Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010379.t1 | XP_003611768.1 | 98.3 | 351 | 6 | 0 | 1 | 351 | 1 | 351 | 1.50E-201 | 711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010379.t1 | Q9FV50 | 78.1 | 342 | 71 | 2 | 12 | 351 | 11 | 350 | 6.6e-153 | 541.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010379.t1 | G7K801 | 98.3 | 351 | 6 | 0 | 1 | 351 | 1 | 351 | 1.1e-201 | 711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010379 | MS.gene041727 | PPI |
| MS.gene010379 | MS.gene60814 | PPI |
| MS.gene010379 | MS.gene33973 | PPI |
| MS.gene010379 | MS.gene006028 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010379.t1 | MTR_5g017630 | 98.291 | 351 | 6 | 0 | 1 | 351 | 1 | 351 | 0.0 | 725 |
| MS.gene010379.t1 | MTR_5g017630 | 98.350 | 303 | 5 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| MS.gene010379.t1 | MTR_5g053940 | 58.449 | 361 | 135 | 4 | 1 | 351 | 1 | 356 | 2.70e-144 | 412 |
| MS.gene010379.t1 | MTR_5g053940 | 63.226 | 310 | 109 | 1 | 47 | 351 | 23 | 332 | 2.83e-142 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010379.t1 | AT4G37040 | 78.070 | 342 | 71 | 2 | 12 | 351 | 11 | 350 | 0.0 | 550 |
| MS.gene010379.t1 | AT1G13270 | 60.390 | 308 | 117 | 2 | 49 | 351 | 62 | 369 | 5.70e-135 | 389 |
| MS.gene010379.t1 | AT3G25740 | 56.954 | 302 | 121 | 4 | 55 | 349 | 42 | 341 | 1.55e-117 | 344 |
| MS.gene010379.t1 | AT2G45240 | 48.561 | 278 | 137 | 2 | 78 | 349 | 106 | 383 | 2.64e-89 | 274 |
| MS.gene010379.t1 | AT1G13270 | 60.377 | 212 | 79 | 2 | 49 | 255 | 62 | 273 | 5.91e-84 | 256 |
| MS.gene010379.t1 | AT2G45240 | 46.977 | 215 | 109 | 1 | 78 | 287 | 106 | 320 | 7.15e-65 | 209 |
| MS.gene010379.t1 | AT3G25740 | 50.575 | 174 | 71 | 3 | 55 | 219 | 42 | 209 | 6.09e-44 | 152 |
Find 78 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTACCTCGATCACTTTC+TGG | 0.148121 | 5.4:+10774061 | MS.gene010379:CDS |
| TACAGAACCTATGCTGACTA+TGG | 0.239457 | 5.4:+10779339 | MS.gene010379:intron |
| TGCTTTATCTAGGCATTCTT+TGG | 0.262562 | 5.4:-10776639 | None:intergenic |
| TTCTGGAAGGCTTGCTGCTC+AGG | 0.268389 | 5.4:+10774282 | MS.gene010379:CDS |
| ACAGATGTGCATACACTCTT+TGG | 0.287821 | 5.4:-10775111 | None:intergenic |
| AGTGATCATGCAGATAAATA+TGG | 0.316494 | 5.4:+10776827 | MS.gene010379:intron |
| CCAATCTCTTATTCAATAGA+AGG | 0.322925 | 5.4:+10774089 | MS.gene010379:CDS |
| ATTGAATGTATGAGAGCTTC+TGG | 0.324353 | 5.4:+10774265 | MS.gene010379:CDS |
| CACCATTATCAATTATCATT+TGG | 0.331640 | 5.4:-10775056 | None:intergenic |
| TTACTGAAGTGCAGAATAAC+TGG | 0.332632 | 5.4:-10776908 | None:intergenic |
| CGACGTGGAGAAACAATTCC+AGG | 0.340529 | 5.4:-10774148 | None:intergenic |
| GGAGTGGAATACAAGAAAAT+TGG | 0.358013 | 5.4:+10776680 | MS.gene010379:CDS |
| TGGAGGCTTTGTTATGTCCT+TGG | 0.383263 | 5.4:-10774179 | None:intergenic |
| TACCCGTCTCCTCTTGGTTA+TGG | 0.385751 | 5.4:+10775081 | MS.gene010379:CDS |
| CACCAAATGATAATTGATAA+TGG | 0.386505 | 5.4:+10775054 | MS.gene010379:CDS |
| CCTTCTATTGAATAAGAGAT+TGG | 0.388798 | 5.4:-10774089 | None:intergenic |
| ACAACTTACATTTAGATAAA+CGG | 0.389802 | 5.4:-10775285 | None:intergenic |
| CCCCATCAGGTGTTATCAAA+AGG | 0.394761 | 5.4:-10779444 | None:intergenic |
| GGAGGCTTTGTTATGTCCTT+GGG | 0.396406 | 5.4:-10774178 | None:intergenic |
| GTGCAACAGTTTGTTGGCCA+TGG | 0.402876 | 5.4:+10776860 | MS.gene010379:CDS |
| ATATCGATATTGCTTTATCT+AGG | 0.407550 | 5.4:-10776649 | None:intergenic |
| CAATTGTCTTTCCACATCAC+TGG | 0.411722 | 5.4:-10779373 | None:intergenic |
| ACCTCAAGCGAACGTGAATC+TGG | 0.417194 | 5.4:-10775159 | None:intergenic |
| CATGCAGATAAATATGGATA+TGG | 0.420071 | 5.4:+10776833 | MS.gene010379:CDS |
| TGCAACAGTTTGTTGGCCAT+GGG | 0.424319 | 5.4:+10776861 | MS.gene010379:CDS |
| ACCTGAAGTACATGATGAAA+AGG | 0.457990 | 5.4:+10774240 | MS.gene010379:CDS |
| GAACATCTTACTGAATTGTT+CGG | 0.461558 | 5.4:-10776703 | None:intergenic |
| GTCATAATCTCAGCCCCATC+AGG | 0.462099 | 5.4:-10779457 | None:intergenic |
| CAGTGATGTGGAAAGACAAT+TGG | 0.469081 | 5.4:+10779374 | MS.gene010379:CDS |
| TGGACAGTTGTAACAGAAGA+TGG | 0.474162 | 5.4:+10779394 | MS.gene010379:CDS |
| CAGTTTGTTGGCCATGGGGT+TGG | 0.478716 | 5.4:+10776866 | MS.gene010379:CDS |
| CCTGAAGTACATGATGAAAA+GGG | 0.481951 | 5.4:+10774241 | MS.gene010379:CDS |
| CGCAATCCCTGGCGGAACCA+TGG | 0.485545 | 5.4:-10774212 | None:intergenic |
| GCTCAGGTTCTTCAATATGC+TGG | 0.488723 | 5.4:+10774298 | MS.gene010379:CDS |
| GGAATAGTTGAGGAAGTGAT+TGG | 0.489316 | 5.4:-10773927 | None:intergenic |
| CTGTTAAAGTCTTCTTTCAC+CGG | 0.490926 | 5.4:+10773877 | MS.gene010379:CDS |
| GGTGCGTACCCGTCTCCTCT+TGG | 0.492621 | 5.4:+10775075 | MS.gene010379:CDS |
| GTAAAATCCATGGTTCCGCC+AGG | 0.509922 | 5.4:+10774205 | MS.gene010379:CDS |
| CCGTCTCCTCTTGGTTATGG+TGG | 0.510232 | 5.4:+10775084 | MS.gene010379:CDS |
| TTAAATCAAACCTTCACGAT+TGG | 0.513964 | 5.4:+10777590 | MS.gene010379:CDS |
| GGTGTTGTGCAACAGTTTGT+TGG | 0.514303 | 5.4:+10776854 | MS.gene010379:CDS |
| CCCATCAGGTGTTATCAAAA+GGG | 0.517184 | 5.4:-10779443 | None:intergenic |
| ATTTCATCAGTCGTTATGCC+TGG | 0.524254 | 5.4:-10775018 | None:intergenic |
| CAACTATTCCGTTACAGACA+AGG | 0.529560 | 5.4:+10773940 | MS.gene010379:CDS |
| ATCGATATGTGCACCTGGAG+TGG | 0.530627 | 5.4:+10776664 | MS.gene010379:CDS |
| TCAGGTCCACTCGCAATCCC+TGG | 0.530751 | 5.4:-10774223 | None:intergenic |
| AATCGTAAACGCTTGAGACC+TGG | 0.531063 | 5.4:+10774130 | MS.gene010379:CDS |
| ATAGAAACGCACCTTGACTA+AGG | 0.539069 | 5.4:-10774323 | None:intergenic |
| TATGAATTGTAGGGTTATCA+TGG | 0.548429 | 5.4:+10775703 | MS.gene010379:intron |
| AGGTCTCAAGCGTTTACGAT+TGG | 0.553505 | 5.4:-10774128 | None:intergenic |
| GCCTCCATATGTAAAATCCA+TGG | 0.558800 | 5.4:+10774195 | MS.gene010379:CDS |
| CCACCATAACCAAGAGGAGA+CGG | 0.567121 | 5.4:-10775084 | None:intergenic |
| ACCAGATTCACGTTCGCTTG+AGG | 0.570704 | 5.4:+10775158 | MS.gene010379:CDS |
| GGTTGAAACCTTGTCTGTAA+CGG | 0.574103 | 5.4:-10773948 | None:intergenic |
| CACCATAACCAAGAGGAGAC+GGG | 0.579998 | 5.4:-10775083 | None:intergenic |
| AAGAGAAGAGAACATGGCTA+TGG | 0.582836 | 5.4:+10773834 | None:intergenic |
| TTGCGGGGATGTTGATGATG+AGG | 0.585529 | 5.4:+10775747 | MS.gene010379:CDS |
| ACAGAACCTATGCTGACTAT+GGG | 0.591367 | 5.4:+10779340 | MS.gene010379:intron |
| AACGTGAATCTGGTATTCCA+TGG | 0.591774 | 5.4:-10775149 | None:intergenic |
| GTTCCGCCAGGGATTGCGAG+TGG | 0.597034 | 5.4:+10774217 | MS.gene010379:CDS |
| TGTGTTCAAACTGAGCTGAA+AGG | 0.604770 | 5.4:-10779420 | None:intergenic |
| GTGAATGAATGCATTTGCCA+TGG | 0.609251 | 5.4:+10775132 | MS.gene010379:CDS |
| ATATGCTGGCACCTTAGTCA+AGG | 0.610667 | 5.4:+10774312 | MS.gene010379:CDS |
| AATGTATGAGAGCTTCTGGA+AGG | 0.615258 | 5.4:+10774269 | MS.gene010379:CDS |
| TAAAATCCATGGTTCCGCCA+GGG | 0.622525 | 5.4:+10774206 | MS.gene010379:CDS |
| GCAGCGTAAGAATCGATCTC+CGG | 0.624358 | 5.4:-10773896 | None:intergenic |
| GCAATATCGATATGTGCACC+TGG | 0.626501 | 5.4:+10776659 | MS.gene010379:CDS |
| ATGCTGCCCATAGTCAGCAT+AGG | 0.627596 | 5.4:-10779346 | None:intergenic |
| TCCACGTCGAAAAGTTCCCA+AGG | 0.628745 | 5.4:+10774162 | MS.gene010379:CDS |
| TGTCTGTAACGGAATAGTTG+AGG | 0.629364 | 5.4:-10773937 | None:intergenic |
| CTGAAGTACATGATGAAAAG+GGG | 0.629440 | 5.4:+10774242 | MS.gene010379:CDS |
| CAGTGACACGCTGCTGCTCG+CGG | 0.632054 | 5.4:-10773857 | None:intergenic |
| GCAGCATCAATCCAGTGATG+TGG | 0.633825 | 5.4:+10779362 | MS.gene010379:CDS |
| ATAGTTGAGGAAGTGATTGG+TGG | 0.636650 | 5.4:-10773924 | None:intergenic |
| GCAACAGTTTGTTGGCCATG+GGG | 0.649120 | 5.4:+10776862 | MS.gene010379:CDS |
| GTTAAGCCAGAAAGTGATCG+AGG | 0.668909 | 5.4:-10774067 | None:intergenic |
| GGTCCACTCGCAATCCCTGG+CGG | 0.706269 | 5.4:-10774220 | None:intergenic |
| GGAAAACCACCATAACCAAG+AGG | 0.708028 | 5.4:-10775090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAAATTATATATCT+TGG | + | chr5.4:10775200-10775219 | MS.gene010379:intron | 10.0% |
| !! | ATTGTAAAATTATATATCTT+GGG | + | chr5.4:10775201-10775220 | MS.gene010379:intron | 10.0% |
| !! | CAAATAAAATTCATTATATT+TGG | - | chr5.4:10776437-10776456 | None:intergenic | 10.0% |
| !!! | ATTGGTAAAAATATTAATTT+TGG | + | chr5.4:10775947-10775966 | MS.gene010379:intron | 10.0% |
| !!! | TAAGTTGTATAATTTTTTTT+TGG | + | chr5.4:10775300-10775319 | MS.gene010379:intron | 10.0% |
| !! | AATATAATATAATATAAGGG+TGG | - | chr5.4:10777406-10777425 | None:intergenic | 15.0% |
| !! | AATTAAATTGTTGAAATGAT+TGG | + | chr5.4:10774935-10774954 | MS.gene010379:intron | 15.0% |
| !! | AATTCCAAAACATATAAAAA+TGG | - | chr5.4:10775628-10775647 | None:intergenic | 15.0% |
| !! | ATAACAAAATCTATAAATCT+TGG | - | chr5.4:10779277-10779296 | None:intergenic | 15.0% |
| !! | ATTCCAAAACATATAAAAAT+GGG | - | chr5.4:10775627-10775646 | None:intergenic | 15.0% |
| !!! | ATAAATATAGATTTTCAACA+CGG | - | chr5.4:10777008-10777027 | None:intergenic | 15.0% |
| !!! | ATTTAATTTTTTTCTTTACC+TGG | + | chr5.4:10779309-10779328 | MS.gene010379:intron | 15.0% |
| !!! | ATTTATGGTTTTATATTTTC+TGG | + | chr5.4:10776343-10776362 | MS.gene010379:intron | 15.0% |
| !!! | TATTTTGTTCTTTTAAAACA+TGG | + | chr5.4:10775520-10775539 | MS.gene010379:intron | 15.0% |
| !!! | TTCTTGTTATTTTTATTTTC+AGG | + | chr5.4:10777542-10777561 | MS.gene010379:intron | 15.0% |
| !! | AAAATGCAGAATTAAATAAC+AGG | - | chr5.4:10775858-10775877 | None:intergenic | 20.0% |
| !! | AAATATTGAATTGTGACATT+AGG | - | chr5.4:10777840-10777859 | None:intergenic | 20.0% |
| !! | AAATGCAGAATTAAATAACA+GGG | - | chr5.4:10775857-10775876 | None:intergenic | 20.0% |
| !! | AACAATTAGAATAAGTTGTA+AGG | - | chr5.4:10776467-10776486 | None:intergenic | 20.0% |
| !! | ACAACTTACATTTAGATAAA+CGG | - | chr5.4:10775288-10775307 | None:intergenic | 20.0% |
| !! | AGATATTTATTATCTTAGCA+GGG | + | chr5.4:10776194-10776213 | MS.gene010379:intron | 20.0% |
| !! | CATAACAATCTATATTGTAT+TGG | - | chr5.4:10777630-10777649 | None:intergenic | 20.0% |
| !! | CTTAAGTCTATATATAATCA+TGG | + | chr5.4:10779188-10779207 | MS.gene010379:intron | 20.0% |
| !! | TAATTGAAAAGAAGAGAAAA+TGG | - | chr5.4:10773992-10774011 | None:intergenic | 20.0% |
| !! | TAGATATTTATTATCTTAGC+AGG | + | chr5.4:10776193-10776212 | MS.gene010379:intron | 20.0% |
| !! | TATTAACTAACAAACATATG+AGG | + | chr5.4:10774829-10774848 | MS.gene010379:intron | 20.0% |
| !! | TCATATAAACACAAAACAAA+TGG | - | chr5.4:10776583-10776602 | None:intergenic | 20.0% |
| !!! | ACACTAAAACTTGTTAAAAA+GGG | - | chr5.4:10778252-10778271 | None:intergenic | 20.0% |
| !!! | ATATCTGAAATTCAAAAACT+AGG | - | chr5.4:10776086-10776105 | None:intergenic | 20.0% |
| !!! | ATTTTGGATTTTAGATTACT+TGG | + | chr5.4:10775963-10775982 | MS.gene010379:intron | 20.0% |
| !!! | CAACTTATTCTAATTGTTTT+TGG | + | chr5.4:10776469-10776488 | MS.gene010379:intron | 20.0% |
| !!! | GTTTTTCATATATAGAGTTA+AGG | + | chr5.4:10779152-10779171 | MS.gene010379:intron | 20.0% |
| !!! | TATTTTAATTATGATTGCAG+CGG | + | chr5.4:10774575-10774594 | MS.gene010379:intron | 20.0% |
| !!! | TCAAAATTTGTAAAGTACTT+TGG | + | chr5.4:10778709-10778728 | MS.gene010379:intron | 20.0% |
| !!! | TGTATAATTTTTTTTTGGCA+TGG | + | chr5.4:10775305-10775324 | MS.gene010379:intron | 20.0% |
| !!! | TTAATTCATCTAGCTTATTT+TGG | + | chr5.4:10775568-10775587 | MS.gene010379:intron | 20.0% |
| !!! | TTATTTTTACTAGCTTATAG+TGG | - | chr5.4:10774671-10774690 | None:intergenic | 20.0% |
| !!! | TTTACAATTTAAGAGTTTTC+TGG | - | chr5.4:10775189-10775208 | None:intergenic | 20.0% |
| !!! | TTTACCAATATTTTGAAAAC+TGG | - | chr5.4:10775936-10775955 | None:intergenic | 20.0% |
| !!! | TTTTATATTTTCTGGTCAAT+AGG | + | chr5.4:10776351-10776370 | MS.gene010379:intron | 20.0% |
| ! | AAAAAAATTACCAATCGTGA+AGG | - | chr5.4:10777603-10777622 | None:intergenic | 25.0% |
| ! | AAAACCATAAATGAATACCA+AGG | - | chr5.4:10776335-10776354 | None:intergenic | 25.0% |
| ! | AAACATACACCTAACAAATA+AGG | - | chr5.4:10778840-10778859 | None:intergenic | 25.0% |
| ! | AAACCATAAATGAATACCAA+GGG | - | chr5.4:10776334-10776353 | None:intergenic | 25.0% |
| ! | AAAGAAGAGAAAATGGAATT+AGG | - | chr5.4:10773985-10774004 | None:intergenic | 25.0% |
| ! | AAAGAGCTCAATTTCAATTT+GGG | - | chr5.4:10778538-10778557 | None:intergenic | 25.0% |
| ! | AAATAAGAAAGTAGAGATTG+AGG | - | chr5.4:10778644-10778663 | None:intergenic | 25.0% |
| ! | AAATGAATATTTCCAGAAAG+AGG | - | chr5.4:10777343-10777362 | None:intergenic | 25.0% |
| ! | AACATACACCTAACAAATAA+GGG | - | chr5.4:10778839-10778858 | None:intergenic | 25.0% |
| ! | AACATATGGATATGAATTGT+AGG | + | chr5.4:10775693-10775712 | MS.gene010379:intron | 25.0% |
| ! | AATAAGAAAGTAGAGATTGA+GGG | - | chr5.4:10778643-10778662 | None:intergenic | 25.0% |
| ! | ACAAAATCTATAAATCTTGG+AGG | - | chr5.4:10779274-10779293 | None:intergenic | 25.0% |
| ! | ACATATGGATATGAATTGTA+GGG | + | chr5.4:10775694-10775713 | MS.gene010379:intron | 25.0% |
| ! | AGAAGAAGACAAAAAACTAT+AGG | + | chr5.4:10778948-10778967 | MS.gene010379:intron | 25.0% |
| ! | ATAAAACTTGTGCTTTGATT+TGG | + | chr5.4:10775664-10775683 | MS.gene010379:intron | 25.0% |
| ! | ATATCGATATTGCTTTATCT+AGG | - | chr5.4:10776652-10776671 | None:intergenic | 25.0% |
| ! | CACCAAATGATAATTGATAA+TGG | + | chr5.4:10775054-10775073 | MS.gene010379:CDS | 25.0% |
| ! | CACCATTATCAATTATCATT+TGG | - | chr5.4:10775059-10775078 | None:intergenic | 25.0% |
| ! | CATTCAAAACTTAATACCAT+AGG | - | chr5.4:10776284-10776303 | None:intergenic | 25.0% |
| ! | CTATCATAAATCATGTCTAT+AGG | - | chr5.4:10779000-10779019 | None:intergenic | 25.0% |
| ! | CTTGTGGAATGTAAAATATA+GGG | - | chr5.4:10777264-10777283 | None:intergenic | 25.0% |
| ! | GTTATTGAATTTGTAGTGTT+TGG | + | chr5.4:10774480-10774499 | MS.gene010379:intron | 25.0% |
| ! | GTTTGGATAAAATATGTGAA+CGG | - | chr5.4:10777445-10777464 | None:intergenic | 25.0% |
| ! | TAAAGAGCTCAATTTCAATT+TGG | - | chr5.4:10778539-10778558 | None:intergenic | 25.0% |
| ! | TATAACAGTATAAGCTAACA+GGG | - | chr5.4:10777302-10777321 | None:intergenic | 25.0% |
| ! | TATAGACTTAAGAGTCTATT+AGG | - | chr5.4:10779180-10779199 | None:intergenic | 25.0% |
| ! | TTCTGAATTTATGTGGAATA+AGG | - | chr5.4:10776758-10776777 | None:intergenic | 25.0% |
| ! | TTCTTTCACTACATAAAAGT+TGG | + | chr5.4:10777210-10777229 | MS.gene010379:intron | 25.0% |
| !! | ACATATGAGGTTGTTATTAT+TGG | + | chr5.4:10774842-10774861 | MS.gene010379:intron | 25.0% |
| !! | ATTTAGAGTTATTGCATTAG+AGG | + | chr5.4:10778924-10778943 | MS.gene010379:intron | 25.0% |
| !! | CGAATTTAAAACTGTTTGTT+TGG | + | chr5.4:10777369-10777388 | MS.gene010379:intron | 25.0% |
| !! | CTATATTTTACATTCCACAA+GGG | + | chr5.4:10777263-10777282 | MS.gene010379:intron | 25.0% |
| !! | GGAAATAATGATTTTACTCT+TGG | + | chr5.4:10778398-10778417 | MS.gene010379:intron | 25.0% |
| !! | TGTAAAGTACTTTGGTATTT+GGG | + | chr5.4:10778717-10778736 | MS.gene010379:intron | 25.0% |
| !! | TGTTTTGTGTTTATATGAGT+GGG | + | chr5.4:10776585-10776604 | MS.gene010379:intron | 25.0% |
| !! | TTGTAAAGTACTTTGGTATT+TGG | + | chr5.4:10778716-10778735 | MS.gene010379:intron | 25.0% |
| !!! | ATTAAGTTTTGAATGAGACA+CGG | + | chr5.4:10776289-10776308 | MS.gene010379:intron | 25.0% |
| !!! | ATTTTCTTTTATTTGCAGGA+TGG | + | chr5.4:10775239-10775258 | MS.gene010379:intron | 25.0% |
| !!! | CTTATTTTTGCTTTTTGTTC+GGG | + | chr5.4:10775335-10775354 | MS.gene010379:intron | 25.0% |
| !!! | GACACTAAAACTTGTTAAAA+AGG | - | chr5.4:10778253-10778272 | None:intergenic | 25.0% |
| !!! | GCTTATTTTTGCTTTTTGTT+CGG | + | chr5.4:10775334-10775353 | MS.gene010379:intron | 25.0% |
| !!! | GTTTAATGCACTTTTTGTAA+TGG | + | chr5.4:10775997-10776016 | MS.gene010379:intron | 25.0% |
| !!! | TAAACTTTTTGAAAACCCAT+CGG | + | chr5.4:10778764-10778783 | MS.gene010379:intron | 25.0% |
| !!! | TATTTATTTTACTGCTTACG+AGG | + | chr5.4:10777021-10777040 | MS.gene010379:intron | 25.0% |
| !!! | TGACATTTTCTTTTATTTGC+AGG | + | chr5.4:10775235-10775254 | MS.gene010379:intron | 25.0% |
| !!! | TTGCCCATTTTTATATGTTT+TGG | + | chr5.4:10775621-10775640 | MS.gene010379:intron | 25.0% |
| !!! | TTGTTTTGTGTTTATATGAG+TGG | + | chr5.4:10776584-10776603 | MS.gene010379:intron | 25.0% |
| !!! | TTTTCTTTCCCTTATTTGTT+AGG | + | chr5.4:10778828-10778847 | MS.gene010379:intron | 25.0% |
| AAAGGAAAGAGAATTTCTCA+AGG | - | chr5.4:10777905-10777924 | None:intergenic | 30.0% | |
| AAATAAGTGGCTTACATACA+TGG | - | chr5.4:10778099-10778118 | None:intergenic | 30.0% | |
| AATACCATAGGATATTCTAC+TGG | - | chr5.4:10776272-10776291 | None:intergenic | 30.0% | |
| ACAAACATAACTCTGAATAG+AGG | - | chr5.4:10777514-10777533 | None:intergenic | 30.0% | |
| ACATAAATTCAGAAAACCTC+TGG | + | chr5.4:10776764-10776783 | MS.gene010379:intron | 30.0% | |
| ACTATAGGCTAAAGATTTAG+AGG | + | chr5.4:10778963-10778982 | MS.gene010379:intron | 30.0% | |
| AGAAAATGGAATTAGGAAGA+AGG | - | chr5.4:10773978-10773997 | None:intergenic | 30.0% | |
| AGCTACTCTACTGTATTATA+TGG | + | chr5.4:10776165-10776184 | MS.gene010379:intron | 30.0% | |
| AGTGATCATGCAGATAAATA+TGG | + | chr5.4:10776827-10776846 | MS.gene010379:intron | 30.0% | |
| AGTTCATGATGTCTATATGA+GGG | + | chr5.4:10778788-10778807 | MS.gene010379:intron | 30.0% | |
| ATACAATTTCCAGGAATAAG+TGG | - | chr5.4:10776384-10776403 | None:intergenic | 30.0% | |
| ATGACTAAAAAAGACCCATT+TGG | - | chr5.4:10774723-10774742 | None:intergenic | 30.0% | |
| ATGATTATTGTTTGCAAAGC+TGG | + | chr5.4:10777661-10777680 | MS.gene010379:intron | 30.0% | |
| ATTCAATAACCTAGCTTATC+TGG | - | chr5.4:10774470-10774489 | None:intergenic | 30.0% | |
| CAAATTTAAATTTGGCAGTG+TGG | - | chr5.4:10778024-10778043 | None:intergenic | 30.0% | |
| CAATAAACTACATCTGCTAT+CGG | - | chr5.4:10774415-10774434 | None:intergenic | 30.0% | |
| CACAATTACTCCAAAATAAG+TGG | - | chr5.4:10778112-10778131 | None:intergenic | 30.0% | |
| CACACTGCCAAATTTAAATT+TGG | + | chr5.4:10778022-10778041 | MS.gene010379:intron | 30.0% | |
| CATGCAGATAAATATGGATA+TGG | + | chr5.4:10776833-10776852 | MS.gene010379:CDS | 30.0% | |
| CCAATCTCTTATTCAATAGA+AGG | + | chr5.4:10774089-10774108 | MS.gene010379:CDS | 30.0% | |
| CCTTCTATTGAATAAGAGAT+TGG | - | chr5.4:10774092-10774111 | None:intergenic | 30.0% | |
| CCTTGTGGAATGTAAAATAT+AGG | - | chr5.4:10777265-10777284 | None:intergenic | 30.0% | |
| CTCACTAAAGCAAGTTTAAA+GGG | - | chr5.4:10779243-10779262 | None:intergenic | 30.0% | |
| CTTCATTCATTCTTTGTAAC+AGG | + | chr5.4:10774019-10774038 | MS.gene010379:intron | 30.0% | |
| GAACATCTTACTGAATTGTT+CGG | - | chr5.4:10776706-10776725 | None:intergenic | 30.0% | |
| GAATTCATTATGAAAACCTG+AGG | + | chr5.4:10776019-10776038 | MS.gene010379:intron | 30.0% | |
| GACCTGTATCAATCAAATAA+GGG | - | chr5.4:10776618-10776637 | None:intergenic | 30.0% | |
| GCAGCTTCCAAATTTAAATT+TGG | - | chr5.4:10778032-10778051 | None:intergenic | 30.0% | |
| GTAGTGTTTGGTAAATTTAG+CGG | + | chr5.4:10774492-10774511 | MS.gene010379:intron | 30.0% | |
| GTATAACAGTATAAGCTAAC+AGG | - | chr5.4:10777303-10777322 | None:intergenic | 30.0% | |
| TAGGTTCTGTAAAATTTACC+AGG | - | chr5.4:10779330-10779349 | None:intergenic | 30.0% | |
| TAGTTCATGATGTCTATATG+AGG | + | chr5.4:10778787-10778806 | MS.gene010379:intron | 30.0% | |
| TATCCCTTGGTATTCATTTA+TGG | + | chr5.4:10776328-10776347 | MS.gene010379:intron | 30.0% | |
| TATGAATTGTAGGGTTATCA+TGG | + | chr5.4:10775703-10775722 | MS.gene010379:intron | 30.0% | |
| TCTCACTAAAGCAAGTTTAA+AGG | - | chr5.4:10779244-10779263 | None:intergenic | 30.0% | |
| TGAAAATGATCTGACAATGA+AGG | - | chr5.4:10778485-10778504 | None:intergenic | 30.0% | |
| TGACCTGTATCAATCAAATA+AGG | - | chr5.4:10776619-10776638 | None:intergenic | 30.0% | |
| TTAAATCAAACCTTCACGAT+TGG | + | chr5.4:10777590-10777609 | MS.gene010379:CDS | 30.0% | |
| TTATGGGATATACAATTTCC+AGG | - | chr5.4:10776393-10776412 | None:intergenic | 30.0% | |
| TTCAGATATTGTGCTAACAA+AGG | + | chr5.4:10776097-10776116 | MS.gene010379:intron | 30.0% | |
| TTTCATATACTCGTTCCAAA+GGG | - | chr5.4:10776137-10776156 | None:intergenic | 30.0% | |
| TTTGGTAAAACGTTAGTCAA+CGG | - | chr5.4:10776419-10776438 | None:intergenic | 30.0% | |
| ! | ACAATGTTGCATTTTATGAG+CGG | + | chr5.4:10778882-10778901 | MS.gene010379:intron | 30.0% |
| ! | AGAGGTTTTCTGAATTTATG+TGG | - | chr5.4:10776765-10776784 | None:intergenic | 30.0% |
| ! | CAATTTAAGAGTTTTCTGGA+AGG | - | chr5.4:10775185-10775204 | None:intergenic | 30.0% |
| ! | CAGTCCAGTTTTCAAAATAT+TGG | + | chr5.4:10775929-10775948 | MS.gene010379:intron | 30.0% |
| ! | CCTATATTTTACATTCCACA+AGG | + | chr5.4:10777262-10777281 | MS.gene010379:intron | 30.0% |
| ! | GAATGCTTTTATATTCCCTT+TGG | + | chr5.4:10776119-10776138 | MS.gene010379:intron | 30.0% |
| ! | GTAAAAATAATGGAAGTGAG+TGG | + | chr5.4:10778377-10778396 | MS.gene010379:intron | 30.0% |
| ! | GTAAAGTACTTTGGTATTTG+GGG | + | chr5.4:10778718-10778737 | MS.gene010379:intron | 30.0% |
| ! | GTTGTTATTATTGGTTAGTG+CGG | + | chr5.4:10774851-10774870 | MS.gene010379:intron | 30.0% |
| ! | GTTTTGTGTTTATATGAGTG+GGG | + | chr5.4:10776586-10776605 | MS.gene010379:intron | 30.0% |
| ! | TCAGATCATTTTCACCTTAA+AGG | + | chr5.4:10778491-10778510 | MS.gene010379:intron | 30.0% |
| ! | TGTATGTAAGCCACTTATTT+TGG | + | chr5.4:10778099-10778118 | MS.gene010379:intron | 30.0% |
| ! | TTGTTATTATTGGTTAGTGC+GGG | + | chr5.4:10774852-10774871 | MS.gene010379:intron | 30.0% |
| ! | TTTTCATATACTCGTTCCAA+AGG | - | chr5.4:10776138-10776157 | None:intergenic | 30.0% |
| !! | ATCACATTTTGAAGAAACTG+TGG | + | chr5.4:10779121-10779140 | MS.gene010379:intron | 30.0% |
| !! | ATTTTGAAAACATGACACCA+AGG | - | chr5.4:10778696-10778715 | None:intergenic | 30.0% |
| !! | TGATTTGGTGATTGAACATA+TGG | + | chr5.4:10775679-10775698 | MS.gene010379:intron | 30.0% |
| !! | TTGTTTTCTGTTGCATTGAT+TGG | + | chr5.4:10777705-10777724 | MS.gene010379:intron | 30.0% |
| !! | TTTTGAAAACATGACACCAA+GGG | - | chr5.4:10778695-10778714 | None:intergenic | 30.0% |
| !!! | AATTTTTTTTTGGCATGGCA+GGG | + | chr5.4:10775310-10775329 | MS.gene010379:intron | 30.0% |
| !!! | TAATTTTTTTTTGGCATGGC+AGG | + | chr5.4:10775309-10775328 | MS.gene010379:intron | 30.0% |
| !!! | TGTTTTCTGTTGCATTGATT+GGG | + | chr5.4:10777706-10777725 | MS.gene010379:intron | 30.0% |
| AACAAAACCTTATTCCAGCA+GGG | - | chr5.4:10779061-10779080 | None:intergenic | 35.0% | |
| AAGGAAAGCGAAATGATGAA+AGG | - | chr5.4:10777886-10777905 | None:intergenic | 35.0% | |
| AATGATCTGACAATGAAGGA+TGG | - | chr5.4:10778481-10778500 | None:intergenic | 35.0% | |
| AATTCTCTTTCCTTTCCACT+TGG | + | chr5.4:10777910-10777929 | MS.gene010379:intron | 35.0% | |
| ACCTGAAGTACATGATGAAA+AGG | + | chr5.4:10774240-10774259 | MS.gene010379:CDS | 35.0% | |
| AGAAAAGCAATCACATCTGA+CGG | - | chr5.4:10777484-10777503 | None:intergenic | 35.0% | |
| AGTTCACACGTCCAAAAATA+TGG | + | chr5.4:10777998-10778017 | MS.gene010379:intron | 35.0% | |
| ATTACAATCCTAAGACACGT+AGG | - | chr5.4:10774807-10774826 | None:intergenic | 35.0% | |
| ATTGAATGTATGAGAGCTTC+TGG | + | chr5.4:10774265-10774284 | MS.gene010379:CDS | 35.0% | |
| CAACAATATAGCACAAGAAG+AGG | - | chr5.4:10775455-10775474 | None:intergenic | 35.0% | |
| CATGTCTATAGGCAAACTAT+TGG | - | chr5.4:10778989-10779008 | None:intergenic | 35.0% | |
| CCTGAAGTACATGATGAAAA+GGG | + | chr5.4:10774241-10774260 | MS.gene010379:CDS | 35.0% | |
| CTAGCGCTTGGTAAAAATAA+TGG | + | chr5.4:10778367-10778386 | MS.gene010379:intron | 35.0% | |
| CTATCCAGTAGAATATCCTA+TGG | + | chr5.4:10776265-10776284 | MS.gene010379:intron | 35.0% | |
| CTCTTCTTGTGCTATATTGT+TGG | + | chr5.4:10775453-10775472 | MS.gene010379:intron | 35.0% | |
| CTGAAGTACATGATGAAAAG+GGG | + | chr5.4:10774242-10774261 | MS.gene010379:CDS | 35.0% | |
| CTGTTAAAGTCTTCTTTCAC+CGG | + | chr5.4:10773877-10773896 | MS.gene010379:CDS | 35.0% | |
| CTTGGTATGATTGAACAGTA+GGG | + | chr5.4:10778416-10778435 | MS.gene010379:intron | 35.0% | |
| GAATAAGGAAATGCAGGAAT+GGG | - | chr5.4:10776743-10776762 | None:intergenic | 35.0% | |
| GATTGAGGGAATGGAAAATT+TGG | - | chr5.4:10778629-10778648 | None:intergenic | 35.0% | |
| GCGGAAATATTAGATGAGAT+AGG | + | chr5.4:10778901-10778920 | MS.gene010379:intron | 35.0% | |
| GGAGTGGAATACAAGAAAAT+TGG | + | chr5.4:10776680-10776699 | MS.gene010379:CDS | 35.0% | |
| GGCTTCTTTGTCAAGTTTAA+TGG | - | chr5.4:10777243-10777262 | None:intergenic | 35.0% | |
| GTATAAGGAAGAATATCCCT+TGG | + | chr5.4:10776315-10776334 | MS.gene010379:intron | 35.0% | |
| GTTGAAATTTCCAAGTGGAA+AGG | - | chr5.4:10777923-10777942 | None:intergenic | 35.0% | |
| TAAACACAAAACAAATGGCG+AGG | - | chr5.4:10776578-10776597 | None:intergenic | 35.0% | |
| TATAAGCTAAAGCAAGTTCC+AGG | + | chr5.4:10778663-10778682 | MS.gene010379:intron | 35.0% | |
| TATATAGAGGGTAGTGAAAG+TGG | + | chr5.4:10778303-10778322 | MS.gene010379:intron | 35.0% | |
| TATATCATCCTTGAAGCAAG+TGG | - | chr5.4:10774361-10774380 | None:intergenic | 35.0% | |
| TATGTGGAATAAGGAAATGC+AGG | - | chr5.4:10776749-10776768 | None:intergenic | 35.0% | |
| TCTTGGTATGATTGAACAGT+AGG | + | chr5.4:10778415-10778434 | MS.gene010379:intron | 35.0% | |
| TCTTGTGCTATATTGTTGGA+GGG | + | chr5.4:10775457-10775476 | MS.gene010379:intron | 35.0% | |
| TGAATATTTCCAGAAAGAGG+TGG | - | chr5.4:10777340-10777359 | None:intergenic | 35.0% | |
| TGAGGCTAAAAAACTAGTTC+AGG | + | chr5.4:10775765-10775784 | MS.gene010379:CDS | 35.0% | |
| TGATATATTCCACCTCTTTC+TGG | + | chr5.4:10777328-10777347 | MS.gene010379:intron | 35.0% | |
| TGATGAATCATATAGTCCAG+AGG | - | chr5.4:10776783-10776802 | None:intergenic | 35.0% | |
| TGCTTTATCTAGGCATTCTT+TGG | - | chr5.4:10776642-10776661 | None:intergenic | 35.0% | |
| TGGATGTTGAGATACTATTC+TGG | + | chr5.4:10776489-10776508 | MS.gene010379:intron | 35.0% | |
| TTACAATCCTAAGACACGTA+GGG | - | chr5.4:10774806-10774825 | None:intergenic | 35.0% | |
| TTACTGAAGTGCAGAATAAC+TGG | - | chr5.4:10776911-10776930 | None:intergenic | 35.0% | |
| TTCTTGTGCTATATTGTTGG+AGG | + | chr5.4:10775456-10775475 | MS.gene010379:intron | 35.0% | |
| ! | ACATCGACAACTTTCTTTTG+CGG | + | chr5.4:10775730-10775749 | MS.gene010379:CDS | 35.0% |
| ! | ACCATGGATTTTACATATGG+AGG | - | chr5.4:10774199-10774218 | None:intergenic | 35.0% |
| ! | ATTTTCTTGTATTCCACTCC+AGG | - | chr5.4:10776680-10776699 | None:intergenic | 35.0% |
| ! | CTCCCTTATTTGATTGATAC+AGG | + | chr5.4:10776613-10776632 | MS.gene010379:intron | 35.0% |
| ! | GATAGCTTTACAGTTTACGT+TGG | - | chr5.4:10776250-10776269 | None:intergenic | 35.0% |
| ! | GGAACCATGGATTTTACATA+TGG | - | chr5.4:10774202-10774221 | None:intergenic | 35.0% |
| ! | GGATTTTAGATTACTTGGTC+TGG | + | chr5.4:10775968-10775987 | MS.gene010379:intron | 35.0% |
| ! | TATCTGCTACTTCTCCTTTA+AGG | - | chr5.4:10778508-10778527 | None:intergenic | 35.0% |
| ! | TTGGACGTGTGAACTTTTAT+TGG | - | chr5.4:10777993-10778012 | None:intergenic | 35.0% |
| !! | ACGTTAGTCAACGGATTTTA+TGG | - | chr5.4:10776410-10776429 | None:intergenic | 35.0% |
| !! | CGTTAGTCAACGGATTTTAT+GGG | - | chr5.4:10776409-10776428 | None:intergenic | 35.0% |
| !! | TTTTCAGGAAACAACGAAGA+TGG | + | chr5.4:10777557-10777576 | MS.gene010379:intron | 35.0% |
| !!! | ACTGTTTTAATTGTGGAGGA+TGG | + | chr5.4:10778277-10778296 | MS.gene010379:intron | 35.0% |
| !!! | ATTTTTGCTTTTTGTTCGGG+TGG | + | chr5.4:10775338-10775357 | MS.gene010379:intron | 35.0% |
| !!! | GCTAACTGTTTTAATTGTGG+AGG | + | chr5.4:10778273-10778292 | MS.gene010379:intron | 35.0% |
| !!! | GGCAAAAGTATTTTGAGGTT+TGG | - | chr5.4:10777462-10777481 | None:intergenic | 35.0% |
| !!! | GTCGCTAACTGTTTTAATTG+TGG | + | chr5.4:10778270-10778289 | MS.gene010379:intron | 35.0% |
| !!! | TTTTTGCTTTTTGTTCGGGT+GGG | + | chr5.4:10775339-10775358 | MS.gene010379:intron | 35.0% |
| AAATAACCTATAAGCTCGCG+AGG | + | chr5.4:10774685-10774704 | MS.gene010379:intron | 40.0% | |
| AAATACACCCTACGTGTCTT+AGG | + | chr5.4:10774796-10774815 | MS.gene010379:intron | 40.0% | |
| AACCTGAGGAATTACAGAGA+AGG | + | chr5.4:10776033-10776052 | MS.gene010379:intron | 40.0% | |
| AACGTGAATCTGGTATTCCA+TGG | - | chr5.4:10775152-10775171 | None:intergenic | 40.0% | |
| AAGTTCCAGGAATATACCCT+TGG | + | chr5.4:10778676-10778695 | MS.gene010379:intron | 40.0% | |
| AATGAGACACGGAGTGTATA+AGG | + | chr5.4:10776300-10776319 | MS.gene010379:intron | 40.0% | |
| AATGTATGAGAGCTTCTGGA+AGG | + | chr5.4:10774269-10774288 | MS.gene010379:CDS | 40.0% | |
| AATTGCAACAGCTCAGATGT+GGG | + | chr5.4:10778190-10778209 | MS.gene010379:intron | 40.0% | |
| ACAAAACCTTATTCCAGCAG+GGG | - | chr5.4:10779060-10779079 | None:intergenic | 40.0% | |
| ACAGATGTGCATACACTCTT+TGG | - | chr5.4:10775114-10775133 | None:intergenic | 40.0% | |
| ACCTGAGGAATTACAGAGAA+GGG | + | chr5.4:10776034-10776053 | MS.gene010379:intron | 40.0% | |
| AGACATCATGAACTACCGAT+GGG | - | chr5.4:10778782-10778801 | None:intergenic | 40.0% | |
| AGGAAGTAACGGTTACCAAA+TGG | + | chr5.4:10774705-10774724 | MS.gene010379:intron | 40.0% | |
| AGGAGAAGTAGCAGATATTG+TGG | + | chr5.4:10778511-10778530 | MS.gene010379:intron | 40.0% | |
| ATAGAAACGCACCTTGACTA+AGG | - | chr5.4:10774326-10774345 | None:intergenic | 40.0% | |
| ATAGTTGAGGAAGTGATTGG+TGG | - | chr5.4:10773927-10773946 | None:intergenic | 40.0% | |
| ATGCCTATCCATATGGTATG+TGG | - | chr5.4:10778074-10778093 | None:intergenic | 40.0% | |
| ATTGTGCACTGCATAGACTA+AGG | + | chr5.4:10777152-10777171 | MS.gene010379:intron | 40.0% | |
| ATTTCATCAGTCGTTATGCC+TGG | - | chr5.4:10775021-10775040 | None:intergenic | 40.0% | |
| CAACAAAACCTTATTCCAGC+AGG | - | chr5.4:10779062-10779081 | None:intergenic | 40.0% | |
| CAACTATTCCGTTACAGACA+AGG | + | chr5.4:10773940-10773959 | MS.gene010379:CDS | 40.0% | |
| CAATTGTCTTTCCACATCAC+TGG | - | chr5.4:10779376-10779395 | None:intergenic | 40.0% | |
| CAGTGATGTGGAAAGACAAT+TGG | + | chr5.4:10779374-10779393 | MS.gene010379:CDS | 40.0% | |
| CCTGTTTATTAAGCTACGCA+AGG | - | chr5.4:10777945-10777964 | None:intergenic | 40.0% | |
| CCTTGCGTAGCTTAATAAAC+AGG | + | chr5.4:10777942-10777961 | MS.gene010379:intron | 40.0% | |
| CTAGGTAAGTCCTTACTCTA+AGG | - | chr5.4:10776068-10776087 | None:intergenic | 40.0% | |
| CTGACCATTGAACTAGTTCA+CGG | - | chr5.4:10775912-10775931 | None:intergenic | 40.0% | |
| CTTGTGCTATATTGTTGGAG+GGG | + | chr5.4:10775458-10775477 | MS.gene010379:intron | 40.0% | |
| GAAAAGCAATCACATCTGAC+GGG | - | chr5.4:10777483-10777502 | None:intergenic | 40.0% | |
| GAAAGTAGAGATTGAGGGAA+TGG | - | chr5.4:10778638-10778657 | None:intergenic | 40.0% | |
| GATACTACCCACATACCATA+TGG | + | chr5.4:10778063-10778082 | MS.gene010379:intron | 40.0% | |
| GCAAGGTTGAAATTTCCAAG+TGG | - | chr5.4:10777928-10777947 | None:intergenic | 40.0% | |
| GCCTCCATATGTAAAATCCA+TGG | + | chr5.4:10774195-10774214 | MS.gene010379:CDS | 40.0% | |
| GGAAGTAACGGTTACCAAAT+GGG | + | chr5.4:10774706-10774725 | MS.gene010379:intron | 40.0% | |
| GGAATAAGGAAATGCAGGAA+TGG | - | chr5.4:10776744-10776763 | None:intergenic | 40.0% | |
| GGAATAGTTGAGGAAGTGAT+TGG | - | chr5.4:10773930-10773949 | None:intergenic | 40.0% | |
| GGAATGGGAGAACAAATGAT+AGG | - | chr5.4:10776728-10776747 | None:intergenic | 40.0% | |
| GGAGGATGGTACTATATAGA+GGG | + | chr5.4:10778291-10778310 | MS.gene010379:intron | 40.0% | |
| GGGTCTAAATCCTTAGAGTA+AGG | + | chr5.4:10776055-10776074 | MS.gene010379:intron | 40.0% | |
| GGTTGAAACCTTGTCTGTAA+CGG | - | chr5.4:10773951-10773970 | None:intergenic | 40.0% | |
| GTGAATGAATGCATTTGCCA+TGG | + | chr5.4:10775132-10775151 | MS.gene010379:CDS | 40.0% | |
| GTTTATCTTCATGCCAACGA+TGG | + | chr5.4:10775793-10775812 | MS.gene010379:intron | 40.0% | |
| TAAGACACGTAGGGTGTATT+TGG | - | chr5.4:10774797-10774816 | None:intergenic | 40.0% | |
| TACCCACATACCATATGGAT+AGG | + | chr5.4:10778068-10778087 | MS.gene010379:intron | 40.0% | |
| TAGACATCATGAACTACCGA+TGG | - | chr5.4:10778783-10778802 | None:intergenic | 40.0% | |
| TAGCTGATACCAGATAAGCT+AGG | + | chr5.4:10774458-10774477 | MS.gene010379:intron | 40.0% | |
| TATAAGCTAACAGGGACCTT+TGG | - | chr5.4:10777294-10777313 | None:intergenic | 40.0% | |
| TCGTTGGCATGAAGATAAAC+TGG | - | chr5.4:10775793-10775812 | None:intergenic | 40.0% | |
| TGAACCGTGAACTAGTTCAA+TGG | + | chr5.4:10775905-10775924 | MS.gene010379:intron | 40.0% | |
| TGCCTATCCATATGGTATGT+GGG | - | chr5.4:10778073-10778092 | None:intergenic | 40.0% | |
| TGGAATTAGGAAGAAGGAGA+AGG | - | chr5.4:10773972-10773991 | None:intergenic | 40.0% | |
| TGGACAGTTGTAACAGAAGA+TGG | + | chr5.4:10779394-10779413 | MS.gene010379:CDS | 40.0% | |
| TGGAGGATGGTACTATATAG+AGG | + | chr5.4:10778290-10778309 | MS.gene010379:intron | 40.0% | |
| TGTGTTCAAACTGAGCTGAA+AGG | - | chr5.4:10779423-10779442 | None:intergenic | 40.0% | |
| TTCCACAAGGGAAAAACCAA+AGG | + | chr5.4:10777275-10777294 | MS.gene010379:intron | 40.0% | |
| TTGTGCACTGCATAGACTAA+GGG | + | chr5.4:10777153-10777172 | MS.gene010379:intron | 40.0% | |
| ! | ACAGAACCTATGCTGACTAT+GGG | + | chr5.4:10779340-10779359 | MS.gene010379:intron | 40.0% |
| ! | ATCGACAACTTTCTTTTGCG+GGG | + | chr5.4:10775732-10775751 | MS.gene010379:CDS | 40.0% |
| ! | CATCGACAACTTTCTTTTGC+GGG | + | chr5.4:10775731-10775750 | MS.gene010379:CDS | 40.0% |
| ! | CCCATCAGGTGTTATCAAAA+GGG | - | chr5.4:10779446-10779465 | None:intergenic | 40.0% |
| ! | CCCTTTTCATCATGTACTTC+AGG | - | chr5.4:10774244-10774263 | None:intergenic | 40.0% |
| ! | TACAGAACCTATGCTGACTA+TGG | + | chr5.4:10779339-10779358 | MS.gene010379:intron | 40.0% |
| ! | TGTCTGTAACGGAATAGTTG+AGG | - | chr5.4:10773940-10773959 | None:intergenic | 40.0% |
| ! | TTATTGGTTAGTGCGGGAAA+AGG | + | chr5.4:10774858-10774877 | MS.gene010379:intron | 40.0% |
| ! | TTTAACTTCTGTTGACAGCC+AGG | + | chr5.4:10775000-10775019 | MS.gene010379:intron | 40.0% |
| ! | TTTTACCAAGCGCTAGATCA+GGG | - | chr5.4:10778363-10778382 | None:intergenic | 40.0% |
| ! | TTTTTACCAAGCGCTAGATC+AGG | - | chr5.4:10778364-10778383 | None:intergenic | 40.0% |
| !! | ACCCTTTTGATAACACCTGA+TGG | + | chr5.4:10779442-10779461 | MS.gene010379:CDS | 40.0% |
| !! | CCCTTTTGATAACACCTGAT+GGG | + | chr5.4:10779443-10779462 | MS.gene010379:CDS | 40.0% |
| !! | CCTTTTGATAACACCTGATG+GGG | + | chr5.4:10779444-10779463 | MS.gene010379:CDS | 40.0% |
| !!! | TGACGGGCAAAAGTATTTTG+AGG | - | chr5.4:10777467-10777486 | None:intergenic | 40.0% |
| !!! | TTTTGCTTTTTGTTCGGGTG+GGG | + | chr5.4:10775340-10775359 | MS.gene010379:intron | 40.0% |
| AATAACAGGGCACAGACGTA+TGG | - | chr5.4:10775844-10775863 | None:intergenic | 45.0% | |
| AATCGTAAACGCTTGAGACC+TGG | + | chr5.4:10774130-10774149 | MS.gene010379:CDS | 45.0% | |
| ACTACTGTACTACTGAGACG+AGG | - | chr5.4:10775406-10775425 | None:intergenic | 45.0% | |
| AGGTCTCAAGCGTTTACGAT+TGG | - | chr5.4:10774131-10774150 | None:intergenic | 45.0% | |
| ATAAGCTCGCGAGGAAGTAA+CGG | + | chr5.4:10774694-10774713 | MS.gene010379:intron | 45.0% | |
| ATAGACTAAGGGGTTGAAGG+AGG | + | chr5.4:10777164-10777183 | MS.gene010379:intron | 45.0% | |
| ATATGCTGGCACCTTAGTCA+AGG | + | chr5.4:10774312-10774331 | MS.gene010379:CDS | 45.0% | |
| ATTGCAACAGCTCAGATGTG+GGG | + | chr5.4:10778191-10778210 | MS.gene010379:intron | 45.0% | |
| CAAAACCTTATTCCAGCAGG+GGG | - | chr5.4:10779059-10779078 | None:intergenic | 45.0% | |
| CAGTTACCTCGATCACTTTC+TGG | + | chr5.4:10774061-10774080 | MS.gene010379:CDS | 45.0% | |
| CATGGCAATGCCTATCCATA+TGG | - | chr5.4:10778081-10778100 | None:intergenic | 45.0% | |
| CCTGAGGAATTACAGAGAAG+GGG | + | chr5.4:10776035-10776054 | MS.gene010379:intron | 45.0% | |
| GAAAGTGGAGTGGAATGGAA+TGG | + | chr5.4:10778318-10778337 | MS.gene010379:intron | 45.0% | |
| GAATTGCAACAGCTCAGATG+TGG | + | chr5.4:10778189-10778208 | MS.gene010379:intron | 45.0% | |
| GCAATATCGATATGTGCACC+TGG | + | chr5.4:10776659-10776678 | MS.gene010379:CDS | 45.0% | |
| GCTCAGGTTCTTCAATATGC+TGG | + | chr5.4:10774298-10774317 | MS.gene010379:CDS | 45.0% | |
| GGAAAACCACCATAACCAAG+AGG | - | chr5.4:10775093-10775112 | None:intergenic | 45.0% | |
| GGAGATGTACCACTTATTCC+TGG | + | chr5.4:10776372-10776391 | MS.gene010379:intron | 45.0% | |
| GTAGTGAAAGTGGAGTGGAA+TGG | + | chr5.4:10778313-10778332 | MS.gene010379:intron | 45.0% | |
| GTTAAGCCAGAAAGTGATCG+AGG | - | chr5.4:10774070-10774089 | None:intergenic | 45.0% | |
| TAAAATCCATGGTTCCGCCA+GGG | + | chr5.4:10774206-10774225 | MS.gene010379:CDS | 45.0% | |
| TAGCAGGGCAGTAAGTAACT+AGG | + | chr5.4:10776209-10776228 | MS.gene010379:intron | 45.0% | |
| TGCATAGACTAAGGGGTTGA+AGG | + | chr5.4:10777161-10777180 | MS.gene010379:intron | 45.0% | |
| TGCTATATTGTTGGAGGGGA+CGG | + | chr5.4:10775462-10775481 | MS.gene010379:intron | 45.0% | |
| TGTGCACTGCATAGACTAAG+GGG | + | chr5.4:10777154-10777173 | MS.gene010379:intron | 45.0% | |
| TTACTTCCTCGCGAGCTTAT+AGG | - | chr5.4:10774694-10774713 | None:intergenic | 45.0% | |
| ! | AGGACATAAGCGTTGTAAGC+AGG | - | chr5.4:10775435-10775454 | None:intergenic | 45.0% |
| ! | CCCCATCAGGTGTTATCAAA+AGG | - | chr5.4:10779447-10779466 | None:intergenic | 45.0% |
| ! | GGACATAAGCGTTGTAAGCA+GGG | - | chr5.4:10775434-10775453 | None:intergenic | 45.0% |
| ! | GGTGTTGTGCAACAGTTTGT+TGG | + | chr5.4:10776854-10776873 | MS.gene010379:CDS | 45.0% |
| ! | TACGTTGGCACAAGTACTGT+AGG | - | chr5.4:10776235-10776254 | None:intergenic | 45.0% |
| ! | TGACACCAAGGGTATATTCC+TGG | - | chr5.4:10778684-10778703 | None:intergenic | 45.0% |
| ! | TGGCAGTGTGGCCATATTTT+TGG | - | chr5.4:10778012-10778031 | None:intergenic | 45.0% |
| !! | CTTTTTCGCCACTTGCTTCA+AGG | + | chr5.4:10774350-10774369 | MS.gene010379:intron | 45.0% |
| !! | GGAGGCTTTGTTATGTCCTT+GGG | - | chr5.4:10774181-10774200 | None:intergenic | 45.0% |
| !! | TGCAACAGTTTGTTGGCCAT+GGG | + | chr5.4:10776861-10776880 | MS.gene010379:CDS | 45.0% |
| !! | TGGAGGCTTTGTTATGTCCT+TGG | - | chr5.4:10774182-10774201 | None:intergenic | 45.0% |
| !!! | GACCTTTGGTTTTTCCCTTG+TGG | - | chr5.4:10777280-10777299 | None:intergenic | 45.0% |
| !! | TTCAATATAATATAATATAA+GGG | - | chr5.4:10777409-10777428 | None:intergenic | 5.0% |
| !! | TTTCAATATAATATAATATA+AGG | - | chr5.4:10777410-10777429 | None:intergenic | 5.0% |
| !!! | TTATCATTTTTAAAAATTAA+AGG | - | chr5.4:10777068-10777087 | None:intergenic | 5.0% |
| AACAGCTCAGATGTGGGGAA+GGG | + | chr5.4:10778196-10778215 | MS.gene010379:intron | 50.0% | |
| ACCAGATTCACGTTCGCTTG+AGG | + | chr5.4:10775158-10775177 | MS.gene010379:CDS | 50.0% | |
| ACCTCAAGCGAACGTGAATC+TGG | - | chr5.4:10775162-10775181 | None:intergenic | 50.0% | |
| AGAGGGTAGTGAAAGTGGAG+TGG | + | chr5.4:10778308-10778327 | MS.gene010379:intron | 50.0% | |
| AGCAGGGGGAATCAGCTATA+TGG | - | chr5.4:10779045-10779064 | None:intergenic | 50.0% | |
| ATCGATATGTGCACCTGGAG+TGG | + | chr5.4:10776664-10776683 | MS.gene010379:CDS | 50.0% | |
| ATGCTGCCCATAGTCAGCAT+AGG | - | chr5.4:10779349-10779368 | None:intergenic | 50.0% | |
| CACCAAATCACAGCCATCGT+TGG | - | chr5.4:10775809-10775828 | None:intergenic | 50.0% | |
| CACCATAACCAAGAGGAGAC+GGG | - | chr5.4:10775086-10775105 | None:intergenic | 50.0% | |
| CCACCATAACCAAGAGGAGA+CGG | - | chr5.4:10775087-10775106 | None:intergenic | 50.0% | |
| CCCCTTCTCTGTAATTCCTC+AGG | - | chr5.4:10776038-10776057 | None:intergenic | 50.0% | |
| CGACGTGGAGAAACAATTCC+AGG | - | chr5.4:10774151-10774170 | None:intergenic | 50.0% | |
| GAAAAACACGTCCAACCCCA+TGG | - | chr5.4:10776880-10776899 | None:intergenic | 50.0% | |
| GCAGCATCAATCCAGTGATG+TGG | + | chr5.4:10779362-10779381 | MS.gene010379:CDS | 50.0% | |
| GCAGCGTAAGAATCGATCTC+CGG | - | chr5.4:10773899-10773918 | None:intergenic | 50.0% | |
| GTAAAATCCATGGTTCCGCC+AGG | + | chr5.4:10774205-10774224 | MS.gene010379:CDS | 50.0% | |
| GTCATAATCTCAGCCCCATC+AGG | - | chr5.4:10779460-10779479 | None:intergenic | 50.0% | |
| TAAGGGGTTGAAGGAGGCAA+GGG | + | chr5.4:10777170-10777189 | MS.gene010379:intron | 50.0% | |
| TACCCGTCTCCTCTTGGTTA+TGG | + | chr5.4:10775081-10775100 | MS.gene010379:CDS | 50.0% | |
| TATATTGTTGGAGGGGACGG+AGG | + | chr5.4:10775465-10775484 | MS.gene010379:intron | 50.0% | |
| TCCACGTCGAAAAGTTCCCA+AGG | + | chr5.4:10774162-10774181 | MS.gene010379:CDS | 50.0% | |
| TGATTCCCCCTGCTGGAATA+AGG | + | chr5.4:10779051-10779070 | MS.gene010379:intron | 50.0% | |
| TGCCAACGATGGCTGTGATT+TGG | + | chr5.4:10775804-10775823 | MS.gene010379:intron | 50.0% | |
| ! | ATATAGCTGATTCCCCCTGC+TGG | + | chr5.4:10779044-10779063 | MS.gene010379:intron | 50.0% |
| ! | TCCTTGGGAACTTTTCGACG+TGG | - | chr5.4:10774166-10774185 | None:intergenic | 50.0% |
| !! | GCAACAGTTTGTTGGCCATG+GGG | + | chr5.4:10776862-10776881 | MS.gene010379:CDS | 50.0% |
| !! | GTGCAACAGTTTGTTGGCCA+TGG | + | chr5.4:10776860-10776879 | MS.gene010379:CDS | 50.0% |
| !! | TTGCGGGGATGTTGATGATG+AGG | + | chr5.4:10775747-10775766 | MS.gene010379:CDS | 50.0% |
| ACAGCTCAGATGTGGGGAAG+GGG | + | chr5.4:10778197-10778216 | MS.gene010379:intron | 55.0% | |
| CAACAGCTCAGATGTGGGGA+AGG | + | chr5.4:10778195-10778214 | MS.gene010379:intron | 55.0% | |
| CCGTCTCCTCTTGGTTATGG+TGG | + | chr5.4:10775084-10775103 | MS.gene010379:CDS | 55.0% | |
| CTAAGGGGTTGAAGGAGGCA+AGG | + | chr5.4:10777169-10777188 | MS.gene010379:intron | 55.0% | |
| GGTTGAAGGAGGCAAGGGTT+TGG | + | chr5.4:10777175-10777194 | MS.gene010379:intron | 55.0% | |
| TGACTCCCTGATCTAGCGCT+TGG | + | chr5.4:10778355-10778374 | MS.gene010379:intron | 55.0% | |
| ! | CTTTTTGTTCGGGTGGGGAG+GGG | + | chr5.4:10775345-10775364 | MS.gene010379:intron | 55.0% |
| ! | GCTTTTTGTTCGGGTGGGGA+GGG | + | chr5.4:10775344-10775363 | MS.gene010379:intron | 55.0% |
| ! | TTTTTGTTCGGGTGGGGAGG+GGG | + | chr5.4:10775346-10775365 | MS.gene010379:intron | 55.0% |
| !! | CAGTTTGTTGGCCATGGGGT+TGG | + | chr5.4:10776866-10776885 | MS.gene010379:CDS | 55.0% |
| !! | TGCTTTTTGTTCGGGTGGGG+AGG | + | chr5.4:10775343-10775362 | MS.gene010379:intron | 55.0% |
| !! | TTCTGGAAGGCTTGCTGCTC+AGG | + | chr5.4:10774282-10774301 | MS.gene010379:CDS | 55.0% |
| TCAGGTCCACTCGCAATCCC+TGG | - | chr5.4:10774226-10774245 | None:intergenic | 60.0% | |
| ! | AGATGTGGGGAAGGGGTGCA+TGG | + | chr5.4:10778204-10778223 | MS.gene010379:intron | 60.0% |
| ! | GATGTGGGGAAGGGGTGCAT+GGG | + | chr5.4:10778205-10778224 | MS.gene010379:intron | 60.0% |
| CAGTGACACGCTGCTGCTCG+CGG | - | chr5.4:10773860-10773879 | None:intergenic | 65.0% | |
| CGCAATCCCTGGCGGAACCA+TGG | - | chr5.4:10774215-10774234 | None:intergenic | 65.0% | |
| GGTCCACTCGCAATCCCTGG+CGG | - | chr5.4:10774223-10774242 | None:intergenic | 65.0% | |
| GGTGCGTACCCGTCTCCTCT+TGG | + | chr5.4:10775075-10775094 | MS.gene010379:CDS | 65.0% | |
| GTTCCGCCAGGGATTGCGAG+TGG | + | chr5.4:10774217-10774236 | MS.gene010379:CDS | 65.0% | |
| TGTTGGAGGGGACGGAGGCT+AGG | + | chr5.4:10775470-10775489 | MS.gene010379:intron | 65.0% | |
| !! | GTGGGGAGGGGGACTAGTCA+TGG | + | chr5.4:10775357-10775376 | MS.gene010379:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 10773847 | 10779489 | 10773847 | ID=MS.gene010379 |
| chr5.4 | mRNA | 10773847 | 10779489 | 10773847 | ID=MS.gene010379.t1;Parent=MS.gene010379 |
| chr5.4 | exon | 10773847 | 10773961 | 10773847 | ID=MS.gene010379.t1.exon1;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10773847 | 10773961 | 10773847 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10774041 | 10774333 | 10774041 | ID=MS.gene010379.t1.exon2;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10774041 | 10774333 | 10774041 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10775018 | 10775179 | 10775018 | ID=MS.gene010379.t1.exon3;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10775018 | 10775179 | 10775018 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10775257 | 10775298 | 10775257 | ID=MS.gene010379.t1.exon4;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10775257 | 10775298 | 10775257 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10775715 | 10775786 | 10775715 | ID=MS.gene010379.t1.exon5;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10775715 | 10775786 | 10775715 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10776635 | 10776714 | 10776635 | ID=MS.gene010379.t1.exon6;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10776635 | 10776714 | 10776635 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10776829 | 10776926 | 10776829 | ID=MS.gene010379.t1.exon7;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10776829 | 10776926 | 10776829 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10777564 | 10777611 | 10777564 | ID=MS.gene010379.t1.exon8;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10777564 | 10777611 | 10777564 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| chr5.4 | exon | 10779344 | 10779489 | 10779344 | ID=MS.gene010379.t1.exon9;Parent=MS.gene010379.t1 |
| chr5.4 | CDS | 10779344 | 10779489 | 10779344 | ID=cds.MS.gene010379.t1;Parent=MS.gene010379.t1 |
| Gene Sequence |
| Protein sequence |
