AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01024.t1 MTR_2g023880 98.958 192 2 0 1 192 31 222 1.90e-136 380
MS.gene01024.t1 MTR_4g049540 60.733 191 74 1 1 191 31 220 3.76e-82 243
MS.gene01024.t1 MTR_2g088060 49.738 191 95 1 1 191 31 220 9.17e-55 173
MS.gene01024.t1 MTR_7g056133 43.094 181 95 2 2 175 33 212 6.66e-41 138
MS.gene01024.t1 MTR_5g093360 55.882 68 29 1 2 69 32 98 4.05e-22 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01024.t1 AT5G42570 62.011 179 67 1 1 179 31 208 1.21e-77 231
MS.gene01024.t1 AT1G11905 60.000 180 71 1 1 180 31 209 1.52e-72 219
MS.gene01024.t1 AT1G11905 55.556 180 78 2 1 180 31 208 9.55e-61 189
MS.gene01024.t1 AT5G48660 39.560 182 102 2 2 176 33 213 1.56e-34 122
MS.gene01024.t1 AT3G07190 39.011 182 103 2 2 176 33 213 4.93e-33 118
MS.gene01024.t1 AT3G20450 52.475 101 47 1 3 102 37 137 2.57e-28 103
MS.gene01024.t1 AT5G48660 37.226 137 79 1 47 176 1 137 9.83e-20 81.6

Find 43 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.4:-63564078 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.4:+63561711 MS.gene01024:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.4:-63564022 None:intergenic
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.4:-63563719 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.4:+63563816 MS.gene01024:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.4:+63561555 None:intergenic
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.4:-63563770 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.4:+63563949 MS.gene01024:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.4:+63561702 MS.gene01024:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2.4:+63563742 MS.gene01024:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2.4:+63563757 MS.gene01024:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.4:+63561588 MS.gene01024:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.4:-63564037 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.4:+63563884 MS.gene01024:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.4:-63564031 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.4:+63561604 MS.gene01024:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.4:+63563842 MS.gene01024:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.4:+63561577 MS.gene01024:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.4:+63563914 MS.gene01024:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.4:+63563995 MS.gene01024:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.4:+63561560 None:intergenic
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.4:+63563794 MS.gene01024:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2.4:+63561741 MS.gene01024:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2.4:+63563743 MS.gene01024:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2.4:+63561742 MS.gene01024:CDS
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.4:-63564028 None:intergenic
CAACAACGTGGGATCGAACA+TGG 0.569692 2.4:+63561676 MS.gene01024:CDS
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.4:+63563963 MS.gene01024:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2.4:+63563751 MS.gene01024:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.4:-63561712 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.4:+63563964 MS.gene01024:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.4:+63563918 MS.gene01024:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.4:+63563770 MS.gene01024:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.4:+63561571 MS.gene01024:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.4:-63563952 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.4:-63561716 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.4:-63561617 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.4:+63563796 MS.gene01024:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.4:+63561665 MS.gene01024:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.4:+63563795 MS.gene01024:CDS
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.4:+63563793 MS.gene01024:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.4:+63563797 MS.gene01024:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.4:+63561664 MS.gene01024:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG - chr2.4:63562680-63562699 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG - chr2.4:63562681-63562700 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG - chr2.4:63563639-63563658 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG + chr2.4:63562761-63562780 MS.gene01024:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG + chr2.4:63561846-63561865 MS.gene01024:intron 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG + chr2.4:63562629-63562648 MS.gene01024:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG + chr2.4:63561945-63561964 MS.gene01024:intron 15.0%
!! AATCATAAGATATATGCATA+TGG - chr2.4:63562999-63563018 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG + chr2.4:63563333-63563352 MS.gene01024:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG - chr2.4:63563227-63563246 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG + chr2.4:63561852-63561871 MS.gene01024:intron 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG + chr2.4:63562736-63562755 MS.gene01024:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG + chr2.4:63561760-63561779 MS.gene01024:intron 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG + chr2.4:63561989-63562008 MS.gene01024:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG + chr2.4:63563388-63563407 MS.gene01024:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG - chr2.4:63562609-63562628 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG + chr2.4:63563525-63563544 MS.gene01024:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG + chr2.4:63561761-63561780 MS.gene01024:intron 20.0%
! AAGTTTAACAACATACTAGA+TGG - chr2.4:63563437-63563456 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG - chr2.4:63562262-63562281 None:intergenic 25.0%
! AGATTGACTACATTAATGAA+AGG - chr2.4:63562268-63562287 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG - chr2.4:63562261-63562280 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG + chr2.4:63563651-63563670 MS.gene01024:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG + chr2.4:63563842-63563861 MS.gene01024:CDS 25.0%
! TTTGGAAATATGTTGAACTT+AGG - chr2.4:63563484-63563503 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG - chr2.4:63562945-63562964 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG + chr2.4:63561821-63561840 MS.gene01024:intron 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG - chr2.4:63563502-63563521 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG + chr2.4:63562707-63562726 MS.gene01024:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG + chr2.4:63563793-63563812 MS.gene01024:CDS 30.0%
AAGTTGAAAAATGTGAGCTT+TGG + chr2.4:63563287-63563306 MS.gene01024:intron 30.0%
ACAATGATTCAGCATTCATA+AGG + chr2.4:63562956-63562975 MS.gene01024:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG + chr2.4:63563914-63563933 MS.gene01024:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG - chr2.4:63562194-63562213 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG + chr2.4:63563690-63563709 MS.gene01024:intron 30.0%
CAGTATTGTTTATGTTGGAT+TGG - chr2.4:63563594-63563613 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG - chr2.4:63563722-63563741 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG - chr2.4:63563599-63563618 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG - chr2.4:63563177-63563196 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG + chr2.4:63563336-63563355 MS.gene01024:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG + chr2.4:63561993-63562012 MS.gene01024:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG + chr2.4:63563168-63563187 MS.gene01024:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG + chr2.4:63563555-63563574 MS.gene01024:intron 30.0%
TTGTTTGCCTAATTCTTTGT+TGG + chr2.4:63563167-63563186 MS.gene01024:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG + chr2.4:63563236-63563255 MS.gene01024:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG + chr2.4:63562176-63562195 MS.gene01024:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG + chr2.4:63562110-63562129 MS.gene01024:intron 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG - chr2.4:63563547-63563566 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG - chr2.4:63562936-63562955 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG + chr2.4:63563217-63563236 MS.gene01024:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG - chr2.4:63562402-63562421 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG + chr2.4:63563742-63563761 MS.gene01024:CDS 35.0%
ACTCCGAAAGATCAGAAAAT+GGG - chr2.4:63562232-63562251 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG + chr2.4:63563794-63563813 MS.gene01024:CDS 35.0%
ATCATTACATAAGGGAACTC+CGG + chr2.4:63563751-63563770 MS.gene01024:CDS 35.0%
ATGATGAAGATTCAACAACG+TGG + chr2.4:63561664-63561683 MS.gene01024:CDS 35.0%
CAGACTGCATCATTACATAA+GGG + chr2.4:63563743-63563762 MS.gene01024:CDS 35.0%
CAGTCAAAAGATAAAGAGGT+AGG + chr2.4:63563918-63563937 MS.gene01024:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG - chr2.4:63562822-63562841 None:intergenic 35.0%
GAGAATGTTCTACTTTCTTG+TGG + chr2.4:63563309-63563328 MS.gene01024:intron 35.0%
TGAATATGATCGCTTACTTG+AGG + chr2.4:63563995-63564014 MS.gene01024:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG + chr2.4:63561665-63561684 MS.gene01024:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG + chr2.4:63562963-63562982 MS.gene01024:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG + chr2.4:63563675-63563694 MS.gene01024:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG + chr2.4:63563964-63563983 MS.gene01024:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG + chr2.4:63562226-63562245 MS.gene01024:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG - chr2.4:63562040-63562059 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG + chr2.4:63563069-63563088 MS.gene01024:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG + chr2.4:63563068-63563087 MS.gene01024:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG - chr2.4:63561620-63561639 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG - chr2.4:63562908-63562927 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG - chr2.4:63563083-63563102 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG - chr2.4:63563161-63563180 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG - chr2.4:63563086-63563105 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG + chr2.4:63563796-63563815 MS.gene01024:CDS 40.0%
CTTAGCCATAAGAACCTGAT+CGG - chr2.4:63561719-63561738 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG + chr2.4:63561742-63561761 MS.gene01024:CDS 40.0%
GACTCCGAAAGATCAGAAAA+TGG - chr2.4:63562233-63562252 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG - chr2.4:63563061-63563080 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG + chr2.4:63563795-63563814 MS.gene01024:CDS 40.0%
GTTGTACGGATGTAATACAC+CGG + chr2.4:63562124-63562143 MS.gene01024:intron 40.0%
TCTTCTTGAAGCTACACTCA+TGG + chr2.4:63561741-63561760 MS.gene01024:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG + chr2.4:63563797-63563816 MS.gene01024:CDS 40.0%
TTCTGTCAACAGATTGTAGC+TGG - chr2.4:63564040-63564059 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG + chr2.4:63561702-63561721 MS.gene01024:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG + chr2.4:63563347-63563366 MS.gene01024:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG - chr2.4:63563955-63563974 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG + chr2.4:63563963-63563982 MS.gene01024:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG + chr2.4:63563949-63563968 MS.gene01024:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG + chr2.4:63563757-63563776 MS.gene01024:CDS 45.0%
AGAGGCTTTACCCTGTCAAA+CGG + chr2.4:63562457-63562476 MS.gene01024:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG - chr2.4:63564034-63564053 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG + chr2.4:63562528-63562547 MS.gene01024:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG + chr2.4:63562487-63562506 MS.gene01024:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG - chr2.4:63562817-63562836 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG + chr2.4:63561604-63561623 MS.gene01024:CDS 45.0%
GTTCGAAATACACGTTCACG+AGG - chr2.4:63562914-63562933 None:intergenic 45.0%
TCCTACCGATCAGGTTCTTA+TGG + chr2.4:63561711-63561730 MS.gene01024:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG - chr2.4:63562849-63562868 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG + chr2.4:63562418-63562437 MS.gene01024:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG + chr2.4:63562134-63562153 MS.gene01024:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG - chr2.4:63562457-63562476 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG + chr2.4:63563346-63563365 MS.gene01024:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG - chr2.4:63561604-63561623 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG - chr2.4:63562034-63562053 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG - chr2.4:63562486-63562505 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG - chr2.4:63562807-63562826 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG + chr2.4:63563144-63563163 MS.gene01024:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG + chr2.4:63562582-63562601 MS.gene01024:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG + chr2.4:63563030-63563049 MS.gene01024:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG - chr2.4:63563668-63563687 None:intergenic 50.0%
CAACAACGTGGGATCGAACA+TGG + chr2.4:63561676-63561695 MS.gene01024:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG - chr2.4:63563773-63563792 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG + chr2.4:63562574-63562593 MS.gene01024:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG + chr2.4:63563031-63563050 MS.gene01024:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG + chr2.4:63562458-63562477 MS.gene01024:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG - chr2.4:63561715-63561734 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG + chr2.4:63562394-63562413 MS.gene01024:intron 50.0%
TCTGCTATGCTCCGCTATAG+CGG - chr2.4:63562522-63562541 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG + chr2.4:63562833-63562852 MS.gene01024:intron 50.0%
TGACACTGACACAGACACGT+TGG + chr2.4:63562056-63562075 MS.gene01024:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG + chr2.4:63562373-63562392 MS.gene01024:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG + chr2.4:63563049-63563068 MS.gene01024:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG - chr2.4:63563050-63563069 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG + chr2.4:63562012-63562031 MS.gene01024:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG - chr2.4:63563049-63563068 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG - chr2.4:63562489-63562508 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG + chr2.4:63563884-63563903 MS.gene01024:CDS 50.0%
! GCTTTGGATCGGTTGAAACG+AGG + chr2.4:63561571-63561590 MS.gene01024:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG + chr2.4:63562542-63562561 MS.gene01024:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG - chr2.4:63562806-63562825 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG + chr2.4:63561588-63561607 MS.gene01024:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG - chr2.4:63562451-63562470 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG - chr2.4:63564031-63564050 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG + chr2.4:63563770-63563789 MS.gene01024:CDS 55.0%
CGTTCACGAGGTATAGGCAC+TGG - chr2.4:63562902-63562921 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG + chr2.4:63561577-63561596 MS.gene01024:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG + chr2.4:63563039-63563058 MS.gene01024:intron 55.0%
TCTCCGTGACCAACACACAC+CGG - chr2.4:63562146-63562165 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG + chr2.4:63562140-63562159 MS.gene01024:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG - chr2.4:63563043-63563062 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG - chr2.4:63564025-63564044 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG - chr2.4:63562884-63562903 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG - chr2.4:63562885-63562904 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG - chr2.4:63562896-63562915 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG + chr2.4:63562023-63562042 MS.gene01024:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG - chr2.4:63562471-63562490 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG + chr2.4:63562868-63562887 MS.gene01024:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG - chr2.4:63562568-63562587 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG - chr2.4:63562470-63562489 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG - chr2.4:63562452-63562471 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG - chr2.4:63562518-63562537 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG + chr2.4:63563803-63563822 MS.gene01024:CDS 60.0%
GGGTAAAGCCTCTCGGACTG+GGG - chr2.4:63562450-63562469 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG + chr2.4:63562496-63562515 MS.gene01024:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG - chr2.4:63562792-63562811 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG - chr2.4:63562886-63562905 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG - chr2.4:63562795-63562814 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG - chr2.4:63562494-63562513 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG - chr2.4:63562872-63562891 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG + chr2.4:63562439-63562458 MS.gene01024:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG + chr2.4:63563816-63563835 MS.gene01024:CDS 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG - chr2.4:63562437-63562456 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG + chr2.4:63562567-63562586 MS.gene01024:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG - chr2.4:63562513-63562532 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG + chr2.4:63562551-63562570 MS.gene01024:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG - chr2.4:63562563-63562582 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG + chr2.4:63562508-63562527 MS.gene01024:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG + chr2.4:63562554-63562573 MS.gene01024:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG - chr2.4:63562555-63562574 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG + chr2.4:63562555-63562574 MS.gene01024:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 63561568 63564094 63561568 ID=MS.gene01024
chr2.4 mRNA 63561568 63564094 63561568 ID=MS.gene01024.t1;Parent=MS.gene01024
chr2.4 exon 63561568 63561763 63561568 ID=MS.gene01024.t1.exon1;Parent=MS.gene01024.t1
chr2.4 CDS 63561568 63561763 63561568 ID=cds.MS.gene01024.t1;Parent=MS.gene01024.t1
chr2.4 exon 63563712 63564094 63563712 ID=MS.gene01024.t1.exon2;Parent=MS.gene01024.t1
chr2.4 CDS 63563712 63564094 63563712 ID=cds.MS.gene01024.t1;Parent=MS.gene01024.t1
Gene Sequence

>MS.gene01024

ATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAACATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAATCTTGCATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAGATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCTGGCTCTTTCCCCAGTCCGAGAGGCTTTACCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGGAGCATAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTGTCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACGTGTATTTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTTAAAGAGAAAGAGCCTTCACCCTTGGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCTCAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGAGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTCTACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene01024.t1

MALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEHGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM