Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01024.t1 | XP_013462866.1 | 99 | 192 | 2 | 0 | 1 | 192 | 31 | 222 | 1.00E-50 | 209.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01024.t1 | A0A072V5J3 | 99.0 | 192 | 2 | 0 | 1 | 192 | 31 | 222 | 7.4e-51 | 209.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene051700 | MS.gene01024 | PPI |
MS.gene01024 | MS.gene027264 | PPI |
MS.gene022965 | MS.gene01024 | PPI |
MS.gene23697 | MS.gene01024 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01024.t1 | MTR_2g023880 | 98.958 | 192 | 2 | 0 | 1 | 192 | 31 | 222 | 1.90e-136 | 380 |
MS.gene01024.t1 | MTR_4g049540 | 60.733 | 191 | 74 | 1 | 1 | 191 | 31 | 220 | 3.76e-82 | 243 |
MS.gene01024.t1 | MTR_2g088060 | 49.738 | 191 | 95 | 1 | 1 | 191 | 31 | 220 | 9.17e-55 | 173 |
MS.gene01024.t1 | MTR_7g056133 | 43.094 | 181 | 95 | 2 | 2 | 175 | 33 | 212 | 6.66e-41 | 138 |
MS.gene01024.t1 | MTR_5g093360 | 55.882 | 68 | 29 | 1 | 2 | 69 | 32 | 98 | 4.05e-22 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene01024.t1 | AT5G42570 | 62.011 | 179 | 67 | 1 | 1 | 179 | 31 | 208 | 1.21e-77 | 231 |
MS.gene01024.t1 | AT1G11905 | 60.000 | 180 | 71 | 1 | 1 | 180 | 31 | 209 | 1.52e-72 | 219 |
MS.gene01024.t1 | AT1G11905 | 55.556 | 180 | 78 | 2 | 1 | 180 | 31 | 208 | 9.55e-61 | 189 |
MS.gene01024.t1 | AT5G48660 | 39.560 | 182 | 102 | 2 | 2 | 176 | 33 | 213 | 1.56e-34 | 122 |
MS.gene01024.t1 | AT3G07190 | 39.011 | 182 | 103 | 2 | 2 | 176 | 33 | 213 | 4.93e-33 | 118 |
MS.gene01024.t1 | AT3G20450 | 52.475 | 101 | 47 | 1 | 3 | 102 | 37 | 137 | 2.57e-28 | 103 |
MS.gene01024.t1 | AT5G48660 | 37.226 | 137 | 79 | 1 | 47 | 176 | 1 | 137 | 9.83e-20 | 81.6 |
Find 43 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTCTCACATATTCTTCT+TGG | 0.219887 | 2.4:-63564078 | None:intergenic |
TCCTACCGATCAGGTTCTTA+TGG | 0.252341 | 2.4:+63561711 | MS.gene01024:CDS |
GTAGCTGGTTGCGGAGGTTT+TGG | 0.307160 | 2.4:-63564022 | None:intergenic |
CTATCATAAGTGCAAGAAAA+AGG | 0.327998 | 2.4:-63563719 | None:intergenic |
GGGGCTGAGGATGCGAAAGC+TGG | 0.347270 | 2.4:+63563816 | MS.gene01024:CDS |
GAAGCTTGTAATAATGGCTT+TGG | 0.364769 | 2.4:+63561555 | None:intergenic |
CCATGCTCTTTCTCCGAATC+CGG | 0.367578 | 2.4:-63563770 | None:intergenic |
AAGCCAGTGTAAGTGCTCTA+AGG | 0.421670 | 2.4:+63563949 | MS.gene01024:CDS |
TTCTGTTAATCCTACCGATC+AGG | 0.442382 | 2.4:+63561702 | MS.gene01024:CDS |
ACAGACTGCATCATTACATA+AGG | 0.453424 | 2.4:+63563742 | MS.gene01024:CDS |
ACATAAGGGAACTCCGGATT+CGG | 0.458900 | 2.4:+63563757 | MS.gene01024:CDS |
ACGAGGTCGTGGACCTGTTA+TGG | 0.464283 | 2.4:+63561588 | MS.gene01024:CDS |
TTCTGTCAACAGATTGTAGC+TGG | 0.470135 | 2.4:-63564037 | None:intergenic |
GAGAGCAGAAGTTGATCGTC+TGG | 0.490422 | 2.4:+63563884 | MS.gene01024:CDS |
CAACAGATTGTAGCTGGTTG+CGG | 0.507849 | 2.4:-63564031 | None:intergenic |
GTTATGGTGAAAACCGTTGC+TGG | 0.514910 | 2.4:+63561604 | MS.gene01024:CDS |
TTCAGATGAAACTAAAACAA+TGG | 0.522908 | 2.4:+63563842 | MS.gene01024:CDS |
GATCGGTTGAAACGAGGTCG+TGG | 0.523142 | 2.4:+63561577 | MS.gene01024:CDS |
ACTTCAGTCAAAAGATAAAG+AGG | 0.526615 | 2.4:+63563914 | MS.gene01024:CDS |
TGAATATGATCGCTTACTTG+AGG | 0.542275 | 2.4:+63563995 | MS.gene01024:CDS |
TTGTAATAATGGCTTTGGAT+CGG | 0.542465 | 2.4:+63561560 | None:intergenic |
AGCTGTTAAGAAACAAATGC+GGG | 0.550293 | 2.4:+63563794 | MS.gene01024:CDS |
TCTTCTTGAAGCTACACTCA+TGG | 0.550488 | 2.4:+63561741 | MS.gene01024:CDS |
CAGACTGCATCATTACATAA+GGG | 0.555282 | 2.4:+63563743 | MS.gene01024:CDS |
CTTCTTGAAGCTACACTCAT+GGG | 0.557141 | 2.4:+63561742 | MS.gene01024:CDS |
CAGATTGTAGCTGGTTGCGG+AGG | 0.567147 | 2.4:-63564028 | None:intergenic |
CAACAACGTGGGATCGAACA+TGG | 0.569692 | 2.4:+63561676 | MS.gene01024:CDS |
GCTCTAAGGAAACAATCTGA+AGG | 0.569864 | 2.4:+63563963 | MS.gene01024:CDS |
ATCATTACATAAGGGAACTC+CGG | 0.575747 | 2.4:+63563751 | MS.gene01024:CDS |
GCCATAAGAACCTGATCGGT+AGG | 0.586898 | 2.4:-63561712 | None:intergenic |
CTCTAAGGAAACAATCTGAA+GGG | 0.587548 | 2.4:+63563964 | MS.gene01024:CDS |
CAGTCAAAAGATAAAGAGGT+AGG | 0.596716 | 2.4:+63563918 | MS.gene01024:CDS |
CCGGATTCGGAGAAAGAGCA+TGG | 0.597596 | 2.4:+63563770 | MS.gene01024:CDS |
GCTTTGGATCGGTTGAAACG+AGG | 0.607033 | 2.4:+63561571 | MS.gene01024:CDS |
TTTCCTTAGAGCACTTACAC+TGG | 0.609208 | 2.4:-63563952 | None:intergenic |
CTTAGCCATAAGAACCTGAT+CGG | 0.613122 | 2.4:-63561716 | None:intergenic |
AACAAGAACAGTACCAGCAA+CGG | 0.621936 | 2.4:-63561617 | None:intergenic |
CTGTTAAGAAACAAATGCGG+GGG | 0.642686 | 2.4:+63563796 | MS.gene01024:CDS |
TGATGAAGATTCAACAACGT+GGG | 0.655476 | 2.4:+63561665 | MS.gene01024:CDS |
GCTGTTAAGAAACAAATGCG+GGG | 0.673517 | 2.4:+63563795 | MS.gene01024:CDS |
AAGCTGTTAAGAAACAAATG+CGG | 0.709469 | 2.4:+63563793 | MS.gene01024:CDS |
TGTTAAGAAACAAATGCGGG+GGG | 0.715839 | 2.4:+63563797 | MS.gene01024:CDS |
ATGATGAAGATTCAACAACG+TGG | 0.740230 | 2.4:+63561664 | MS.gene01024:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTCATAATATGAAATAAAA+GGG | - | chr2.4:63562680-63562699 | None:intergenic | 10.0% |
!! | TATTCATAATATGAAATAAA+AGG | - | chr2.4:63562681-63562700 | None:intergenic | 10.0% |
!! | TTTAATAAGTCTAAATATTA+AGG | - | chr2.4:63563639-63563658 | None:intergenic | 10.0% |
!! | TATAGTATTAAACTTATTAG+TGG | + | chr2.4:63562761-63562780 | MS.gene01024:intron | 15.0% |
!!! | TTGAATTTGATTTATGTTTA+TGG | + | chr2.4:63561846-63561865 | MS.gene01024:intron | 15.0% |
!!! | TTTTACTAGTTGTATATAAT+TGG | + | chr2.4:63562629-63562648 | MS.gene01024:intron | 15.0% |
!!! | TTTTGTAAATATGATCAAAT+AGG | + | chr2.4:63561945-63561964 | MS.gene01024:intron | 15.0% |
!! | AATCATAAGATATATGCATA+TGG | - | chr2.4:63562999-63563018 | None:intergenic | 20.0% |
!! | ATTGTTTATTGATGAGTTAT+TGG | + | chr2.4:63563333-63563352 | MS.gene01024:intron | 20.0% |
!! | TTCTAAACCATTGAAAAAAT+CGG | - | chr2.4:63563227-63563246 | None:intergenic | 20.0% |
!! | TTGATTTATGTTTATGGATT+TGG | + | chr2.4:63561852-63561871 | MS.gene01024:intron | 20.0% |
!!! | AGTATTTCTTTTGAATAGTA+TGG | + | chr2.4:63562736-63562755 | MS.gene01024:intron | 20.0% |
!!! | ATGGGTATGTTTTTTTTAAA+TGG | + | chr2.4:63561760-63561779 | MS.gene01024:intron | 20.0% |
!!! | ATTTTGCTTATAATTAAGAC+TGG | + | chr2.4:63561989-63562008 | MS.gene01024:intron | 20.0% |
!!! | CTATATGATTTGCAATTTTT+AGG | + | chr2.4:63563388-63563407 | MS.gene01024:intron | 20.0% |
!!! | GTTATTGTTTTACTATTGAT+AGG | - | chr2.4:63562609-63562628 | None:intergenic | 20.0% |
!!! | TCTTTGATTTTTAATAAGAC+CGG | + | chr2.4:63563525-63563544 | MS.gene01024:intron | 20.0% |
!!! | TGGGTATGTTTTTTTTAAAT+GGG | + | chr2.4:63561761-63561780 | MS.gene01024:intron | 20.0% |
! | AAGTTTAACAACATACTAGA+TGG | - | chr2.4:63563437-63563456 | None:intergenic | 25.0% |
! | ACTACATTAATGAAAGGAAA+AGG | - | chr2.4:63562262-63562281 | None:intergenic | 25.0% |
! | AGATTGACTACATTAATGAA+AGG | - | chr2.4:63562268-63562287 | None:intergenic | 25.0% |
! | CTACATTAATGAAAGGAAAA+GGG | - | chr2.4:63562261-63562280 | None:intergenic | 25.0% |
! | TTATTAAAAGATATCCTCTG+TGG | + | chr2.4:63563651-63563670 | MS.gene01024:intron | 25.0% |
! | TTCAGATGAAACTAAAACAA+TGG | + | chr2.4:63563842-63563861 | MS.gene01024:CDS | 25.0% |
! | TTTGGAAATATGTTGAACTT+AGG | - | chr2.4:63563484-63563503 | None:intergenic | 25.0% |
!! | AATCATTGTGATTCTTTTTC+AGG | - | chr2.4:63562945-63562964 | None:intergenic | 25.0% |
!! | GAATGAATGAATTTTGTATG+AGG | + | chr2.4:63561821-63561840 | MS.gene01024:intron | 25.0% |
!!! | CAGCAATGTTTTGAAAAATT+TGG | - | chr2.4:63563502-63563521 | None:intergenic | 25.0% |
!!! | GAAGTTTTGAGTAATGTTTA+AGG | + | chr2.4:63562707-63562726 | MS.gene01024:intron | 25.0% |
AAGCTGTTAAGAAACAAATG+CGG | + | chr2.4:63563793-63563812 | MS.gene01024:CDS | 30.0% | |
AAGTTGAAAAATGTGAGCTT+TGG | + | chr2.4:63563287-63563306 | MS.gene01024:intron | 30.0% | |
ACAATGATTCAGCATTCATA+AGG | + | chr2.4:63562956-63562975 | MS.gene01024:intron | 30.0% | |
ACTTCAGTCAAAAGATAAAG+AGG | + | chr2.4:63563914-63563933 | MS.gene01024:CDS | 30.0% | |
AGATCTTCTCAATTTCCAAA+AGG | - | chr2.4:63562194-63562213 | None:intergenic | 30.0% | |
ATTCTTGGTCAATTATTTGC+AGG | + | chr2.4:63563690-63563709 | MS.gene01024:intron | 30.0% | |
CAGTATTGTTTATGTTGGAT+TGG | - | chr2.4:63563594-63563613 | None:intergenic | 30.0% | |
CTATCATAAGTGCAAGAAAA+AGG | - | chr2.4:63563722-63563741 | None:intergenic | 30.0% | |
CTCAACAGTATTGTTTATGT+TGG | - | chr2.4:63563599-63563618 | None:intergenic | 30.0% | |
GAATAACCCAACAAAGAATT+AGG | - | chr2.4:63563177-63563196 | None:intergenic | 30.0% | |
GTTTATTGATGAGTTATTGG+TGG | + | chr2.4:63563336-63563355 | MS.gene01024:intron | 30.0% | |
TGCTTATAATTAAGACTGGA+CGG | + | chr2.4:63561993-63562012 | MS.gene01024:intron | 30.0% | |
TGTTTGCCTAATTCTTTGTT+GGG | + | chr2.4:63563168-63563187 | MS.gene01024:intron | 30.0% | |
TTAAAACAACATAGCTGAAG+AGG | + | chr2.4:63563555-63563574 | MS.gene01024:intron | 30.0% | |
TTGTTTGCCTAATTCTTTGT+TGG | + | chr2.4:63563167-63563186 | MS.gene01024:intron | 30.0% | |
! | ATGGTTTAGAATGAATGTTG+AGG | + | chr2.4:63563236-63563255 | MS.gene01024:intron | 30.0% |
! | TGATCAATCACAAAACCTTT+TGG | + | chr2.4:63562176-63562195 | MS.gene01024:intron | 30.0% |
!! | ACATTTGTAAGAGTGTTGTA+CGG | + | chr2.4:63562110-63562129 | MS.gene01024:intron | 30.0% |
!!! | ATGTTGTTTTAAGATGTGAC+CGG | - | chr2.4:63563547-63563566 | None:intergenic | 30.0% |
!!! | GATTCTTTTTCAGGAAAACA+CGG | - | chr2.4:63562936-63562955 | None:intergenic | 30.0% |
!!! | TTTGCTACCGATTTTTTCAA+TGG | + | chr2.4:63563217-63563236 | MS.gene01024:intron | 30.0% |
AAGAACCATTCGAGAATTGA+AGG | - | chr2.4:63562402-63562421 | None:intergenic | 35.0% | |
ACAGACTGCATCATTACATA+AGG | + | chr2.4:63563742-63563761 | MS.gene01024:CDS | 35.0% | |
ACTCCGAAAGATCAGAAAAT+GGG | - | chr2.4:63562232-63562251 | None:intergenic | 35.0% | |
AGCTGTTAAGAAACAAATGC+GGG | + | chr2.4:63563794-63563813 | MS.gene01024:CDS | 35.0% | |
ATCATTACATAAGGGAACTC+CGG | + | chr2.4:63563751-63563770 | MS.gene01024:CDS | 35.0% | |
ATGATGAAGATTCAACAACG+TGG | + | chr2.4:63561664-63561683 | MS.gene01024:CDS | 35.0% | |
CAGACTGCATCATTACATAA+GGG | + | chr2.4:63563743-63563762 | MS.gene01024:CDS | 35.0% | |
CAGTCAAAAGATAAAGAGGT+AGG | + | chr2.4:63563918-63563937 | MS.gene01024:CDS | 35.0% | |
CTGTTGTCAATGCAGAAATA+CGG | - | chr2.4:63562822-63562841 | None:intergenic | 35.0% | |
GAGAATGTTCTACTTTCTTG+TGG | + | chr2.4:63563309-63563328 | MS.gene01024:intron | 35.0% | |
TGAATATGATCGCTTACTTG+AGG | + | chr2.4:63563995-63564014 | MS.gene01024:CDS | 35.0% | |
TGATGAAGATTCAACAACGT+GGG | + | chr2.4:63561665-63561684 | MS.gene01024:CDS | 35.0% | |
TTCAGCATTCATAAGGCATA+AGG | + | chr2.4:63562963-63562982 | MS.gene01024:intron | 35.0% | |
TTGCGAGCATTATTCATTCT+TGG | + | chr2.4:63563675-63563694 | MS.gene01024:intron | 35.0% | |
! | CTCTAAGGAAACAATCTGAA+GGG | + | chr2.4:63563964-63563983 | MS.gene01024:CDS | 35.0% |
! | GAACCCATTTTCTGATCTTT+CGG | + | chr2.4:63562226-63562245 | MS.gene01024:intron | 35.0% |
! | GTCATATCTAGTTTCCGTAT+CGG | - | chr2.4:63562040-63562059 | None:intergenic | 35.0% |
!!! | TGGTATTTTAGCCTCCTAAT+GGG | + | chr2.4:63563069-63563088 | MS.gene01024:intron | 35.0% |
!!! | TTGGTATTTTAGCCTCCTAA+TGG | + | chr2.4:63563068-63563087 | MS.gene01024:intron | 35.0% |
AACAAGAACAGTACCAGCAA+CGG | - | chr2.4:63561620-63561639 | None:intergenic | 40.0% | |
AATACACGTTCACGAGGTAT+AGG | - | chr2.4:63562908-63562927 | None:intergenic | 40.0% | |
AATCATATGAGCCCATTAGG+AGG | - | chr2.4:63563083-63563102 | None:intergenic | 40.0% | |
AATTAGGCAAACAACCAACG+AGG | - | chr2.4:63563161-63563180 | None:intergenic | 40.0% | |
CTGAATCATATGAGCCCATT+AGG | - | chr2.4:63563086-63563105 | None:intergenic | 40.0% | |
CTGTTAAGAAACAAATGCGG+GGG | + | chr2.4:63563796-63563815 | MS.gene01024:CDS | 40.0% | |
CTTAGCCATAAGAACCTGAT+CGG | - | chr2.4:63561719-63561738 | None:intergenic | 40.0% | |
CTTCTTGAAGCTACACTCAT+GGG | + | chr2.4:63561742-63561761 | MS.gene01024:CDS | 40.0% | |
GACTCCGAAAGATCAGAAAA+TGG | - | chr2.4:63562233-63562252 | None:intergenic | 40.0% | |
GCTAAAATACCAAGAGTGAC+CGG | - | chr2.4:63563061-63563080 | None:intergenic | 40.0% | |
GCTGTTAAGAAACAAATGCG+GGG | + | chr2.4:63563795-63563814 | MS.gene01024:CDS | 40.0% | |
GTTGTACGGATGTAATACAC+CGG | + | chr2.4:63562124-63562143 | MS.gene01024:intron | 40.0% | |
TCTTCTTGAAGCTACACTCA+TGG | + | chr2.4:63561741-63561760 | MS.gene01024:CDS | 40.0% | |
TGTTAAGAAACAAATGCGGG+GGG | + | chr2.4:63563797-63563816 | MS.gene01024:CDS | 40.0% | |
TTCTGTCAACAGATTGTAGC+TGG | - | chr2.4:63564040-63564059 | None:intergenic | 40.0% | |
TTCTGTTAATCCTACCGATC+AGG | + | chr2.4:63561702-63561721 | MS.gene01024:CDS | 40.0% | |
! | AGTTATTGGTGGCATTAGCA+GGG | + | chr2.4:63563347-63563366 | MS.gene01024:intron | 40.0% |
! | TTTCCTTAGAGCACTTACAC+TGG | - | chr2.4:63563955-63563974 | None:intergenic | 40.0% |
!! | GCTCTAAGGAAACAATCTGA+AGG | + | chr2.4:63563963-63563982 | MS.gene01024:CDS | 40.0% |
AAGCCAGTGTAAGTGCTCTA+AGG | + | chr2.4:63563949-63563968 | MS.gene01024:CDS | 45.0% | |
ACATAAGGGAACTCCGGATT+CGG | + | chr2.4:63563757-63563776 | MS.gene01024:CDS | 45.0% | |
AGAGGCTTTACCCTGTCAAA+CGG | + | chr2.4:63562457-63562476 | MS.gene01024:intron | 45.0% | |
CAACAGATTGTAGCTGGTTG+CGG | - | chr2.4:63564034-63564053 | None:intergenic | 45.0% | |
CGGAGCATAGCAGAAAAATC+AGG | + | chr2.4:63562528-63562547 | MS.gene01024:intron | 45.0% | |
CTGTCCTCTGTTGTCAAAAG+CGG | + | chr2.4:63562487-63562506 | MS.gene01024:intron | 45.0% | |
GTCAATGCAGAAATACGGTG+TGG | - | chr2.4:63562817-63562836 | None:intergenic | 45.0% | |
GTTATGGTGAAAACCGTTGC+TGG | + | chr2.4:63561604-63561623 | MS.gene01024:CDS | 45.0% | |
GTTCGAAATACACGTTCACG+AGG | - | chr2.4:63562914-63562933 | None:intergenic | 45.0% | |
TCCTACCGATCAGGTTCTTA+TGG | + | chr2.4:63561711-63561730 | MS.gene01024:CDS | 45.0% | |
TCTAGAAGCTGAACCTAGAC+AGG | - | chr2.4:63562849-63562868 | None:intergenic | 45.0% | |
TCTTGAGTTTACTGTGCCTC+TGG | + | chr2.4:63562418-63562437 | MS.gene01024:intron | 45.0% | |
TGTAATACACCGGTGTGTGT+TGG | + | chr2.4:63562134-63562153 | MS.gene01024:intron | 45.0% | |
TTTGACAGGGTAAAGCCTCT+CGG | - | chr2.4:63562457-63562476 | None:intergenic | 45.0% | |
! | GAGTTATTGGTGGCATTAGC+AGG | + | chr2.4:63563346-63563365 | MS.gene01024:intron | 45.0% |
! | GCAACGGTTTTCACCATAAC+AGG | - | chr2.4:63561604-63561623 | None:intergenic | 45.0% |
! | TCTAGTTTCCGTATCGGATC+CGG | - | chr2.4:63562034-63562053 | None:intergenic | 45.0% |
! | TTTTGACAACAGAGGACAGG+AGG | - | chr2.4:63562486-63562505 | None:intergenic | 45.0% |
AAATACGGTGTGGCGCATAG+CGG | - | chr2.4:63562807-63562826 | None:intergenic | 50.0% | |
ACTTGTGAGTGAAGCCTCGT+TGG | + | chr2.4:63563144-63563163 | MS.gene01024:intron | 50.0% | |
AGAAGTGGAAAGCGGCAAAG+CGG | + | chr2.4:63562582-63562601 | MS.gene01024:intron | 50.0% | |
AGAGAAAGAGCCTTCACCCT+TGG | + | chr2.4:63563030-63563049 | MS.gene01024:intron | 50.0% | |
ATAATGCTCGCAAGCCACAG+AGG | - | chr2.4:63563668-63563687 | None:intergenic | 50.0% | |
CAACAACGTGGGATCGAACA+TGG | + | chr2.4:63561676-63561695 | MS.gene01024:CDS | 50.0% | |
CCATGCTCTTTCTCCGAATC+CGG | - | chr2.4:63563773-63563792 | None:intergenic | 50.0% | |
CGGGTATCAGAAGTGGAAAG+CGG | + | chr2.4:63562574-63562593 | MS.gene01024:intron | 50.0% | |
GAGAAAGAGCCTTCACCCTT+GGG | + | chr2.4:63563031-63563050 | MS.gene01024:intron | 50.0% | |
GAGGCTTTACCCTGTCAAAC+GGG | + | chr2.4:63562458-63562477 | MS.gene01024:intron | 50.0% | |
GCCATAAGAACCTGATCGGT+AGG | - | chr2.4:63561715-63561734 | None:intergenic | 50.0% | |
GGCTGCCTTCAATTCTCGAA+TGG | + | chr2.4:63562394-63562413 | MS.gene01024:intron | 50.0% | |
TCTGCTATGCTCCGCTATAG+CGG | - | chr2.4:63562522-63562541 | None:intergenic | 50.0% | |
TGACAACAGAGCTCCTGTCT+AGG | + | chr2.4:63562833-63562852 | MS.gene01024:intron | 50.0% | |
TGACACTGACACAGACACGT+TGG | + | chr2.4:63562056-63562075 | MS.gene01024:intron | 50.0% | |
TTGCTGCATCTGATGCAGCA+TGG | + | chr2.4:63562373-63562392 | MS.gene01024:intron | 50.0% | |
TTGGGTAAACCGGTCACTCT+TGG | + | chr2.4:63563049-63563068 | MS.gene01024:intron | 50.0% | |
! | AAGAGTGACCGGTTTACCCA+AGG | - | chr2.4:63563050-63563069 | None:intergenic | 50.0% |
! | ACGGAGTATCTGTCAAGCAC+CGG | + | chr2.4:63562012-63562031 | MS.gene01024:intron | 50.0% |
! | AGAGTGACCGGTTTACCCAA+GGG | - | chr2.4:63563049-63563068 | None:intergenic | 50.0% |
! | CGCTTTTGACAACAGAGGAC+AGG | - | chr2.4:63562489-63562508 | None:intergenic | 50.0% |
! | GAGAGCAGAAGTTGATCGTC+TGG | + | chr2.4:63563884-63563903 | MS.gene01024:CDS | 50.0% |
! | GCTTTGGATCGGTTGAAACG+AGG | + | chr2.4:63561571-63561590 | MS.gene01024:CDS | 50.0% |
AAAATCAGGACCACTGCGCC+AGG | + | chr2.4:63562542-63562561 | MS.gene01024:intron | 55.0% | |
AATACGGTGTGGCGCATAGC+GGG | - | chr2.4:63562806-63562825 | None:intergenic | 55.0% | |
ACGAGGTCGTGGACCTGTTA+TGG | + | chr2.4:63561588-63561607 | MS.gene01024:CDS | 55.0% | |
AGGGTAAAGCCTCTCGGACT+GGG | - | chr2.4:63562451-63562470 | None:intergenic | 55.0% | |
CAGATTGTAGCTGGTTGCGG+AGG | - | chr2.4:63564031-63564050 | None:intergenic | 55.0% | |
CCGGATTCGGAGAAAGAGCA+TGG | + | chr2.4:63563770-63563789 | MS.gene01024:CDS | 55.0% | |
CGTTCACGAGGTATAGGCAC+TGG | - | chr2.4:63562902-63562921 | None:intergenic | 55.0% | |
GATCGGTTGAAACGAGGTCG+TGG | + | chr2.4:63561577-63561596 | MS.gene01024:CDS | 55.0% | |
GCCTTCACCCTTGGGTAAAC+CGG | + | chr2.4:63563039-63563058 | MS.gene01024:intron | 55.0% | |
TCTCCGTGACCAACACACAC+CGG | - | chr2.4:63562146-63562165 | None:intergenic | 55.0% | |
! | ACACCGGTGTGTGTTGGTCA+CGG | + | chr2.4:63562140-63562159 | MS.gene01024:intron | 55.0% |
! | ACCGGTTTACCCAAGGGTGA+AGG | - | chr2.4:63563043-63563062 | None:intergenic | 55.0% |
! | GTAGCTGGTTGCGGAGGTTT+TGG | - | chr2.4:63564025-63564044 | None:intergenic | 55.0% |
!! | ACTGGAAGAGGTGCCAACAG+GGG | - | chr2.4:63562884-63562903 | None:intergenic | 55.0% |
!! | CACTGGAAGAGGTGCCAACA+GGG | - | chr2.4:63562885-63562904 | None:intergenic | 55.0% |
!! | CGAGGTATAGGCACTGGAAG+AGG | - | chr2.4:63562896-63562915 | None:intergenic | 55.0% |
!! | GTCAAGCACCGGATCCGATA+CGG | + | chr2.4:63562023-63562042 | MS.gene01024:intron | 55.0% |
ACAGGAGGAGCCCGTTTGAC+AGG | - | chr2.4:63562471-63562490 | None:intergenic | 60.0% | |
ACCTCTCTCAGCTCCCCTGT+TGG | + | chr2.4:63562868-63562887 | MS.gene01024:intron | 60.0% | |
ACTTCTGATACCCGCCGACG+CGG | - | chr2.4:63562568-63562587 | None:intergenic | 60.0% | |
CAGGAGGAGCCCGTTTGACA+GGG | - | chr2.4:63562470-63562489 | None:intergenic | 60.0% | |
CAGGGTAAAGCCTCTCGGAC+TGG | - | chr2.4:63562452-63562471 | None:intergenic | 60.0% | |
CTATGCTCCGCTATAGCGGC+CGG | - | chr2.4:63562518-63562537 | None:intergenic | 60.0% | |
GAAACAAATGCGGGGGGCTG+AGG | + | chr2.4:63563803-63563822 | MS.gene01024:CDS | 60.0% | |
GGGTAAAGCCTCTCGGACTG+GGG | - | chr2.4:63562450-63562469 | None:intergenic | 60.0% | |
GTTGTCAAAAGCGGCCGCAC+CGG | + | chr2.4:63562496-63562515 | MS.gene01024:intron | 60.0% | |
!! | CATAGCGGGCGCTATTTCGG+TGG | - | chr2.4:63562792-63562811 | None:intergenic | 60.0% |
!! | GCACTGGAAGAGGTGCCAAC+AGG | - | chr2.4:63562886-63562905 | None:intergenic | 60.0% |
!! | GCGCATAGCGGGCGCTATTT+CGG | - | chr2.4:63562795-63562814 | None:intergenic | 60.0% |
!!! | GCGGCCGCTTTTGACAACAG+AGG | - | chr2.4:63562494-63562513 | None:intergenic | 60.0% |
GCCAACAGGGGAGCTGAGAG+AGG | - | chr2.4:63562872-63562891 | None:intergenic | 65.0% | |
GGCTCTTTCCCCAGTCCGAG+AGG | + | chr2.4:63562439-63562458 | MS.gene01024:intron | 65.0% | |
GGGGCTGAGGATGCGAAAGC+TGG | + | chr2.4:63563816-63563835 | MS.gene01024:CDS | 65.0% | |
! | CGGACTGGGGAAAGAGCCAG+AGG | - | chr2.4:63562437-63562456 | None:intergenic | 65.0% |
! | GCGTCGGCGGGTATCAGAAG+TGG | + | chr2.4:63562567-63562586 | MS.gene01024:intron | 65.0% |
CTCCGCTATAGCGGCCGGTG+CGG | - | chr2.4:63562513-63562532 | None:intergenic | 70.0% | |
ACCACTGCGCCAGGCCGCGT+CGG | + | chr2.4:63562551-63562570 | MS.gene01024:intron | 75.0% | |
TGATACCCGCCGACGCGGCC+TGG | - | chr2.4:63562563-63562582 | None:intergenic | 75.0% | |
! | GGCCGCACCGGCCGCTATAG+CGG | + | chr2.4:63562508-63562527 | MS.gene01024:intron | 75.0% |
! | ACTGCGCCAGGCCGCGTCGG+CGG | + | chr2.4:63562554-63562573 | MS.gene01024:intron | 80.0% |
! | GCCGACGCGGCCTGGCGCAG+TGG | - | chr2.4:63562555-63562574 | None:intergenic | 85.0% |
!! | CTGCGCCAGGCCGCGTCGGC+GGG | + | chr2.4:63562555-63562574 | MS.gene01024:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 63561568 | 63564094 | 63561568 | ID=MS.gene01024 |
chr2.4 | mRNA | 63561568 | 63564094 | 63561568 | ID=MS.gene01024.t1;Parent=MS.gene01024 |
chr2.4 | exon | 63561568 | 63561763 | 63561568 | ID=MS.gene01024.t1.exon1;Parent=MS.gene01024.t1 |
chr2.4 | CDS | 63561568 | 63561763 | 63561568 | ID=cds.MS.gene01024.t1;Parent=MS.gene01024.t1 |
chr2.4 | exon | 63563712 | 63564094 | 63563712 | ID=MS.gene01024.t1.exon2;Parent=MS.gene01024.t1 |
chr2.4 | CDS | 63563712 | 63564094 | 63563712 | ID=cds.MS.gene01024.t1;Parent=MS.gene01024.t1 |
Gene Sequence |
Protein sequence |