362-51343381 | None:intergenic | 40.0% | |
| TAGTGAGCAAAGACAGGAAA+AGG | - | chr1.3:51343791-51343810 | None:intergenic | 40.0% | |
| TCAGCACCATTCTCAATGAA+AGG | - | chr1.3:51343141-51343160 | None:intergenic | 40.0% | |
| ! | AGCTGTTATATTGACTGCTG+TGG | + | chr1.3:51343403-51343422 | MS.gene036189:CDS | 40.0% |
| ! | CGATGATGACGTAGACTTTA+CGG | - | chr1.3:51342142-51342161 | None:intergenic | 40.0% |
| ! | CTCTGACTCTCTACACATTT+TGG | + | chr1.3:51343435-51343454 | MS.gene036189:CDS | 40.0% |
| ! | TCAAGTTGTCTGTATCGTAC+AGG | - | chr1.3:51343704-51343723 | None:intergenic | 40.0% |
| ! | TGTTATATTGACTGCTGTGG+TGG | + | chr1.3:51343406-51343425 | MS.gene036189:CDS | 40.0% |
| ! | TTGAGTTGTGCTTTCACTAG+CGG | + | chr1.3:51342480-51342499 | MS.gene036189:CDS | 40.0% |
| !! | CTCTCGCTTTCTTTTGTTGT+TGG | + | chr1.3:51342456-51342475 | MS.gene036189:CDS | 40.0% |
| !! | GTCGACTTGGAACTTGAATT+TGG | + | chr1.3:51342710-51342729 | MS.gene036189:intron | 40.0% |
| !! | TATGGTCTTTGGGATGATTC+AGG | + | chr1.3:51343523-51343542 | MS.gene036189:CDS | 40.0% |
| AGGTGGGTGATGTTAAGACA+AGG | + | chr1.3:51343056-51343075 | MS.gene036189:intron | 45.0% | |
| CTTTACGGATGAAGGACCAT+CGG | - | chr1.3:51342127-51342146 | None:intergenic | 45.0% | |
| GAAAGTGGAAATGGGACGAA+CGG | - | chr1.3:51342210-51342229 | None:intergenic | 45.0% | |
| GACGTAGACTTTACGGATGA+AGG | - | chr1.3:51342135-51342154 | None:intergenic | 45.0% | |
| GGAAAAACCGATGTGGAAAC+CGG | + | chr1.3:51342059-51342078 | MS.gene036189:CDS | 45.0% | |
| GTGGCGAAGAAAGTGGAAAT+GGG | - | chr1.3:51342218-51342237 | None:intergenic | 45.0% | |
| TGGAATCGGAATCAACCCTA+CGG | + | chr1.3:51342038-51342057 | MS.gene036189:CDS | 45.0% | |
| ! | ACATTTTGGGCTGCAAGTAG+AGG | + | chr1.3:51343449-51343468 | MS.gene036189:CDS | 45.0% |
| ! | TCTTGAACCGGTTTCCACAT+CGG | - | chr1.3:51342069-51342088 | None:intergenic | 45.0% |
| !!! | TCCACATCGGTTTTTCCGTA+GGG | - | chr1.3:51342056-51342075 | None:intergenic | 45.0% |
| !!! | TTCCACATCGGTTTTTCCGT+AGG | - | chr1.3:51342057-51342076 | None:intergenic | 45.0% |
| ACCCTACGGAAAAACCGATG+TGG | + | chr1.3:51342052-51342071 | MS.gene036189:CDS | 50.0% | |
| ATGAAGGACCATCGGAGTTC+GGG | - | chr1.3:51342119-51342138 | None:intergenic | 50.0% | |
| GAGTGAAAACCGCAAGCAGA+AGG | - | chr1.3:51342437-51342456 | None:intergenic | 50.0% | |
| GATGAAGGACCATCGGAGTT+CGG | - | chr1.3:51342120-51342139 | None:intergenic | 50.0% | |
| GGTGGCGAAGAAAGTGGAAA+TGG | - | chr1.3:51342219-51342238 | None:intergenic | 50.0% | |
| TTCCTTGGCCCCTTCTTGTT+TGG | + | chr1.3:51343485-51343504 | MS.gene036189:CDS | 50.0% | |
| ! | AAGCGCAACGCACTGATGAA+AGG | - | chr1.3:51342284-51342303 | None:intergenic | 50.0% |
| ! | AGCGCAACGCACTGATGAAA+GGG | - | chr1.3:51342283-51342302 | None:intergenic | 50.0% |
| ! | AGTTGTGCTGCTATGCAGCA+CGG | + | chr1.3:51342859-51342878 | MS.gene036189:intron | 50.0% |
| ! | GTGGCATTGAGACTGACACA+TGG | + | chr1.3:51342890-51342909 | MS.gene036189:intron | 50.0% |
| ATGCAGCACGGATACGGTAG+TGG | + | chr1.3:51342871-51342890 | MS.gene036189:intron | 55.0% | |
| CACCAAACAAGAAGGGGCCA+AGG | - | chr1.3:51343490-51343509 | None:intergenic | 55.0% | |
| CGGGTAGAGAGGTCTTGAAC+CGG | - | chr1.3:51342081-51342100 | None:intergenic | 55.0% | |
| GCTGCTATGCAGCACGGATA+CGG | + | chr1.3:51342865-51342884 | MS.gene036189:intron | 55.0% | |
| GTAAAGAGCAAGACCAGCGC+CGG | - | chr1.3:51342243-51342262 | None:intergenic | 55.0% | |
| TCCACTTTCTTCGCCACCAC+CGG | + | chr1.3:51342221-51342240 | MS.gene036189:CDS | 55.0% | |
| TCGAGCATCATCGGGTAGAG+AGG | - | chr1.3:51342092-51342111 | None:intergenic | 55.0% | |
| TCGGGGCTTTCGAGCATCAT+CGG | - | chr1.3:51342101-51342120 | None:intergenic | 55.0% | |
| TGAAGGACCATCGGAGTTCG+GGG | - | chr1.3:51342118-51342137 | None:intergenic | 55.0% | |
| CGGGGCTTTCGAGCATCATC+GGG | - | chr1.3:51342100-51342119 | None:intergenic | 60.0% | |
| CTACTCGCCACCATCGCTGT+TGG | + | chr1.3:51342170-51342189 | MS.gene036189:CDS | 60.0% | |
| TCGAAAGCCCCGAACTCCGA+TGG | + | chr1.3:51342108-51342127 | MS.gene036189:CDS | 60.0% | |
| GGGACGAACGGTGACGACGA+CGG | - | chr1.3:51342198-51342217 | None:intergenic | 65.0% | |
| ! | AAGAGCAAGACCAGCGCCGG+TGG | - | chr1.3:51342240-51342259 | None:intergenic | 65.0% |
| ! | GCCGGTGGTGGCGAAGAAAG+TGG | - | chr1.3:51342225-51342244 | None:intergenic | 65.0% |
| GACGACGGCGCCAACAGCGA+TGG | - | chr1.3:51342183-51342202 | None:intergenic | 70.0% | |
| GACGGCGCCAACAGCGATGG+TGG | - | chr1.3:51342180-51342199 | None:intergenic | 70.0% | |
| TTCTTCGCCACCACCGGCGC+TGG | + | chr1.3:51342227-51342246 | MS.gene036189:CDS | 70.0% | |
| !! | AGCAAGACCAGCGCCGGTGG+TGG | - | chr1.3:51342237-51342256 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 51342035 | 51343833 | 51342035 | ID=MS.gene036189 |
| chr1.3 | mRNA | 51342035 | 51343833 | 51342035 | ID=MS.gene036189.t1;Parent=MS.gene036189 |
| chr1.3 | exon | 51342035 | 51342290 | 51342035 | ID=MS.gene036189.t1.exon1;Parent=MS.gene036189.t1 |
| chr1.3 | CDS | 51342035 | 51342290 | 51342035 | ID=cds.MS.gene036189.t1;Parent=MS.gene036189.t1 |
| chr1.3 | exon | 51342388 | 51342501 | 51342388 | ID=MS.gene036189.t1.exon2;Parent=MS.gene036189.t1 |
| chr1.3 | CDS | 51342388 | 51342501 | 51342388 | ID=cds.MS.gene036189.t1;Parent=MS.gene036189.t1 |
| chr1.3 | exon | 51343387 | 51343544 | 51343387 | ID=MS.gene036189.t1.exon3;Parent=MS.gene036189.t1 |
| chr1.3 | CDS | 51343387 | 51343544 | 51343387 | ID=cds.MS.gene036189.t1;Parent=MS.gene036189.t1 |
| chr1.3 | exon | 51343627 | 51343833 | 51343627 | ID=MS.gene036189.t1.exon4;Parent=MS.gene036189.t1 |
| chr1.3 | CDS | 51343627 | 51343833 | 51343627 | ID=cds.MS.gene036189.t1;Parent=MS.gene036189.t1 |
| Gene Sequence |
| Protein sequence |
