Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45748.t1 | XP_013445069.1 | 94.6 | 1175 | 63 | 0 | 1 | 1175 | 1 | 1175 | 0.00E+00 | 1553.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45748.t1 | Q9SN90 | 78.3 | 1174 | 252 | 1 | 1 | 1174 | 1 | 1171 | 0.0e+00 | 1244.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45748.t1 | A0A072TZX1 | 94.6 | 1175 | 63 | 0 | 1 | 1175 | 1 | 1175 | 0.0e+00 | 1553.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45748.t1 | MTR_8g037325 | 97.702 | 1175 | 27 | 0 | 1 | 1175 | 1 | 1175 | 0.0 | 2333 |
| MS.gene45748.t1 | MTR_1g051825 | 24.649 | 1282 | 751 | 45 | 1 | 1166 | 25 | 1207 | 2.42e-68 | 252 |
| MS.gene45748.t1 | MTR_1g051825 | 24.649 | 1282 | 751 | 45 | 1 | 1166 | 1 | 1183 | 3.49e-68 | 251 |
| MS.gene45748.t1 | MTR_8g072890 | 25.000 | 1268 | 762 | 50 | 1 | 1154 | 14 | 1206 | 1.65e-49 | 192 |
| MS.gene45748.t1 | MTR_0003s0460 | 22.853 | 1269 | 771 | 44 | 3 | 1154 | 6 | 1183 | 3.35e-36 | 149 |
| MS.gene45748.t1 | MTR_7g091420 | 25.768 | 423 | 239 | 14 | 1 | 400 | 9 | 379 | 1.20e-19 | 93.2 |
| MS.gene45748.t1 | MTR_7g091430 | 26.792 | 265 | 169 | 6 | 903 | 1154 | 572 | 824 | 3.70e-16 | 84.3 |
| MS.gene45748.t1 | MTR_1g069910 | 21.995 | 732 | 415 | 28 | 520 | 1154 | 519 | 1191 | 2.54e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45748.t1 | AT5G62410 | 77.106 | 1175 | 269 | 0 | 1 | 1175 | 1 | 1175 | 0.0 | 1798 |
| MS.gene45748.t1 | AT3G47460 | 75.639 | 1174 | 286 | 0 | 1 | 1174 | 1 | 1174 | 0.0 | 1792 |
| MS.gene45748.t1 | AT3G47460 | 75.468 | 1174 | 285 | 1 | 1 | 1174 | 1 | 1171 | 0.0 | 1783 |
| MS.gene45748.t1 | AT2G27170 | 24.882 | 1274 | 759 | 42 | 1 | 1166 | 1 | 1184 | 3.41e-62 | 233 |
| MS.gene45748.t1 | AT2G27170 | 24.882 | 1274 | 759 | 42 | 1 | 1166 | 1 | 1184 | 3.41e-62 | 233 |
| MS.gene45748.t1 | AT2G27170 | 24.493 | 1135 | 686 | 38 | 1 | 1054 | 1 | 1045 | 2.54e-47 | 185 |
| MS.gene45748.t1 | AT2G27170 | 24.493 | 1135 | 686 | 38 | 1 | 1054 | 1 | 1045 | 2.54e-47 | 185 |
| MS.gene45748.t1 | AT5G48600 | 23.674 | 1263 | 782 | 46 | 1 | 1154 | 24 | 1213 | 1.73e-41 | 167 |
| MS.gene45748.t1 | AT5G48600 | 23.776 | 1266 | 780 | 46 | 1 | 1154 | 24 | 1216 | 2.17e-41 | 166 |
| MS.gene45748.t1 | AT3G54670 | 23.548 | 1291 | 740 | 47 | 3 | 1154 | 11 | 1193 | 2.21e-39 | 160 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCACTTTCTCTGATTC+TGG | 0.169360 | 8.3:-58998294 | MS.gene45748:CDS |
| GATTCCATTTGCTTCGTTCT+TGG | 0.197936 | 8.3:-59006865 | MS.gene45748:CDS |
| AGGAACAAGTATTTGATAAA+TGG | 0.209184 | 8.3:-59005368 | MS.gene45748:CDS |
| CTTCTCGCAATGGCTAATTT+TGG | 0.232238 | 8.3:+59004193 | None:intergenic |
| AGCAGTCAACTGAGCTATTT+TGG | 0.235151 | 8.3:+59004866 | None:intergenic |
| ACGTTTCCTTCACAAGATTC+TGG | 0.239221 | 8.3:+59004781 | None:intergenic |
| GGAAAACAGCTACTACAAAA+TGG | 0.240659 | 8.3:-59003602 | MS.gene45748:CDS |
| TGCCGAAATTGCACTTTCTT+TGG | 0.256016 | 8.3:-59003375 | MS.gene45748:CDS |
| TCAAGAAAGCTGAATCCTTC+TGG | 0.316791 | 8.3:+58998395 | None:intergenic |
| TTTCCATCCTCTTCCTTTCA+AGG | 0.319924 | 8.3:+58999710 | None:intergenic |
| CTTTGACCTATCAAAGTTCT+TGG | 0.320800 | 8.3:+59003817 | None:intergenic |
| GCAACACGCACCGTTGTTCC+TGG | 0.323171 | 8.3:-59006949 | MS.gene45748:CDS |
| AATCGAGAAAGTAGGCTAAA+AGG | 0.327465 | 8.3:-59000901 | MS.gene45748:CDS |
| AACCAAAGAAAGTGCAATTT+CGG | 0.330095 | 8.3:+59003373 | None:intergenic |
| CGGTAACAGTGTAGAAAATA+TGG | 0.330504 | 8.3:+58998442 | None:intergenic |
| TTCCAGCTTTGGAGAAGTTA+AGG | 0.343317 | 8.3:-59005091 | MS.gene45748:CDS |
| GTCATCAATCTCAGTTATCT+TGG | 0.345282 | 8.3:+59004929 | None:intergenic |
| GAAGGCCTCTGCCATTAAAA+AGG | 0.348915 | 8.3:-59004517 | MS.gene45748:CDS |
| CACAATTGAAACAGTAGCTT+TGG | 0.355453 | 8.3:+59006768 | None:intergenic |
| CTTGAGGTTAAAGTTGCATT+TGG | 0.356297 | 8.3:-58998368 | MS.gene45748:CDS |
| CAGCCAAGTGGTCTTCTGAC+TGG | 0.360379 | 8.3:-59002030 | MS.gene45748:CDS |
| TATTGTTACTTTAGTGACTT+TGG | 0.375858 | 8.3:-58998467 | MS.gene45748:intron |
| GGAACAAGTATTTGATAAAT+GGG | 0.377570 | 8.3:-59005367 | MS.gene45748:CDS |
| ATACACAAGCTCTTGAAGAT+TGG | 0.378596 | 8.3:+59006813 | None:intergenic |
| CGTTTCCTTCACAAGATTCT+GGG | 0.383248 | 8.3:+59004782 | None:intergenic |
| TCAGGAGATACTTCCAGCTT+TGG | 0.383477 | 8.3:-59005102 | MS.gene45748:CDS |
| ATTACCGGTTTAAACGGTTC+TGG | 0.383578 | 8.3:-59006904 | MS.gene45748:CDS |
| GAAGGATTCAGCTTTCTTGA+TGG | 0.383695 | 8.3:-58998392 | MS.gene45748:CDS |
| ACCTGCTCCACTTTACATCT+TGG | 0.384395 | 8.3:-58998255 | MS.gene45748:CDS |
| AATGCAATGGAATACGTCTT+TGG | 0.389504 | 8.3:-59003077 | MS.gene45748:CDS |
| AGCCAAGTGGTCTTCTGACT+GGG | 0.390511 | 8.3:-59002029 | MS.gene45748:CDS |
| GGAGCATGAAAAGGAATATC+AGG | 0.392844 | 8.3:-59004436 | MS.gene45748:intron |
| TCCTTACAAAGAGGGTGAAA+TGG | 0.395557 | 8.3:-59004051 | MS.gene45748:CDS |
| CGTAATCAAGGCTTGAGAAA+AGG | 0.398186 | 8.3:-58999116 | MS.gene45748:intron |
| ACCACAAGTGTCACTCTTGA+AGG | 0.399661 | 8.3:-59002063 | MS.gene45748:CDS |
| TATCCAGGAGCAAGCTTCCT+TGG | 0.399878 | 8.3:-59000019 | MS.gene45748:CDS |
| AGAAAGTAGGCTAAAAGGTT+TGG | 0.400704 | 8.3:-59000896 | MS.gene45748:CDS |
| ACAACGAACCTGTGTCAAAT+TGG | 0.403796 | 8.3:+59006837 | None:intergenic |
| TTCCTTAACTTCTCCAAAGC+TGG | 0.407122 | 8.3:+59005089 | None:intergenic |
| TATGGTGGATGTTAAAGAAA+TGG | 0.409848 | 8.3:-59004892 | MS.gene45748:CDS |
| TCAACAAGCTGCTGTTAGAT+TGG | 0.411671 | 8.3:-59003510 | MS.gene45748:intron |
| TCCATTTCACCCTCTTTGTA+AGG | 0.412254 | 8.3:+59004050 | None:intergenic |
| GATGTTGAAAATATCAAAAC+AGG | 0.415509 | 8.3:-59004086 | MS.gene45748:CDS |
| AACGCAATTACCGGTTTAAA+CGG | 0.415856 | 8.3:-59006910 | MS.gene45748:CDS |
| GGAAGAACTCGAGAAGCTTC+AGG | 0.419712 | 8.3:-58999258 | MS.gene45748:CDS |
| CCAGGTAAAACGAATGGAAA+TGG | 0.423754 | 8.3:-58999411 | MS.gene45748:intron |
| TAATCCTCCCTTGCATTATG+AGG | 0.425595 | 8.3:+59005273 | None:intergenic |
| GAAGCTTCAGGCTGAACAAT+CGG | 0.428130 | 8.3:-58999246 | MS.gene45748:CDS |
| AAACAGTTGTTTGGTAAAAG+TGG | 0.429212 | 8.3:-58999323 | MS.gene45748:CDS |
| GATCAACAAGCTTCTTGATC+AGG | 0.430039 | 8.3:-59005120 | MS.gene45748:CDS |
| CTGAAACAATGAAAGATCAT+AGG | 0.433798 | 8.3:+59001206 | None:intergenic |
| TGAAATTACCGTTACTAGAC+AGG | 0.435488 | 8.3:-59006695 | MS.gene45748:intron |
| GGAGAGGCTTGTAATGGAAA+TGG | 0.436064 | 8.3:-59000049 | MS.gene45748:CDS |
| AAGTTGCATTTGGAAGTGTA+TGG | 0.438259 | 8.3:-58998358 | MS.gene45748:CDS |
| GAAAATGAAGCAGTGTGATA+AGG | 0.445351 | 8.3:-58999791 | MS.gene45748:CDS |
| TGTGTTTGATAATTCTGAAA+GGG | 0.445875 | 8.3:-59006749 | MS.gene45748:CDS |
| AAGCTTCAGGCTGAACAATC+GGG | 0.446104 | 8.3:-58999245 | MS.gene45748:CDS |
| GACCTATCAAAGTTCTTGGC+AGG | 0.447396 | 8.3:+59003821 | None:intergenic |
| AAAATCAGTTAAAGTCAAAA+CGG | 0.448567 | 8.3:-59004154 | MS.gene45748:CDS |
| AACTCTTGAGGGAACAGTAT+AGG | 0.451920 | 8.3:+59003532 | None:intergenic |
| TGATTTGAAAAGTAGATTTG+AGG | 0.457698 | 8.3:-59004478 | MS.gene45748:CDS |
| TCAAGCATAGACAATATCTC+TGG | 0.460101 | 8.3:+59005227 | None:intergenic |
| AATGAAATCTCTGTCGGATA+AGG | 0.460698 | 8.3:-59004817 | MS.gene45748:CDS |
| GTTTATTGTGGTGTCACTAA+AGG | 0.462324 | 8.3:-58996358 | MS.gene45748:CDS |
| CAGCTTTCTTGATGGTCTTG+AGG | 0.462965 | 8.3:-58998384 | MS.gene45748:CDS |
| GAAAACAGCTACTACAAAAT+GGG | 0.468364 | 8.3:-59003601 | MS.gene45748:CDS |
| GCAGCTTGTTGAACTCTTGA+GGG | 0.469446 | 8.3:+59003521 | None:intergenic |
| TGAAAATATCAAAACAGGAT+TGG | 0.469652 | 8.3:-59004081 | MS.gene45748:CDS |
| CAACGAGGAGAAATGCTTAG+AGG | 0.470079 | 8.3:-59004279 | MS.gene45748:CDS |
| GTAATCAAGGCTTGAGAAAA+GGG | 0.473702 | 8.3:-58999115 | MS.gene45748:intron |
| TTAGTTGTACGGAATGGAAA+AGG | 0.480194 | 8.3:+59005315 | None:intergenic |
| AAATCAGTTAAAGTCAAAAC+GGG | 0.481292 | 8.3:-59004153 | MS.gene45748:CDS |
| TCTCCAAGGAAGCTTGCTCC+TGG | 0.485034 | 8.3:+59000016 | None:intergenic |
| TTTGCCAGAACCGTTTAAAC+CGG | 0.485861 | 8.3:+59006900 | None:intergenic |
| GTCATCTTCAAAAGACCTAA+AGG | 0.486816 | 8.3:-59000839 | MS.gene45748:intron |
| AGAGTAACCTTGAAAGGAAG+AGG | 0.487004 | 8.3:-58999717 | MS.gene45748:CDS |
| ATTGTTCACATTTAGTTGTA+CGG | 0.488274 | 8.3:+59005304 | None:intergenic |
| TGCTGAGAAGGAAGCAAGCA+TGG | 0.488461 | 8.3:-59004847 | MS.gene45748:CDS |
| TCTAACTTGGCCATTGTGCC+CGG | 0.489559 | 8.3:+58998422 | None:intergenic |
| GATTCCAAGAACGAAGCAAA+TGG | 0.490395 | 8.3:+59006861 | None:intergenic |
| GAAATTGCACTTTCTTTGGT+TGG | 0.490717 | 8.3:-59003371 | MS.gene45748:CDS |
| TCCTTCTGGAGGTTCTAACT+TGG | 0.491158 | 8.3:+58998409 | None:intergenic |
| AACTCATCAAAGTGAAAGAT+AGG | 0.492152 | 8.3:-59003775 | MS.gene45748:CDS |
| TGGTTATCAAGAAGAATTGA+AGG | 0.495383 | 8.3:-59003351 | MS.gene45748:intron |
| TTTGTTCCAGGTAAAACGAA+TGG | 0.496337 | 8.3:-58999417 | MS.gene45748:intron |
| CTGATAGGTGGCATTTAGTC+GGG | 0.497381 | 8.3:-59002094 | MS.gene45748:intron |
| ACGCAATCTCTCAGCATACT+TGG | 0.498016 | 8.3:-59003870 | MS.gene45748:CDS |
| TGGAGAAGTTAAGGAAAGAA+AGG | 0.499569 | 8.3:-59005082 | MS.gene45748:CDS |
| TTACGTGTTCACTTTGGTCC+AGG | 0.500889 | 8.3:+58998869 | None:intergenic |
| TGAAAAGGAGAGGCTTGTAA+TGG | 0.501869 | 8.3:-59000055 | MS.gene45748:CDS |
| GTTATCAGAGATTGAGGCAA+AGG | 0.502725 | 8.3:-59001667 | MS.gene45748:intron |
| CTTTCAGTTCCTTCTCGCAA+TGG | 0.507756 | 8.3:+59004183 | None:intergenic |
| GAAAGGGGTCGCAGTCCGCT+TGG | 0.509046 | 8.3:-59006733 | MS.gene45748:CDS |
| ACCTCGTCCAAGATGTAAAG+TGG | 0.509623 | 8.3:+58998248 | None:intergenic |
| ATCCTGCCAAGAACTTTGAT+AGG | 0.510683 | 8.3:-59003823 | MS.gene45748:CDS |
| TGAAATGGAAGCTTTGCAAA+AGG | 0.511355 | 8.3:-59004036 | MS.gene45748:intron |
| GAACCTGGAGGAGCATGAAA+AGG | 0.518225 | 8.3:-59004445 | MS.gene45748:CDS |
| ATTGTAACGCTGAGTTAGAT+AGG | 0.518519 | 8.3:-59005037 | MS.gene45748:CDS |
| TCTTGAGAAGAAGCAGTGTA+AGG | 0.519269 | 8.3:-59005150 | MS.gene45748:CDS |
| GGTGATGCAAAGATAGCAGT+TGG | 0.519540 | 8.3:-59004248 | MS.gene45748:CDS |
| TCCAAGATGTAAAGTGGAGC+AGG | 0.519656 | 8.3:+58998254 | None:intergenic |
| AGCAGCTTGTTGAACTCTTG+AGG | 0.520161 | 8.3:+59003520 | None:intergenic |
| AATTTCATTGCAGGTGGGCA+AGG | 0.521336 | 8.3:-59003402 | MS.gene45748:intron |
| TCACATTTAGTTGTACGGAA+TGG | 0.529589 | 8.3:+59005309 | None:intergenic |
| GGAAATGGAAGCTGTTATCC+AGG | 0.529804 | 8.3:-59000034 | MS.gene45748:CDS |
| AATGCAAGGGAGGATTACTA+AGG | 0.531218 | 8.3:-59005267 | MS.gene45748:CDS |
| ATAAACTTACGTGTTCACTT+TGG | 0.531279 | 8.3:+58998863 | None:intergenic |
| AGCTCAGTTGACTGCTGAGA+AGG | 0.531731 | 8.3:-59004859 | MS.gene45748:CDS |
| AACAGTTGTTTGGTAAAAGT+GGG | 0.531898 | 8.3:-58999322 | MS.gene45748:CDS |
| TTAGGGACATGATAATGAAA+AGG | 0.532136 | 8.3:-59000070 | MS.gene45748:intron |
| AAAATGAGCTCAAAGCTAGA+AGG | 0.533492 | 8.3:-59004112 | MS.gene45748:CDS |
| TGAGCAAAACGAGCATCATA+AGG | 0.534411 | 8.3:-59001175 | MS.gene45748:intron |
| CTTTGATAGGTCAAAGGTGA+AGG | 0.534957 | 8.3:-59003810 | MS.gene45748:CDS |
| GAAGCAATCTATAGAAGAGA+AGG | 0.535482 | 8.3:-59004535 | MS.gene45748:CDS |
| GTTGGTTATTACAGGGGAAG+CGG | 0.535512 | 8.3:-59001756 | MS.gene45748:intron |
| CGTAGGATTTGAATCCTTCG+AGG | 0.535880 | 8.3:+59006971 | None:intergenic |
| CAAGCATAGACAATATCTCT+GGG | 0.536394 | 8.3:+59005228 | None:intergenic |
| TTGAGCCACACACAAAACAT+AGG | 0.541500 | 8.3:-58996717 | MS.gene45748:CDS |
| GTCTATGCTTGAGGAAGCTG+CGG | 0.541797 | 8.3:-59005216 | MS.gene45748:CDS |
| TGACATGGCTAAGACAACTA+TGG | 0.542943 | 8.3:-59004910 | MS.gene45748:CDS |
| GTGTATAAACAAGGTCAAGC+GGG | 0.543337 | 8.3:-59006796 | MS.gene45748:CDS |
| AAATCACTTTCCACACTCCC+AGG | 0.545421 | 8.3:-58996682 | MS.gene45748:intron |
| TCTGATAGGTGGCATTTAGT+CGG | 0.546853 | 8.3:-59002095 | MS.gene45748:intron |
| CAAAATTAGCCATTGCGAGA+AGG | 0.550598 | 8.3:-59004192 | MS.gene45748:CDS |
| ATGACAATAATCGAGAAAGT+AGG | 0.550766 | 8.3:-59000909 | MS.gene45748:CDS |
| TTCCGGACAAAATTTGTCGA+TGG | 0.551293 | 8.3:-58996306 | MS.gene45748:CDS |
| CTCGTGATCCTCGTAAAGCA+AGG | 0.552315 | 8.3:-58999280 | MS.gene45748:CDS |
| AAGGACGCAGTACATGCAAT+GGG | 0.553007 | 8.3:-59005063 | MS.gene45748:CDS |
| CCTTGCATTATGAGGAAATG+TGG | 0.554258 | 8.3:+59005281 | None:intergenic |
| GTCAACCTCTAGGGCAGTCA+CGG | 0.557478 | 8.3:+59003748 | None:intergenic |
| TTAGTGAGAGTAACCTTGAA+AGG | 0.557727 | 8.3:-58999723 | MS.gene45748:CDS |
| CTATTTGTTCTAGAATGCAA+TGG | 0.557854 | 8.3:-59003090 | MS.gene45748:intron |
| TTGTGTTTGATAATTCTGAA+AGG | 0.558341 | 8.3:-59006750 | MS.gene45748:CDS |
| CCAGGAGCGCGAATCTGAGA+GGG | 0.558584 | 8.3:-59003921 | MS.gene45748:intron |
| GAATCTCTTCCTTACAAAGA+GGG | 0.559901 | 8.3:-59004059 | MS.gene45748:CDS |
| GTAGTTGACACAGAAAGTAC+TGG | 0.560699 | 8.3:-59003623 | MS.gene45748:CDS |
| CCACATTTCCTCATAATGCA+AGG | 0.561004 | 8.3:-59005281 | MS.gene45748:CDS |
| AAGTAGGTTATCAGAGATTG+AGG | 0.562439 | 8.3:-59001673 | MS.gene45748:CDS |
| ATCAAGGAAATCTGCCTCGA+AGG | 0.564683 | 8.3:-59006985 | MS.gene45748:CDS |
| TAACCTTGAAAGGAAGAGGA+TGG | 0.565709 | 8.3:-58999713 | MS.gene45748:CDS |
| TGACCCTCTACCTGGGAGTG+TGG | 0.566185 | 8.3:+58996672 | None:intergenic |
| TGAGGAGCTCTCAAAGAACC+TGG | 0.567975 | 8.3:-59004460 | MS.gene45748:CDS |
| CAAGAGCTTGTGTATAAACA+AGG | 0.570748 | 8.3:-59006805 | MS.gene45748:CDS |
| AATTGATAGAGAAGCATGCA+TGG | 0.571327 | 8.3:-58999358 | MS.gene45748:CDS |
| GTGTTTGATAATTCTGAAAG+GGG | 0.572394 | 8.3:-59006748 | MS.gene45748:CDS |
| GGGGAAGCGGTGATCTATTG+AGG | 0.574600 | 8.3:-59001743 | MS.gene45748:CDS |
| AAAGGACGCAGTACATGCAA+TGG | 0.577163 | 8.3:-59005064 | MS.gene45748:CDS |
| AACTGTCGATGCTGCAAAGG+AGG | 0.578197 | 8.3:-59003036 | MS.gene45748:intron |
| TGATGCTAATTGATTCTCCA+AGG | 0.578693 | 8.3:+59000002 | None:intergenic |
| GGTGCAATGCAGATTGTGGT+TGG | 0.581648 | 8.3:-59005395 | MS.gene45748:intron |
| AGAGATATTGTCTATGCTTG+AGG | 0.583453 | 8.3:-59005225 | MS.gene45748:CDS |
| AGTTCTTCCCTTGCTTTACG+AGG | 0.583626 | 8.3:+58999272 | None:intergenic |
| CAAAACTGTCGATGCTGCAA+AGG | 0.585293 | 8.3:-59003039 | MS.gene45748:CDS |
| AGTAATGGCAATGTTTGAGA+AGG | 0.587695 | 8.3:-58999082 | MS.gene45748:CDS |
| GGGTTGTGTGCAAAAGTTGA+AGG | 0.590852 | 8.3:-59003900 | MS.gene45748:CDS |
| TGCAGATTGTGGTTGGAGGT+AGG | 0.592516 | 8.3:-59005388 | MS.gene45748:intron |
| AGACAATGCTATTTCTGAGG+TGG | 0.592664 | 8.3:-59004964 | MS.gene45748:CDS |
| TCTATGCTTGAGGAAGCTGC+GGG | 0.592726 | 8.3:-59005215 | MS.gene45748:CDS |
| GAAAGACTGTTCTGTGAGGG+TGG | 0.593114 | 8.3:-58999384 | MS.gene45748:CDS |
| CAAGAACTTTGATAGGTCAA+AGG | 0.593969 | 8.3:-59003816 | MS.gene45748:CDS |
| TGTCACGTTGTCAACCTCTA+GGG | 0.594997 | 8.3:+59003739 | None:intergenic |
| AACAACGGTGCGTGTTGCGT+AGG | 0.595679 | 8.3:+59006954 | None:intergenic |
| ACGGGATGAAGCTACGTCTG+TGG | 0.599890 | 8.3:-59004135 | MS.gene45748:CDS |
| AAGAGACGCTAAATGTTACC+TGG | 0.599939 | 8.3:-58998887 | MS.gene45748:CDS |
| GTGATGCAAAGATAGCAGTT+GGG | 0.602797 | 8.3:-59004247 | MS.gene45748:CDS |
| CGGAGAAATGAAATCTCTGT+CGG | 0.603080 | 8.3:-59004823 | MS.gene45748:CDS |
| CACATTTCCTCATAATGCAA+GGG | 0.604066 | 8.3:-59005280 | MS.gene45748:CDS |
| ATTGTGGTGTCACTAAAGGA+AGG | 0.604863 | 8.3:-58996354 | MS.gene45748:CDS |
| AAGGGTGAACAAGAAAGTAA+TGG | 0.605324 | 8.3:-58999097 | MS.gene45748:CDS |
| CTAACACACGATGTACATCA+AGG | 0.605499 | 8.3:-59007001 | None:intergenic |
| CAAAGACAATGCTATTTCTG+AGG | 0.606578 | 8.3:-59004967 | MS.gene45748:CDS |
| GGAATCTCTTCCTTACAAAG+AGG | 0.608720 | 8.3:-59004060 | MS.gene45748:CDS |
| TGAGCCACACACAAAACATA+GGG | 0.610273 | 8.3:-58996716 | MS.gene45748:CDS |
| GGCAATGTTTGAGAAGGCAG+AGG | 0.611737 | 8.3:-58999076 | MS.gene45748:CDS |
| TGGAATCACCAATTTGACAC+AGG | 0.612696 | 8.3:-59006845 | MS.gene45748:CDS |
| GCTGAGAAGGAAGCAAGCAT+GGG | 0.612728 | 8.3:-59004846 | MS.gene45748:CDS |
| AAAAGTTACCTGTCTAGTAA+CGG | 0.614719 | 8.3:+59006687 | None:intergenic |
| GATAACTGAGATTGATGACA+TGG | 0.621203 | 8.3:-59004925 | MS.gene45748:CDS |
| TACACTGTTACCGGGCACAA+TGG | 0.621236 | 8.3:-58998432 | MS.gene45748:CDS |
| CCAAGTGGTCTTCTGACTGG+GGG | 0.622001 | 8.3:-59002027 | MS.gene45748:CDS |
| GCCAAGTGGTCTTCTGACTG+GGG | 0.622632 | 8.3:-59002028 | MS.gene45748:CDS |
| GAGAAGGAAGCAAGCATGGG+CGG | 0.629277 | 8.3:-59004843 | MS.gene45748:CDS |
| TCGTGATCCTCGTAAAGCAA+GGG | 0.630792 | 8.3:-58999279 | MS.gene45748:CDS |
| GCAATGCAGATTGTGGTTGG+AGG | 0.632768 | 8.3:-59005392 | MS.gene45748:intron |
| GTCCACCGTGACTGCCCTAG+AGG | 0.633660 | 8.3:-59003753 | MS.gene45748:intron |
| ACTTTCCCAGAATCTTGTGA+AGG | 0.633794 | 8.3:-59004787 | MS.gene45748:CDS |
| ATTTCCTCATAATGCAAGGG+AGG | 0.634352 | 8.3:-59005277 | MS.gene45748:CDS |
| TGACAAGTCTAAGATCAAGA+AGG | 0.634890 | 8.3:-58998937 | MS.gene45748:CDS |
| TGTGTATAAACAAGGTCAAG+CGG | 0.636731 | 8.3:-59006797 | MS.gene45748:CDS |
| TGAGCTCAAAGCTAGAAGGA+AGG | 0.637698 | 8.3:-59004108 | MS.gene45748:CDS |
| GACATGATAATGAAAAGGAG+AGG | 0.639021 | 8.3:-59000065 | MS.gene45748:CDS |
| AAGGAAGAGGATGGAAAACG+AGG | 0.639227 | 8.3:-58999704 | MS.gene45748:intron |
| AGCATAGACAATATCTCTGG+GGG | 0.640180 | 8.3:+59005230 | None:intergenic |
| TCCACTTTACATCTTGGACG+AGG | 0.641213 | 8.3:-58998249 | MS.gene45748:intron |
| AGCTTCAGGCTGAACAATCG+GGG | 0.643790 | 8.3:-58999244 | MS.gene45748:intron |
| TCCAGGAGCGCGAATCTGAG+AGG | 0.643876 | 8.3:-59003922 | MS.gene45748:intron |
| ATAATAAAGAAGACACTCTG+AGG | 0.645280 | 8.3:-59004749 | MS.gene45748:CDS |
| ATTGAGGCAACTTCATGCTG+TGG | 0.645512 | 8.3:-59001727 | MS.gene45748:CDS |
| TCCTTCAAGAGTGACACTTG+TGG | 0.650744 | 8.3:+59002062 | None:intergenic |
| TGGCAAGAGCAGCGGCAACG+AGG | 0.651083 | 8.3:-59004294 | MS.gene45748:CDS |
| TTTGATAGGTCAAAGGTGAA+GGG | 0.652433 | 8.3:-59003809 | MS.gene45748:CDS |
| ACGAGAAGAGAAATCATAGT+CGG | 0.656767 | 8.3:+58999298 | None:intergenic |
| CAGTGTGATAAGGAAATCAG+TGG | 0.661322 | 8.3:-58999781 | MS.gene45748:CDS |
| AGAAAGCTGAATCCTTCTGG+AGG | 0.662853 | 8.3:+58998398 | None:intergenic |
| GGAGATATATTTCAGCCAAG+TGG | 0.666765 | 8.3:-59002042 | MS.gene45748:CDS |
| AAATGCTTAGAGGATCAACT+AGG | 0.671879 | 8.3:-59004269 | MS.gene45748:CDS |
| CATGGCTAAGACAACTATGG+TGG | 0.672953 | 8.3:-59004907 | MS.gene45748:CDS |
| CAGTCGTTGTCTGAACTGAG+TGG | 0.675822 | 8.3:-58998332 | MS.gene45748:CDS |
| GCCAAGTTAGAACCTCCAGA+AGG | 0.687058 | 8.3:-58998410 | MS.gene45748:CDS |
| CAGGAGCGCGAATCTGAGAG+GGG | 0.689108 | 8.3:-59003920 | MS.gene45748:CDS |
| AGGAGCGAAGAAGTCAACAA+AGG | 0.689164 | 8.3:-59004729 | MS.gene45748:CDS |
| AGGTGTAGGTTACTGCTGCG+AGG | 0.692776 | 8.3:-58999858 | MS.gene45748:intron |
| TCGTTGTCTGAACTGAGTGG+AGG | 0.693325 | 8.3:-58998329 | MS.gene45748:CDS |
| AACCTCTAGGGCAGTCACGG+TGG | 0.694961 | 8.3:+59003751 | None:intergenic |
| AAGCATAGACAATATCTCTG+GGG | 0.695585 | 8.3:+59005229 | None:intergenic |
| ACAGAAAGACTGTTCTGTGA+GGG | 0.698306 | 8.3:-58999387 | MS.gene45748:CDS |
| GAATGAGCTTCATATCCAAG+CGG | 0.703712 | 8.3:+59006718 | None:intergenic |
| TCGGTCGAATCCAGGAACAA+CGG | 0.713375 | 8.3:+59006939 | None:intergenic |
| GGAGCTCTCAAAGAACCTGG+AGG | 0.733098 | 8.3:-59004457 | MS.gene45748:CDS |
| AACAGAAAGACTGTTCTGTG+AGG | 0.738563 | 8.3:-58999388 | MS.gene45748:CDS |
| CTATGCTTGAGGAAGCTGCG+GGG | 0.741808 | 8.3:-59005214 | MS.gene45748:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58996263 | 59007013 | 58996263 | ID=MS.gene45748 |
| chr8.3 | mRNA | 58996263 | 59007013 | 58996263 | ID=MS.gene45748.t1;Parent=MS.gene45748 |
| chr8.3 | exon | 59006696 | 59007013 | 59006696 | ID=MS.gene45748.t1.exon1;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59006696 | 59007013 | 59006696 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59004725 | 59005405 | 59004725 | ID=MS.gene45748.t1.exon2;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59004725 | 59005405 | 59004725 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59004437 | 59004580 | 59004437 | ID=MS.gene45748.t1.exon3;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59004437 | 59004580 | 59004437 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59004037 | 59004327 | 59004037 | ID=MS.gene45748.t1.exon4;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59004037 | 59004327 | 59004037 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59003754 | 59003939 | 59003754 | ID=MS.gene45748.t1.exon5;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59003754 | 59003939 | 59003754 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59003511 | 59003675 | 59003511 | ID=MS.gene45748.t1.exon6;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59003511 | 59003675 | 59003511 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59003352 | 59003411 | 59003352 | ID=MS.gene45748.t1.exon7;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59003352 | 59003411 | 59003352 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59003037 | 59003099 | 59003037 | ID=MS.gene45748.t1.exon8;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59003037 | 59003099 | 59003037 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59002018 | 59002109 | 59002018 | ID=MS.gene45748.t1.exon9;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59002018 | 59002109 | 59002018 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59001668 | 59001764 | 59001668 | ID=MS.gene45748.t1.exon10;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59001668 | 59001764 | 59001668 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59001176 | 59001292 | 59001176 | ID=MS.gene45748.t1.exon11;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59001176 | 59001292 | 59001176 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 59000840 | 59001058 | 59000840 | ID=MS.gene45748.t1.exon12;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 59000840 | 59001058 | 59000840 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58999948 | 59000088 | 58999948 | ID=MS.gene45748.t1.exon13;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58999948 | 59000088 | 58999948 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58999705 | 58999872 | 58999705 | ID=MS.gene45748.t1.exon14;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58999705 | 58999872 | 58999705 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58999245 | 58999429 | 58999245 | ID=MS.gene45748.t1.exon15;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58999245 | 58999429 | 58999245 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58999035 | 58999128 | 58999035 | ID=MS.gene45748.t1.exon16;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58999035 | 58999128 | 58999035 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58998873 | 58998961 | 58998873 | ID=MS.gene45748.t1.exon17;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58998873 | 58998961 | 58998873 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58998250 | 58998475 | 58998250 | ID=MS.gene45748.t1.exon18;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58998250 | 58998475 | 58998250 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58996683 | 58996757 | 58996683 | ID=MS.gene45748.t1.exon19;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58996683 | 58996757 | 58996683 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| chr8.3 | exon | 58996263 | 58996379 | 58996263 | ID=MS.gene45748.t1.exon20;Parent=MS.gene45748.t1 |
| chr8.3 | CDS | 58996263 | 58996379 | 58996263 | ID=cds.MS.gene45748.t1;Parent=MS.gene45748.t1 |
| Gene Sequence |
| Protein sequence |
