Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009902.t1 | XP_013467478.1 | 74.2 | 1210 | 292 | 4 | 1 | 1196 | 1 | 1204 | 0.00E+00 | 1504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009902.t1 | Q56YN8 | 59.2 | 1209 | 472 | 5 | 1 | 1194 | 1 | 1203 | 0.0e+00 | 1228.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009902.t1 | A0A072VIT6 | 74.2 | 1210 | 292 | 4 | 1 | 1196 | 25 | 1228 | 0.0e+00 | 1504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036083 | MS.gene009902 | PPI |
| MS.gene009902 | MS.gene056169 | PPI |
| MS.gene009902 | MS.gene024068 | PPI |
| MS.gene009902 | MS.gene016667 | PPI |
| MS.gene009902 | MS.gene45748 | PPI |
| MS.gene009902 | MS.gene033508 | PPI |
| MS.gene009902 | MS.gene058789 | PPI |
| MS.gene009902 | MS.gene95250 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009902.t1 | MTR_1g051825 | 81.488 | 1210 | 204 | 4 | 1 | 1196 | 1 | 1204 | 0.0 | 1927 |
| MS.gene009902.t1 | MTR_1g051825 | 81.488 | 1210 | 204 | 4 | 1 | 1196 | 25 | 1228 | 0.0 | 1924 |
| MS.gene009902.t1 | MTR_3g110058 | 61.140 | 579 | 170 | 7 | 122 | 697 | 1 | 527 | 0.0 | 619 |
| MS.gene009902.t1 | MTR_3g110055 | 67.257 | 452 | 130 | 3 | 696 | 1129 | 3 | 454 | 0.0 | 550 |
| MS.gene009902.t1 | MTR_5g086975 | 52.734 | 256 | 47 | 4 | 247 | 502 | 65 | 246 | 4.05e-60 | 208 |
| MS.gene009902.t1 | MTR_8g037325 | 24.348 | 1265 | 746 | 45 | 1 | 1164 | 1 | 1155 | 1.49e-57 | 218 |
| MS.gene009902.t1 | MTR_8g072890 | 22.222 | 1314 | 795 | 41 | 1 | 1187 | 14 | 1227 | 1.69e-39 | 160 |
| MS.gene009902.t1 | MTR_5g087290 | 76.623 | 77 | 18 | 0 | 426 | 502 | 1 | 77 | 1.25e-30 | 117 |
| MS.gene009902.t1 | MTR_7g091420 | 24.936 | 389 | 232 | 10 | 1 | 359 | 9 | 367 | 1.20e-16 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009902.t1 | AT2G27170 | 62.645 | 1210 | 431 | 5 | 1 | 1195 | 1 | 1204 | 0.0 | 1464 |
| MS.gene009902.t1 | AT2G27170 | 62.645 | 1210 | 431 | 5 | 1 | 1195 | 1 | 1204 | 0.0 | 1464 |
| MS.gene009902.t1 | AT2G27170 | 61.333 | 1050 | 398 | 2 | 1 | 1042 | 1 | 1050 | 0.0 | 1253 |
| MS.gene009902.t1 | AT2G27170 | 61.333 | 1050 | 398 | 2 | 1 | 1042 | 1 | 1050 | 0.0 | 1253 |
| MS.gene009902.t1 | AT3G47460 | 32.432 | 222 | 140 | 6 | 1 | 215 | 1 | 219 | 7.70e-28 | 122 |
| MS.gene009902.t1 | AT3G47460 | 32.432 | 222 | 140 | 6 | 1 | 215 | 1 | 219 | 8.47e-28 | 122 |
| MS.gene009902.t1 | AT5G62410 | 30.116 | 259 | 163 | 7 | 1 | 243 | 1 | 257 | 1.75e-27 | 121 |
| MS.gene009902.t1 | AT5G48600 | 22.567 | 709 | 459 | 22 | 1 | 655 | 24 | 696 | 8.66e-20 | 96.7 |
| MS.gene009902.t1 | AT5G48600 | 22.567 | 709 | 459 | 22 | 1 | 655 | 24 | 696 | 1.06e-19 | 96.3 |
| MS.gene009902.t1 | AT3G54670 | 23.009 | 678 | 390 | 21 | 522 | 1119 | 519 | 1144 | 1.22e-17 | 89.7 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAATCTCAAAACATTTC+TGG | 0.160443 | 5.3:+55770286 | MS.gene009902:CDS |
| CCTTGTTGTACAACATAATA+TGG | 0.190231 | 5.3:-55764797 | None:intergenic |
| TTGAACTTCTTTGTTATATA+TGG | 0.195435 | 5.3:-55765577 | None:intergenic |
| AATCATCTTAACCGACAAAA+AGG | 0.214785 | 5.3:+55770659 | MS.gene009902:CDS |
| CAAATTATTCTCCAGATCTT+TGG | 0.251481 | 5.3:-55767029 | None:intergenic |
| AAGAGTATACCAAGAAAATA+AGG | 0.255492 | 5.3:+55774286 | MS.gene009902:CDS |
| CCGGACAATTTGTTCGAAAA+AGG | 0.266191 | 5.3:+55764547 | MS.gene009902:CDS |
| ACAAGTGCTTTAGAAAATAA+TGG | 0.275883 | 5.3:-55773364 | None:intergenic |
| TTGTATATTATAGGTCCTTA+TGG | 0.278779 | 5.3:+55769281 | MS.gene009902:intron |
| TTACCAACACAGTTAACTTT+AGG | 0.286165 | 5.3:-55762356 | None:intergenic |
| TAAGCTGTTCAATCTGATTC+TGG | 0.295580 | 5.3:-55773532 | None:intergenic |
| ACTGTCAGCATTCTGCTTAA+TGG | 0.299928 | 5.3:-55772210 | None:intergenic |
| ACCTCCCGACAACTGCTTCA+TGG | 0.303146 | 5.3:-55777370 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.309154 | 5.3:+55764965 | MS.gene009902:CDS |
| TGAAATTGAAGGCCTTAAAA+AGG | 0.314098 | 5.3:+55773649 | MS.gene009902:CDS |
| TGCATGAGAAATATAATTTC+AGG | 0.314429 | 5.3:+55777939 | MS.gene009902:CDS |
| TCAAAGATGAAATTAATAAA+TGG | 0.315740 | 5.3:+55774096 | MS.gene009902:CDS |
| CAGGTTAGCAACTCAATAAT+TGG | 0.323752 | 5.3:-55770319 | None:intergenic |
| CAAAACATTTCTGGAGTTCA+TGG | 0.331205 | 5.3:+55770295 | MS.gene009902:CDS |
| TCCACAAATGCAGATAAAAC+TGG | 0.333767 | 5.3:-55763198 | None:intergenic |
| AACAGTTATCTGCAAGAATC+TGG | 0.344787 | 5.3:+55771971 | MS.gene009902:CDS |
| CAGACACAAAATGCTGATTA+AGG | 0.350936 | 5.3:+55778470 | MS.gene009902:CDS |
| TGATGAGATTGATGCTGCTT+TGG | 0.351240 | 5.3:+55777464 | MS.gene009902:CDS |
| AACTGAAGTGATGAATTTAC+TGG | 0.352491 | 5.3:+55764748 | MS.gene009902:CDS |
| CAGAGGCTTTCATCAAGGTT+AGG | 0.353698 | 5.3:-55764937 | None:intergenic |
| AAAGGTGTTGCTATGCATTT+CGG | 0.353997 | 5.3:+55775283 | MS.gene009902:CDS |
| TTTCAACATGTTCATTAAAC+AGG | 0.356991 | 5.3:+55762079 | None:intergenic |
| TACCAAGAAAATAAGGGAAC+TGG | 0.370065 | 5.3:+55774293 | MS.gene009902:CDS |
| CGAGTATAATAGAAAACTTC+AGG | 0.372965 | 5.3:+55774203 | MS.gene009902:CDS |
| TTTGATACTTCAGAAACCTT+TGG | 0.377293 | 5.3:-55766968 | None:intergenic |
| AAAAGAAGCAATGGATGAAC+TGG | 0.387455 | 5.3:+55767334 | MS.gene009902:CDS |
| AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 5.3:+55778371 | MS.gene009902:CDS |
| TTCTAAAGCACTTGTAAAGA+AGG | 0.389908 | 5.3:+55773372 | MS.gene009902:CDS |
| AGCATCAACCTTCTGCTTCT+CGG | 0.391981 | 5.3:-55773272 | None:intergenic |
| TAGAACAAAGATTAATACTT+TGG | 0.393318 | 5.3:+55769100 | MS.gene009902:CDS |
| TCAGGAAGAAGCTAAAGAAT+TGG | 0.400137 | 5.3:+55774221 | MS.gene009902:CDS |
| TGCTCTAGAATTCATTAATC+AGG | 0.401763 | 5.3:+55778445 | MS.gene009902:CDS |
| TTCTTTCTCCCTGCTCCATA+AGG | 0.418106 | 5.3:-55769296 | None:intergenic |
| TAAAGAATTGGAGCAATTGC+TGG | 0.419077 | 5.3:+55774233 | MS.gene009902:CDS |
| AGTCTCAATGATACAATTCC+TGG | 0.423849 | 5.3:+55769370 | MS.gene009902:CDS |
| AATATTCTCTGAACTTGTAC+AGG | 0.424227 | 5.3:+55775309 | MS.gene009902:CDS |
| AGTCAAAGAGTCAGGAACTT+AGG | 0.426313 | 5.3:+55773900 | MS.gene009902:CDS |
| ACAGGGTGGCTATGGTCATT+TGG | 0.429090 | 5.3:+55775327 | MS.gene009902:CDS |
| GGAGATTGTTGATCTTGAAC+AGG | 0.433134 | 5.3:+55767788 | MS.gene009902:CDS |
| AAAGTATAATTGATCGAAAC+GGG | 0.433290 | 5.3:+55774060 | MS.gene009902:CDS |
| GAATCAGATTGAACAGCTTA+AGG | 0.440247 | 5.3:+55773535 | MS.gene009902:CDS |
| TGAACCAGACCATCATATAT+AGG | 0.445765 | 5.3:-55767368 | None:intergenic |
| AAGTATTAATCTTTGTTCTA+CGG | 0.445807 | 5.3:-55769097 | None:intergenic |
| TTGAAGTTACTGCAGGAAAC+AGG | 0.450106 | 5.3:+55770365 | MS.gene009902:CDS |
| AGAAGAAAAGAAAGCGGGGC+TGG | 0.453734 | 5.3:+55773784 | MS.gene009902:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.455404 | 5.3:-55770758 | None:intergenic |
| TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 5.3:-55778359 | None:intergenic |
| CTACACTCCAGCTTTCAATC+AGG | 0.456099 | 5.3:+55770790 | MS.gene009902:CDS |
| AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 5.3:+55764985 | MS.gene009902:CDS |
| TCAAAAGCATCTGATGTCAA+TGG | 0.456925 | 5.3:-55774318 | None:intergenic |
| CAGTCCTATATATGATGGTC+TGG | 0.457209 | 5.3:+55767364 | MS.gene009902:CDS |
| CGCTGTATCACATCTCTGTA+TGG | 0.459501 | 5.3:-55777427 | None:intergenic |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 5.3:+55772007 | MS.gene009902:CDS |
| TATTTGGCTGCAGTCTTTGG+AGG | 0.461113 | 5.3:+55774179 | MS.gene009902:intron |
| GAGAAAATAATGAAAGATAC+AGG | 0.463056 | 5.3:+55765025 | MS.gene009902:CDS |
| AGAGTATACCAAGAAAATAA+GGG | 0.463899 | 5.3:+55774287 | MS.gene009902:CDS |
| CTTCTAAATACCGTACAACT+TGG | 0.465610 | 5.3:-55765470 | None:intergenic |
| ACTCAGTATTCTCTATCAAA+AGG | 0.467229 | 5.3:+55767710 | MS.gene009902:CDS |
| GCAGTTGGTGCTAATGGATC+TGG | 0.467644 | 5.3:+55762833 | MS.gene009902:intron |
| GTCAAAGAGTCAGGAACTTA+GGG | 0.469685 | 5.3:+55773901 | MS.gene009902:CDS |
| ATTATAGGTCCTTATGGAGC+AGG | 0.473106 | 5.3:+55769287 | MS.gene009902:intron |
| TAATACTTTGGAATTTCAAA+CGG | 0.473321 | 5.3:+55769112 | MS.gene009902:CDS |
| AGAGGCTTTCATCAAGGTTA+GGG | 0.474689 | 5.3:-55764936 | None:intergenic |
| ATTCAACCCTTCACGTGACT+TGG | 0.477319 | 5.3:-55769135 | None:intergenic |
| GATGAAAGCCTCTGAGCGAT+TGG | 0.480648 | 5.3:+55764946 | MS.gene009902:CDS |
| AGTCCTAAAGTTAACTGTGT+TGG | 0.484406 | 5.3:+55762353 | MS.gene009902:CDS |
| CCCTTTGGCTTTGCTTCCCG+AGG | 0.484774 | 5.3:-55776672 | None:intergenic |
| CAGTCCATGAAGCAGTTGTC+GGG | 0.486486 | 5.3:+55777366 | MS.gene009902:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.487457 | 5.3:+55765548 | MS.gene009902:CDS |
| TATTTCTTCTTCAGGAGTAT+CGG | 0.488133 | 5.3:+55774037 | MS.gene009902:intron |
| GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 5.3:-55770701 | None:intergenic |
| GAACTTGTACAGGGTGGCTA+TGG | 0.490893 | 5.3:+55775319 | MS.gene009902:CDS |
| TGTCACTCCATATATCTTGT+CGG | 0.495905 | 5.3:-55778378 | None:intergenic |
| CCGTGATCAGTGGCTTCAAA+AGG | 0.499582 | 5.3:+55767767 | MS.gene009902:CDS |
| ACATGAGAAATCCAAAGATC+TGG | 0.499595 | 5.3:+55767018 | MS.gene009902:CDS |
| GTTATATATGGCATATTCCA+AGG | 0.501813 | 5.3:-55765565 | None:intergenic |
| CAAAAGCATCTGATGTCAAT+GGG | 0.501917 | 5.3:-55774317 | None:intergenic |
| TGATGCTGAGTCAAAGAGTC+AGG | 0.503666 | 5.3:+55773892 | MS.gene009902:CDS |
| CAGGAGAAGAAAACAAGAGC+TGG | 0.505253 | 5.3:+55773829 | MS.gene009902:CDS |
| AACTGGAACCATGAAATTGA+AGG | 0.505677 | 5.3:+55773638 | MS.gene009902:CDS |
| GAATCTGGATGTGGCTTCAA+AGG | 0.507465 | 5.3:+55771986 | MS.gene009902:CDS |
| ACTTAGGGATGCTAAAGGAT+TGG | 0.507728 | 5.3:+55773916 | MS.gene009902:CDS |
| TCATTTGGATATGATGAAGA+AGG | 0.509726 | 5.3:+55775342 | MS.gene009902:CDS |
| GGAACTAGATGAAGAGAAAG+AGG | 0.511213 | 5.3:+55765503 | MS.gene009902:CDS |
| TCGCTCAGAGGCTTTCATCA+AGG | 0.512814 | 5.3:-55764942 | None:intergenic |
| CTAATCTAACCACTAATCTC+AGG | 0.517505 | 5.3:+55773810 | MS.gene009902:CDS |
| AAAATCAGTCCTATATATGA+TGG | 0.518190 | 5.3:+55767359 | MS.gene009902:CDS |
| TCACATCAAAGAGGAGGACT+TGG | 0.518359 | 5.3:+55772235 | MS.gene009902:CDS |
| TTCTCTTTACAGGAAGGGGC+TGG | 0.525303 | 5.3:+55763171 | MS.gene009902:intron |
| GGTCTCACAGATAGACCAAA+AGG | 0.525758 | 5.3:+55773234 | MS.gene009902:intron |
| ATGAATTTACTGGAAAGTGC+TGG | 0.527499 | 5.3:+55764758 | MS.gene009902:CDS |
| CAGAAAGAAGAAAAGAAAGC+GGG | 0.529093 | 5.3:+55773779 | MS.gene009902:intron |
| AAGCTAACCTGATTGAAAGC+TGG | 0.529389 | 5.3:-55770797 | None:intergenic |
| GAAAGTATAATTGATCGAAA+CGG | 0.530577 | 5.3:+55774059 | MS.gene009902:CDS |
| TTGCAAGAATGATCGTATTG+AGG | 0.530772 | 5.3:+55773682 | MS.gene009902:CDS |
| ACTGCAGTTGAAGTTACTGC+AGG | 0.531496 | 5.3:+55770358 | MS.gene009902:CDS |
| ATCAAGACAAGGATGGTCCT+CGG | 0.532506 | 5.3:+55776655 | MS.gene009902:CDS |
| TCAATAGAACGCACTTTCAA+AGG | 0.535025 | 5.3:+55775265 | MS.gene009902:CDS |
| AGAACTTACGCAGTGAGGAT+AGG | 0.537005 | 5.3:+55763037 | MS.gene009902:CDS |
| TTTATGATCACAGACGATCA+AGG | 0.543698 | 5.3:+55772171 | MS.gene009902:CDS |
| TGAACTTGATGCAGGAAAAG+AGG | 0.544149 | 5.3:+55774767 | MS.gene009902:CDS |
| GAAAGAAATAAAAGAAGCAA+TGG | 0.545282 | 5.3:+55767325 | MS.gene009902:CDS |
| AGATATCACATTAACACGGC+TGG | 0.547116 | 5.3:-55778414 | None:intergenic |
| ACAGTCCATGAAGCAGTTGT+CGG | 0.548490 | 5.3:+55777365 | MS.gene009902:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 5.3:+55773314 | MS.gene009902:CDS |
| CCATATTATGTTGTACAACA+AGG | 0.554517 | 5.3:+55764797 | MS.gene009902:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.558384 | 5.3:+55774759 | MS.gene009902:CDS |
| CCACAGTACAGAACTGCTGT+TGG | 0.558872 | 5.3:+55777489 | MS.gene009902:CDS |
| TCAAGACAAGGATGGTCCTC+GGG | 0.560459 | 5.3:+55776656 | MS.gene009902:CDS |
| TGAGCGATTGGATTTACTGA+AGG | 0.561514 | 5.3:+55764958 | MS.gene009902:CDS |
| TTGCTTAATGTTGAAATGCA+TGG | 0.562252 | 5.3:+55769053 | MS.gene009902:CDS |
| CAGGAACTTAGGGATGCTAA+AGG | 0.564377 | 5.3:+55773911 | MS.gene009902:CDS |
| GCTCTCTTCAAACACGGCAC+AGG | 0.572042 | 5.3:+55767812 | MS.gene009902:CDS |
| ACTGAGAGCAGAAGTTGAGA+AGG | 0.575102 | 5.3:+55769339 | MS.gene009902:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 5.3:+55772002 | MS.gene009902:CDS |
| CAAACGGCCAAGTCACGTGA+AGG | 0.576112 | 5.3:+55769128 | MS.gene009902:CDS |
| ATTATATTTCTCATGCAATG+AGG | 0.576411 | 5.3:-55777933 | None:intergenic |
| CCTCCGTGGCAATTTGCTCT+CGG | 0.576502 | 5.3:-55762325 | None:intergenic |
| TTCTAAATACCGTACAACTT+GGG | 0.577194 | 5.3:-55765469 | None:intergenic |
| CCTCGGGAAGCAAAGCCAAA+GGG | 0.577461 | 5.3:+55776672 | MS.gene009902:CDS |
| CCACAAATGCAGATAAAACT+GGG | 0.578954 | 5.3:-55763197 | None:intergenic |
| AACAAATTACCCAAGTTGTA+CGG | 0.579284 | 5.3:+55765460 | MS.gene009902:CDS |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 5.3:+55772026 | MS.gene009902:CDS |
| AGTATTCTCTATCAAAAGGA+AGG | 0.583074 | 5.3:+55767714 | MS.gene009902:CDS |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 5.3:-55772162 | None:intergenic |
| GGGAGAGTAGAAAACTACAT+TGG | 0.588863 | 5.3:+55776693 | MS.gene009902:CDS |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 5.3:-55772018 | None:intergenic |
| ACCAAGAAAATAAGGGAACT+GGG | 0.589324 | 5.3:+55774294 | MS.gene009902:CDS |
| TAATTTGAAAGATATAATGA+AGG | 0.590282 | 5.3:+55767045 | MS.gene009902:CDS |
| TTGTACGGTATTTAGAAGAG+AGG | 0.592298 | 5.3:+55765475 | MS.gene009902:CDS |
| GCTGATGATGACTCTTTGCA+TGG | 0.599425 | 5.3:+55773869 | MS.gene009902:CDS |
| ATGTGCAGGATGTTAGAAGA+GGG | 0.599871 | 5.3:+55770242 | MS.gene009902:intron |
| TATCTGCAAGAATCTGGATG+TGG | 0.602042 | 5.3:+55771977 | MS.gene009902:CDS |
| TGAATTTACTGGAAAGTGCT+GGG | 0.602515 | 5.3:+55764759 | MS.gene009902:CDS |
| GAAACGGTCTTCTTGATGAG+AGG | 0.605497 | 5.3:+55769174 | MS.gene009902:CDS |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 5.3:+55773315 | MS.gene009902:CDS |
| AGATGAAATTAATAAATGGA+AGG | 0.606754 | 5.3:+55774100 | MS.gene009902:CDS |
| TTATGTTGTACAACAAGGAA+AGG | 0.607085 | 5.3:+55764802 | MS.gene009902:CDS |
| TTATAGGTCCTTATGGAGCA+GGG | 0.607493 | 5.3:+55769288 | MS.gene009902:intron |
| GTAAAGCTGCCCGTGATCAG+TGG | 0.608367 | 5.3:+55767757 | MS.gene009902:CDS |
| GTATGGCAAAGATAAGTGCA+AGG | 0.617710 | 5.3:-55777410 | None:intergenic |
| TGCTCAGCTAAAGCTTGCAG+AGG | 0.618147 | 5.3:+55765602 | MS.gene009902:CDS |
| TGAAATGCATGGCTGTGATA+CGG | 0.620886 | 5.3:+55769064 | MS.gene009902:CDS |
| ATCACTCAACACGAAACGAA+TGG | 0.624342 | 5.3:-55763007 | None:intergenic |
| TAATTCAGACAATCGTATCC+CGG | 0.625351 | 5.3:+55763233 | MS.gene009902:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 5.3:+55772022 | MS.gene009902:CDS |
| AACAGTGCTAGATCAACAGA+AGG | 0.627814 | 5.3:+55775237 | MS.gene009902:CDS |
| AAACGGCCAAGTCACGTGAA+GGG | 0.631549 | 5.3:+55769129 | MS.gene009902:CDS |
| CATTGACCATTTAACGCCAG+AGG | 0.631987 | 5.3:+55773598 | MS.gene009902:CDS |
| TCCTCGGGAAGCAAAGCCAA+AGG | 0.632169 | 5.3:+55776671 | MS.gene009902:CDS |
| GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 5.3:+55764990 | MS.gene009902:CDS |
| CTCTGTGGATAAGTGATGCG+TGG | 0.632709 | 5.3:-55770722 | None:intergenic |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.634923 | 5.3:+55773832 | MS.gene009902:CDS |
| CAGTAAATCCAATCGCTCAG+AGG | 0.636170 | 5.3:-55764954 | None:intergenic |
| TAGAATCATGAAGCACGAGA+AGG | 0.636405 | 5.3:+55767686 | MS.gene009902:intron |
| GATGATGATCAAGACAAGGA+TGG | 0.640563 | 5.3:+55776648 | MS.gene009902:CDS |
| AATGTGCAGGATGTTAGAAG+AGG | 0.642397 | 5.3:+55770241 | MS.gene009902:intron |
| CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 5.3:-55778355 | None:intergenic |
| CTTTCAGAACTTACGCAGTG+AGG | 0.651455 | 5.3:+55763032 | MS.gene009902:CDS |
| TCCATGAAGCAGTTGTCGGG+AGG | 0.652613 | 5.3:+55777369 | MS.gene009902:CDS |
| CTACATTGGAGTGAAAGTGA+AGG | 0.657266 | 5.3:+55776707 | MS.gene009902:CDS |
| TATGGCAAAGATAAGTGCAA+GGG | 0.657792 | 5.3:-55777409 | None:intergenic |
| GCAGAAAGAAGAAAAGAAAG+CGG | 0.658598 | 5.3:+55773778 | MS.gene009902:intron |
| AGGTGGAAGTGCACTTACGC+CGG | 0.660317 | 5.3:+55764528 | MS.gene009902:CDS |
| CTGTGAATAGGTTGACAAGG+TGG | 0.661440 | 5.3:+55764511 | MS.gene009902:intron |
| ATATTCTCTGAACTTGTACA+GGG | 0.661921 | 5.3:+55775310 | MS.gene009902:CDS |
| GATCATTCTTGCAAGCAACA+AGG | 0.666516 | 5.3:-55773673 | None:intergenic |
| TTACCGAGAGCAAATTGCCA+CGG | 0.669011 | 5.3:+55762322 | MS.gene009902:CDS |
| TTCTCTGAACTTGTACAGGG+TGG | 0.671057 | 5.3:+55775313 | MS.gene009902:CDS |
| CAGTATTCACATCAAAGAGG+AGG | 0.672571 | 5.3:+55772229 | MS.gene009902:CDS |
| CCGAGAGCAAATTGCCACGG+AGG | 0.678977 | 5.3:+55762325 | MS.gene009902:CDS |
| CTCGGGAAGCAAAGCCAAAG+GGG | 0.679367 | 5.3:+55776673 | MS.gene009902:CDS |
| ACAGGTGCTCTCTTCAAACA+CGG | 0.686036 | 5.3:+55767806 | MS.gene009902:CDS |
| GATTTACTGAAGGAAATAGG+TGG | 0.687534 | 5.3:+55764968 | MS.gene009902:CDS |
| GTATTTAGAAGAGAGGCTGA+AGG | 0.688568 | 5.3:+55765482 | MS.gene009902:CDS |
| TGACAGTATTCACATCAAAG+AGG | 0.689556 | 5.3:+55772226 | MS.gene009902:CDS |
| CCAACAGCAGTTCTGTACTG+TGG | 0.690057 | 5.3:-55777489 | None:intergenic |
| TTAGGATGATGATCAAGACA+AGG | 0.694709 | 5.3:+55776644 | MS.gene009902:intron |
| TGTCTGTGAATAGGTTGACA+AGG | 0.695392 | 5.3:+55764508 | MS.gene009902:intron |
| CTTGTAGGAGAAATCGCGTG+AGG | 0.698612 | 5.3:+55773505 | MS.gene009902:intron |
| GGTTGTTGAAAATGATGACA+AGG | 0.702620 | 5.3:+55770622 | MS.gene009902:CDS |
| AGAAAGAAGAAAAGAAAGCG+GGG | 0.716453 | 5.3:+55773780 | MS.gene009902:intron |
| GACATGATAGGTACAAACAG+AGG | 0.718579 | 5.3:+55774610 | MS.gene009902:intron |
| CAGAAGGTTGATGCTCAATG+CGG | 0.732146 | 5.3:+55773280 | MS.gene009902:CDS |
| TCTCAGATATCACATTAACA+CGG | 0.733641 | 5.3:-55778418 | None:intergenic |
| TTTAGGACTGAAATCCTCCG+TGG | 0.739596 | 5.3:-55762339 | None:intergenic |
| GGTTTGACATCAGAACTCTG+TGG | 0.762292 | 5.3:-55770737 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55762086 | 55778490 | 55762086 | ID=MS.gene009902 |
| chr5.3 | mRNA | 55762086 | 55778490 | 55762086 | ID=MS.gene009902.t1;Parent=MS.gene009902 |
| chr5.3 | exon | 55762086 | 55762100 | 55762086 | ID=MS.gene009902.t1.exon1;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55762086 | 55762100 | 55762086 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55762299 | 55762374 | 55762299 | ID=MS.gene009902.t1.exon2;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55762299 | 55762374 | 55762299 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55762837 | 55762875 | 55762837 | ID=MS.gene009902.t1.exon3;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55762837 | 55762875 | 55762837 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55763007 | 55763074 | 55763007 | ID=MS.gene009902.t1.exon4;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55763007 | 55763074 | 55763007 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55763183 | 55763254 | 55763183 | ID=MS.gene009902.t1.exon5;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55763183 | 55763254 | 55763183 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55764521 | 55764600 | 55764521 | ID=MS.gene009902.t1.exon6;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55764521 | 55764600 | 55764521 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55764745 | 55764823 | 55764745 | ID=MS.gene009902.t1.exon7;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55764745 | 55764823 | 55764745 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55764929 | 55765046 | 55764929 | ID=MS.gene009902.t1.exon8;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55764929 | 55765046 | 55764929 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55765448 | 55765623 | 55765448 | ID=MS.gene009902.t1.exon9;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55765448 | 55765623 | 55765448 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55766956 | 55767198 | 55766956 | ID=MS.gene009902.t1.exon10;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55766956 | 55767198 | 55766956 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55767293 | 55767414 | 55767293 | ID=MS.gene009902.t1.exon11;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55767293 | 55767414 | 55767293 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55767689 | 55767833 | 55767689 | ID=MS.gene009902.t1.exon12;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55767689 | 55767833 | 55767689 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55769026 | 55769198 | 55769026 | ID=MS.gene009902.t1.exon13;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55769026 | 55769198 | 55769026 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55769294 | 55769393 | 55769294 | ID=MS.gene009902.t1.exon14;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55769294 | 55769393 | 55769294 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55770250 | 55770386 | 55770250 | ID=MS.gene009902.t1.exon15;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55770250 | 55770386 | 55770250 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55770610 | 55770811 | 55770610 | ID=MS.gene009902.t1.exon16;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55770610 | 55770811 | 55770610 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55771960 | 55772047 | 55771960 | ID=MS.gene009902.t1.exon17;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55771960 | 55772047 | 55771960 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55772132 | 55772262 | 55772132 | ID=MS.gene009902.t1.exon18;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55772132 | 55772262 | 55772132 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55773244 | 55773393 | 55773244 | ID=MS.gene009902.t1.exon19;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55773244 | 55773393 | 55773244 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55773512 | 55773703 | 55773512 | ID=MS.gene009902.t1.exon20;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55773512 | 55773703 | 55773512 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55773782 | 55773965 | 55773782 | ID=MS.gene009902.t1.exon21;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55773782 | 55773965 | 55773782 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55774051 | 55774121 | 55774051 | ID=MS.gene009902.t1.exon22;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55774051 | 55774121 | 55774051 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55774192 | 55774343 | 55774192 | ID=MS.gene009902.t1.exon23;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55774192 | 55774343 | 55774192 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55774620 | 55774788 | 55774620 | ID=MS.gene009902.t1.exon24;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55774620 | 55774788 | 55774620 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55775220 | 55775363 | 55775220 | ID=MS.gene009902.t1.exon25;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55775220 | 55775363 | 55775220 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55776648 | 55776728 | 55776648 | ID=MS.gene009902.t1.exon26;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55776648 | 55776728 | 55776648 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55777339 | 55777513 | 55777339 | ID=MS.gene009902.t1.exon27;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55777339 | 55777513 | 55777339 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55777922 | 55777960 | 55777922 | ID=MS.gene009902.t1.exon28;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55777922 | 55777960 | 55777922 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| chr5.3 | exon | 55778321 | 55778490 | 55778321 | ID=MS.gene009902.t1.exon29;Parent=MS.gene009902.t1 |
| chr5.3 | CDS | 55778321 | 55778490 | 55778321 | ID=cds.MS.gene009902.t1;Parent=MS.gene009902.t1 |
| Gene Sequence |
| Protein sequence |
