Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39943.t1 | XP_003590585.1 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 7.00E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39943.t1 | Q9SA63 | 74.1 | 247 | 60 | 1 | 1 | 243 | 1 | 247 | 3.0e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39943.t1 | G7IDK0 | 99.6 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 5.1e-121 | 443.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049599 | MS.gene39943 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene39943 | -0.827634 | 1.40E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene39943 | 0.815449 | 9.19E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene39943 | -0.830235 | 3.29E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene39943 | -0.808337 | 3.25E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene39943 | 0.816107 | 6.56E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene39943 | -0.81813 | 2.30E-52 | -1.69E-46 |
| MS.gene052420 | MS.gene39943 | -0.808305 | 3.31E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene39943 | -0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene053907 | MS.gene39943 | -0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene39943 | -0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene055816 | MS.gene39943 | 0.802734 | 4.87E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene39943 | -0.808829 | 2.56E-50 | -1.69E-46 |
| MS.gene059033 | MS.gene39943 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene39943 | -0.808077 | 3.70E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene39943 | -0.809113 | 2.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39943 | MS.gene71997 | PPI |
| MS.gene39943 | MS.gene61279 | PPI |
| MS.gene39943 | MS.gene011576 | PPI |
| MS.gene39943 | MS.gene72356 | PPI |
| MS.gene39943 | MS.gene047261 | PPI |
| MS.gene39943 | MS.gene00933 | PPI |
| MS.gene39943 | MS.gene004517 | PPI |
| MS.gene39943 | MS.gene002831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39943.t1 | MTR_1g071430 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 1.52e-176 | 485 |
| MS.gene39943.t1 | MTR_7g095640 | 76.170 | 235 | 56 | 0 | 9 | 243 | 3 | 237 | 2.48e-115 | 330 |
| MS.gene39943.t1 | MTR_7g095510 | 59.483 | 232 | 94 | 0 | 8 | 239 | 2 | 233 | 1.49e-86 | 257 |
| MS.gene39943.t1 | MTR_7g095600 | 58.650 | 237 | 94 | 2 | 10 | 242 | 4 | 240 | 9.98e-86 | 255 |
| MS.gene39943.t1 | MTR_7g095530 | 56.034 | 232 | 102 | 0 | 8 | 239 | 2 | 233 | 2.12e-84 | 252 |
| MS.gene39943.t1 | MTR_1g110390 | 49.789 | 237 | 114 | 1 | 9 | 240 | 2 | 238 | 1.45e-76 | 231 |
| MS.gene39943.t1 | MTR_2g021130 | 50.855 | 234 | 110 | 3 | 12 | 244 | 28 | 257 | 8.39e-74 | 225 |
| MS.gene39943.t1 | MTR_7g095550 | 58.667 | 75 | 31 | 0 | 123 | 197 | 19 | 93 | 2.87e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39943.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene39943.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene39943.t1 | AT1G03070 | 76.518 | 247 | 54 | 1 | 1 | 243 | 1 | 247 | 1.95e-137 | 386 |
| MS.gene39943.t1 | AT3G63310 | 74.590 | 244 | 57 | 1 | 1 | 244 | 1 | 239 | 4.63e-129 | 365 |
| MS.gene39943.t1 | AT4G02690 | 74.286 | 245 | 59 | 2 | 1 | 241 | 1 | 245 | 3.91e-123 | 350 |
| MS.gene39943.t1 | AT4G02690 | 62.449 | 245 | 50 | 3 | 1 | 241 | 1 | 207 | 1.97e-90 | 266 |
| MS.gene39943.t1 | AT4G14730 | 56.957 | 230 | 98 | 1 | 10 | 238 | 3 | 232 | 1.12e-89 | 265 |
| MS.gene39943.t1 | AT4G15470 | 52.419 | 248 | 111 | 5 | 1 | 244 | 12 | 256 | 1.84e-81 | 244 |
Find 58 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGACTCTCTACACATTT+TGG | 0.130439 | 1.4:+58448557 | MS.gene39943:CDS |
| GGCTTCTGTCTCCTTATATT+TGG | 0.136616 | 1.4:+58448877 | MS.gene39943:CDS |
| ATACTAGTTCTTATGGTCTT+TGG | 0.193055 | 1.4:+58448634 | MS.gene39943:CDS |
| CTCTCGCTTTCGTTTGTTGT+TGG | 0.232029 | 1.4:+58447562 | MS.gene39943:CDS |
| TGGTGCTATACTAGTTCTTA+TGG | 0.241827 | 1.4:+58448627 | MS.gene39943:CDS |
| TACTAGTTCTTATGGTCTTT+GGG | 0.245956 | 1.4:+58448635 | MS.gene39943:CDS |
| TATGGTCTTTGGGATGATTC+AGG | 0.268186 | 1.4:+58448645 | MS.gene39943:CDS |
| TTCCTTGGCCCCTTCTTGTT+TGG | 0.270915 | 1.4:+58448607 | MS.gene39943:CDS |
| ATGAAGGACCATCGGAGTTC+GGG | 0.303827 | 1.4:-58447222 | None:intergenic |
| GTTGATGATGTCCAAATATA+AGG | 0.321463 | 1.4:-58448888 | None:intergenic |
| ATTCCTATGATGAATTCATT+TGG | 0.330140 | 1.4:+58448855 | MS.gene39943:CDS |
| CGATGATGACGTAGACTTTA+CGG | 0.331741 | 1.4:-58447245 | None:intergenic |
| GTATGCAGAGAAAGTTATTC+TGG | 0.331873 | 1.4:+58448501 | MS.gene39943:intron |
| TTCCTATGATGAATTCATTT+GGG | 0.372763 | 1.4:+58448856 | MS.gene39943:CDS |
| AAGTTATCTACAATGATCTA+TGG | 0.395967 | 1.4:+58448767 | MS.gene39943:CDS |
| GGCTATGATTTCAACTTCCT+TGG | 0.415448 | 1.4:+58448592 | MS.gene39943:CDS |
| GATGAAGGACCATCGGAGTT+CGG | 0.419295 | 1.4:-58447223 | None:intergenic |
| GGTAGCGAAGAAAGTTGAAA+TGG | 0.446053 | 1.4:-58447322 | None:intergenic |
| TAGTGAGCAAAGACAGGAAA+AGG | 0.461448 | 1.4:-58448910 | None:intergenic |
| TACAATGATCTATGGTTGCT+TGG | 0.466219 | 1.4:+58448775 | MS.gene39943:CDS |
| TCGGGGCTTTCGAGCATCAT+CGG | 0.470230 | 1.4:-58447204 | None:intergenic |
| AACTCAAGAAGATGTGGAAT+CGG | 0.480322 | 1.4:+58447130 | None:intergenic |
| CGGGGCTTTCGAGCATCATC+GGG | 0.487087 | 1.4:-58447203 | None:intergenic |
| AGCGCAACGCACTGATGAAA+GGG | 0.488809 | 1.4:-58447386 | None:intergenic |
| TTCTTCGCTACCACCGGCGC+TGG | 0.492428 | 1.4:+58447333 | MS.gene39943:CDS |
| GCTAGCAGAAGGTAATTAAT+CGG | 0.497635 | 1.4:-58447529 | None:intergenic |
| AGCCCAAATGAATTCATCAT+AGG | 0.498521 | 1.4:-58448858 | None:intergenic |
| TGAAAATAGTGAGCAAAGAC+AGG | 0.506317 | 1.4:-58448916 | None:intergenic |
| AAGCGCAACGCACTGATGAA+AGG | 0.522068 | 1.4:-58447387 | None:intergenic |
| TCAACTTTCTTCGCTACCAC+CGG | 0.522481 | 1.4:+58447327 | MS.gene39943:CDS |
| CGGGTAGAGAGGTCTTGAAC+CGG | 0.523484 | 1.4:-58447184 | None:intergenic |
| TAGTATAGCACCAAACAAGA+AGG | 0.529396 | 1.4:-58448617 | None:intergenic |
| GACGTAGACTTTACGGATGA+AGG | 0.537088 | 1.4:-58447238 | None:intergenic |
| TTCTGATAGTAGTAGTAAAG+AGG | 0.547927 | 1.4:-58447502 | None:intergenic |
| CACCAAACAAGAAGGGGCCA+AGG | 0.548467 | 1.4:-58448609 | None:intergenic |
| TCTTGAACCGGTTTCCACAT+CGG | 0.552788 | 1.4:-58447172 | None:intergenic |
| TTGGCAGCAATTATATTCTG+TGG | 0.570347 | 1.4:+58448794 | MS.gene39943:CDS |
| GAGTGAAAACCGCTAGCAGA+AGG | 0.571713 | 1.4:-58447540 | None:intergenic |
| TGTTATATTGACTGCTGTGG+TGG | 0.576783 | 1.4:+58448528 | MS.gene39943:CDS |
| GTAGCGAAGAAAGTTGAAAT+GGG | 0.579750 | 1.4:-58447321 | None:intergenic |
| AGTATAGCACCAAACAAGAA+GGG | 0.588101 | 1.4:-58448616 | None:intergenic |
| GATTAATTACCTTCTGCTAG+CGG | 0.589336 | 1.4:+58447531 | MS.gene39943:CDS |
| TTGAGCTGTGCTTTCACTAG+CGG | 0.591331 | 1.4:+58447586 | MS.gene39943:CDS |
| GACGGCGCCGACAGCGATGG+TGG | 0.596967 | 1.4:-58447283 | None:intergenic |
| ATTGTAGATAACTTGCCCAA+TGG | 0.603009 | 1.4:-58448758 | None:intergenic |
| AAGAGCGAGACCAGCGCCGG+TGG | 0.605231 | 1.4:-58447343 | None:intergenic |
| TCGAAAGCCCCGAACTCCGA+TGG | 0.608560 | 1.4:+58447214 | MS.gene39943:CDS |
| AGCTGTTATATTGACTGCTG+TGG | 0.612381 | 1.4:+58448525 | MS.gene39943:CDS |
| TCGAGCATCATCGGGTAGAG+AGG | 0.614144 | 1.4:-58447195 | None:intergenic |
| GAAAGTTGAAATGGGACGAA+CGG | 0.620369 | 1.4:-58447313 | None:intergenic |
| GGGACGAACGGTGACGACGA+CGG | 0.624706 | 1.4:-58447301 | None:intergenic |
| GACGACGGCGCCGACAGCGA+TGG | 0.625482 | 1.4:-58447286 | None:intergenic |
| GTAAAGAGCGAGACCAGCGC+CGG | 0.640236 | 1.4:-58447346 | None:intergenic |
| CTTTACGGATGAAGGACCAT+CGG | 0.645720 | 1.4:-58447230 | None:intergenic |
| CTACTCGCCACCATCGCTGT+CGG | 0.646355 | 1.4:+58447276 | MS.gene39943:CDS |
| TGGAATCGGAATCAACCCTA+CGG | 0.653157 | 1.4:+58447144 | MS.gene39943:CDS |
| GTATAGCACCAAACAAGAAG+GGG | 0.669417 | 1.4:-58448615 | None:intergenic |
| TGAAGGACCATCGGAGTTCG+GGG | 0.676066 | 1.4:-58447221 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCGAAATTGAAAGAAATT+AGG | - | chr1.4:58447421-58447440 | None:intergenic | 20.0% |
| !! | ACAAAGAGAAATATTCATTT+AGG | + | chr1.4:58447883-58447902 | MS.gene39943:intron | 20.0% |
| !! | ATCGAAATTGAAAGAAATTA+GGG | - | chr1.4:58447420-58447439 | None:intergenic | 20.0% |
| !! | TGTGTATTTGGTTAAAATTT+GGG | + | chr1.4:58447724-58447743 | MS.gene39943:intron | 20.0% |
| !! | TTTGATTCTGTAATAATTTG+AGG | + | chr1.4:58447768-58447787 | MS.gene39943:intron | 20.0% |
| !!! | AATTTCTAGGTTGAAATTTA+GGG | + | chr1.4:58447829-58447848 | MS.gene39943:intron | 20.0% |
| !!! | GATTTCAATTTTTTGTTATC+TGG | + | chr1.4:58448285-58448304 | MS.gene39943:intron | 20.0% |
| !!! | TAACTAGAATTTGACATTTT+AGG | + | chr1.4:58447920-58447939 | MS.gene39943:intron | 20.0% |
| !!! | TTTGTTATAAATCTTTTCTG+TGG | + | chr1.4:58448206-58448225 | MS.gene39943:intron | 20.0% |
| !!! | TTTTGTTTTAATCACACAAT+CGG | - | chr1.4:58448327-58448346 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTCATTGCAATTT+GGG | + | chr1.4:58447854-58447873 | MS.gene39943:intron | 20.0% |
| !!! | TTTTTTTTGTCATTGCAATT+TGG | + | chr1.4:58447853-58447872 | MS.gene39943:intron | 20.0% |
| ! | AAGTTATCTACAATGATCTA+TGG | + | chr1.4:58448767-58448786 | MS.gene39943:CDS | 25.0% |
| ! | AGAAATATTCATTTAGGAAC+TGG | + | chr1.4:58447889-58447908 | MS.gene39943:intron | 25.0% |
| ! | ATATGTGTTAATTGATTAGG+TGG | + | chr1.4:58448163-58448182 | MS.gene39943:intron | 25.0% |
| ! | ATTCCTATGATGAATTCATT+TGG | + | chr1.4:58448855-58448874 | MS.gene39943:CDS | 25.0% |
| ! | CGAATATGTGTTAATTGATT+AGG | + | chr1.4:58448160-58448179 | MS.gene39943:intron | 25.0% |
| ! | GTGTGTATTTGGTTAAAATT+TGG | + | chr1.4:58447723-58447742 | MS.gene39943:intron | 25.0% |
| ! | TATGTGTTAATTGATTAGGT+GGG | + | chr1.4:58448164-58448183 | MS.gene39943:intron | 25.0% |
| ! | TATTTAACCGTTTAATGTTC+TGG | + | chr1.4:58448695-58448714 | MS.gene39943:intron | 25.0% |
| ! | TTATTTCCTTTCATTGAGAA+TGG | + | chr1.4:58448256-58448275 | MS.gene39943:intron | 25.0% |
| ! | TTCCTATGATGAATTCATTT+GGG | + | chr1.4:58448856-58448875 | MS.gene39943:CDS | 25.0% |
| !! | CAAATTTGTAATTTGCAGTT+AGG | + | chr1.4:58448361-58448380 | MS.gene39943:intron | 25.0% |
| !! | CAATTTCTAGGTTGAAATTT+AGG | + | chr1.4:58447828-58447847 | MS.gene39943:intron | 25.0% |
| !! | TAAATCTTTTCTGTGGTTAT+TGG | + | chr1.4:58448213-58448232 | MS.gene39943:intron | 25.0% |
| !! | TTTGCTGAATTTTTCCTAAT+GGG | + | chr1.4:58448468-58448487 | MS.gene39943:intron | 25.0% |
| !! | TTTTCTGAATTGTGTGTATT+TGG | + | chr1.4:58447712-58447731 | MS.gene39943:intron | 25.0% |
| !! | TTTTGCTGAATTTTTCCTAA+TGG | + | chr1.4:58448467-58448486 | MS.gene39943:intron | 25.0% |
| AAAGGAAATAACTAACCAGT+AGG | - | chr1.4:58448247-58448266 | None:intergenic | 30.0% | |
| AATGTCACCAGAACATTAAA+CGG | - | chr1.4:58448705-58448724 | None:intergenic | 30.0% | |
| AGAAAGAAAGAAAGCAGAAA+TGG | - | chr1.4:58447628-58447647 | None:intergenic | 30.0% | |
| GAACTTGAGTTTCAATTTCT+AGG | + | chr1.4:58447816-58447835 | MS.gene39943:intron | 30.0% | |
| TAGACGAAAATTCAACAAAG+AGG | - | chr1.4:58447454-58447473 | None:intergenic | 30.0% | |
| TTCTGATAGTAGTAGTAAAG+AGG | - | chr1.4:58447505-58447524 | None:intergenic | 30.0% | |
| ! | AATTTTTCCTAATGGGAATG+GGG | + | chr1.4:58448475-58448494 | MS.gene39943:intron | 30.0% |
| ! | ATACTAGTTCTTATGGTCTT+TGG | + | chr1.4:58448634-58448653 | MS.gene39943:CDS | 30.0% |
| ! | GAATTTTTCCTAATGGGAAT+GGG | + | chr1.4:58448474-58448493 | MS.gene39943:intron | 30.0% |
| ! | GGTTAAAATTTGGGATTGAT+TGG | + | chr1.4:58447733-58447752 | MS.gene39943:intron | 30.0% |
| ! | TACTAGTTCTTATGGTCTTT+GGG | + | chr1.4:58448635-58448654 | MS.gene39943:CDS | 30.0% |
| ! | TGAATTTTTCCTAATGGGAA+TGG | + | chr1.4:58448473-58448492 | MS.gene39943:intron | 30.0% |
| ! | TTGCAGATTTTCTTTCCATT+GGG | + | chr1.4:58448743-58448762 | MS.gene39943:intron | 30.0% |
| !! | AGAATTGCCTACTTTTATGT+GGG | + | chr1.4:58448443-58448462 | MS.gene39943:intron | 30.0% |
| !! | GTTGATGATGTCCAAATATA+AGG | - | chr1.4:58448891-58448910 | None:intergenic | 30.0% |
| !! | TGTTGTTTAATTTGTCGACT+TGG | + | chr1.4:58447794-58447813 | MS.gene39943:intron | 30.0% |
| !!! | TAGGAGTTACATTGCTATTT+TGG | + | chr1.4:58448380-58448399 | MS.gene39943:intron | 30.0% |
| AGCCCAAATGAATTCATCAT+AGG | - | chr1.4:58448861-58448880 | None:intergenic | 35.0% | |
| AGTATAGCACCAAACAAGAA+GGG | - | chr1.4:58448619-58448638 | None:intergenic | 35.0% | |
| GATTAATTACCTTCTGCTAG+CGG | + | chr1.4:58447531-58447550 | MS.gene39943:CDS | 35.0% | |
| GCAAAAACCCACATAAAAGT+AGG | - | chr1.4:58448453-58448472 | None:intergenic | 35.0% | |
| GCTAGCAGAAGGTAATTAAT+CGG | - | chr1.4:58447532-58447551 | None:intergenic | 35.0% | |
| GTAGCGAAGAAAGTTGAAAT+GGG | - | chr1.4:58447324-58447343 | None:intergenic | 35.0% | |
| GTATGCAGAGAAAGTTATTC+TGG | + | chr1.4:58448501-58448520 | MS.gene39943:intron | 35.0% | |
| TACAATGATCTATGGTTGCT+TGG | + | chr1.4:58448775-58448794 | MS.gene39943:CDS | 35.0% | |
| TAGTATAGCACCAAACAAGA+AGG | - | chr1.4:58448620-58448639 | None:intergenic | 35.0% | |
| TGAAAATAGTGAGCAAAGAC+AGG | - | chr1.4:58448919-58448938 | None:intergenic | 35.0% | |
| TTGGCAGCAATTATATTCTG+TGG | + | chr1.4:58448794-58448813 | MS.gene39943:CDS | 35.0% | |
| ! | ATTGTAGATAACTTGCCCAA+TGG | - | chr1.4:58448761-58448780 | None:intergenic | 35.0% |
| ! | CTTGCAGATTTTCTTTCCAT+TGG | + | chr1.4:58448742-58448761 | MS.gene39943:intron | 35.0% |
| ! | TCTGACTCTCTACACATTTT+GGG | + | chr1.4:58448558-58448577 | MS.gene39943:CDS | 35.0% |
| !! | GAGAATTGCCTACTTTTATG+TGG | + | chr1.4:58448442-58448461 | MS.gene39943:intron | 35.0% |
| !! | TGGTGCTATACTAGTTCTTA+TGG | + | chr1.4:58448627-58448646 | MS.gene39943:CDS | 35.0% |
| !! | TTATTGGAGTTTTGACCTAC+TGG | + | chr1.4:58448229-58448248 | MS.gene39943:intron | 35.0% |
| ATACAAACCCCATTCCCATT+AGG | - | chr1.4:58448485-58448504 | None:intergenic | 40.0% | |
| GAAAGTTGAAATGGGACGAA+CGG | - | chr1.4:58447316-58447335 | None:intergenic | 40.0% | |
| GGCTATGATTTCAACTTCCT+TGG | + | chr1.4:58448592-58448611 | MS.gene39943:CDS | 40.0% | |
| GGCTTCTGTCTCCTTATATT+TGG | + | chr1.4:58448877-58448896 | MS.gene39943:CDS | 40.0% | |
| GGTAGCGAAGAAAGTTGAAA+TGG | - | chr1.4:58447325-58447344 | None:intergenic | 40.0% | |
| GTATAGCACCAAACAAGAAG+GGG | - | chr1.4:58448618-58448637 | None:intergenic | 40.0% | |
| TAGTGAGCAAAGACAGGAAA+AGG | - | chr1.4:58448913-58448932 | None:intergenic | 40.0% | |
| TCAGCACCATTCTCAATGAA+AGG | - | chr1.4:58448265-58448284 | None:intergenic | 40.0% | |
| TGTAATCACATGTGCTGTGT+TGG | + | chr1.4:58448058-58448077 | MS.gene39943:intron | 40.0% | |
| ! | AGCTGTTATATTGACTGCTG+TGG | + | chr1.4:58448525-58448544 | MS.gene39943:CDS | 40.0% |
| ! | CGATGATGACGTAGACTTTA+CGG | - | chr1.4:58447248-58447267 | None:intergenic | 40.0% |
| ! | CTCTGACTCTCTACACATTT+TGG | + | chr1.4:58448557-58448576 | MS.gene39943:CDS | 40.0% |
| ! | TGTTATATTGACTGCTGTGG+TGG | + | chr1.4:58448528-58448547 | MS.gene39943:CDS | 40.0% |
| !! | TATGGTCTTTGGGATGATTC+AGG | + | chr1.4:58448645-58448664 | MS.gene39943:CDS | 40.0% |
| CTTTACGGATGAAGGACCAT+CGG | - | chr1.4:58447233-58447252 | None:intergenic | 45.0% | |
| GACGTAGACTTTACGGATGA+AGG | - | chr1.4:58447241-58447260 | None:intergenic | 45.0% | |
| GGAAAAACCGATGTGGAAAC+CGG | + | chr1.4:58447165-58447184 | MS.gene39943:CDS | 45.0% | |
| TCAACTTTCTTCGCTACCAC+CGG | + | chr1.4:58447327-58447346 | MS.gene39943:CDS | 45.0% | |
| TCTGGTGACATTCTCAGTGT+GGG | + | chr1.4:58448713-58448732 | MS.gene39943:intron | 45.0% | |
| TGGAATCGGAATCAACCCTA+CGG | + | chr1.4:58447144-58447163 | MS.gene39943:CDS | 45.0% | |
| TTCTGGTGACATTCTCAGTG+TGG | + | chr1.4:58448712-58448731 | MS.gene39943:intron | 45.0% | |
| TTGAGCTGTGCTTTCACTAG+CGG | + | chr1.4:58447586-58447605 | MS.gene39943:CDS | 45.0% | |
| ! | ACATTTTGGGCTGCAAGTAG+AGG | + | chr1.4:58448571-58448590 | MS.gene39943:CDS | 45.0% |
| ! | AGTTGTGCTGCTATGAAGCA+CGG | + | chr1.4:58447954-58447973 | MS.gene39943:intron | 45.0% |
| ! | TCTTGAACCGGTTTCCACAT+CGG | - | chr1.4:58447175-58447194 | None:intergenic | 45.0% |
| !! | CTCTCGCTTTCGTTTGTTGT+TGG | + | chr1.4:58447562-58447581 | MS.gene39943:CDS | 45.0% |
| !!! | TCCACATCGGTTTTTCCGTA+GGG | - | chr1.4:58447162-58447181 | None:intergenic | 45.0% |
| !!! | TTCCACATCGGTTTTTCCGT+AGG | - | chr1.4:58447163-58447182 | None:intergenic | 45.0% |
| ACCCTACGGAAAAACCGATG+TGG | + | chr1.4:58447158-58447177 | MS.gene39943:CDS | 50.0% | |
| AGGTGGGTGATGTCAAGACA+AGG | + | chr1.4:58448180-58448199 | MS.gene39943:intron | 50.0% | |
| ATGAAGGACCATCGGAGTTC+GGG | - | chr1.4:58447225-58447244 | None:intergenic | 50.0% | |
| GAGTGAAAACCGCTAGCAGA+AGG | - | chr1.4:58447543-58447562 | None:intergenic | 50.0% | |
| GATGAAGGACCATCGGAGTT+CGG | - | chr1.4:58447226-58447245 | None:intergenic | 50.0% | |
| TTCCTTGGCCCCTTCTTGTT+TGG | + | chr1.4:58448607-58448626 | MS.gene39943:CDS | 50.0% | |
| ! | AAGCGCAACGCACTGATGAA+AGG | - | chr1.4:58447390-58447409 | None:intergenic | 50.0% |
| ! | AGCGCAACGCACTGATGAAA+GGG | - | chr1.4:58447389-58447408 | None:intergenic | 50.0% |
| ! | GTTGTGCTGCTATGAAGCAC+GGG | + | chr1.4:58447955-58447974 | MS.gene39943:intron | 50.0% |
| CACCAAACAAGAAGGGGCCA+AGG | - | chr1.4:58448612-58448631 | None:intergenic | 55.0% | |
| CGGGTAGAGAGGTCTTGAAC+CGG | - | chr1.4:58447187-58447206 | None:intergenic | 55.0% | |
| TCGAGCATCATCGGGTAGAG+AGG | - | chr1.4:58447198-58447217 | None:intergenic | 55.0% | |
| TCGGGGCTTTCGAGCATCAT+CGG | - | chr1.4:58447207-58447226 | None:intergenic | 55.0% | |
| TGAAGGACCATCGGAGTTCG+GGG | - | chr1.4:58447224-58447243 | None:intergenic | 55.0% | |
| ! | ATGCCAGTGCCACTGTCGTA+CGG | - | chr1.4:58447987-58448006 | None:intergenic | 55.0% |
| !! | TACGACAGTGGCACTGGCAT+TGG | + | chr1.4:58447987-58448006 | MS.gene39943:intron | 55.0% |
| CGGGGCTTTCGAGCATCATC+GGG | - | chr1.4:58447206-58447225 | None:intergenic | 60.0% | |
| CTACTCGCCACCATCGCTGT+CGG | + | chr1.4:58447276-58447295 | MS.gene39943:CDS | 60.0% | |
| CTGCTATGAAGCACGGGTGC+AGG | + | chr1.4:58447961-58447980 | MS.gene39943:intron | 60.0% | |
| GTAAAGAGCGAGACCAGCGC+CGG | - | chr1.4:58447349-58447368 | None:intergenic | 60.0% | |
| TCGAAAGCCCCGAACTCCGA+TGG | + | chr1.4:58447214-58447233 | MS.gene39943:CDS | 60.0% | |
| AGGCCGTACGACAGTGGCAC+TGG | + | chr1.4:58447981-58448000 | MS.gene39943:intron | 65.0% | |
| GGGACGAACGGTGACGACGA+CGG | - | chr1.4:58447304-58447323 | None:intergenic | 65.0% | |
| TTCTTCGCTACCACCGGCGC+TGG | + | chr1.4:58447333-58447352 | MS.gene39943:CDS | 65.0% | |
| GGGTGCAGGCCGTACGACAG+TGG | + | chr1.4:58447975-58447994 | MS.gene39943:intron | 70.0% | |
| ! | AAGAGCGAGACCAGCGCCGG+TGG | - | chr1.4:58447346-58447365 | None:intergenic | 70.0% |
| !! | GACGACGGCGCCGACAGCGA+TGG | - | chr1.4:58447289-58447308 | None:intergenic | 75.0% |
| !! | GACGGCGCCGACAGCGATGG+TGG | - | chr1.4:58447286-58447305 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58447141 | 58448955 | 58447141 | ID=MS.gene39943 |
| chr1.4 | mRNA | 58447141 | 58448955 | 58447141 | ID=MS.gene39943.t1;Parent=MS.gene39943 |
| chr1.4 | exon | 58447141 | 58447396 | 58447141 | ID=MS.gene39943.t1.exon1;Parent=MS.gene39943.t1 |
| chr1.4 | CDS | 58447141 | 58447396 | 58447141 | ID=cds.MS.gene39943.t1;Parent=MS.gene39943.t1 |
| chr1.4 | exon | 58447494 | 58447607 | 58447494 | ID=MS.gene39943.t1.exon2;Parent=MS.gene39943.t1 |
| chr1.4 | CDS | 58447494 | 58447607 | 58447494 | ID=cds.MS.gene39943.t1;Parent=MS.gene39943.t1 |
| chr1.4 | exon | 58448509 | 58448666 | 58448509 | ID=MS.gene39943.t1.exon3;Parent=MS.gene39943.t1 |
| chr1.4 | CDS | 58448509 | 58448666 | 58448509 | ID=cds.MS.gene39943.t1;Parent=MS.gene39943.t1 |
| chr1.4 | exon | 58448749 | 58448955 | 58448749 | ID=MS.gene39943.t1.exon4;Parent=MS.gene39943.t1 |
| chr1.4 | CDS | 58448749 | 58448955 | 58448749 | ID=cds.MS.gene39943.t1;Parent=MS.gene39943.t1 |
| Gene Sequence |
| Protein sequence |
