Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016667.t1 | XP_013445069.1 | 95.7 | 1175 | 51 | 0 | 1 | 1175 | 1 | 1175 | 0.00E+00 | 1553.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016667.t1 | Q9SN90 | 77.9 | 1174 | 257 | 1 | 1 | 1174 | 1 | 1171 | 0.0e+00 | 1224.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016667.t1 | A0A072TZX1 | 95.7 | 1175 | 51 | 0 | 1 | 1175 | 1 | 1175 | 0.0e+00 | 1553.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016667.t1 | MTR_8g037325 | 98.298 | 1175 | 20 | 0 | 1 | 1175 | 1 | 1175 | 0.0 | 2347 |
MS.gene016667.t1 | MTR_1g051825 | 24.863 | 1279 | 752 | 45 | 1 | 1166 | 1 | 1183 | 1.58e-69 | 255 |
MS.gene016667.t1 | MTR_1g051825 | 24.863 | 1279 | 752 | 45 | 1 | 1166 | 25 | 1207 | 2.27e-69 | 255 |
MS.gene016667.t1 | MTR_8g072890 | 24.941 | 1263 | 769 | 49 | 1 | 1154 | 14 | 1206 | 1.33e-50 | 196 |
MS.gene016667.t1 | MTR_0003s0460 | 22.677 | 1270 | 772 | 45 | 3 | 1154 | 6 | 1183 | 4.60e-36 | 149 |
MS.gene016667.t1 | MTR_7g091420 | 25.587 | 426 | 236 | 13 | 1 | 400 | 9 | 379 | 2.64e-20 | 95.1 |
MS.gene016667.t1 | MTR_7g091430 | 25.532 | 658 | 369 | 26 | 567 | 1154 | 218 | 824 | 4.46e-17 | 87.4 |
MS.gene016667.t1 | MTR_1g069910 | 22.055 | 730 | 417 | 27 | 520 | 1154 | 519 | 1191 | 2.79e-13 | 75.1 |
MS.gene016667.t1 | MTR_3g110058 | 23.025 | 595 | 370 | 21 | 129 | 704 | 2 | 527 | 4.17e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016667.t1 | AT5G62410 | 77.021 | 1175 | 270 | 0 | 1 | 1175 | 1 | 1175 | 0.0 | 1796 |
MS.gene016667.t1 | AT3G47460 | 75.554 | 1174 | 287 | 0 | 1 | 1174 | 1 | 1174 | 0.0 | 1791 |
MS.gene016667.t1 | AT3G47460 | 75.383 | 1174 | 286 | 1 | 1 | 1174 | 1 | 1171 | 0.0 | 1779 |
MS.gene016667.t1 | AT2G27170 | 24.843 | 1272 | 762 | 40 | 1 | 1166 | 1 | 1184 | 3.64e-63 | 236 |
MS.gene016667.t1 | AT2G27170 | 24.843 | 1272 | 762 | 40 | 1 | 1166 | 1 | 1184 | 3.64e-63 | 236 |
MS.gene016667.t1 | AT2G27170 | 24.448 | 1133 | 689 | 36 | 1 | 1054 | 1 | 1045 | 2.69e-48 | 188 |
MS.gene016667.t1 | AT2G27170 | 24.448 | 1133 | 689 | 36 | 1 | 1054 | 1 | 1045 | 2.69e-48 | 188 |
MS.gene016667.t1 | AT5G48600 | 23.459 | 1249 | 802 | 42 | 1 | 1154 | 24 | 1213 | 6.24e-42 | 168 |
MS.gene016667.t1 | AT5G48600 | 23.562 | 1252 | 800 | 42 | 1 | 1154 | 24 | 1216 | 8.60e-42 | 167 |
MS.gene016667.t1 | AT3G54670 | 23.707 | 1295 | 733 | 46 | 3 | 1154 | 11 | 1193 | 4.26e-40 | 162 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTGCTCTTTCTCTGATTC+TGG | 0.152308 | 8.2:-62075251 | MS.gene016667:CDS |
GATTCGATTTGCTTCGTTCT+TGG | 0.165338 | 8.2:-62084029 | MS.gene016667:CDS |
AGGAACAAGTATTTGATAAA+TGG | 0.209184 | 8.2:-62082538 | MS.gene016667:CDS |
CTTCTCGCAATGGCTAATTT+TGG | 0.232238 | 8.2:+62081365 | None:intergenic |
AGCAGTCAACTGAGCTATTT+TGG | 0.235151 | 8.2:+62082036 | None:intergenic |
ACGTTTCCTTCACAAGATTC+TGG | 0.239221 | 8.2:+62081951 | None:intergenic |
TGCCGAAATTGCACTTTCTT+TGG | 0.256016 | 8.2:-62080557 | MS.gene016667:CDS |
CGGTAATAGTGTAGAAAATA+TGG | 0.311541 | 8.2:+62075399 | None:intergenic |
TCAAGAAAGCTGAATCCTTC+TGG | 0.316791 | 8.2:+62075352 | None:intergenic |
AATCGAGAAAGTAGGCTAAA+AGG | 0.327465 | 8.2:-62078086 | MS.gene016667:CDS |
AACCAAAGAAAGTGCAATTT+CGG | 0.330095 | 8.2:+62080555 | None:intergenic |
ACCTGCTCCACTTTATATCT+TGG | 0.331354 | 8.2:-62075212 | MS.gene016667:CDS |
ATCACTGGTTTAAACGGTTC+TGG | 0.333485 | 8.2:-62084068 | MS.gene016667:CDS |
TTCCAGCTTTGGAGAAGTTA+AGG | 0.343317 | 8.2:-62082261 | MS.gene016667:CDS |
TATTGTTCCTTTAGTGACTT+TGG | 0.344973 | 8.2:-62075424 | MS.gene016667:intron |
GAAGGCCTCTGCCATTAAAA+AGG | 0.348915 | 8.2:-62081689 | MS.gene016667:CDS |
CACAATTGAAACAGTAGCTT+TGG | 0.355453 | 8.2:+62083932 | None:intergenic |
CTTGAGGTTAAAGTTGCATT+TGG | 0.356297 | 8.2:-62075325 | MS.gene016667:CDS |
CGCAATCAAGGCTTGAGAAA+AGG | 0.357272 | 8.2:-62076081 | MS.gene016667:intron |
CAGCCAAGTGGTCTTCTGAC+TGG | 0.360379 | 8.2:-62079213 | MS.gene016667:CDS |
CCAGGTAAAACGAATGGAAT+TGG | 0.372517 | 8.2:-62076376 | MS.gene016667:intron |
GTCATCAATCTCGGTTATCT+TGG | 0.374265 | 8.2:+62082099 | None:intergenic |
GGAACAAGTATTTGATAAAT+GGG | 0.377570 | 8.2:-62082537 | MS.gene016667:CDS |
CGTTTCCTTCACAAGATTCT+GGG | 0.383248 | 8.2:+62081952 | None:intergenic |
TCAGGAGATACTTCCAGCTT+TGG | 0.383477 | 8.2:-62082272 | MS.gene016667:CDS |
GAAGGATTCAGCTTTCTTGA+TGG | 0.383695 | 8.2:-62075349 | MS.gene016667:CDS |
AAGCTTCAGGCTGAACAATC+AGG | 0.383967 | 8.2:-62076210 | MS.gene016667:CDS |
ATACACAAGCTCTTGAAGAT+TGG | 0.385385 | 8.2:+62083977 | None:intergenic |
AATGCAATGGAATACGTCTT+TGG | 0.389504 | 8.2:-62080263 | MS.gene016667:CDS |
AGCCAAGTGGTCTTCTGACT+GGG | 0.390511 | 8.2:-62079212 | MS.gene016667:CDS |
GGAGCATGAAAAGGAATATC+AGG | 0.392844 | 8.2:-62081608 | MS.gene016667:intron |
TCCTTACAAAGAGGGTGAAA+TGG | 0.395557 | 8.2:-62081223 | MS.gene016667:CDS |
AACGCAATCACTGGTTTAAA+CGG | 0.396393 | 8.2:-62084074 | MS.gene016667:CDS |
CAGTGATTGCGTTGAAGAAT+CGG | 0.396992 | 8.2:+62084084 | None:intergenic |
ACCACAAGTGTCACTCTTGA+AGG | 0.399661 | 8.2:-62079246 | MS.gene016667:CDS |
TATCCAGGAGCAAGCTTCCT+TGG | 0.399878 | 8.2:-62076984 | MS.gene016667:CDS |
AGAAAGTAGGCTAAAAGGTT+TGG | 0.400704 | 8.2:-62078081 | MS.gene016667:CDS |
ACAACGAACCTGTGTCAAAT+TGG | 0.403796 | 8.2:+62084001 | None:intergenic |
TTCCTTAACTTCTCCAAAGC+TGG | 0.407122 | 8.2:+62082259 | None:intergenic |
TATGGTGGATGTTAAAGAAA+TGG | 0.409848 | 8.2:-62082062 | MS.gene016667:CDS |
TCAACAAGCTGCTGTTAGAT+TGG | 0.411671 | 8.2:-62080692 | MS.gene016667:intron |
TCCATTTCACCCTCTTTGTA+AGG | 0.412254 | 8.2:+62081222 | None:intergenic |
GATGTTGAAAATATCAAAAC+AGG | 0.415509 | 8.2:-62081258 | MS.gene016667:CDS |
GCAACACGCACAGTCGTTCC+TGG | 0.415891 | 8.2:-62084113 | MS.gene016667:CDS |
TAATCCTTCCTTGCATTATG+AGG | 0.416224 | 8.2:+62082443 | None:intergenic |
GGAAGAACTCGAGAAGCTTC+AGG | 0.419712 | 8.2:-62076223 | MS.gene016667:CDS |
CGATTCTTCAACGCAATCAC+TGG | 0.422548 | 8.2:-62084083 | MS.gene016667:CDS |
AAACAGTTGTTTGGTAAAAG+TGG | 0.429212 | 8.2:-62076288 | MS.gene016667:CDS |
GGAGAGGCTTGTAATGGAAA+TGG | 0.436064 | 8.2:-62077014 | MS.gene016667:CDS |
TTGAAGAATCGGTCGAATCC+AGG | 0.437376 | 8.2:+62084095 | None:intergenic |
AAGTTGCATTTGGAAGTGTA+TGG | 0.438259 | 8.2:-62075315 | MS.gene016667:CDS |
GAAAATGAAGCAGTGTGATA+AGG | 0.445351 | 8.2:-62076756 | MS.gene016667:CDS |
TGTGTTTGATAATTCTGAAA+GGG | 0.445875 | 8.2:-62083913 | MS.gene016667:CDS |
AGAGTAATCTTGAAAGGAAG+AGG | 0.446630 | 8.2:-62076682 | MS.gene016667:CDS |
AACTCTTGAGGGAACAGTAT+AGG | 0.451920 | 8.2:+62080714 | None:intergenic |
GACCTATCAAAGTTCTTGAC+AGG | 0.454427 | 8.2:+62081003 | None:intergenic |
AGAATCAATTAAAGTCAAAA+CGG | 0.455138 | 8.2:-62081326 | MS.gene016667:CDS |
GAAAGGGGTCGCAGTCCGCT+TGG | 0.455344 | 8.2:-62083897 | MS.gene016667:CDS |
AATCAACAAGCTTCTTGATC+AGG | 0.456013 | 8.2:-62082290 | MS.gene016667:CDS |
GCAATCAAGGCTTGAGAAAA+GGG | 0.458181 | 8.2:-62076080 | MS.gene016667:intron |
TCAAGCATAGACAATATCTC+TGG | 0.460101 | 8.2:+62082397 | None:intergenic |
AATGAAATCTCTGTCGGATA+AGG | 0.460698 | 8.2:-62081987 | MS.gene016667:CDS |
GTTTATTGTGGTGTCACTAA+AGG | 0.462324 | 8.2:-62072241 | MS.gene016667:CDS |
CAGCTTTCTTGATGGTCTTG+AGG | 0.462965 | 8.2:-62075341 | MS.gene016667:CDS |
AAAGGGGTCGCAGTCCGCTT+GGG | 0.469174 | 8.2:-62083896 | MS.gene016667:CDS |
GCAGCTTGTTGAACTCTTGA+GGG | 0.469446 | 8.2:+62080703 | None:intergenic |
ATTGTAACGCTGATTTAGAT+AGG | 0.469586 | 8.2:-62082207 | MS.gene016667:CDS |
TGAAAATATCAAAACAGGAT+TGG | 0.469652 | 8.2:-62081253 | MS.gene016667:CDS |
TGAGGAGCTCTCAAAGAGCC+TGG | 0.474669 | 8.2:-62081632 | MS.gene016667:CDS |
TTAGTTGTACGGAATGGAAA+AGG | 0.480194 | 8.2:+62082485 | None:intergenic |
GAATCAATTAAAGTCAAAAC+GGG | 0.481292 | 8.2:-62081325 | MS.gene016667:CDS |
TCTCCAAGGAAGCTTGCTCC+TGG | 0.485034 | 8.2:+62076981 | None:intergenic |
GTCATCTTCAAAAGACCTAA+AGG | 0.486816 | 8.2:-62078024 | MS.gene016667:intron |
ATTGTTCACATTTAGTTGTA+CGG | 0.488274 | 8.2:+62082474 | None:intergenic |
TGCTGAGAAGGAAGCAAGCA+TGG | 0.488461 | 8.2:-62082017 | MS.gene016667:CDS |
TCTAACTTGGCCATTGTGCC+CGG | 0.489559 | 8.2:+62075379 | None:intergenic |
ATCCTGTCAAGAACTTTGAT+AGG | 0.489717 | 8.2:-62081005 | MS.gene016667:CDS |
GAAATTGCACTTTCTTTGGT+TGG | 0.490717 | 8.2:-62080553 | MS.gene016667:CDS |
TCCTTCTGGAGGTTCTAACT+TGG | 0.491158 | 8.2:+62075366 | None:intergenic |
AACTCATCAAAGTGAAAGAT+AGG | 0.492152 | 8.2:-62080957 | MS.gene016667:CDS |
TGGTTATCAAGAAGAATTGA+AGG | 0.495383 | 8.2:-62080533 | MS.gene016667:intron |
TAATCTTGAAAGGAAGAGGA+TGG | 0.495805 | 8.2:-62076678 | MS.gene016667:CDS |
CTTAGCCATGTCATCAATCT+CGG | 0.496214 | 8.2:+62082090 | None:intergenic |
TTTGTTCCAGGTAAAACGAA+TGG | 0.496337 | 8.2:-62076382 | MS.gene016667:intron |
CTGATAGGTGGCATTTAGTC+GGG | 0.497381 | 8.2:-62079277 | MS.gene016667:intron |
ACGCAATCTCTCAGCATACT+TGG | 0.498016 | 8.2:-62081052 | MS.gene016667:CDS |
ACCTCGTCCAAGATATAAAG+TGG | 0.498991 | 8.2:+62075205 | None:intergenic |
TGGAGAAGTTAAGGAAAGAA+AGG | 0.499569 | 8.2:-62082252 | MS.gene016667:CDS |
TTACGTGTTCACTTTGGTCC+AGG | 0.500889 | 8.2:+62075835 | None:intergenic |
TCTTGAGAAGAAGCAGAGTA+AGG | 0.501074 | 8.2:-62082320 | MS.gene016667:CDS |
TGAAAAGGAGAGGCTTGTAA+TGG | 0.501869 | 8.2:-62077020 | MS.gene016667:CDS |
GTTATCAGAGATTGAGGCAA+AGG | 0.502725 | 8.2:-62078852 | MS.gene016667:intron |
TTAGGGACATGATAATGAAA+AGG | 0.506253 | 8.2:-62077035 | MS.gene016667:intron |
CTTTCAGTTCCTTCTCGCAA+TGG | 0.507756 | 8.2:+62081355 | None:intergenic |
GAGCCTGGAGGAGCATGAAA+AGG | 0.518225 | 8.2:-62081617 | MS.gene016667:CDS |
GGTGATGCAAAGATAGCAGT+TGG | 0.519540 | 8.2:-62081420 | MS.gene016667:CDS |
AACAGTTGTTTGGTAAAAGT+GGG | 0.519842 | 8.2:-62076287 | MS.gene016667:CDS |
AGCAGCTTGTTGAACTCTTG+AGG | 0.520161 | 8.2:+62080702 | None:intergenic |
AATTTCATTGCAGGTGGGCA+AGG | 0.521336 | 8.2:-62080584 | MS.gene016667:intron |
GTGTATAAGCAAGGTCAAGC+AGG | 0.522976 | 8.2:-62083960 | MS.gene016667:CDS |
CCTTGCATTATGAGGAAATG+TGG | 0.526412 | 8.2:+62082451 | None:intergenic |
AATGTATGAGACAAAGAAAG+AGG | 0.526643 | 8.2:-62082356 | MS.gene016667:CDS |
AACTTTCAGTGCATCAAAGT+AGG | 0.527776 | 8.2:-62078874 | MS.gene016667:CDS |
TGAAATTACAGTCACTAGAC+AGG | 0.528804 | 8.2:-62083859 | MS.gene016667:intron |
TCACATTTAGTTGTACGGAA+TGG | 0.529589 | 8.2:+62082479 | None:intergenic |
GGAAATGGAAGCTGTTATCC+AGG | 0.529804 | 8.2:-62076999 | MS.gene016667:CDS |
ATAAACTTACGTGTTCACTT+TGG | 0.531279 | 8.2:+62075829 | None:intergenic |
AGCTCAGTTGACTGCTGAGA+AGG | 0.531731 | 8.2:-62082029 | MS.gene016667:CDS |
CAAAGTTCTTGACAGGATCA+AGG | 0.533328 | 8.2:+62081010 | None:intergenic |
AAAATGAGCTCAAAGCTAGA+AGG | 0.533492 | 8.2:-62081284 | MS.gene016667:CDS |
TGAGCAAAACGAGCATCATA+AGG | 0.534411 | 8.2:-62078360 | MS.gene016667:intron |
AATGCAAGGAAGGATTACTA+AGG | 0.534567 | 8.2:-62082437 | MS.gene016667:CDS |
CTTTGATAGGTCAAAGGTGA+AGG | 0.534957 | 8.2:-62080992 | MS.gene016667:CDS |
CGTAGGATTTGAATCCTTCG+AGG | 0.535880 | 8.2:+62084135 | None:intergenic |
CAAGCATAGACAATATCTCT+GGG | 0.536394 | 8.2:+62082398 | None:intergenic |
TCCAAGATATAAAGTGGAGC+AGG | 0.537878 | 8.2:+62075211 | None:intergenic |
TTGAGCCACACACAAAACAT+AGG | 0.541500 | 8.2:-62072600 | MS.gene016667:CDS |
GTCTATGCTTGAGGAAGCTG+CGG | 0.541797 | 8.2:-62082386 | MS.gene016667:CDS |
TGACATGGCTAAGACAACTA+TGG | 0.542943 | 8.2:-62082080 | MS.gene016667:CDS |
AAATCACTTTCCACACTCCC+AGG | 0.545421 | 8.2:-62072565 | MS.gene016667:intron |
TCTGATAGGTGGCATTTAGT+CGG | 0.546853 | 8.2:-62079278 | MS.gene016667:intron |
CAAAATTAGCCATTGCGAGA+AGG | 0.550598 | 8.2:-62081364 | MS.gene016667:CDS |
ATGACAATAATCGAGAAAGT+AGG | 0.550766 | 8.2:-62078094 | MS.gene016667:CDS |
TTCCGGACAAAATTTGTCGA+TGG | 0.551293 | 8.2:-62072189 | MS.gene016667:CDS |
CTCGTGATCCTCGTAAAGCA+AGG | 0.552315 | 8.2:-62076245 | MS.gene016667:CDS |
AAGGACGCAGTACATGCAAT+GGG | 0.553007 | 8.2:-62082233 | MS.gene016667:CDS |
GTTGGTTATAACAGGGGAAG+CGG | 0.555354 | 8.2:-62078941 | MS.gene016667:intron |
CTTAGCTACAGTTCGCTGAA+CGG | 0.556515 | 8.2:+62072158 | None:intergenic |
GTCAACCTCTAGGGCAGTCA+CGG | 0.557478 | 8.2:+62080930 | None:intergenic |
CTATTTGTTCTAGAATGCAA+TGG | 0.557854 | 8.2:-62080276 | MS.gene016667:intron |
TTGTGTTTGATAATTCTGAA+AGG | 0.558341 | 8.2:-62083914 | MS.gene016667:CDS |
GAATCTCTTCCTTACAAAGA+GGG | 0.559901 | 8.2:-62081231 | MS.gene016667:CDS |
ATTTCCTCATAATGCAAGGA+AGG | 0.560036 | 8.2:-62082447 | MS.gene016667:CDS |
GTAGTTGACACAGAAAGTAC+TGG | 0.560699 | 8.2:-62080805 | MS.gene016667:CDS |
GAAGCAATCTGTAGAAGAGA+AGG | 0.561154 | 8.2:-62081707 | MS.gene016667:CDS |
AAGTAGGTTATCAGAGATTG+AGG | 0.562439 | 8.2:-62078858 | MS.gene016667:CDS |
ATCAAGGAAATCTGCCTCGA+AGG | 0.564683 | 8.2:-62084149 | MS.gene016667:CDS |
TGACCCTCTACCTGGGAGTG+TGG | 0.566185 | 8.2:+62072555 | None:intergenic |
AATTGATAGAGAAGCATGCA+TGG | 0.571327 | 8.2:-62076323 | MS.gene016667:CDS |
TTAGTGAGAGTAATCTTGAA+AGG | 0.571501 | 8.2:-62076688 | MS.gene016667:CDS |
GTGTTTGATAATTCTGAAAG+GGG | 0.572394 | 8.2:-62083912 | MS.gene016667:CDS |
CCAGGAGCGCGAATCTGAGA+GGG | 0.572906 | 8.2:-62081103 | MS.gene016667:intron |
GGGGAAGCGGTGATCTATTG+AGG | 0.574600 | 8.2:-62078928 | MS.gene016667:CDS |
CAAGAACTTTGATAGGTCAA+AGG | 0.576575 | 8.2:-62080998 | MS.gene016667:CDS |
AAAGGACGCAGTACATGCAA+TGG | 0.577163 | 8.2:-62082234 | MS.gene016667:CDS |
AACTGTCGATGCTGCAAAGG+AGG | 0.578197 | 8.2:-62080222 | MS.gene016667:intron |
TGATGCTAATTGATTCTCCA+AGG | 0.578693 | 8.2:+62076967 | None:intergenic |
GGAAAACAGCTACTACAGAA+TGG | 0.578999 | 8.2:-62080784 | MS.gene016667:CDS |
GGTGCAATGCAGATTGTGGT+TGG | 0.581648 | 8.2:-62082565 | MS.gene016667:intron |
AGAGATATTGTCTATGCTTG+AGG | 0.583453 | 8.2:-62082395 | MS.gene016667:CDS |
AGTTCTTCCCTTGCTTTACG+AGG | 0.583626 | 8.2:+62076237 | None:intergenic |
CAAAACTGTCGATGCTGCAA+AGG | 0.585293 | 8.2:-62080225 | MS.gene016667:CDS |
AGTAATGGCAATGTTTGAGA+AGG | 0.587695 | 8.2:-62076047 | MS.gene016667:CDS |
CAGTCGTTGTCTGAACTAAG+TGG | 0.589400 | 8.2:-62075289 | MS.gene016667:CDS |
GGGTTGTGTGCAAAAGTTGA+AGG | 0.590852 | 8.2:-62081082 | MS.gene016667:CDS |
AGCTTCAGGCTGAACAATCA+GGG | 0.591274 | 8.2:-62076209 | MS.gene016667:intron |
TGCAGATTGTGGTTGGAGGT+AGG | 0.592516 | 8.2:-62082558 | MS.gene016667:intron |
AGACAATGCTATTTCTGAGG+TGG | 0.592664 | 8.2:-62082134 | MS.gene016667:CDS |
TCTATGCTTGAGGAAGCTGC+GGG | 0.592726 | 8.2:-62082385 | MS.gene016667:CDS |
GAAAGACTGTTCTGTGAGGG+TGG | 0.593114 | 8.2:-62076349 | MS.gene016667:CDS |
CCACATTTCCTCATAATGCA+AGG | 0.593770 | 8.2:-62082451 | MS.gene016667:CDS |
TGTCACGTTGTCAACCTCTA+GGG | 0.594997 | 8.2:+62080921 | None:intergenic |
CAAGAGCTTGTGTATAAGCA+AGG | 0.595498 | 8.2:-62083969 | MS.gene016667:CDS |
AAGAGACGCTAAATGTTACC+TGG | 0.599939 | 8.2:-62075853 | MS.gene016667:CDS |
AACGACTGTGCGTGTTGCGT+AGG | 0.600612 | 8.2:+62084118 | None:intergenic |
GTGATGCAAAGATAGCAGTT+GGG | 0.602797 | 8.2:-62081419 | MS.gene016667:CDS |
CGGAGAAATGAAATCTCTGT+CGG | 0.603080 | 8.2:-62081993 | MS.gene016667:CDS |
ATTGTGGTGTCACTAAAGGA+AGG | 0.604863 | 8.2:-62072237 | MS.gene016667:CDS |
AAGGGTGAACAAGAAAGTAA+TGG | 0.605324 | 8.2:-62076062 | MS.gene016667:CDS |
CTAACACACGATGTACATCA+AGG | 0.605499 | 8.2:-62084165 | None:intergenic |
CAAAGACAATGCTATTTCTG+AGG | 0.606578 | 8.2:-62082137 | MS.gene016667:CDS |
GGAATCTCTTCCTTACAAAG+AGG | 0.608720 | 8.2:-62081232 | MS.gene016667:CDS |
ACGGGATGAAGCTACTTCTG+TGG | 0.609709 | 8.2:-62081307 | MS.gene016667:CDS |
TGAGCCACACACAAAACATA+GGG | 0.610273 | 8.2:-62072599 | MS.gene016667:CDS |
GGCAATGTTTGAGAAGGCAG+AGG | 0.611737 | 8.2:-62076041 | MS.gene016667:CDS |
TGGAATCACCAATTTGACAC+AGG | 0.612696 | 8.2:-62084009 | MS.gene016667:CDS |
GCTGAGAAGGAAGCAAGCAT+GGG | 0.612728 | 8.2:-62082016 | MS.gene016667:CDS |
GATAACCGAGATTGATGACA+TGG | 0.613087 | 8.2:-62082095 | MS.gene016667:CDS |
TACACTATTACCGGGCACAA+TGG | 0.613373 | 8.2:-62075389 | MS.gene016667:CDS |
TGATTTGAAAAGTAGAGTTG+AGG | 0.618215 | 8.2:-62081650 | MS.gene016667:CDS |
TCCACTTTATATCTTGGACG+AGG | 0.620158 | 8.2:-62075206 | MS.gene016667:intron |
CCAAGTGGTCTTCTGACTGG+GGG | 0.622001 | 8.2:-62079210 | MS.gene016667:CDS |
GCCAAGTGGTCTTCTGACTG+GGG | 0.622632 | 8.2:-62079211 | MS.gene016667:CDS |
GAGAAGGAAGCAAGCATGGG+CGG | 0.629277 | 8.2:-62082013 | MS.gene016667:CDS |
TCGTGATCCTCGTAAAGCAA+GGG | 0.630792 | 8.2:-62076244 | MS.gene016667:CDS |
GCAATGCAGATTGTGGTTGG+AGG | 0.632768 | 8.2:-62082562 | MS.gene016667:intron |
GTCCACCGTGACTGCCCTAG+AGG | 0.633660 | 8.2:-62080935 | MS.gene016667:intron |
TGAAATGGAAGCTTTGCAAG+AGG | 0.633748 | 8.2:-62081208 | MS.gene016667:intron |
ACTTTCCCAGAATCTTGTGA+AGG | 0.633794 | 8.2:-62081957 | MS.gene016667:CDS |
TGACAAGTCTAAGATCAAGA+AGG | 0.634890 | 8.2:-62075903 | MS.gene016667:CDS |
TGAGCTCAAAGCTAGAAGGA+AGG | 0.637698 | 8.2:-62081280 | MS.gene016667:CDS |
GACATGATAATGAAAAGGAG+AGG | 0.639021 | 8.2:-62077030 | MS.gene016667:CDS |
AAGGAAGAGGATGGAAAACG+AGG | 0.639227 | 8.2:-62076669 | MS.gene016667:intron |
AGCATAGACAATATCTCTGG+GGG | 0.640180 | 8.2:+62082400 | None:intergenic |
ATAATAAAGAAGACACTCTG+AGG | 0.645280 | 8.2:-62081919 | MS.gene016667:CDS |
ATTGAGGCAACTTCATGCTG+TGG | 0.645512 | 8.2:-62078912 | MS.gene016667:CDS |
TCCAGGAGCGCGAATCTGAG+AGG | 0.646494 | 8.2:-62081104 | MS.gene016667:intron |
TCCTTCAAGAGTGACACTTG+TGG | 0.650744 | 8.2:+62079245 | None:intergenic |
TTTGATAGGTCAAAGGTGAA+GGG | 0.652433 | 8.2:-62080991 | MS.gene016667:CDS |
AAATGCTTAGAGGATCAACT+AGG | 0.656000 | 8.2:-62081441 | MS.gene016667:CDS |
AGGTGTAGGTTGCTGCTGCG+AGG | 0.659032 | 8.2:-62076823 | MS.gene016667:intron |
CAGTGTGATAAGGAAATCAG+TGG | 0.661322 | 8.2:-62076746 | MS.gene016667:CDS |
AGAAAGCTGAATCCTTCTGG+AGG | 0.662853 | 8.2:+62075355 | None:intergenic |
GGAGATATATTTCAGCCAAG+TGG | 0.666765 | 8.2:-62079225 | MS.gene016667:CDS |
CATGGCTAAGACAACTATGG+TGG | 0.672953 | 8.2:-62082077 | MS.gene016667:CDS |
TGGCAAGAGCAGCGGCAACG+AGG | 0.673318 | 8.2:-62081466 | MS.gene016667:CDS |
GCCAAGTTAGAACCTCCAGA+AGG | 0.687058 | 8.2:-62075367 | MS.gene016667:CDS |
CAGGAGCGCGAATCTGAGAG+GGG | 0.689108 | 8.2:-62081102 | MS.gene016667:CDS |
AGGAGCGAAGAAGTCAACAA+AGG | 0.689164 | 8.2:-62081899 | MS.gene016667:CDS |
AACCTCTAGGGCAGTCACGG+TGG | 0.694961 | 8.2:+62080933 | None:intergenic |
AAGCATAGACAATATCTCTG+GGG | 0.695585 | 8.2:+62082399 | None:intergenic |
ACAGAAAGACTGTTCTGTGA+GGG | 0.698306 | 8.2:-62076352 | MS.gene016667:CDS |
GAATGAGCTTCATACCCAAG+CGG | 0.705039 | 8.2:+62083882 | None:intergenic |
TCGTTGTCTGAACTAAGTGG+AGG | 0.710656 | 8.2:-62075286 | MS.gene016667:CDS |
GGAGCTCTCAAAGAGCCTGG+AGG | 0.714621 | 8.2:-62081629 | MS.gene016667:CDS |
AACAGAAAGACTGTTCTGTG+AGG | 0.738563 | 8.2:-62076353 | MS.gene016667:CDS |
CTATGCTTGAGGAAGCTGCG+GGG | 0.741808 | 8.2:-62082384 | MS.gene016667:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 62072146 | 62084177 | 62072146 | ID=MS.gene016667 |
chr8.2 | mRNA | 62072146 | 62084177 | 62072146 | ID=MS.gene016667.t1;Parent=MS.gene016667 |
chr8.2 | exon | 62083860 | 62084177 | 62083860 | ID=MS.gene016667.t1.exon1;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62083860 | 62084177 | 62083860 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62081895 | 62082575 | 62081895 | ID=MS.gene016667.t1.exon2;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62081895 | 62082575 | 62081895 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62081609 | 62081752 | 62081609 | ID=MS.gene016667.t1.exon3;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62081609 | 62081752 | 62081609 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62081209 | 62081499 | 62081209 | ID=MS.gene016667.t1.exon4;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62081209 | 62081499 | 62081209 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62080936 | 62081121 | 62080936 | ID=MS.gene016667.t1.exon5;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62080936 | 62081121 | 62080936 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62080693 | 62080857 | 62080693 | ID=MS.gene016667.t1.exon6;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62080693 | 62080857 | 62080693 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62080534 | 62080593 | 62080534 | ID=MS.gene016667.t1.exon7;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62080534 | 62080593 | 62080534 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62080223 | 62080285 | 62080223 | ID=MS.gene016667.t1.exon8;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62080223 | 62080285 | 62080223 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62079201 | 62079292 | 62079201 | ID=MS.gene016667.t1.exon9;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62079201 | 62079292 | 62079201 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62078853 | 62078949 | 62078853 | ID=MS.gene016667.t1.exon10;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62078853 | 62078949 | 62078853 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62078361 | 62078477 | 62078361 | ID=MS.gene016667.t1.exon11;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62078361 | 62078477 | 62078361 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62078025 | 62078243 | 62078025 | ID=MS.gene016667.t1.exon12;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62078025 | 62078243 | 62078025 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62076913 | 62077053 | 62076913 | ID=MS.gene016667.t1.exon13;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62076913 | 62077053 | 62076913 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62076670 | 62076837 | 62076670 | ID=MS.gene016667.t1.exon14;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62076670 | 62076837 | 62076670 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62076210 | 62076394 | 62076210 | ID=MS.gene016667.t1.exon15;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62076210 | 62076394 | 62076210 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62076000 | 62076093 | 62076000 | ID=MS.gene016667.t1.exon16;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62076000 | 62076093 | 62076000 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62075839 | 62075927 | 62075839 | ID=MS.gene016667.t1.exon17;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62075839 | 62075927 | 62075839 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62075207 | 62075432 | 62075207 | ID=MS.gene016667.t1.exon18;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62075207 | 62075432 | 62075207 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62072566 | 62072640 | 62072566 | ID=MS.gene016667.t1.exon19;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62072566 | 62072640 | 62072566 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
chr8.2 | exon | 62072146 | 62072262 | 62072146 | ID=MS.gene016667.t1.exon20;Parent=MS.gene016667.t1 |
chr8.2 | CDS | 62072146 | 62072262 | 62072146 | ID=cds.MS.gene016667.t1;Parent=MS.gene016667.t1 |
Gene Sequence |
Protein sequence |