AlfalfaGEDB | MS.gene041727

M. sativa cultivar XinJiangDaYe / MS.gene041727

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041727.t1	XP_024641404.1	87.7	503	57	2	1	498	1	503	9.90E-255	889

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041727.t1	Q9C8N5	53.6	515	201	9	1	496	1	496	9.7e-134	478.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041727.t1	A0A396JZF2	87.7	503	57	2	1	498	1	503	7.1e-255	889.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene041727.t1	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene010379	MS.gene041727	PPI
MS.gene041727	MS.gene067410	PPI
MS.gene22302	MS.gene041727	PPI
MS.gene041727	MS.gene21670	PPI
MS.gene041727	MS.gene047652	PPI
MS.gene061812	MS.gene041727	PPI
MS.gene069594	MS.gene041727	PPI
MS.gene22301	MS.gene041727	PPI
MS.gene048934	MS.gene041727	PPI
MS.gene08082	MS.gene041727	PPI
MS.gene041727	MS.gene83538	PPI
MS.gene04096	MS.gene041727	PPI
MS.gene57326	MS.gene041727	PPI
MS.gene28044	MS.gene041727	PPI
MS.gene041727	MS.gene024691	PPI
MS.gene030841	MS.gene041727	PPI
MS.gene041727	MS.gene06078	PPI
MS.gene84543	MS.gene041727	PPI
MS.gene024690	MS.gene041727	PPI
MS.gene04398	MS.gene041727	PPI
MS.gene045142	MS.gene041727	PPI
MS.gene21669	MS.gene041727	PPI
MS.gene55805	MS.gene041727	PPI
MS.gene86407	MS.gene041727	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041727.t1	MTR_1g093095	41.447	152	83	6	239	387	107	255	2.57e-26	108
MS.gene041727.t1	MTR_1g112270	36.076	158	88	5	224	381	63	207	1.66e-24	107
MS.gene041727.t1	MTR_1g112270	35.762	151	85	4	231	381	58	196	3.12e-24	106
MS.gene041727.t1	MTR_4g059870	34.868	152	86	4	231	381	52	191	3.30e-24	105
MS.gene041727.t1	MTR_8g017210	34.731	167	92	5	219	381	61	214	9.20e-24	104
MS.gene041727.t1	MTR_2g099990	34.503	171	95	5	215	381	41	198	3.48e-23	102
MS.gene041727.t1	MTR_2g093960	35.099	151	87	4	231	381	46	185	8.49e-23	100
MS.gene041727.t1	MTR_1g094115	33.775	151	88	4	231	381	61	199	9.09e-23	102
MS.gene041727.t1	MTR_1g016010	35.099	151	87	3	231	381	55	194	3.86e-22	99.4
MS.gene041727.t1	MTR_2g099990	36.170	141	78	3	241	381	1	129	5.45e-21	95.5
MS.gene041727.t1	MTR_2g090745	31.765	170	101	4	215	381	2	159	8.57e-21	95.1
MS.gene041727.t1	MTR_1g094115	35.000	140	79	4	242	381	55	182	1.11e-20	95.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041727.t1	AT1G34370	54.951	515	194	8	1	496	1	496	1.98e-178	510
MS.gene041727.t1	AT1G34370	54.951	515	194	8	1	496	1	496	1.98e-178	510
MS.gene041727.t1	AT1G34370	70.588	289	75	4	214	496	2	286	3.98e-141	407
MS.gene041727.t1	AT5G22890	39.828	349	180	9	64	401	39	368	3.34e-75	241
MS.gene041727.t1	AT1G51220	37.423	163	92	5	228	387	160	315	9.68e-26	108
MS.gene041727.t1	AT1G34790	40.645	155	79	7	238	387	136	282	2.01e-25	106
MS.gene041727.t1	AT1G13290	38.764	178	96	8	220	392	76	245	2.31e-25	106
MS.gene041727.t1	AT3G20880	39.073	151	82	5	240	387	250	393	1.02e-24	106
MS.gene041727.t1	AT1G08290	33.333	201	122	6	193	387	124	318	1.51e-24	104
MS.gene041727.t1	AT3G45260	33.918	171	98	4	231	401	53	208	3.28e-24	105
MS.gene041727.t1	AT3G45260	33.918	171	98	4	231	401	53	208	3.28e-24	105
MS.gene041727.t1	AT5G44160	34.437	151	87	3	231	381	51	189	3.88e-24	105
MS.gene041727.t1	AT5G66730	34.437	151	87	3	231	381	46	184	5.56e-24	105
MS.gene041727.t1	AT5G44160	34.437	151	87	3	231	381	12	150	6.09e-24	104
MS.gene041727.t1	AT3G57670	36.364	176	96	6	215	382	181	348	6.78e-24	103
MS.gene041727.t1	AT5G60470	35.135	148	85	3	231	378	58	194	1.51e-23	103
MS.gene041727.t1	AT5G60470	35.135	148	85	3	231	378	54	190	1.62e-23	103
MS.gene041727.t1	AT1G03840	34.437	151	87	3	231	381	55	193	1.66e-23	103
MS.gene041727.t1	AT1G03840	34.437	151	87	3	231	381	53	191	1.80e-23	103
MS.gene041727.t1	AT5G60470	35.135	148	85	3	231	378	49	185	1.91e-23	103
MS.gene041727.t1	AT5G03150	35.294	153	84	4	231	381	67	206	2.15e-23	103
MS.gene041727.t1	AT1G14580	33.775	151	88	3	231	381	67	205	3.97e-23	102
MS.gene041727.t1	AT1G14580	33.775	151	88	3	231	381	67	205	3.97e-23	102
MS.gene041727.t1	AT1G14580	33.775	151	88	3	231	381	81	219	4.63e-23	102
MS.gene041727.t1	AT1G55110	33.775	151	89	3	231	381	77	216	8.28e-23	101
MS.gene041727.t1	AT1G55110	33.775	151	89	3	231	381	77	216	8.28e-23	101
MS.gene041727.t1	AT1G55110	33.775	151	89	3	231	381	77	216	8.28e-23	101
MS.gene041727.t1	AT2G02080	33.775	151	88	3	231	381	68	206	9.21e-23	101
MS.gene041727.t1	AT2G02080	33.775	151	88	3	231	381	68	206	9.21e-23	101
MS.gene041727.t1	AT2G02080	33.775	151	88	3	231	381	68	206	9.21e-23	101
MS.gene041727.t1	AT2G02080	33.775	151	88	3	231	381	68	206	9.21e-23	101
MS.gene041727.t1	AT3G50700	35.762	151	85	3	231	381	48	186	9.56e-23	101
MS.gene041727.t1	AT2G02070	33.775	151	88	3	231	381	66	204	1.40e-22	101
MS.gene041727.t1	AT2G02070	33.775	151	88	3	231	381	66	204	1.40e-22	101
MS.gene041727.t1	AT3G13810	34.437	151	88	3	231	381	84	223	1.75e-22	100
MS.gene041727.t1	AT3G13810	34.437	151	88	3	231	381	84	223	1.75e-22	100
MS.gene041727.t1	AT3G13810	35.220	159	91	4	223	381	64	210	1.78e-22	100
MS.gene041727.t1	AT3G13810	34.437	151	88	3	231	381	79	218	1.80e-22	100
MS.gene041727.t1	AT3G13810	35.220	159	91	4	223	381	78	224	1.81e-22	100
MS.gene041727.t1	AT3G13810	34.437	151	88	3	231	381	65	204	1.92e-22	100
MS.gene041727.t1	AT4G02670	35.099	151	87	3	231	381	69	208	2.05e-21	96.7
MS.gene041727.t1	AT4G02670	35.099	151	87	3	231	381	67	206	2.21e-21	96.7
MS.gene041727.t1	AT2G02080	34.752	141	80	3	241	381	1	129	1.32e-20	94.7
MS.gene041727.t1	AT2G02080	34.752	141	80	3	241	381	1	129	1.32e-20	94.7
MS.gene041727.t1	AT1G25250	33.333	159	95	5	221	378	14	162	9.45e-18	85.1
MS.gene041727.t1	AT1G68130	34.899	149	85	6	231	378	55	192	3.18e-17	84.3
MS.gene041727.t1	AT1G25250	34.228	149	87	5	231	378	47	185	4.37e-17	83.6
MS.gene041727.t1	AT2G01940	32.886	149	88	5	231	378	58	195	7.72e-17	83.2
MS.gene041727.t1	AT2G01940	32.847	137	80	5	231	366	58	183	3.41e-14	75.1

Find 109 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATTCCCACCCTGTAAAA+AGG	0.182953	1.1:+69275229	None:intergenic
TCAAATCCTTCAAGTGAAAA+TGG	0.239095	1.1:-69274068	MS.gene041727:CDS
CATGATTCACCACCAGATTT+AGG	0.245532	1.1:+69273873	None:intergenic
TTTAATTATGCTCCTAAATC+TGG	0.266493	1.1:-69273885	MS.gene041727:CDS
TGCACCATTTCACAATTATT+AGG	0.289796	1.1:+69274743	None:intergenic
AACTTTGAAGGCTGTAACTT+TGG	0.308561	1.1:-69273981	MS.gene041727:CDS
AACACTGTGGCAAGGATAAA+TGG	0.316031	1.1:-69274271	MS.gene041727:CDS
GCAAAACCACACAAAGAAAC+TGG	0.316849	1.1:-69274497	MS.gene041727:CDS
TCGAACTCAGTCTGTGATTC+CGG	0.317053	1.1:-69275176	MS.gene041727:CDS
GGAAGCATGAACTTCTGTTT+TGG	0.324815	1.1:-69274092	MS.gene041727:CDS
AACGGGATTAGCCTTCCTTT+TGG	0.342253	1.1:-69274845	MS.gene041727:CDS
TTCTCACCTTTGAACTTTGA+AGG	0.355262	1.1:-69273993	MS.gene041727:CDS
GGAGTCTTCTCCCTTCTGTT+AGG	0.361673	1.1:-69274916	MS.gene041727:CDS
CTGGGCTAGGTCCTCTTCCT+TGG	0.390105	1.1:-69275299	MS.gene041727:CDS
GAAGCTTGTGTGCTAACAAC+TGG	0.402631	1.1:-69275318	MS.gene041727:CDS
AAATGGATCTGATAGCATTA+TGG	0.409807	1.1:-69274051	MS.gene041727:CDS
GACAGCTTAGCCAACTTAAC+GGG	0.414271	1.1:-69274862	MS.gene041727:CDS
TTTCGATCAGTCCATTCATA+AGG	0.416970	1.1:-69274771	MS.gene041727:CDS
GAATAGCCGGTGTATGGCCT+TGG	0.434473	1.1:+69274186	None:intergenic
CCGGTGTATGGCCTTGGAAA+AGG	0.435593	1.1:+69274192	None:intergenic
AAGATTGAAATGAATCCAAC+TGG	0.437188	1.1:-69275340	None:intergenic
AGTTCACGCGGTTGTTCAAA+AGG	0.437372	1.1:+69275010	None:intergenic
ACATAAAGACGAAGAAGATA+TGG	0.453200	1.1:-69274696	MS.gene041727:CDS
GTGGCTCGGCAGATCCTTTG+TGG	0.455339	1.1:+69274153	None:intergenic
ATTAGGTACATCCTTATGAA+TGG	0.455946	1.1:+69274760	None:intergenic
CGGTGTATGGCCTTGGAAAA+GGG	0.459444	1.1:+69274193	None:intergenic
GAATCTTCAAATGGAGGTTG+AGG	0.464007	1.1:+69273942	None:intergenic
CAATCAAATGCACAAGATCC+TGG	0.464133	1.1:+69275050	None:intergenic
GAGCCTTCTGAATCTTCAAA+TGG	0.464855	1.1:+69273933	None:intergenic
TGATATTAAGATCACTGATC+AGG	0.471924	1.1:-69275152	MS.gene041727:CDS
GTTACGCTTGCAGCCACCAT+AGG	0.472872	1.1:+69274439	None:intergenic
CCATACACCGGCTATTCCTT+CGG	0.472983	1.1:-69274180	MS.gene041727:CDS
AAACGAGTAAACTTCAAGAC+TGG	0.479681	1.1:-69275129	MS.gene041727:CDS
GGACAGCTTAGCCAACTTAA+CGG	0.484196	1.1:-69274863	MS.gene041727:CDS
CGATGTGACACCAGAGAAAA+CGG	0.484392	1.1:-69274125	MS.gene041727:CDS
GAATACCTCTTGATAAGCTT+CGG	0.485383	1.1:+69274467	None:intergenic
AAAGGTGAGAAATAATTGAT+AGG	0.486126	1.1:+69274005	None:intergenic
CCGAAGGAATAGCCGGTGTA+TGG	0.486962	1.1:+69274180	None:intergenic
TTGAAGGCTGTAACTTTGGT+GGG	0.487577	1.1:-69273977	MS.gene041727:CDS
TTCTGTACAATCTGTGGCAA+GGG	0.495568	1.1:-69274593	MS.gene041727:CDS
GTTCAGTTGATCTCTACTGC+AGG	0.497725	1.1:-69274938	MS.gene041727:CDS
CTCCCTTCTGTTAGGAACTC+CGG	0.500730	1.1:-69274908	MS.gene041727:CDS
TTTGAAGGCTGTAACTTTGG+TGG	0.506070	1.1:-69273978	MS.gene041727:CDS
CAACTTGTGCCTGTTCCAAA+AGG	0.509708	1.1:+69274830	None:intergenic
TCTCTGGTGTCACATCGATC+AGG	0.512441	1.1:+69274131	None:intergenic
CCTCTTGATAAGCTTCGGTT+CGG	0.514238	1.1:+69274472	None:intergenic
GAAGGCTAATCCCGTTAAGT+TGG	0.516535	1.1:+69274852	None:intergenic
ACAAACACAAGTCCGTTGCT+TGG	0.519115	1.1:-69274884	MS.gene041727:CDS
GACGAAGAAGATATGGAAGA+GGG	0.519377	1.1:-69274689	MS.gene041727:CDS
TGTACCTAATAATTGTGAAA+TGG	0.520470	1.1:-69274747	MS.gene041727:CDS
AGACGAAGAAGATATGGAAG+AGG	0.521674	1.1:-69274690	MS.gene041727:CDS
CGAATGCACATGCGAGGCCA+TGG	0.526902	1.1:-69274548	MS.gene041727:CDS
AATCTTCAAATGGAGGTTGA+GGG	0.529470	1.1:+69273943	None:intergenic
AAGAGGTATTCGTGTCCCTA+TGG	0.530145	1.1:-69274455	MS.gene041727:CDS
GGTTGGTTGATTTCTTTGAA+AGG	0.533908	1.1:+69275202	None:intergenic
TTTGGAACAGGCACAAGTTG+TGG	0.534584	1.1:-69274827	MS.gene041727:CDS
TGTGTGCTAACAACTGGGCT+AGG	0.534923	1.1:-69275312	MS.gene041727:CDS
GAGGGTGAGAATCTTGCTCC+TGG	0.536278	1.1:-69274671	MS.gene041727:CDS
AGAAAAGATTCATCAGCTCC+AGG	0.538362	1.1:-69275068	MS.gene041727:CDS
GTCACATCGATCAGGTGGCT+CGG	0.538841	1.1:+69274139	None:intergenic
TCGGACCCAGTTTCTTTGTG+TGG	0.543092	1.1:+69274491	None:intergenic
TCAGTGATCTTAATATCATC+CGG	0.547189	1.1:+69275157	None:intergenic
CAACGGACTTGTGTTTGTAC+CGG	0.548811	1.1:+69274889	None:intergenic
TGGTCTTCCGAAGGAATAGC+CGG	0.552762	1.1:+69274173	None:intergenic
GTTTGTAACCCATTCCCAGT+GGG	0.558849	1.1:+69275274	None:intergenic
TTACGCTTGCAGCCACCATA+GGG	0.561037	1.1:+69274440	None:intergenic
CAGACTGAGTTCGAGATGGT+TGG	0.568725	1.1:+69275185	None:intergenic
TTACAGCCTTCAAAGTTCAA+AGG	0.572217	1.1:+69273987	None:intergenic
GTACCGGAGTTCCTAACAGA+AGG	0.573753	1.1:+69274905	None:intergenic
GATAAATGGCTTTGTTCATG+TGG	0.574687	1.1:-69274257	MS.gene041727:CDS
TTTCTGTACAATCTGTGGCA+AGG	0.576014	1.1:-69274594	MS.gene041727:CDS
GATCCTTTGTGGTCTTCCGA+AGG	0.576114	1.1:+69274164	None:intergenic
AACGAGTAAACTTCAAGACT+GGG	0.577049	1.1:-69275128	MS.gene041727:CDS
TTCAGTTGATCTCTACTGCA+GGG	0.580172	1.1:-69274937	MS.gene041727:CDS
TTGTGCCTGTTCCAAAAGGA+AGG	0.586342	1.1:+69274834	None:intergenic
CCTTCTGAATCTTCAAATGG+AGG	0.588246	1.1:+69273936	None:intergenic
CAAAACCACACAAAGAAACT+GGG	0.588364	1.1:-69274496	MS.gene041727:CDS
TGGTGGCTGCAAGCGTAACA+AGG	0.588657	1.1:-69274435	MS.gene041727:CDS
AATTATGCTCCTAAATCTGG+TGG	0.589400	1.1:-69273882	MS.gene041727:CDS
TTAGCACACAAGCTTCCAGT+TGG	0.591117	1.1:+69275325	None:intergenic
AGAGAAAACGGTGCTGTGGT+AGG	0.594886	1.1:-69274113	MS.gene041727:CDS
AAGCTTATTCAACATAACAC+TGG	0.596534	1.1:+69275102	None:intergenic
GATAGCATTATGGATGTGAA+AGG	0.598382	1.1:-69274041	MS.gene041727:CDS
ACACATAAAATAGTCTTCAG+AGG	0.602166	1.1:+69274395	None:intergenic
TTGTAACCCATTCCCAGTGG+GGG	0.606052	1.1:+69275276	None:intergenic
CCTCCATTTGAAGATTCAGA+AGG	0.608580	1.1:-69273936	MS.gene041727:CDS
AGGTATTCGTGTCCCTATGG+TGG	0.612960	1.1:-69274452	MS.gene041727:CDS
TGGCTAAGCTGTCCAAGCAA+CGG	0.613429	1.1:+69274872	None:intergenic
TGTAAAATCTCATATGAACC+AGG	0.616349	1.1:+69274653	None:intergenic
CACCAGAGAAAACGGTGCTG+TGG	0.617127	1.1:-69274117	MS.gene041727:CDS
CTGGTGTCACATCGATCAGG+TGG	0.620999	1.1:+69274134	None:intergenic
TACCGGAGTTCCTAACAGAA+GGG	0.630611	1.1:+69274906	None:intergenic
ACACATTTCTGTACAATCTG+TGG	0.631898	1.1:-69274599	MS.gene041727:CDS
TTTGTAACCCATTCCCAGTG+GGG	0.637498	1.1:+69275275	None:intergenic
ATCACAGACTGAGTTCGAGA+TGG	0.643055	1.1:+69275181	None:intergenic
AAGCTTGTGTGCTAACAACT+GGG	0.643592	1.1:-69275317	MS.gene041727:CDS
CGTTTGTAACCCATTCCCAG+TGG	0.646958	1.1:+69275273	None:intergenic
AATCTTCGAATGCACATGCG+AGG	0.648293	1.1:-69274554	MS.gene041727:CDS
TCATGAGAAACACTGTGGCA+AGG	0.649401	1.1:-69274279	MS.gene041727:CDS
TGACTGAAAACTTCTTCGTG+TGG	0.651786	1.1:+69274318	None:intergenic
CTGTGGCAAGGGTTTCAAGA+GGG	0.652480	1.1:-69274582	MS.gene041727:CDS
AGAAATGTGTGTGAGGTGCA+AGG	0.661202	1.1:+69274612	None:intergenic
CCGAACCGAAGCTTATCAAG+AGG	0.666381	1.1:-69274472	MS.gene041727:CDS
TCTGTGGCAAGGGTTTCAAG+AGG	0.676093	1.1:-69274583	MS.gene041727:CDS
TCTTGAGTCACAAGTTCACG+CGG	0.701065	1.1:+69274998	None:intergenic
AATGGTGCAAAACAATACTG+TGG	0.704627	1.1:-69274729	MS.gene041727:CDS
ATTCCTTCGGAAGACCACAA+AGG	0.713111	1.1:-69274167	MS.gene041727:CDS
ATTGTACAGAAATGTGTGTG+AGG	0.743882	1.1:+69274605	None:intergenic
AAAACTCATGAGAAACACTG+TGG	0.781827	1.1:-69274284	MS.gene041727:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAGGTGAGAAATAATTGAT+AGG	+	chr1.1:69275186-69275205	None:intergenic	25.0%
!	TGTACCTAATAATTGTGAAA+TGG	-	chr1.1:69274441-69274460	MS.gene041727:CDS	25.0%
!	TTTAATTATGCTCCTAAATC+TGG	-	chr1.1:69275303-69275322	MS.gene041727:CDS	25.0%
!!	GTTGAATAAGCTTTCATTTT+TGG	-	chr1.1:69274096-69274115	MS.gene041727:CDS	25.0%
	AAATGGATCTGATAGCATTA+TGG	-	chr1.1:69275137-69275156	MS.gene041727:CDS	30.0%
	AAGCTTATTCAACATAACAC+TGG	+	chr1.1:69274089-69274108	None:intergenic	30.0%
	ACACATAAAATAGTCTTCAG+AGG	+	chr1.1:69274796-69274815	None:intergenic	30.0%
	ACATAAAGACGAAGAAGATA+TGG	-	chr1.1:69274492-69274511	MS.gene041727:CDS	30.0%
	ATTAGGTACATCCTTATGAA+TGG	+	chr1.1:69274431-69274450	None:intergenic	30.0%
	TCAAATCCTTCAAGTGAAAA+TGG	-	chr1.1:69275120-69275139	MS.gene041727:CDS	30.0%
	TCAGTGATCTTAATATCATC+CGG	+	chr1.1:69274034-69274053	None:intergenic	30.0%
	TGATATTAAGATCACTGATC+AGG	-	chr1.1:69274036-69274055	MS.gene041727:CDS	30.0%
	TGCACCATTTCACAATTATT+AGG	+	chr1.1:69274448-69274467	None:intergenic	30.0%
	TGTAAAATCTCATATGAACC+AGG	+	chr1.1:69274538-69274557	None:intergenic	30.0%
	AAAACTCATGAGAAACACTG+TGG	-	chr1.1:69274904-69274923	MS.gene041727:CDS	35.0%
	AAACGAGTAAACTTCAAGAC+TGG	-	chr1.1:69274059-69274078	MS.gene041727:CDS	35.0%
	AACGAGTAAACTTCAAGACT+GGG	-	chr1.1:69274060-69274079	MS.gene041727:CDS	35.0%
	AATCTTCAAATGGAGGTTGA+GGG	+	chr1.1:69275248-69275267	None:intergenic	35.0%
	AATGGTGCAAAACAATACTG+TGG	-	chr1.1:69274459-69274478	MS.gene041727:CDS	35.0%
	AATTATGCTCCTAAATCTGG+TGG	-	chr1.1:69275306-69275325	MS.gene041727:CDS	35.0%
	ACACATTTCTGTACAATCTG+TGG	-	chr1.1:69274589-69274608	MS.gene041727:CDS	35.0%
	ATTGTACAGAAATGTGTGTG+AGG	+	chr1.1:69274586-69274605	None:intergenic	35.0%
	CAAAACCACACAAAGAAACT+GGG	-	chr1.1:69274692-69274711	MS.gene041727:CDS	35.0%
	GAATACCTCTTGATAAGCTT+CGG	+	chr1.1:69274724-69274743	None:intergenic	35.0%
	GATAGCATTATGGATGTGAA+AGG	-	chr1.1:69275147-69275166	MS.gene041727:CDS	35.0%
	TTACAGCCTTCAAAGTTCAA+AGG	+	chr1.1:69275204-69275223	None:intergenic	35.0%
	TTCTCACCTTTGAACTTTGA+AGG	-	chr1.1:69275195-69275214	MS.gene041727:CDS	35.0%
	TTTCGATCAGTCCATTCATA+AGG	-	chr1.1:69274417-69274436	MS.gene041727:CDS	35.0%
!	AACTTTGAAGGCTGTAACTT+TGG	-	chr1.1:69275207-69275226	MS.gene041727:CDS	35.0%
!	CTCTTTCTCTTTTCTCATGT+CGG	-	chr1.1:69275275-69275294	MS.gene041727:CDS	35.0%
!	GGTTGGTTGATTTCTTTGAA+AGG	+	chr1.1:69273989-69274008	None:intergenic	35.0%
!	TCAAGGAAAGACAAGCTTTT+CGG	-	chr1.1:69274964-69274983	MS.gene041727:CDS	35.0%
!	TCAGATCCATTTTCACTTGA+AGG	+	chr1.1:69275129-69275148	None:intergenic	35.0%
!	TCTTTCTCTTTTCTCATGTC+GGG	-	chr1.1:69275276-69275295	MS.gene041727:CDS	35.0%
!!	GATAAATGGCTTTGTTCATG+TGG	-	chr1.1:69274931-69274950	MS.gene041727:CDS	35.0%
!!	TTCTTTGTGTGGTTTTGCAA+GGG	+	chr1.1:69274689-69274708	None:intergenic	35.0%
!!	TTTCTTTGTGTGGTTTTGCA+AGG	+	chr1.1:69274690-69274709	None:intergenic	35.0%
!!!	GTAGTTGCACTGTTATTTTG+TGG	+	chr1.1:69274394-69274413	None:intergenic	35.0%
	AACACTGTGGCAAGGATAAA+TGG	-	chr1.1:69274917-69274936	MS.gene041727:CDS	40.0%
	AAGCTTGTGTGCTAACAACT+GGG	-	chr1.1:69273871-69273890	MS.gene041727:CDS	40.0%
	AATTCCCACCCTGTAAAAAG+GGG	+	chr1.1:69273960-69273979	None:intergenic	40.0%
	AGAAAAGATTCATCAGCTCC+AGG	-	chr1.1:69274120-69274139	MS.gene041727:CDS	40.0%
	AGACGAAGAAGATATGGAAG+AGG	-	chr1.1:69274498-69274517	MS.gene041727:CDS	40.0%
	CAATCAAATGCACAAGATCC+TGG	+	chr1.1:69274141-69274160	None:intergenic	40.0%
	CAATTCCCACCCTGTAAAAA+GGG	+	chr1.1:69273961-69273980	None:intergenic	40.0%
	CATGATTCACCACCAGATTT+AGG	+	chr1.1:69275318-69275337	None:intergenic	40.0%
	CCTCCATTTGAAGATTCAGA+AGG	-	chr1.1:69275252-69275271	MS.gene041727:CDS	40.0%
	CCTTCTGAATCTTCAAATGG+AGG	+	chr1.1:69275255-69275274	None:intergenic	40.0%
	GAATCTTCAAATGGAGGTTG+AGG	+	chr1.1:69275249-69275268	None:intergenic	40.0%
	GACGAAGAAGATATGGAAGA+GGG	-	chr1.1:69274499-69274518	MS.gene041727:CDS	40.0%
	GAGCCTTCTGAATCTTCAAA+TGG	+	chr1.1:69275258-69275277	None:intergenic	40.0%
	GCAAAACCACACAAAGAAAC+TGG	-	chr1.1:69274691-69274710	MS.gene041727:CDS	40.0%
	TCAATTCCCACCCTGTAAAA+AGG	+	chr1.1:69273962-69273981	None:intergenic	40.0%
	TGACTGAAAACTTCTTCGTG+TGG	+	chr1.1:69274873-69274892	None:intergenic	40.0%
	TTCAGTTGATCTCTACTGCA+GGG	-	chr1.1:69274251-69274270	MS.gene041727:CDS	40.0%
	TTCTGTACAATCTGTGGCAA+GGG	-	chr1.1:69274595-69274614	MS.gene041727:CDS	40.0%
	TTGAAGGCTGTAACTTTGGT+GGG	-	chr1.1:69275211-69275230	MS.gene041727:CDS	40.0%
	TTTCTGTACAATCTGTGGCA+AGG	-	chr1.1:69274594-69274613	MS.gene041727:CDS	40.0%
	TTTGAAGGCTGTAACTTTGG+TGG	-	chr1.1:69275210-69275229	MS.gene041727:CDS	40.0%
!	CACAGTGTGTTCTTTTGTAG+TGG	+	chr1.1:69274825-69274844	None:intergenic	40.0%
!	CACGAAGAAGTTTTCAGTCA+TGG	-	chr1.1:69274873-69274892	MS.gene041727:CDS	40.0%
!	CATGTGGCACAACATTTTCA+AGG	-	chr1.1:69274947-69274966	MS.gene041727:CDS	40.0%
!!	GAGTTTTGTACTCATCACCA+TGG	+	chr1.1:69274660-69274679	None:intergenic	40.0%
!!	GGAAGCATGAACTTCTGTTT+TGG	-	chr1.1:69275096-69275115	MS.gene041727:CDS	40.0%
!!!	ATTAGCCTTCCTTTTGGAAC+AGG	-	chr1.1:69274349-69274368	MS.gene041727:CDS	40.0%
	AATCTTCGAATGCACATGCG+AGG	-	chr1.1:69274634-69274653	MS.gene041727:CDS	45.0%
	ACAAACACAAGTCCGTTGCT+TGG	-	chr1.1:69274304-69274323	MS.gene041727:CDS	45.0%
	AGAAATGTGTGTGAGGTGCA+AGG	+	chr1.1:69274579-69274598	None:intergenic	45.0%
	AGTTCACGCGGTTGTTCAAA+AGG	+	chr1.1:69274181-69274200	None:intergenic	45.0%
	ATCACAGACTGAGTTCGAGA+TGG	+	chr1.1:69274010-69274029	None:intergenic	45.0%
	ATTCCTTCGGAAGACCACAA+AGG	-	chr1.1:69275021-69275040	MS.gene041727:CDS	45.0%
	CAACTTGTGCCTGTTCCAAA+AGG	+	chr1.1:69274361-69274380	None:intergenic	45.0%
	CCTCTTGATAAGCTTCGGTT+CGG	+	chr1.1:69274719-69274738	None:intergenic	45.0%
	CGATGTGACACCAGAGAAAA+CGG	-	chr1.1:69275063-69275082	MS.gene041727:CDS	45.0%
	GAAGCTTGTGTGCTAACAAC+TGG	-	chr1.1:69273870-69273889	MS.gene041727:CDS	45.0%
	GAAGGCTAATCCCGTTAAGT+TGG	+	chr1.1:69274339-69274358	None:intergenic	45.0%
	GACAGCTTAGCCAACTTAAC+GGG	-	chr1.1:69274326-69274345	MS.gene041727:CDS	45.0%
	GGACAGCTTAGCCAACTTAA+CGG	-	chr1.1:69274325-69274344	MS.gene041727:CDS	45.0%
	GTTCAGTTGATCTCTACTGC+AGG	-	chr1.1:69274250-69274269	MS.gene041727:CDS	45.0%
	GTTTGTAACCCATTCCCAGT+GGG	+	chr1.1:69273917-69273936	None:intergenic	45.0%
	TACCGGAGTTCCTAACAGAA+GGG	+	chr1.1:69274285-69274304	None:intergenic	45.0%
	TCATGAGAAACACTGTGGCA+AGG	-	chr1.1:69274909-69274928	MS.gene041727:CDS	45.0%
	TCGAACTCAGTCTGTGATTC+CGG	-	chr1.1:69274012-69274031	MS.gene041727:CDS	45.0%
	TCTTGAGTCACAAGTTCACG+CGG	+	chr1.1:69274193-69274212	None:intergenic	45.0%
	TTAGCACACAAGCTTCCAGT+TGG	+	chr1.1:69273866-69273885	None:intergenic	45.0%
	TTGTGCCTGTTCCAAAAGGA+AGG	+	chr1.1:69274357-69274376	None:intergenic	45.0%
	TTTGTAACCCATTCCCAGTG+GGG	+	chr1.1:69273916-69273935	None:intergenic	45.0%
!	CAACGGACTTGTGTTTGTAC+CGG	+	chr1.1:69274302-69274321	None:intergenic	45.0%
!	GTGTCCTTCCCCTTTTTACA+GGG	-	chr1.1:69273949-69273968	MS.gene041727:CDS	45.0%
!	TTTGGAACAGGCACAAGTTG+TGG	-	chr1.1:69274361-69274380	MS.gene041727:CDS	45.0%
!!	AAGAGGTATTCGTGTCCCTA+TGG	-	chr1.1:69274733-69274752	MS.gene041727:CDS	45.0%
!!!	AACGGGATTAGCCTTCCTTT+TGG	-	chr1.1:69274343-69274362	MS.gene041727:CDS	45.0%
	AGGTATTCGTGTCCCTATGG+TGG	-	chr1.1:69274736-69274755	MS.gene041727:CDS	50.0%
	CAGACTGAGTTCGAGATGGT+TGG	+	chr1.1:69274006-69274025	None:intergenic	50.0%
	CCGAACCGAAGCTTATCAAG+AGG	-	chr1.1:69274716-69274735	MS.gene041727:CDS	50.0%
	CGTTTGTAACCCATTCCCAG+TGG	+	chr1.1:69273918-69273937	None:intergenic	50.0%
	CTCCCTTCTGTTAGGAACTC+CGG	-	chr1.1:69274280-69274299	MS.gene041727:CDS	50.0%
	CTGTGGCAAGGGTTTCAAGA+GGG	-	chr1.1:69274606-69274625	MS.gene041727:CDS	50.0%
	GATCCTTTGTGGTCTTCCGA+AGG	+	chr1.1:69275027-69275046	None:intergenic	50.0%
	GGAGTCTTCTCCCTTCTGTT+AGG	-	chr1.1:69274272-69274291	MS.gene041727:CDS	50.0%
	GTAAAAAGGGGAAGGACACG+AGG	+	chr1.1:69273948-69273967	None:intergenic	50.0%
	GTACCGGAGTTCCTAACAGA+AGG	+	chr1.1:69274286-69274305	None:intergenic	50.0%
	TCGGACCCAGTTTCTTTGTG+TGG	+	chr1.1:69274700-69274719	None:intergenic	50.0%
	TCTGTGGCAAGGGTTTCAAG+AGG	-	chr1.1:69274605-69274624	MS.gene041727:CDS	50.0%
	TGGCTAAGCTGTCCAAGCAA+CGG	+	chr1.1:69274319-69274338	None:intergenic	50.0%
	TGGTCTTCCGAAGGAATAGC+CGG	+	chr1.1:69275018-69275037	None:intergenic	50.0%
	TGTGTGCTAACAACTGGGCT+AGG	-	chr1.1:69273876-69273895	MS.gene041727:CDS	50.0%
	TTACGCTTGCAGCCACCATA+GGG	+	chr1.1:69274751-69274770	None:intergenic	50.0%
	TTGTAACCCATTCCCAGTGG+GGG	+	chr1.1:69273915-69273934	None:intergenic	50.0%
!	CCATACACCGGCTATTCCTT+CGG	-	chr1.1:69275008-69275027	MS.gene041727:CDS	50.0%
!	CCTTCCCCTTTTTACAGGGT+GGG	-	chr1.1:69273953-69273972	MS.gene041727:CDS	50.0%
!	CCTTTTCCAAGGCCATACAC+CGG	-	chr1.1:69274996-69275015	MS.gene041727:CDS	50.0%
!	CGGTGTATGGCCTTGGAAAA+GGG	+	chr1.1:69274998-69275017	None:intergenic	50.0%
!	CGTGTCCTTCCCCTTTTTAC+AGG	-	chr1.1:69273948-69273967	MS.gene041727:CDS	50.0%
!	GGACACATTGCCCTTTTCCA+AGG	-	chr1.1:69274985-69275004	MS.gene041727:CDS	50.0%
!	TACCACAGCACCGTTTTCTC+TGG	+	chr1.1:69275076-69275095	None:intergenic	50.0%
!	TCCTTCCCCTTTTTACAGGG+TGG	-	chr1.1:69273952-69273971	MS.gene041727:CDS	50.0%
!!	AGAGAAAACGGTGCTGTGGT+AGG	-	chr1.1:69275075-69275094	MS.gene041727:CDS	50.0%
!!	TCTCTGGTGTCACATCGATC+AGG	+	chr1.1:69275060-69275079	None:intergenic	50.0%
	CCCACCCTGTAAAAAGGGGA+AGG	+	chr1.1:69273956-69273975	None:intergenic	55.0%
	CCGAAGGAATAGCCGGTGTA+TGG	+	chr1.1:69275011-69275030	None:intergenic	55.0%
	GAATAGCCGGTGTATGGCCT+TGG	+	chr1.1:69275005-69275024	None:intergenic	55.0%
	GAGGGTGAGAATCTTGCTCC+TGG	-	chr1.1:69274517-69274536	MS.gene041727:CDS	55.0%
	GTCACATCGATCAGGTGGCT+CGG	+	chr1.1:69275052-69275071	None:intergenic	55.0%
	GTTACGCTTGCAGCCACCAT+AGG	+	chr1.1:69274752-69274771	None:intergenic	55.0%
	TGGTGGCTGCAAGCGTAACA+AGG	-	chr1.1:69274753-69274772	MS.gene041727:CDS	55.0%
!	CACCAGAGAAAACGGTGCTG+TGG	-	chr1.1:69275071-69275090	MS.gene041727:CDS	55.0%
!	CCGGTGTATGGCCTTGGAAA+AGG	+	chr1.1:69274999-69275018	None:intergenic	55.0%
!!	CTGGTGTCACATCGATCAGG+TGG	+	chr1.1:69275057-69275076	None:intergenic	55.0%
!!	TGTGGTTTTGCAAGGGCTGC+TGG	+	chr1.1:69274682-69274701	None:intergenic	55.0%
	CGAATGCACATGCGAGGCCA+TGG	-	chr1.1:69274640-69274659	MS.gene041727:CDS	60.0%
!	CTGGGCTAGGTCCTCTTCCT+TGG	-	chr1.1:69273889-69273908	MS.gene041727:CDS	60.0%
!	GTGGCTCGGCAGATCCTTTG+TGG	+	chr1.1:69275038-69275057	None:intergenic	60.0%
	CCTCTTCCTTGGCCCCCACT+GGG	-	chr1.1:69273900-69273919	MS.gene041727:CDS	65.0%
	CCTTGGCCCCCACTGGGAAT+GGG	-	chr1.1:69273906-69273925	MS.gene041727:CDS	65.0%
	TCCTCTTCCTTGGCCCCCAC+TGG	-	chr1.1:69273899-69273918	MS.gene041727:CDS	65.0%
	TCCTTGGCCCCCACTGGGAA+TGG	-	chr1.1:69273905-69273924	MS.gene041727:CDS	65.0%
	CCCAGTGGGGGCCAAGGAAG+AGG	+	chr1.1:69273903-69273922	None:intergenic	70.0%
	CCCATTCCCAGTGGGGGCCA+AGG	+	chr1.1:69273909-69273928	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	69273857	69275353	69273857	ID=MS.gene041727
chr1.1	mRNA	69273857	69275353	69273857	ID=MS.gene041727.t1;Parent=MS.gene041727
chr1.1	exon	69273857	69275353	69273857	ID=MS.gene041727.t1.exon1;Parent=MS.gene041727.t1
chr1.1	CDS	69273857	69275353	69273857	ID=cds.MS.gene041727.t1;Parent=MS.gene041727.t1

Gene Sequence

>MS.gene041727

ATGAATCCAACTGGAAGCTTGTGTGCTAACAACTGGGCTAGGTCCTCTTCCTTGGCCCCCACTGGGAATGGGTTACAAACGAATTTGTCCTCGTGTCCTTCCCCTTTTTACAGGGTGGGAATTGAAACACCTTTCAAAGAAATCAACCAACCATCTCGAACTCAGTCTGTGATTCCGGATGATATTAAGATCACTGATCAGGAAACGAGTAAACTTCAAGACTGGGATTCCAGTGTTATGTTGAATAAGCTTTCATTTTTGGAAGAAAAGATTCATCAGCTCCAGGATCTTGTGCATTTGATTGATACTAAGAAGTGTCAACCTTTTGAACAACCGCGTGAACTTGTGACTCAAGAACAACAACTCATCACAGCTGATTTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGGAGTCTTCTCCCTTCTGTTAGGAACTCCGGTACAAACACAAGTCCGTTGCTTGGACAGCTTAGCCAACTTAACGGGATTAGCCTTCCTTTTGGAACAGGCACAAGTTGTGGTATTCAGCCACAAAATAACAGTGCAACTACATTTTTCGATCAGTCCATTCATAAGGATGTACCTAATAATTGTGAAATGGTGCAAAACAATACTGTGGAAGAACATGAACATAAAGACGAAGAAGATATGGAAGAGGGTGAGAATCTTGCTCCTGGTTCATATGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATCTGTGGCAAGGGTTTCAAGAGGGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAACCACACAAAGAAACTGGGTCCGAACCGAAGCTTATCAAGAGGTATTCGTGTCCCTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCACACGAAGAAGTTTTCAGTCATGGCAGATCTGAAAACTCATGAGAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCCCTTTTCCAAGGCCATACACCGGCTATTCCTTCGGAAGACCACAAAGGATCTGCCGAGCCACCTGATCGATGTGACACCAGAGAAAACGGTGCTGTGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGATCTGATAGCATTATGGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCACCTTTGAACTTTGAAGGCTGTAACTTTGGTGGGTTTAATGAATTCCCTCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGTCGGGTTCGTTTAATTATGCTCCTAAATCTGGTGGTGAATCATGTTCTGACAATCTGTAA

Protein sequence

>MS.gene041727.t1

MNPTGSLCANNWARSSSLAPTGNGLQTNLSSCPSPFYRVGIETPFKEINQPSRTQSVIPDDIKITDQETSKLQDWDSSVMLNKLSFLEEKIHQLQDLVHLIDTKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGSLLPSVRNSGTNTSPLLGQLSQLNGISLPFGTGTSCGIQPQNNSATTFFDQSIHKDVPNNCEMVQNNTVEEHEHKDEEDMEEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSEDHKGSAEPPDRCDTRENGAVVGSMNFCFGSNPSSENGSDSIMDVKGNIDDPINYFSPLNFEGCNFGGFNEFPQPPFEDSEGSFSFLMSGSFNYAPKSGGESCSDNL