AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009762

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009762.t1 MTR_5g073210 97.143 560 15 1 1 559 1 560 0.0 1123
MS.gene009762.t1 MTR_5g083360 60.670 567 215 3 1 559 1 567 0.0 738
MS.gene009762.t1 MTR_3g071890 58.427 534 214 4 3 534 12 539 0.0 660
MS.gene009762.t1 MTR_5g020620 52.847 562 251 6 3 559 9 561 0.0 602
MS.gene009762.t1 MTR_5g020600 52.035 565 252 7 3 559 13 566 0.0 583
MS.gene009762.t1 MTR_2g008330 48.592 568 279 7 2 559 15 579 0.0 581
MS.gene009762.t1 MTR_7g060460 51.865 563 245 8 16 559 26 581 0.0 572
MS.gene009762.t1 MTR_7g062310 51.273 550 249 6 25 559 48 593 0.0 566
MS.gene009762.t1 MTR_7g062250 51.845 569 253 10 7 559 15 578 0.0 563
MS.gene009762.t1 MTR_7g458880 50.432 579 258 10 1 559 11 580 0.0 563
MS.gene009762.t1 MTR_5g069680 49.470 566 266 8 4 559 3 558 0.0 561
MS.gene009762.t1 MTR_4g015120 50.179 558 264 6 8 559 8 557 0.0 560
MS.gene009762.t1 MTR_7g058690 50.347 576 257 10 4 559 14 580 0.0 559
MS.gene009762.t1 MTR_3g462760 50.912 548 253 7 17 559 20 556 0.0 549
MS.gene009762.t1 MTR_3g101635 49.814 538 262 5 11 542 14 549 0.0 548
MS.gene009762.t1 MTR_3g101640 49.725 545 265 6 22 559 29 571 0.0 545
MS.gene009762.t1 MTR_4g064530 50.536 560 256 12 1 547 22 573 0.0 534
MS.gene009762.t1 MTR_7g065980 45.927 577 288 10 1 559 1 571 0.0 531
MS.gene009762.t1 MTR_7g065970 49.472 568 271 8 4 559 7 570 0.0 528
MS.gene009762.t1 MTR_5g081810 49.074 540 256 10 26 559 3 529 0.0 528
MS.gene009762.t1 MTR_4g019225 48.446 547 267 6 26 559 28 572 0.0 525
MS.gene009762.t1 MTR_8g027375 44.144 555 299 7 12 559 21 571 1.28e-174 506
MS.gene009762.t1 MTR_4g064530 49.908 543 250 13 1 530 22 555 2.61e-172 499
MS.gene009762.t1 MTR_8g091390 31.514 568 329 18 16 550 24 564 2.49e-68 231
MS.gene009762.t1 MTR_3g078700 31.942 551 311 21 4 534 9 515 2.55e-65 222
MS.gene009762.t1 MTR_5g081790 44.203 276 136 9 248 517 157 420 5.70e-63 213
MS.gene009762.t1 MTR_5g081790 46.405 153 75 1 18 163 18 170 1.15e-42 158
MS.gene009762.t1 MTR_3g078740 30.100 598 337 22 4 549 9 577 7.19e-62 214
MS.gene009762.t1 MTR_3g078730 29.912 565 331 21 4 549 9 527 7.01e-57 199
MS.gene009762.t1 MTR_3g008580 27.798 554 355 16 5 541 8 533 3.65e-47 174
MS.gene009762.t1 MTR_4g101650 27.113 568 378 15 4 559 6 549 8.02e-46 170
MS.gene009762.t1 MTR_4g075690 28.723 564 349 19 8 559 10 532 2.06e-44 165
MS.gene009762.t1 MTR_1g090707 27.592 569 350 20 11 559 10 536 2.27e-44 166
MS.gene009762.t1 MTR_3g083430 27.768 551 346 17 4 541 6 517 5.04e-44 164
MS.gene009762.t1 MTR_3g083400 27.768 551 346 17 4 541 6 517 7.27e-44 164
MS.gene009762.t1 MTR_3g083440 27.768 551 346 17 4 541 6 517 7.94e-44 164
MS.gene009762.t1 MTR_3g083390 27.768 551 346 17 4 541 6 517 8.51e-44 164
MS.gene009762.t1 MTR_4g049390 28.295 569 348 18 6 559 7 530 1.06e-43 163
MS.gene009762.t1 MTR_3g083450 27.704 527 336 16 25 541 27 518 1.09e-42 160
MS.gene009762.t1 MTR_3g115050 28.571 574 350 20 1 559 5 533 1.95e-42 160
MS.gene009762.t1 MTR_4g083190 27.737 548 325 19 2 525 3 503 5.78e-42 159
MS.gene009762.t1 MTR_4g048350 29.831 533 316 20 39 559 43 529 1.72e-41 157
MS.gene009762.t1 MTR_4g083210 26.531 539 328 19 8 525 6 497 2.76e-41 157
MS.gene009762.t1 MTR_5g018270 27.255 521 321 19 17 525 22 496 2.01e-40 154
MS.gene009762.t1 MTR_8g479380 27.324 527 335 16 8 525 10 497 3.79e-40 153
MS.gene009762.t1 MTR_1g026410 26.527 573 357 15 4 559 7 532 5.34e-40 153
MS.gene009762.t1 MTR_3g083410 26.886 517 313 15 45 541 10 481 2.50e-39 150
MS.gene009762.t1 MTR_2g088080 29.456 533 319 18 39 559 46 533 8.43e-39 149
MS.gene009762.t1 MTR_8g479390 26.614 511 332 16 21 525 26 499 9.16e-39 149
MS.gene009762.t1 MTR_8g073840 40.000 200 80 4 17 214 23 184 3.23e-37 140
MS.gene009762.t1 MTR_7g051440 27.930 512 330 18 25 524 30 514 1.53e-36 144
MS.gene009762.t1 MTR_4g075690 29.707 478 284 19 8 473 10 447 2.15e-36 141
MS.gene009762.t1 MTR_4g132320 27.739 566 353 20 7 559 12 534 1.24e-32 132
MS.gene009762.t1 MTR_2g088080 28.807 486 300 17 81 559 6 452 3.92e-29 120
MS.gene009762.t1 MTR_7g058670 59.259 81 32 1 81 160 13 93 3.11e-27 105
MS.gene009762.t1 MTR_3g079660 36.264 91 53 2 469 559 5 90 4.28e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009762.t1 AT2G30210 70.515 563 157 2 5 559 9 570 0.0 833
MS.gene009762.t1 AT5G07130 65.439 570 185 5 1 559 1 569 0.0 764
MS.gene009762.t1 AT5G05390 60.428 561 215 5 3 559 8 565 0.0 718
MS.gene009762.t1 AT2G40370 58.333 576 222 4 2 559 5 580 0.0 714
MS.gene009762.t1 AT5G07130 68.041 485 143 5 86 559 1 484 0.0 668
MS.gene009762.t1 AT5G07130 68.041 485 143 5 86 559 1 484 0.0 668
MS.gene009762.t1 AT2G29130 52.705 573 250 9 4 559 5 573 0.0 580
MS.gene009762.t1 AT5G09360 49.378 563 273 7 1 559 15 569 0.0 576
MS.gene009762.t1 AT5G03260 51.337 561 257 7 4 559 8 557 0.0 568
MS.gene009762.t1 AT5G60020 51.964 560 236 10 25 559 26 577 0.0 567
MS.gene009762.t1 AT5G60020 52.727 550 227 10 35 559 4 545 0.0 564
MS.gene009762.t1 AT2G38080 50.088 567 266 8 1 559 1 558 0.0 557
MS.gene009762.t1 AT5G58910 49.470 566 267 6 4 559 11 567 0.0 548
MS.gene009762.t1 AT5G58910 49.470 566 266 7 4 559 11 566 0.0 547
MS.gene009762.t1 AT5G01190 50.000 560 267 6 5 559 7 558 0.0 539
MS.gene009762.t1 AT2G46570 46.085 562 292 7 5 559 12 569 0.0 528
MS.gene009762.t1 AT5G58910 50.281 533 240 6 37 559 6 523 0.0 527
MS.gene009762.t1 AT5G01190 51.527 524 242 5 41 559 28 544 0.0 524
MS.gene009762.t1 AT3G09220 49.457 552 257 9 4 542 8 550 0.0 522
MS.gene009762.t1 AT1G18140 47.965 565 266 9 17 559 23 581 2.12e-180 521
MS.gene009762.t1 AT5G60020 51.931 518 216 10 25 517 26 535 1.28e-177 513
MS.gene009762.t1 AT5G01040 45.714 560 285 7 11 559 15 566 4.32e-173 502
MS.gene009762.t1 AT5G48100 45.336 536 279 9 24 549 22 553 5.01e-168 489
MS.gene009762.t1 AT5G01050 45.018 562 288 7 11 559 15 568 8.94e-168 489
MS.gene009762.t1 AT2G46570 46.186 485 251 6 81 559 4 484 4.79e-157 457
MS.gene009762.t1 AT3G09220 49.455 459 212 8 97 542 2 453 3.76e-148 434
MS.gene009762.t1 AT5G21100 31.520 533 303 17 39 538 39 542 2.75e-69 234
MS.gene009762.t1 AT4G39830 31.532 555 301 21 39 549 51 570 3.80e-68 231
MS.gene009762.t1 AT5G21105 30.688 567 329 21 5 537 22 558 1.08e-64 222
MS.gene009762.t1 AT5G21105 30.347 547 317 22 5 517 22 538 3.60e-55 195
MS.gene009762.t1 AT4G39830 30.512 508 275 20 85 549 1 473 7.65e-51 182
MS.gene009762.t1 AT4G39830 30.556 504 272 20 89 549 7 475 3.63e-50 180
MS.gene009762.t1 AT1G75790 28.411 535 327 15 1 519 1 495 3.65e-49 179
MS.gene009762.t1 AT4G25240 29.422 571 356 18 4 559 12 550 1.98e-48 177
MS.gene009762.t1 AT4G25240 29.422 571 356 18 4 559 12 550 1.98e-48 177
MS.gene009762.t1 AT4G12420 28.037 535 349 14 5 527 6 516 3.40e-47 174
MS.gene009762.t1 AT4G12420 28.037 535 349 14 5 527 6 516 3.40e-47 174
MS.gene009762.t1 AT4G39830 29.821 503 264 19 89 549 7 462 1.87e-46 170
MS.gene009762.t1 AT5G66920 27.928 555 326 17 25 559 38 538 1.86e-45 168
MS.gene009762.t1 AT5G51480 26.607 560 372 16 14 559 16 550 8.99e-44 164
MS.gene009762.t1 AT5G48450 27.370 559 353 19 8 556 13 528 1.02e-43 164
MS.gene009762.t1 AT1G21850 28.860 544 302 19 8 525 12 496 1.16e-43 163
MS.gene009762.t1 AT5G48450 27.370 559 353 19 8 556 13 528 1.75e-43 164
MS.gene009762.t1 AT1G21860 27.205 533 326 17 8 525 11 496 1.52e-41 157
MS.gene009762.t1 AT4G22010 27.617 554 362 14 11 559 11 530 1.96e-41 157
MS.gene009762.t1 AT1G76160 27.599 558 359 17 8 559 12 530 9.82e-41 155
MS.gene009762.t1 AT1G41830 26.372 565 365 16 3 559 10 531 7.63e-40 152
MS.gene009762.t1 AT4G28090 25.763 524 351 13 6 524 9 499 2.51e-37 145
MS.gene009762.t1 AT1G55570 26.335 543 324 16 4 519 7 500 4.07e-37 145
MS.gene009762.t1 AT2G23630 29.602 527 320 19 42 559 53 537 9.48e-37 144
MS.gene009762.t1 AT2G23630 29.602 527 320 19 42 559 48 532 1.24e-36 143
MS.gene009762.t1 AT4G37160 27.580 562 366 17 2 559 10 534 2.60e-34 137
MS.gene009762.t1 AT3G13390 26.326 509 323 16 25 519 29 499 3.49e-33 134
MS.gene009762.t1 AT5G21105 30.267 337 207 11 209 537 51 367 1.19e-32 129
MS.gene009762.t1 AT1G55560 25.468 534 338 19 4 519 5 496 9.50e-32 129
MS.gene009762.t1 AT3G13400 25.794 535 335 20 4 519 6 497 5.96e-31 127
MS.gene009762.t1 AT3G13400 25.794 535 335 20 4 519 6 497 5.96e-31 127
MS.gene009762.t1 AT4G38420 31.769 277 176 7 6 278 9 276 4.86e-30 123
MS.gene009762.t1 AT4G38420 32.500 280 170 8 6 278 9 276 1.10e-29 122
MS.gene009762.t1 AT4G38420 32.500 280 170 8 6 278 9 276 2.89e-29 122
MS.gene009762.t1 AT4G37160 29.316 307 196 6 2 305 10 298 4.31e-26 111

Find 146 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTATTTATCCGAAAA+TGG 0.151993 5.3:-58066609 MS.gene009762:CDS
CCTTGACACCTTGGACTATT+AGG 0.188458 5.3:+58065311 None:intergenic
TTTATAGTTGGTTCAGGTTT+TGG 0.199584 5.3:-58064990 MS.gene009762:CDS
GCCACCATAGTGTTCCTTCT+TGG 0.231177 5.3:+58066672 None:intergenic
CAAAGGATACTCACGGTAAA+TGG 0.249661 5.3:-58067022 MS.gene009762:CDS
CCGTCCCTCGCTTCGATTGT+TGG 0.252327 5.3:+58066986 None:intergenic
GTCTTGAAGGTGGTCTATTT+TGG 0.257321 5.3:+58065486 None:intergenic
ATTGTTGTGAATCAGGAATT+TGG 0.267922 5.3:-58064564 MS.gene009762:intron
AATGGTAAAGCTGGCAAAAT+AGG 0.297294 5.3:+58065464 None:intergenic
AGAGAATTTCCCATTCTTCT+TGG 0.298450 5.3:-58066557 MS.gene009762:intron
AAGTTGTTCAAGTTGAAATA+TGG 0.300472 5.3:-58065095 MS.gene009762:CDS
TTAATGCAAGCTTACTATAA+TGG 0.307661 5.3:-58065221 MS.gene009762:CDS
CATTTCTTTATAGTTGGTTC+AGG 0.332092 5.3:-58064996 MS.gene009762:CDS
CTCCATAGACAGTGGCTCTT+AGG 0.334059 5.3:+58066633 None:intergenic
AACGTAGCAGGATCAGTTCT+TGG 0.335909 5.3:+58064957 None:intergenic
ACATAGATTCACATCTCAAT+TGG 0.345519 5.3:-58064528 MS.gene009762:CDS
ATTATAGTAAGCTTGCATTA+AGG 0.353120 5.3:+58065223 None:intergenic
TTCCTAAGAGCCACTGTCTA+TGG 0.354270 5.3:-58066635 MS.gene009762:CDS
GGGTTTGGCAACAGCACTTT+TGG 0.375326 5.3:-58064506 MS.gene009762:CDS
TTCACATCTCAATTGGGGTT+TGG 0.376065 5.3:-58064521 MS.gene009762:CDS
GGGTTCCATTTCTTTATAGT+TGG 0.378042 5.3:-58065002 MS.gene009762:CDS
CATAGATTCACATCTCAATT+GGG 0.380545 5.3:-58064527 MS.gene009762:CDS
CCATTTGGTCCTTGACACCT+TGG 0.385637 5.3:+58065302 None:intergenic
GCTGCAAATCTTGTTCCATT+TGG 0.386553 5.3:+58065287 None:intergenic
TGCATTAAGGAAGTTGTTCT+AGG 0.389050 5.3:+58065236 None:intergenic
GCTTACTATAATGGTGTTCC+TGG 0.390895 5.3:-58065212 MS.gene009762:CDS
ATGCATTATACCTGGATTAT+CGG 0.396646 5.3:+58064860 None:intergenic
TTGAAGATTACCAAGAAGAA+TGG 0.396806 5.3:+58066547 None:intergenic
TTCATTATTTATCCGAAAAT+GGG 0.397106 5.3:-58066608 MS.gene009762:CDS
ATCTCCTGGTTGACCATTCA+TGG 0.401011 5.3:+58066074 None:intergenic
GTTGTCAAATGCAGCATTCA+TGG 0.401840 5.3:+58065535 None:intergenic
GAATGATTTCAAACCTTGGC+TGG 0.402430 5.3:+58066038 None:intergenic
ACGGTAAATGGACAGTTTCC+TGG 0.403408 5.3:-58067010 MS.gene009762:CDS
CCACCTGTGAGGAATACTAT+TGG 0.412353 5.3:-58064921 MS.gene009762:CDS
TGTGCAACAGGCATGGGCTT+AGG 0.415052 5.3:-58066790 MS.gene009762:intron
GCATTCACATCAAGGATTAG+AGG 0.421253 5.3:-58065416 MS.gene009762:CDS
TTATTGTTCACTGTAGGGTT+AGG 0.421636 5.3:-58065353 MS.gene009762:CDS
CTGAACCAACTATAAAGAAA+TGG 0.426203 5.3:+58064997 None:intergenic
ATGCAGCATTCATGGCGGTT+TGG 0.436299 5.3:+58065543 None:intergenic
GAGGTATCACTGACTGTAAT+GGG 0.438774 5.3:+58064467 None:intergenic
TTGAACTGTATAGGAGGAAC+AGG 0.439285 5.3:+58065167 None:intergenic
GATCACCCTATGCATGTTCA+TGG 0.442341 5.3:-58065023 MS.gene009762:CDS
CGTTTCAACGCCGATAATCC+AGG 0.444632 5.3:-58064870 MS.gene009762:intron
GAAATGTTCCTAGGGGTTTG+TGG 0.445135 5.3:-58065136 MS.gene009762:CDS
TCTCTAGTTGGCTTAGAGAA+AGG 0.447045 5.3:+58066575 None:intergenic
ATTACACAGGAAATGTTCCT+AGG 0.452764 5.3:-58065145 MS.gene009762:CDS
TGAAGATTACCAAGAAGAAT+GGG 0.457331 5.3:+58066548 None:intergenic
GCTGGCAAAATAGGTCTTGA+AGG 0.459511 5.3:+58065473 None:intergenic
AGAATGGGAAATTCTCTAGT+TGG 0.466112 5.3:+58066563 None:intergenic
CCTGTGTAATTGAACTGTAT+AGG 0.466472 5.3:+58065158 None:intergenic
GTTTGTCTTAAGAGAGCCAT+TGG 0.471023 5.3:+58066138 None:intergenic
GTGTATGCAATAGATACATT+TGG 0.475787 5.3:+58066096 None:intergenic
CCAAGGTGTCAAGGACCAAA+TGG 0.477385 5.3:-58065302 MS.gene009762:CDS
GTTGGCTTAGAGAAAGGATA+AGG 0.479975 5.3:+58066581 None:intergenic
GTGAGTTTATTGTTCACTGT+AGG 0.484623 5.3:-58065359 MS.gene009762:CDS
TGGAACACCTCCTGGTGGAT+GGG 0.487188 5.3:-58064901 MS.gene009762:CDS
CTCGCTTCGATTGTTGGACC+AGG 0.488842 5.3:+58066992 None:intergenic
TAACTTCCACCTGGTTGGAT+TGG 0.489901 5.3:+58066719 None:intergenic
TCTTAAGAGAATTGTTTCTC+CGG 0.491448 5.3:+58065760 None:intergenic
TCGACAAGGTTGAACGTAGC+AGG 0.491890 5.3:+58064945 None:intergenic
GTGATCAAAGTAACAAATGC+TGG 0.495378 5.3:-58066953 MS.gene009762:CDS
TGAGTTTATTGTTCACTGTA+GGG 0.502703 5.3:-58065358 MS.gene009762:CDS
AACACTAGAGTCCTCATGAT+AGG 0.504563 5.3:-58065641 MS.gene009762:CDS
GGAGGTATCACTGACTGTAA+TGG 0.504892 5.3:+58064466 None:intergenic
AATACTATTGGAACACCTCC+TGG 0.507986 5.3:-58064909 MS.gene009762:CDS
TTGAGAAATCCATGGGCTGA+TGG 0.512347 5.3:-58066764 MS.gene009762:CDS
TTGGAACACCTCCTGGTGGA+TGG 0.512973 5.3:-58064902 MS.gene009762:CDS
AACACCTCCTGGTGGATGGG+TGG 0.515918 5.3:-58064898 MS.gene009762:CDS
GAACATCTGTAGAGATCTCC+TGG 0.518086 5.3:+58066060 None:intergenic
AAAACCAAGAAGGAACACTA+TGG 0.519751 5.3:-58066676 MS.gene009762:CDS
CAGTGGATGGAGATGTTGTA+AGG 0.523772 5.3:+58066929 None:intergenic
TCTATTGCATACACCATGAA+TGG 0.528526 5.3:-58066087 MS.gene009762:CDS
CTCTACAGATGTTCCAGCCA+AGG 0.531699 5.3:-58066051 MS.gene009762:intron
GCCGCCATGTAGTATCGGCC+AGG 0.532008 5.3:+58065575 None:intergenic
CTGCAAAACAATCTGAACAT+TGG 0.532115 5.3:+58065070 None:intergenic
CTGCAACTGCATTCACATCA+AGG 0.532127 5.3:-58065424 MS.gene009762:CDS
TGAGGTAGATCTGGTGGTGG+AGG 0.538755 5.3:+58064448 None:intergenic
GGACATTGTGTCACATAACT+AGG 0.539105 5.3:+58066740 None:intergenic
TGGAACCCATGAACATGCAT+AGG 0.539781 5.3:+58065017 None:intergenic
ACCACCTGGCCGATACTACA+TGG 0.540545 5.3:-58065579 MS.gene009762:CDS
TAGCATTGAGGTAGATCTGG+TGG 0.543913 5.3:+58064442 None:intergenic
TTTACAATTCAAAACCAAGA+AGG 0.543934 5.3:-58066686 MS.gene009762:CDS
TGTTTCATTTGCTGCAGCAG+AGG 0.548223 5.3:-58067191 MS.gene009762:CDS
ATATTTCAACTTGAACAACT+TGG 0.548915 5.3:+58065097 None:intergenic
CGATGATAGTTACCAGTGGA+TGG 0.549490 5.3:+58066916 None:intergenic
TATCATGAGGACTCTAGTGT+TGG 0.554372 5.3:+58065643 None:intergenic
CGCGTGCCGCCATGTAGTAT+CGG 0.555822 5.3:+58065570 None:intergenic
CTAGGTGTCCACAAACCCCT+AGG 0.555841 5.3:+58065128 None:intergenic
TATGCAATAGATACATTTGG+AGG 0.558814 5.3:+58066099 None:intergenic
ATGTGTAACTTCCACCTGGT+TGG 0.559503 5.3:+58066714 None:intergenic
TTACACAGGAAATGTTCCTA+GGG 0.560206 5.3:-58065144 MS.gene009762:CDS
CCTAATAGTCCAAGGTGTCA+AGG 0.568344 5.3:-58065311 MS.gene009762:CDS
CGAATGGCCACCCATCCACC+AGG 0.572787 5.3:+58064891 None:intergenic
GTCACAGCTGATCAACCACC+TGG 0.575678 5.3:-58065593 MS.gene009762:CDS
ATGGTTTGATAGAGATCCAA+TGG 0.580804 5.3:-58066154 MS.gene009762:CDS
GGTTTGTGGACACCTAGAAA+AGG 0.582031 5.3:-58065122 MS.gene009762:CDS
TACTAGTATAGTAACAATTG+AGG 0.584246 5.3:-58065045 MS.gene009762:CDS
TTAAGACAAACACAGTTCAC+AGG 0.584771 5.3:-58066126 MS.gene009762:CDS
CGGTATGTGTAACTTCCACC+TGG 0.585408 5.3:+58066710 None:intergenic
ATGAGGACTCTAGTGTTGGA+AGG 0.587715 5.3:+58065647 None:intergenic
GGCATAGACTTGAAAACGTA+CGG 0.589109 5.3:+58065781 None:intergenic
TTCAAACTGCAACAGTGAAG+AGG 0.591115 5.3:-58067057 MS.gene009762:CDS
ATCACCCTATGCATGTTCAT+GGG 0.594471 5.3:-58065022 MS.gene009762:CDS
ATAGATTCACATCTCAATTG+GGG 0.596176 5.3:-58064526 MS.gene009762:CDS
TTAGGATGTTGAGAAATCCA+TGG 0.598180 5.3:-58066772 MS.gene009762:CDS
CAGAATGACTGTTGTTGCTA+CGG 0.601727 5.3:-58065687 MS.gene009762:CDS
AGGACATTGATTGTTTGACC+TGG 0.607085 5.3:+58065617 None:intergenic
AAACACTTACAACAAACTGA+TGG 0.608462 5.3:+58067161 None:intergenic
CATTGAGGTAGATCTGGTGG+TGG 0.610540 5.3:+58064445 None:intergenic
GCACAAATCCTAATAGTCCA+AGG 0.611114 5.3:-58065319 MS.gene009762:CDS
TACACCATGAATGGTCAACC+AGG 0.613643 5.3:-58066078 MS.gene009762:CDS
TTTGACCTGGTCCTATCATG+AGG 0.614547 5.3:+58065630 None:intergenic
TGGTCCAACAATCGAAGCGA+GGG 0.614589 5.3:-58066990 MS.gene009762:CDS
GTGTAATTGAACTGTATAGG+AGG 0.616090 5.3:+58065161 None:intergenic
GGAACCCATGAACATGCATA+GGG 0.618003 5.3:+58065018 None:intergenic
CCTATACAGTTCAATTACAC+AGG 0.618962 5.3:-58065158 MS.gene009762:CDS
CTATGGTGGCATGCTCACAC+TGG 0.620025 5.3:-58066659 MS.gene009762:CDS
TAGGATGTTGAGAAATCCAT+GGG 0.621362 5.3:-58066771 MS.gene009762:CDS
CCAATAGTATTCCTCACAGG+TGG 0.626541 5.3:+58064921 None:intergenic
GTGGTTGATCAGCTGTGACA+AGG 0.626930 5.3:+58065597 None:intergenic
CTTACAACATCTCCATCCAC+TGG 0.628162 5.3:-58066928 MS.gene009762:intron
TCCTCACAGGTGGATCGACA+AGG 0.628411 5.3:+58064931 None:intergenic
CCAACAATCGAAGCGAGGGA+CGG 0.628554 5.3:-58066986 MS.gene009762:CDS
AGAGTCCTCATGATAGGACC+AGG 0.629037 5.3:-58065635 MS.gene009762:CDS
GTTCCAATAGTATTCCTCAC+AGG 0.630506 5.3:+58064918 None:intergenic
ATTATCGGCGTTGAAACGAA+TGG 0.633041 5.3:+58064875 None:intergenic
AACTGTATAGGAGGAACAGG+AGG 0.636960 5.3:+58065170 None:intergenic
TAACTAGGTCCATCAGCCCA+TGG 0.645673 5.3:+58066755 None:intergenic
ACACAATGTCCAATCCAACC+AGG 0.647850 5.3:-58066728 MS.gene009762:CDS
CTGGTCCAACAATCGAAGCG+AGG 0.651566 5.3:-58066991 MS.gene009762:CDS
CAAAACACAAAGGATACTCA+CGG 0.656314 5.3:-58067029 MS.gene009762:CDS
TACACAGGAAATGTTCCTAG+GGG 0.663460 5.3:-58065143 MS.gene009762:CDS
GCCATGTAGTATCGGCCAGG+TGG 0.665400 5.3:+58065578 None:intergenic
TGATGTGAATGCAGTTGCAG+TGG 0.665699 5.3:+58065427 None:intergenic
ACCAAGAAGGAACACTATGG+TGG 0.666226 5.3:-58066673 MS.gene009762:CDS
TAGCAACAACAGTCATTCTG+TGG 0.668466 5.3:+58065690 None:intergenic
AATGAAAGCTCCATAGACAG+TGG 0.677360 5.3:+58066625 None:intergenic
ACTATTGGAACACCTCCTGG+TGG 0.679776 5.3:-58064906 MS.gene009762:CDS
ACCTTGTCGATCCACCTGTG+AGG 0.686020 5.3:-58064932 MS.gene009762:CDS
GTCAAATGCAGCATTCATGG+CGG 0.689483 5.3:+58065538 None:intergenic
GGCAAAATAGGTCTTGAAGG+TGG 0.689950 5.3:+58065476 None:intergenic
AGAGGCTGTGCAAAACACAA+AGG 0.694979 5.3:-58067039 MS.gene009762:CDS
CAATGTCCAATCCAACCAGG+TGG 0.711993 5.3:-58066725 MS.gene009762:CDS
ATGGCCACCCATCCACCAGG+AGG 0.714381 5.3:+58064894 None:intergenic
AGGAACAGGAGGAAAATCTG+TGG 0.731627 5.3:+58065181 None:intergenic
ACCTGGCCGATACTACATGG+CGG 0.772870 5.3:-58065576 MS.gene009762:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTCAAAATCATTTATATTA+CGG - chr5.3:58065789-58065808 MS.gene009762:intron 15.0%
!!! ATTTTGAAAGACTTTAATTT+TGG + chr5.3:58066291-58066310 None:intergenic 15.0%
!!! TGTTTGAGTATTTTTTTTTA+GGG + chr5.3:58065403-58065422 None:intergenic 15.0%
!!! TTGTTTGAGTATTTTTTTTT+AGG + chr5.3:58065404-58065423 None:intergenic 15.0%
!! GTATAAAACAATTACAATGT+AGG - chr5.3:58065870-58065889 MS.gene009762:intron 20.0%
!! TGAATTCAAAAATCAACATT+TGG + chr5.3:58067093-58067112 None:intergenic 20.0%
!! TTCATTATTTATCCGAAAAT+GGG - chr5.3:58065068-58065087 MS.gene009762:CDS 20.0%
!! TTTCATTATTTATCCGAAAA+TGG - chr5.3:58065067-58065086 MS.gene009762:CDS 20.0%
!!! AGCTTTTTGTATATAAGTAA+AGG - chr5.3:58065456-58065475 MS.gene009762:CDS 20.0%
!!! AGTATTTTTTTTTAGGGATT+TGG + chr5.3:58065397-58065416 None:intergenic 20.0%
!!! ATGTGAATGTTTTTAAATCA+TGG - chr5.3:58067001-58067020 MS.gene009762:CDS 20.0%
!!! GAAAAATGAGTTCTAAATTA+TGG + chr5.3:58065822-58065841 None:intergenic 20.0%
!!! GTATTTTTTTTTAGGGATTT+GGG + chr5.3:58065396-58065415 None:intergenic 20.0%
! AAAAACACATTCTGTCAATA+TGG + chr5.3:58065487-58065506 None:intergenic 25.0%
! AATTCAAATCCTATTTCGAA+AGG + chr5.3:58065187-58065206 None:intergenic 25.0%
! ATAGTGAATGTTTGGATAAA+CGG + chr5.3:58064839-58064858 None:intergenic 25.0%
! ATATTTCAACTTGAACAACT+TGG + chr5.3:58066582-58066601 None:intergenic 25.0%
! ATTAGAATGATTTCAAACCT+TGG + chr5.3:58065645-58065664 None:intergenic 25.0%
! ATTATAGTAAGCTTGCATTA+AGG + chr5.3:58066456-58066475 None:intergenic 25.0%
! TAACATAAATGCATTATACC+TGG + chr5.3:58066827-58066846 None:intergenic 25.0%
! TAACTAACTTTAATGATTGC+TGG - chr5.3:58064589-58064608 MS.gene009762:intron 25.0%
! TACTAGTATAGTAACAATTG+AGG - chr5.3:58066631-58066650 MS.gene009762:CDS 25.0%
! TAGTTAATACAGTTGCAAAT+TGG + chr5.3:58064575-58064594 None:intergenic 25.0%
! TTAATGCAAGCTTACTATAA+TGG - chr5.3:58066455-58066474 MS.gene009762:intron 25.0%
! TTTACAATTCAAAACCAAGA+AGG - chr5.3:58064990-58065009 MS.gene009762:CDS 25.0%
! TTTGATAAACCTTTCGAAAT+AGG - chr5.3:58065175-58065194 MS.gene009762:CDS 25.0%
! TTTGTATATAAGTAAAGGCA+GGG - chr5.3:58065461-58065480 MS.gene009762:CDS 25.0%
!! AAGTATTTAAGACCATAATG+AGG + chr5.3:58064794-58064813 None:intergenic 25.0%
!! GTTGATAAAAAAGTGACTAA+AGG - chr5.3:58065848-58065867 MS.gene009762:intron 25.0%
!! TTTTGTATATAAGTAAAGGC+AGG - chr5.3:58065460-58065479 MS.gene009762:CDS 25.0%
!!! AAGTTGTTCAAGTTGAAATA+TGG - chr5.3:58066581-58066600 MS.gene009762:CDS 25.0%
!!! AATGTGTTTTTATGATGCAT+AGG - chr5.3:58065496-58065515 MS.gene009762:CDS 25.0%
!!! ACTATTTTATGCTACTTACT+TGG - chr5.3:58064447-58064466 MS.gene009762:CDS 25.0%
!!! ATGTGTTTTTATGATGCATA+GGG - chr5.3:58065497-58065516 MS.gene009762:CDS 25.0%
!!! CTTGGTTTTGAATTGTAAAT+CGG + chr5.3:58064989-58065008 None:intergenic 25.0%
!!! TTTACCATTTTTTAACGACA+CGG - chr5.3:58066226-58066245 MS.gene009762:intron 25.0%
AAAACGATGTATGGAAGTAA+TGG + chr5.3:58065671-58065690 None:intergenic 30.0%
AAACACTTACAACAAACTGA+TGG + chr5.3:58064518-58064537 None:intergenic 30.0%
ACATAGATTCACATCTCAAT+TGG - chr5.3:58067148-58067167 MS.gene009762:intron 30.0%
ATAGATTCACATCTCAATTG+GGG - chr5.3:58067150-58067169 MS.gene009762:intron 30.0%
ATGCATTATACCTGGATTAT+CGG + chr5.3:58066819-58066838 None:intergenic 30.0%
ATTGTTGTGAATCAGGAATT+TGG - chr5.3:58067112-58067131 MS.gene009762:intron 30.0%
CACATTTAGCTGCAATATAA+AGG + chr5.3:58065727-58065746 None:intergenic 30.0%
CATAGATTCACATCTCAATT+GGG - chr5.3:58067149-58067168 MS.gene009762:intron 30.0%
CTGAACCAACTATAAAGAAA+TGG + chr5.3:58066682-58066701 None:intergenic 30.0%
CTTTATATTGCAGCTAAATG+TGG - chr5.3:58065725-58065744 MS.gene009762:CDS 30.0%
GTGTATGCAATAGATACATT+TGG + chr5.3:58065583-58065602 None:intergenic 30.0%
TAAAACACTGACACAAACAT+CGG + chr5.3:58066975-58066994 None:intergenic 30.0%
TAGTGAATGTTTGGATAAAC+GGG + chr5.3:58064838-58064857 None:intergenic 30.0%
TATGCAATAGATACATTTGG+AGG + chr5.3:58065580-58065599 None:intergenic 30.0%
TCCAAATCCGAATTGAAATT+TGG + chr5.3:58065263-58065282 None:intergenic 30.0%
TCCAAATTTCAATTCGGATT+TGG - chr5.3:58065259-58065278 MS.gene009762:CDS 30.0%
TCGTTAAAAAATGGTAAAGC+TGG + chr5.3:58066224-58066243 None:intergenic 30.0%
TCTCTTGCATAGTTTATACT+AGG - chr5.3:58067043-58067062 MS.gene009762:CDS 30.0%
TGAAGATTACCAAGAAGAAT+GGG + chr5.3:58065131-58065150 None:intergenic 30.0%
TGAATTCATTGTTGTGAATC+AGG - chr5.3:58067105-58067124 MS.gene009762:intron 30.0%
TGAGTTTATTGTTCACTGTA+GGG - chr5.3:58066318-58066337 MS.gene009762:intron 30.0%
TTGAAGATTACCAAGAAGAA+TGG + chr5.3:58065132-58065151 None:intergenic 30.0%
! CATTTCTTTATAGTTGGTTC+AGG - chr5.3:58066680-58066699 MS.gene009762:CDS 30.0%
! CTGCAATTTAAAACGATGTA+TGG + chr5.3:58065680-58065699 None:intergenic 30.0%
! TCTTAAGAGAATTGTTTCTC+CGG + chr5.3:58065919-58065938 None:intergenic 30.0%
! TGTTTGTGTCAGTGTTTTAT+AGG - chr5.3:58066976-58066995 MS.gene009762:CDS 30.0%
!! TGTGTTTTTATGATGCATAG+GGG - chr5.3:58065498-58065517 MS.gene009762:CDS 30.0%
!! TTTATAGTTGGTTCAGGTTT+TGG - chr5.3:58066686-58066705 MS.gene009762:CDS 30.0%
!!! TTGAGTTTTTTGCAACAGTA+TGG + chr5.3:58065775-58065794 None:intergenic 30.0%
AAAACCAAGAAGGAACACTA+TGG - chr5.3:58065000-58065019 MS.gene009762:CDS 35.0%
AAATCTGTGGTAAAAACACC+AGG + chr5.3:58066485-58066504 None:intergenic 35.0%
AATGGTAAAGCTGGCAAAAT+AGG + chr5.3:58066215-58066234 None:intergenic 35.0%
AATGGTCCATATTTCAAGCT+CGG + chr5.3:58065307-58065326 None:intergenic 35.0%
ACTATGCAAGAGAGAGATAT+CGG + chr5.3:58067036-58067055 None:intergenic 35.0%
AGAATGGGAAATTCTCTAGT+TGG + chr5.3:58065116-58065135 None:intergenic 35.0%
AGACACATAAGAAGATTGTC+AGG + chr5.3:58064865-58064884 None:intergenic 35.0%
AGAGAATTTCCCATTCTTCT+TGG - chr5.3:58065119-58065138 MS.gene009762:CDS 35.0%
ATGGTTTGATAGAGATCCAA+TGG - chr5.3:58065522-58065541 MS.gene009762:CDS 35.0%
ATTACACAGGAAATGTTCCT+AGG - chr5.3:58066531-58066550 MS.gene009762:intron 35.0%
CAAAACACAAAGGATACTCA+CGG - chr5.3:58064647-58064666 MS.gene009762:intron 35.0%
CCTATACAGTTCAATTACAC+AGG - chr5.3:58066518-58066537 MS.gene009762:intron 35.0%
CCTGTGTAATTGAACTGTAT+AGG + chr5.3:58066521-58066540 None:intergenic 35.0%
CTGCAAAACAATCTGAACAT+TGG + chr5.3:58066609-58066628 None:intergenic 35.0%
GACCATTCGATCTTTATCAA+TGG - chr5.3:58065320-58065339 MS.gene009762:CDS 35.0%
GGGTTCCATTTCTTTATAGT+TGG - chr5.3:58066674-58066693 MS.gene009762:CDS 35.0%
GTGAGTTTATTGTTCACTGT+AGG - chr5.3:58066317-58066336 MS.gene009762:intron 35.0%
GTGATCAAAGTAACAAATGC+TGG - chr5.3:58064723-58064742 MS.gene009762:intron 35.0%
GTGTAATTGAACTGTATAGG+AGG + chr5.3:58066518-58066537 None:intergenic 35.0%
TAAACACCGAGCTTGAAATA+TGG - chr5.3:58065298-58065317 MS.gene009762:CDS 35.0%
TAGGATGTTGAGAAATCCAT+GGG - chr5.3:58064905-58064924 MS.gene009762:CDS 35.0%
TCAGGAACATAGTGAATGTT+TGG + chr5.3:58064847-58064866 None:intergenic 35.0%
TCTATTGCATACACCATGAA+TGG - chr5.3:58065589-58065608 MS.gene009762:CDS 35.0%
TGCATTAAGGAAGTTGTTCT+AGG + chr5.3:58066443-58066462 None:intergenic 35.0%
TTAAGACAAACACAGTTCAC+AGG - chr5.3:58065550-58065569 MS.gene009762:CDS 35.0%
TTACACAGGAAATGTTCCTA+GGG - chr5.3:58066532-58066551 MS.gene009762:intron 35.0%
TTAGGATGTTGAGAAATCCA+TGG - chr5.3:58064904-58064923 MS.gene009762:CDS 35.0%
TTATTGTTCACTGTAGGGTT+AGG - chr5.3:58066323-58066342 MS.gene009762:intron 35.0%
! AACAACTTGGTTCCTTTTCT+AGG + chr5.3:58066569-58066588 None:intergenic 35.0%
! AACTAGCTCTCTTAAAGTGA+TGG + chr5.3:58065157-58065176 None:intergenic 35.0%
! ACAGCACTTTTGGTAGAAAA+TGG - chr5.3:58067180-58067199 MS.gene009762:CDS 35.0%
! CTTTTGGTAGAAAATGGAGT+TGG - chr5.3:58067186-58067205 MS.gene009762:CDS 35.0%
! TTTTATGATGCATAGGGGAA+TGG - chr5.3:58065503-58065522 MS.gene009762:CDS 35.0%
!! CAATGTTCAGATTGTTTTGC+AGG - chr5.3:58066607-58066626 MS.gene009762:CDS 35.0%
AACACTAGAGTCCTCATGAT+AGG - chr5.3:58066035-58066054 MS.gene009762:intron 40.0%
AATACTATTGGAACACCTCC+TGG - chr5.3:58066767-58066786 MS.gene009762:CDS 40.0%
AATGAAAGCTCCATAGACAG+TGG + chr5.3:58065054-58065073 None:intergenic 40.0%
ATCACCCTATGCATGTTCAT+GGG - chr5.3:58066654-58066673 MS.gene009762:CDS 40.0%
CAAAGGATACTCACGGTAAA+TGG - chr5.3:58064654-58064673 MS.gene009762:intron 40.0%
CACATATGTCAGTGTCGTAT+CGG + chr5.3:58066887-58066906 None:intergenic 40.0%
CAGAATGACTGTTGTTGCTA+CGG - chr5.3:58065989-58066008 MS.gene009762:intron 40.0%
CGACGGTCCAAATTTCAATT+CGG - chr5.3:58065253-58065272 MS.gene009762:CDS 40.0%
CTTATGTGTCTTTGTGCAAC+AGG - chr5.3:58064874-58064893 MS.gene009762:CDS 40.0%
GAATGATTTCAAACCTTGGC+TGG + chr5.3:58065641-58065660 None:intergenic 40.0%
GCACAAATCCTAATAGTCCA+AGG - chr5.3:58066357-58066376 MS.gene009762:intron 40.0%
GCATTCACATCAAGGATTAG+AGG - chr5.3:58066260-58066279 MS.gene009762:intron 40.0%
GCTGCAAATCTTGTTCCATT+TGG + chr5.3:58066392-58066411 None:intergenic 40.0%
GCTTACTATAATGGTGTTCC+TGG - chr5.3:58066464-58066483 MS.gene009762:intron 40.0%
GGACATTGTGTCACATAACT+AGG + chr5.3:58064939-58064958 None:intergenic 40.0%
GGCATAGACTTGAAAACGTA+CGG + chr5.3:58065898-58065917 None:intergenic 40.0%
GGCCATTGATAAAGATCGAA+TGG + chr5.3:58065325-58065344 None:intergenic 40.0%
GTTCCAATAGTATTCCTCAC+AGG + chr5.3:58066761-58066780 None:intergenic 40.0%
GTTGTCAAATGCAGCATTCA+TGG + chr5.3:58066144-58066163 None:intergenic 40.0%
GTTTGTCTTAAGAGAGCCAT+TGG + chr5.3:58065541-58065560 None:intergenic 40.0%
TACACAGGAAATGTTCCTAG+GGG - chr5.3:58066533-58066552 MS.gene009762:intron 40.0%
TAGCAACAACAGTCATTCTG+TGG + chr5.3:58065989-58066008 None:intergenic 40.0%
TATCATGAGGACTCTAGTGT+TGG + chr5.3:58066036-58066055 None:intergenic 40.0%
TTCAAACTGCAACAGTGAAG+AGG - chr5.3:58064619-58064638 MS.gene009762:intron 40.0%
TTCACATCTCAATTGGGGTT+TGG - chr5.3:58067155-58067174 MS.gene009762:intron 40.0%
TTGAACTGTATAGGAGGAAC+AGG + chr5.3:58066512-58066531 None:intergenic 40.0%
TTTATCAATGGCCACTGATG+TGG - chr5.3:58065332-58065351 MS.gene009762:CDS 40.0%
! AGGACATTGATTGTTTGACC+TGG + chr5.3:58066062-58066081 None:intergenic 40.0%
! ATTATCGGCGTTGAAACGAA+TGG + chr5.3:58066804-58066823 None:intergenic 40.0%
! GAGGTATCACTGACTGTAAT+GGG + chr5.3:58067212-58067231 None:intergenic 40.0%
! GGATAAGGAGAACCCATTTT+CGG + chr5.3:58065083-58065102 None:intergenic 40.0%
! GTCTTGAAGGTGGTCTATTT+TGG + chr5.3:58066193-58066212 None:intergenic 40.0%
! GTTGGCTTAGAGAAAGGATA+AGG + chr5.3:58065098-58065117 None:intergenic 40.0%
! TCTCTAGTTGGCTTAGAGAA+AGG + chr5.3:58065104-58065123 None:intergenic 40.0%
!!! GTACGTTTTCAAGTCTATGC+CGG - chr5.3:58065897-58065916 MS.gene009762:intron 40.0%
AACGTAGCAGGATCAGTTCT+TGG + chr5.3:58066722-58066741 None:intergenic 45.0%
AACTGTATAGGAGGAACAGG+AGG + chr5.3:58066509-58066528 None:intergenic 45.0%
ACACAATGTCCAATCCAACC+AGG - chr5.3:58064948-58064967 MS.gene009762:CDS 45.0%
ACCAAGAAGGAACACTATGG+TGG - chr5.3:58065003-58065022 MS.gene009762:CDS 45.0%
ACGGTAAATGGACAGTTTCC+TGG - chr5.3:58064666-58064685 MS.gene009762:intron 45.0%
AGAGGCTGTGCAAAACACAA+AGG - chr5.3:58064637-58064656 MS.gene009762:intron 45.0%
AGGAACAGGAGGAAAATCTG+TGG + chr5.3:58066498-58066517 None:intergenic 45.0%
ATCGTCACTCGTCCTCATTA+TGG - chr5.3:58064779-58064798 MS.gene009762:intron 45.0%
ATCTCCTGGTTGACCATTCA+TGG + chr5.3:58065605-58065624 None:intergenic 45.0%
ATGTGTAACTTCCACCTGGT+TGG + chr5.3:58064965-58064984 None:intergenic 45.0%
CAAGAGAGAGATATCGGACA+CGG + chr5.3:58067030-58067049 None:intergenic 45.0%
CAGTGGATGGAGATGTTGTA+AGG + chr5.3:58064750-58064769 None:intergenic 45.0%
CCAATAGTATTCCTCACAGG+TGG + chr5.3:58066758-58066777 None:intergenic 45.0%
CCACCTGTGAGGAATACTAT+TGG - chr5.3:58066755-58066774 MS.gene009762:CDS 45.0%
CCTTGACACCTTGGACTATT+AGG + chr5.3:58066368-58066387 None:intergenic 45.0%
CGATGATAGTTACCAGTGGA+TGG + chr5.3:58064763-58064782 None:intergenic 45.0%
CTGCAACTGCATTCACATCA+AGG - chr5.3:58066252-58066271 MS.gene009762:intron 45.0%
CTTACAACATCTCCATCCAC+TGG - chr5.3:58064748-58064767 MS.gene009762:intron 45.0%
GAAATGTTCCTAGGGGTTTG+TGG - chr5.3:58066540-58066559 MS.gene009762:intron 45.0%
GAACATCTGTAGAGATCTCC+TGG + chr5.3:58065619-58065638 None:intergenic 45.0%
GATCACCCTATGCATGTTCA+TGG - chr5.3:58066653-58066672 MS.gene009762:CDS 45.0%
GCTGGCAAAATAGGTCTTGA+AGG + chr5.3:58066206-58066225 None:intergenic 45.0%
GGAACCCATGAACATGCATA+GGG + chr5.3:58066661-58066680 None:intergenic 45.0%
GGCAAAATAGGTCTTGAAGG+TGG + chr5.3:58066203-58066222 None:intergenic 45.0%
GGCTTACTGCGTGACTATAT+AGG - chr5.3:58065353-58065372 MS.gene009762:CDS 45.0%
GGTTCTATAGCTAGAGCACA+TGG + chr5.3:58066866-58066885 None:intergenic 45.0%
GGTTTGTGGACACCTAGAAA+AGG - chr5.3:58066554-58066573 MS.gene009762:intron 45.0%
GTCAAATGCAGCATTCATGG+CGG + chr5.3:58066141-58066160 None:intergenic 45.0%
GTGACGATGATAGTTACCAG+TGG + chr5.3:58064767-58064786 None:intergenic 45.0%
TAACTTCCACCTGGTTGGAT+TGG + chr5.3:58064960-58064979 None:intergenic 45.0%
TACACCATGAATGGTCAACC+AGG - chr5.3:58065598-58065617 MS.gene009762:CDS 45.0%
TGATGTGAATGCAGTTGCAG+TGG + chr5.3:58066252-58066271 None:intergenic 45.0%
TGGAACCCATGAACATGCAT+AGG + chr5.3:58066662-58066681 None:intergenic 45.0%
TGGCTGCATGAGATTGTTGT+TGG + chr5.3:58065214-58065233 None:intergenic 45.0%
TGTCTTTGTGCAACAGGCAT+GGG - chr5.3:58064880-58064899 MS.gene009762:CDS 45.0%
TTCCTAAGAGCCACTGTCTA+TGG - chr5.3:58065041-58065060 MS.gene009762:CDS 45.0%
TTTGACCTGGTCCTATCATG+AGG + chr5.3:58066049-58066068 None:intergenic 45.0%
! ATGAGGACTCTAGTGTTGGA+AGG + chr5.3:58066032-58066051 None:intergenic 45.0%
! CCTAATAGTCCAAGGTGTCA+AGG - chr5.3:58066365-58066384 MS.gene009762:intron 45.0%
! CTGTCGATTGGATAAGACGA+CGG - chr5.3:58065236-58065255 MS.gene009762:CDS 45.0%
! GTGGCCGTGTCGTTAAAAAA+TGG + chr5.3:58066233-58066252 None:intergenic 45.0%
! TAGCATTGAGGTAGATCTGG+TGG + chr5.3:58067237-58067256 None:intergenic 45.0%
! TGTTTCATTTGCTGCAGCAG+AGG - chr5.3:58064485-58064504 MS.gene009762:CDS 45.0%
! TTGAGAAATCCATGGGCTGA+TGG - chr5.3:58064912-58064931 MS.gene009762:CDS 45.0%
!! GGAGGTATCACTGACTGTAA+TGG + chr5.3:58067213-58067232 None:intergenic 45.0%
ACTATTGGAACACCTCCTGG+TGG - chr5.3:58066770-58066789 MS.gene009762:CDS 50.0%
AGAGTCCTCATGATAGGACC+AGG - chr5.3:58066041-58066060 MS.gene009762:intron 50.0%
ATGCAGCATTCATGGCGGTT+TGG + chr5.3:58066136-58066155 None:intergenic 50.0%
CAATGTCCAATCCAACCAGG+TGG - chr5.3:58064951-58064970 MS.gene009762:CDS 50.0%
CATTGAGGTAGATCTGGTGG+TGG + chr5.3:58067234-58067253 None:intergenic 50.0%
CCATTTGGTCCTTGACACCT+TGG + chr5.3:58066377-58066396 None:intergenic 50.0%
CGGTATGTGTAACTTCCACC+TGG + chr5.3:58064969-58064988 None:intergenic 50.0%
CGTTTCAACGCCGATAATCC+AGG - chr5.3:58066806-58066825 MS.gene009762:intron 50.0%
CTCCATAGACAGTGGCTCTT+AGG + chr5.3:58065046-58065065 None:intergenic 50.0%
CTCTACAGATGTTCCAGCCA+AGG - chr5.3:58065625-58065644 MS.gene009762:CDS 50.0%
GCCACCATAGTGTTCCTTCT+TGG + chr5.3:58065007-58065026 None:intergenic 50.0%
GTCTTATCCAATCGACAGCG+TGG + chr5.3:58065234-58065253 None:intergenic 50.0%
GTGGTTGATCAGCTGTGACA+AGG + chr5.3:58066082-58066101 None:intergenic 50.0%
GTGTCTTTGTGCAACAGGCA+TGG - chr5.3:58064879-58064898 MS.gene009762:CDS 50.0%
TAACTAGGTCCATCAGCCCA+TGG + chr5.3:58064924-58064943 None:intergenic 50.0%
TCGACAAGGTTGAACGTAGC+AGG + chr5.3:58066734-58066753 None:intergenic 50.0%
TGGTCCAACAATCGAAGCGA+GGG - chr5.3:58064686-58064705 MS.gene009762:intron 50.0%
! AGCGAGGGACGGAGATTTTA+TGG - chr5.3:58064701-58064720 MS.gene009762:intron 50.0%
! CCAAGGTGTCAAGGACCAAA+TGG - chr5.3:58066374-58066393 MS.gene009762:intron 50.0%
! GGGTTTGGCAACAGCACTTT+TGG - chr5.3:58067170-58067189 MS.gene009762:intron 50.0%
ACCACCTGGCCGATACTACA+TGG - chr5.3:58066097-58066116 MS.gene009762:CDS 55.0%
ACCTGGCCGATACTACATGG+CGG - chr5.3:58066100-58066119 MS.gene009762:CDS 55.0%
ACCTTGTCGATCCACCTGTG+AGG - chr5.3:58066744-58066763 MS.gene009762:CDS 55.0%
CACGCAGTAAGCCACATCAG+TGG + chr5.3:58065346-58065365 None:intergenic 55.0%
CCAACAATCGAAGCGAGGGA+CGG - chr5.3:58064690-58064709 MS.gene009762:intron 55.0%
CTAGGTGTCCACAAACCCCT+AGG + chr5.3:58066551-58066570 None:intergenic 55.0%
CTATGGTGGCATGCTCACAC+TGG - chr5.3:58065017-58065036 MS.gene009762:CDS 55.0%
CTCGCTTCGATTGTTGGACC+AGG + chr5.3:58064687-58064706 None:intergenic 55.0%
CTGGTCCAACAATCGAAGCG+AGG - chr5.3:58064685-58064704 MS.gene009762:intron 55.0%
GTCACAGCTGATCAACCACC+TGG - chr5.3:58066083-58066102 MS.gene009762:CDS 55.0%
TCCTCACAGGTGGATCGACA+AGG + chr5.3:58066748-58066767 None:intergenic 55.0%
TGTGCAACAGGCATGGGCTT+AGG - chr5.3:58064886-58064905 MS.gene009762:CDS 55.0%
TTGGAACACCTCCTGGTGGA+TGG - chr5.3:58066774-58066793 MS.gene009762:CDS 55.0%
! TGGAACACCTCCTGGTGGAT+GGG - chr5.3:58066775-58066794 MS.gene009762:CDS 55.0%
!! TGAGGTAGATCTGGTGGTGG+AGG + chr5.3:58067231-58067250 None:intergenic 55.0%
CATGCAGCCACGCTGTCGAT+TGG - chr5.3:58065224-58065243 MS.gene009762:CDS 60.0%
CCGTCCCTCGCTTCGATTGT+TGG + chr5.3:58064693-58064712 None:intergenic 60.0%
CGCGTGCCGCCATGTAGTAT+CGG + chr5.3:58066109-58066128 None:intergenic 60.0%
! AACACCTCCTGGTGGATGGG+TGG - chr5.3:58066778-58066797 MS.gene009762:CDS 60.0%
!! GCCATGTAGTATCGGCCAGG+TGG + chr5.3:58066101-58066120 None:intergenic 60.0%
ATGGCCACCCATCCACCAGG+AGG + chr5.3:58066785-58066804 None:intergenic 65.0%
CGAATGGCCACCCATCCACC+AGG + chr5.3:58066788-58066807 None:intergenic 65.0%
!! GCCGCCATGTAGTATCGGCC+AGG + chr5.3:58066104-58066123 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 58064441 58067257 58064441 ID=MS.gene009762
chr5.3 mRNA 58064441 58067257 58064441 ID=MS.gene009762.t1;Parent=MS.gene009762
chr5.3 exon 58067171 58067257 58067171 ID=MS.gene009762.t1.exon1;Parent=MS.gene009762.t1
chr5.3 CDS 58067171 58067257 58067171 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
chr5.3 exon 58066929 58067080 58066929 ID=MS.gene009762.t1.exon2;Parent=MS.gene009762.t1
chr5.3 CDS 58066929 58067080 58066929 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
chr5.3 exon 58066558 58066802 58066558 ID=MS.gene009762.t1.exon3;Parent=MS.gene009762.t1
chr5.3 CDS 58066558 58066802 58066558 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
chr5.3 exon 58066052 58066180 58066052 ID=MS.gene009762.t1.exon4;Parent=MS.gene009762.t1
chr5.3 CDS 58066052 58066180 58066052 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
chr5.3 exon 58064871 58065806 58064871 ID=MS.gene009762.t1.exon5;Parent=MS.gene009762.t1
chr5.3 CDS 58064871 58065806 58064871 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
chr5.3 exon 58064441 58064571 58064441 ID=MS.gene009762.t1.exon6;Parent=MS.gene009762.t1
chr5.3 CDS 58064441 58064571 58064441 ID=cds.MS.gene009762.t1;Parent=MS.gene009762.t1
Gene Sequence

>MS.gene009762

ATGAAGACTATTTTATGCTACTTACTTGGCTTACTTACTATCATTGTTTCATTTGCTGCAGCAGAGGAGCATTACCATCAGTTTGTTGTAAGTGTTTGTTTGATGATCACATTCATATATATATGTTTGTACCAATTTGCAACTGTATTAACTAACTTTAATGATTGCTGGAAATAGATTCAAACTGCAACAGTGAAGAGGCTGTGCAAAACACAAAGGATACTCACGGTAAATGGACAGTTTCCTGGTCCAACAATCGAAGCGAGGGACGGAGATTTTATGGTGATCAAAGTAACAAATGCTGGACCTTACAACATCTCCATCCACTGGTAACTATCATCGTCACTCGTCCTCATTATGGTCTTAAATACTTGTATGATAAGCGCTTAATTAACCCGTTTATCCAAACATTCACTATGTTCCTGACAATCTTCTTATGTGTCTTTGTGCAACAGGCATGGGCTTAGGATGTTGAGAAATCCATGGGCTGATGGACCTAGTTATGTGACACAATGTCCAATCCAACCAGGTGGAAGTTACACATACCGATTTACAATTCAAAACCAAGAAGGAACACTATGGTGGCATGCTCACACTGGTTTCCTAAGAGCCACTGTCTATGGAGCTTTCATTATTTATCCGAAAATGGGTTCTCCTTATCCTTTCTCTAAGCCAACTAGAGAATTTCCCATTCTTCTTGGTAATCTTCAAAACCATCACTTTAAGAGAGCTAGTTTGATAAACCTTTCGAAATAGGATTTGAATTGAGTCCAACAACAATCTCATGCAGCCACGCTGTCGATTGGATAAGACGACGGTCCAAATTTCAATTCGGATTTGGATTTTTTTTCAGAAACTAAACACCGAGCTTGAAATATGGACCATTCGATCTTTATCAATGGCCACTGATGTGGCTTACTGCGTGACTATATAGGATTGCGACTGCACACAACCCAAATCCCTAAAAAAAAATACTCAAACAAATCTTACAATGATTATGAACTTTTCTAACAATAGCTTTTTGTATATAAGTAAAGGCAGGGCCATATTGACAGAATGTGTTTTTATGATGCATAGGGGAATGGTTTGATAGAGATCCAATGGCTCTCTTAAGACAAACACAGTTCACAGGAGCACCTCCAAATGTATCTATTGCATACACCATGAATGGTCAACCAGGAGATCTCTACAGATGTTCCAGCCAAGGTTTGAAATCATTCTAATTCGCCATTACTTCCATACATCGTTTTAAATTGCAGCTGCAGTCGTAGTTTCGCTGCAAACCTTTATATTGCAGCTAAATGTGGATGATGCAGTCAAAATTATGATTACCATACTGTTGCAAAAAACTCAAAATCATTTATATTACGGTTGCAGACCATAATTTAGAACTCATTTTTCGTACTCGTTGATAAAAAAGTGACTAAAGGTATAAAACAATTACAATGTAGGAACCGTACGTTTTCAAGTCTATGCCGGAGAAACAATTCTCTTAAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTTTCAATTGCTAACCACAGAATGACTGTTGTTGCTACGGATGCTGCTTACACAAAACCTTCCAACACTAGAGTCCTCATGATAGGACCAGGTCAAACAATCAATGTCCTTGTCACAGCTGATCAACCACCTGGCCGATACTACATGGCGGCACGCGCTTACCAAACCGCCATGAATGCTGCATTTGACAACACGACGACAACTGCAATTCTTGAATACCAAAATAGACCACCTTCAAGACCTATTTTGCCAGCTTTACCATTTTTTAACGACACGGCCACTGCAACTGCATTCACATCAAGGATTAGAGGACTTTCCAAAATTAAAGTCTTTCAAAATGTTGATGTGAGTTTATTGTTCACTGTAGGGTTAGGATTAATAAACTGCACAAATCCTAATAGTCCAAGGTGTCAAGGACCAAATGGAACAAGATTTGCAGCTAGTATAAACAACAACTCTTTTGTTCTTCCTAGAACAACTTCCTTAATGCAAGCTTACTATAATGGTGTTCCTGGTGTTTTTACCACAGATTTTCCTCCTGTTCCTCCTATACAGTTCAATTACACAGGAAATGTTCCTAGGGGTTTGTGGACACCTAGAAAAGGAACCAAGTTGTTCAAGTTGAAATATGGTTCCAATGTTCAGATTGTTTTGCAGGATACTAGTATAGTAACAATTGAGGATCACCCTATGCATGTTCATGGGTTCCATTTCTTTATAGTTGGTTCAGGTTTTGGAAATTTTAATCCAAGAACTGATCCTGCTACGTTCAACCTTGTCGATCCACCTGTGAGGAATACTATTGGAACACCTCCTGGTGGATGGGTGGCCATTCGTTTCAACGCCGATAATCCAGGTATAATGCATTTATGTTACTCATATACAAAGATGCCATGTGCTCTAGCTATAGAACCGATACGACACTGACATATGTGATAGCGTTCAATTAATTCATTTTTTTTTTAAAATTATTACTGATGTCAACGTATCAGTATCATGTCCGATGTTTGTGTCAGTGTTTTATAGGTCATGTGAATGTTTTTAAATCATGGTCGCCGTGTCCGATATCTCTCTCTTGCATAGTTTATACTAGGCTCTTAGCATTGTATGTATACTAACCAAATGTTGATTTTTGAATTCATTGTTGTGAATCAGGAATTTGGTTCTTGCATTGTCACATAGATTCACATCTCAATTGGGGTTTGGCAACAGCACTTTTGGTAGAAAATGGAGTTGGCCCATTACAGTCAGTGATACCTCCACCACCAGATCTACCTCAATGCTAA
Protein sequence

>MS.gene009762.t1

MKTILCYLLGLLTIIVSFAAAEEHYHQFVIQTATVKRLCKTQRILTVNGQFPGPTIEARDGDFMVIKVTNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIYPKMGSPYPFSKPTREFPILLGEWFDRDPMALLRQTQFTGAPPNVSIAYTMNGQPGDLYRCSSQGTVRFQVYAGETILLRIINSALNQELFFSIANHRMTVVATDAAYTKPSNTRVLMIGPGQTINVLVTADQPPGRYYMAARAYQTAMNAAFDNTTTTAILEYQNRPPSRPILPALPFFNDTATATAFTSRIRGLSKIKVFQNVDVSLLFTVGLGLINCTNPNSPRCQGPNGTRFAASINNNSFVLPRTTSLMQAYYNGVPGVFTTDFPPVPPIQFNYTGNVPRGLWTPRKGTKLFKLKYGSNVQIVLQDTSIVTIEDHPMHVHGFHFFIVGSGFGNFNPRTDPATFNLVDPPVRNTIGTPPGGWVAIRFNADNPGIWFLHCHIDSHLNWGLATALLVENGVGPLQSVIPPPPDLPQC