AlfalfaGEDB | MS.gene006028

M. sativa cultivar XinJiangDaYe / MS.gene006028

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006028.t1	XP_024641404.1	87.3	503	59	2	1	498	1	503	8.40E-254	885.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006028.t1	Q9C8N5	53.7	514	202	8	1	496	1	496	4.8e-133	476.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006028.t1	A0A396JZF2	87.3	503	59	2	1	498	1	503	6.0e-254	885.9

TFs/TRs:

Gene ID	Type	Classification
MS.gene006028.t1	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene006028	MS.gene83538	PPI
MS.gene08082	MS.gene006028	PPI
MS.gene069594	MS.gene006028	PPI
MS.gene006028	MS.gene024691	PPI
MS.gene006028	MS.gene04398	PPI
MS.gene006028	MS.gene06078	PPI
MS.gene04096	MS.gene006028	PPI
MS.gene024690	MS.gene006028	PPI
MS.gene57326	MS.gene006028	PPI
MS.gene28044	MS.gene006028	PPI
MS.gene030841	MS.gene006028	PPI
MS.gene86407	MS.gene006028	PPI
MS.gene006028	MS.gene067410	PPI
MS.gene84543	MS.gene006028	PPI
MS.gene22302	MS.gene006028	PPI
MS.gene045142	MS.gene006028	PPI
MS.gene006028	MS.gene21670	PPI
MS.gene006028	MS.gene047652	PPI
MS.gene21669	MS.gene006028	PPI
MS.gene061812	MS.gene006028	PPI
MS.gene55805	MS.gene006028	PPI
MS.gene010379	MS.gene006028	PPI
MS.gene22301	MS.gene006028	PPI
MS.gene048934	MS.gene006028	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006028.t1	MTR_1g093095	41.447	152	83	6	239	387	107	255	2.28e-26	108
MS.gene006028.t1	MTR_1g112270	36.076	158	88	5	224	381	63	207	1.07e-24	107
MS.gene006028.t1	MTR_1g112270	35.762	151	85	4	231	381	58	196	2.00e-24	107
MS.gene006028.t1	MTR_4g059870	34.868	152	86	4	231	381	52	191	2.69e-24	106
MS.gene006028.t1	MTR_8g017210	34.731	167	92	5	219	381	61	214	6.67e-24	105
MS.gene006028.t1	MTR_2g099990	34.503	171	95	5	215	381	41	198	2.62e-23	103
MS.gene006028.t1	MTR_1g094115	33.775	151	88	4	231	381	61	199	6.73e-23	102
MS.gene006028.t1	MTR_2g093960	35.099	151	87	4	231	381	46	185	6.79e-23	101
MS.gene006028.t1	MTR_1g016010	35.099	151	87	3	231	381	55	194	3.04e-22	99.8
MS.gene006028.t1	MTR_2g099990	36.170	141	78	3	241	381	1	129	4.12e-21	95.9
MS.gene006028.t1	MTR_2g090745	31.765	170	101	4	215	381	2	159	6.50e-21	95.5
MS.gene006028.t1	MTR_1g094115	35.000	140	79	4	242	381	55	182	8.43e-21	95.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006028.t1	AT1G34370	55.253	514	194	7	1	496	1	496	5.40e-178	509
MS.gene006028.t1	AT1G34370	55.253	514	194	7	1	496	1	496	5.40e-178	509
MS.gene006028.t1	AT1G34370	71.181	288	75	3	214	496	2	286	2.78e-141	408
MS.gene006028.t1	AT5G22890	40.805	348	178	10	64	401	39	368	4.90e-75	241
MS.gene006028.t1	AT1G51220	37.423	163	92	5	228	387	160	315	8.96e-26	108
MS.gene006028.t1	AT1G34790	40.645	155	79	7	238	387	136	282	1.45e-25	107
MS.gene006028.t1	AT1G13290	39.535	172	91	8	220	386	76	239	2.92e-25	106
MS.gene006028.t1	AT3G20880	37.821	156	87	5	240	392	250	398	9.36e-25	106
MS.gene006028.t1	AT1G08290	40.000	150	81	5	241	387	175	318	1.68e-24	104
MS.gene006028.t1	AT3G45260	35.762	151	86	3	231	381	53	192	2.88e-24	105
MS.gene006028.t1	AT3G45260	35.762	151	86	3	231	381	53	192	2.88e-24	105
MS.gene006028.t1	AT5G44160	34.437	151	87	3	231	381	51	189	3.02e-24	105
MS.gene006028.t1	AT5G66730	34.437	151	87	3	231	381	46	184	3.88e-24	105
MS.gene006028.t1	AT5G44160	34.437	151	87	3	231	381	12	150	4.26e-24	105
MS.gene006028.t1	AT3G57670	33.498	203	119	6	215	409	181	375	5.20e-24	103
MS.gene006028.t1	AT1G03840	34.437	151	87	3	231	381	53	191	1.30e-23	104
MS.gene006028.t1	AT1G03840	34.437	151	87	3	231	381	55	193	1.31e-23	104
MS.gene006028.t1	AT5G60470	35.135	148	85	3	231	378	54	190	1.46e-23	103
MS.gene006028.t1	AT5G60470	35.135	148	85	3	231	378	58	194	1.47e-23	103
MS.gene006028.t1	AT5G60470	35.135	148	85	3	231	378	49	185	1.54e-23	103
MS.gene006028.t1	AT5G03150	35.294	153	84	4	231	381	67	206	2.00e-23	103
MS.gene006028.t1	AT1G14580	33.775	151	88	3	231	381	67	205	2.90e-23	102
MS.gene006028.t1	AT1G14580	33.775	151	88	3	231	381	67	205	2.90e-23	102
MS.gene006028.t1	AT1G14580	33.775	151	88	3	231	381	81	219	3.41e-23	102
MS.gene006028.t1	AT2G02080	33.775	151	88	3	231	381	68	206	6.27e-23	102
MS.gene006028.t1	AT2G02080	33.775	151	88	3	231	381	68	206	6.27e-23	102
MS.gene006028.t1	AT2G02080	33.775	151	88	3	231	381	68	206	6.27e-23	102
MS.gene006028.t1	AT2G02080	33.775	151	88	3	231	381	68	206	6.27e-23	102
MS.gene006028.t1	AT1G55110	33.775	151	89	3	231	381	77	216	6.33e-23	101
MS.gene006028.t1	AT1G55110	33.775	151	89	3	231	381	77	216	6.33e-23	101
MS.gene006028.t1	AT1G55110	33.775	151	89	3	231	381	77	216	6.33e-23	101
MS.gene006028.t1	AT3G50700	35.762	151	85	3	231	381	48	186	8.09e-23	101
MS.gene006028.t1	AT2G02070	33.113	151	89	3	231	381	66	204	1.10e-22	102
MS.gene006028.t1	AT2G02070	33.113	151	89	3	231	381	66	204	1.10e-22	102
MS.gene006028.t1	AT3G13810	35.220	159	91	4	223	381	64	210	1.35e-22	101
MS.gene006028.t1	AT3G13810	34.437	151	88	3	231	381	79	218	1.37e-22	101
MS.gene006028.t1	AT3G13810	34.437	151	88	3	231	381	84	223	1.53e-22	101
MS.gene006028.t1	AT3G13810	34.437	151	88	3	231	381	84	223	1.53e-22	101
MS.gene006028.t1	AT3G13810	35.220	159	91	4	223	381	78	224	1.53e-22	101
MS.gene006028.t1	AT3G13810	34.437	151	88	3	231	381	65	204	1.57e-22	100
MS.gene006028.t1	AT4G02670	35.099	151	87	3	231	381	69	208	1.61e-21	97.1
MS.gene006028.t1	AT4G02670	35.099	151	87	3	231	381	67	206	1.75e-21	97.1
MS.gene006028.t1	AT2G02080	34.752	141	80	3	241	381	1	129	8.43e-21	95.1
MS.gene006028.t1	AT2G02080	34.752	141	80	3	241	381	1	129	8.43e-21	95.1
MS.gene006028.t1	AT1G25250	33.333	159	95	5	221	378	14	162	9.72e-18	85.1
MS.gene006028.t1	AT1G68130	34.899	149	85	6	231	378	55	192	3.04e-17	84.3
MS.gene006028.t1	AT1G25250	34.228	149	87	5	231	378	47	185	3.95e-17	83.6
MS.gene006028.t1	AT2G01940	32.886	149	88	5	231	378	58	195	6.93e-17	83.6
MS.gene006028.t1	AT2G01940	32.847	137	80	5	231	366	58	183	3.04e-14	75.1

Find 116 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCAATTCCCACACTGTAAAA+AGG	0.196818	1.3:+66856352	None:intergenic
CATGATTCACCACCAGATTT+AGG	0.245532	1.3:+66854996	None:intergenic
TCAAATCCTTCAAGTGAAAA+TGG	0.258615	1.3:-66855191	MS.gene006028:CDS
TTTAATTATGCTCCTAAATC+TGG	0.266493	1.3:-66855008	MS.gene006028:CDS
TGCACCAATTCACAATTATT+AGG	0.289796	1.3:+66855866	None:intergenic
AACTTTGAAGGCTGTAACTT+TGG	0.299493	1.3:-66855104	MS.gene006028:CDS
TCCTTGGCTCCCACTGGGAA+TGG	0.315241	1.3:-66856406	MS.gene006028:CDS
AACACTGTGGCAAGGATAAA+TGG	0.316031	1.3:-66855394	MS.gene006028:CDS
GCAAAACCACACAAAGAAAC+TGG	0.316849	1.3:-66855620	MS.gene006028:CDS
TCGAACTCAGTCTGTGATTC+CGG	0.317053	1.3:-66856299	MS.gene006028:CDS
GGAAGCATGAACTTCTGTTT+TGG	0.324815	1.3:-66855215	MS.gene006028:CDS
TCCTCTTCCTTGGCTCCCAC+TGG	0.331174	1.3:-66856412	MS.gene006028:CDS
AACGGGATTAGCCTTCCTTT+TGG	0.342253	1.3:-66855968	MS.gene006028:CDS
CCATACACCGGCTATTCCTT+TGG	0.353696	1.3:-66855303	MS.gene006028:CDS
TTCTCACCTTTGAACTTTGA+AGG	0.355262	1.3:-66855116	MS.gene006028:CDS
GGAGTCTTCTCCCTTCTGTT+AGG	0.361673	1.3:-66856039	MS.gene006028:CDS
CCTTGGCTCCCACTGGGAAT+GGG	0.390829	1.3:-66856405	MS.gene006028:CDS
GTTACAAACGAATTTGTCTT+CGG	0.402471	1.3:-66856383	MS.gene006028:CDS
GAAGCTTGTGTGCTAACAAC+TGG	0.402631	1.3:-66856441	MS.gene006028:CDS
CTGGGCTAGGTCCTCTTCCT+TGG	0.412335	1.3:-66856422	MS.gene006028:CDS
GACAGCTTAGCCAACTTAAC+GGG	0.414271	1.3:-66855985	MS.gene006028:CDS
TGAATCTTCAAACGGAGGTT+GGG	0.420262	1.3:+66855064	None:intergenic
CTGAATCTTCAAACGGAGGT+TGG	0.420596	1.3:+66855063	None:intergenic
TTACAAACGAATTTGTCTTC+GGG	0.425788	1.3:-66856382	MS.gene006028:CDS
GAATAGCCGGTGTATGGCCT+TGG	0.431520	1.3:+66855309	None:intergenic
AGTTCACGCGGTTGTTCAAA+AGG	0.437372	1.3:+66856133	None:intergenic
AAATGGAGCTGATAGCATTA+TGG	0.446519	1.3:-66855174	MS.gene006028:CDS
AAATGAGTAAACTTCAAGAC+TGG	0.451293	1.3:-66856252	MS.gene006028:CDS
ACATAAAGACGAAGAAGATA+TGG	0.453200	1.3:-66855819	MS.gene006028:CDS
GTGGCTCGGCAGATCCTTTG+TGG	0.455339	1.3:+66855276	None:intergenic
CAATCAAATGCACAAGATCC+TGG	0.464133	1.3:+66856173	None:intergenic
TGATATTAAGATCACTGATC+AGG	0.471924	1.3:-66856275	MS.gene006028:CDS
GTTACGCTTGCAGCCACCAT+AGG	0.472872	1.3:+66855562	None:intergenic
TTGAAGGCTGTAACTTTGGC+GGG	0.475842	1.3:-66855100	MS.gene006028:CDS
AAGTTTGAAATGAATCCAAC+TGG	0.479394	1.3:-66856463	None:intergenic
GGACAGCTTAGCCAACTTAA+CGG	0.484196	1.3:-66855986	MS.gene006028:CDS
CGATGTGACACCAGAGAAAA+CGG	0.484392	1.3:-66855248	MS.gene006028:CDS
GAATACCTCTTGATAAGCTT+CGG	0.485383	1.3:+66855590	None:intergenic
AAAGGTGAGAAATAATTGAT+AGG	0.486126	1.3:+66855128	None:intergenic
CCAAAGGAATAGCCGGTGTA+TGG	0.488982	1.3:+66855303	None:intergenic
ATTAGGTACATCCTTCTGAA+TGG	0.490088	1.3:+66855883	None:intergenic
TGTACCTAATAATTGTGAAT+TGG	0.493814	1.3:-66855870	MS.gene006028:CDS
TTCTGTACAATCTGTGGCAA+GGG	0.495568	1.3:-66855716	MS.gene006028:CDS
GTTCAGTTGATCTCTACTGC+AGG	0.497725	1.3:-66856061	MS.gene006028:CDS
CTCCCTTCTGTTAGGAACTC+CGG	0.500730	1.3:-66856031	MS.gene006028:CDS
CCTCTTCCTTGGCTCCCACT+GGG	0.502672	1.3:-66856411	MS.gene006028:CDS
TTTGAAGGCTGTAACTTTGG+CGG	0.506735	1.3:-66855101	MS.gene006028:CDS
CAACTTGTGCCTGTTCCAAA+AGG	0.509708	1.3:+66855953	None:intergenic
TCTCTGGTGTCACATCGATC+AGG	0.512441	1.3:+66855254	None:intergenic
CCTCTTGATAAGCTTCGGTT+CGG	0.514238	1.3:+66855595	None:intergenic
GAAGGCTAATCCCGTTAAGT+TGG	0.516535	1.3:+66855975	None:intergenic
ACAAACACAAGTCCGTTGCT+TGG	0.519115	1.3:-66856007	MS.gene006028:CDS
GACGAAGAAGATATGGAAGA+GGG	0.519377	1.3:-66855812	MS.gene006028:CDS
AGACGAAGAAGATATGGAAG+AGG	0.521674	1.3:-66855813	MS.gene006028:CDS
CGAATGCACATGCGAGGCCA+TGG	0.526902	1.3:-66855671	MS.gene006028:CDS
GAGCCTTCTGAATCTTCAAA+CGG	0.528176	1.3:+66855056	None:intergenic
AAGAGGTATTCGTGTCCCTA+TGG	0.530145	1.3:-66855578	MS.gene006028:CDS
GGTTGGTTGATTTCTTTGAA+AGG	0.533908	1.3:+66856325	None:intergenic
TTTGGAACAGGCACAAGTTG+TGG	0.534584	1.3:-66855950	MS.gene006028:CDS
TGTGTGCTAACAACTGGGCT+AGG	0.534923	1.3:-66856435	MS.gene006028:CDS
CCCATTCCCAGTGGGAGCCA+AGG	0.535284	1.3:+66856405	None:intergenic
AGAAAAGATTCATCAGCTCC+AGG	0.538362	1.3:-66856191	MS.gene006028:CDS
GTCACATCGATCAGGTGGCT+CGG	0.538841	1.3:+66855262	None:intergenic
TCGGACCCAGTTTCTTTGTG+TGG	0.543092	1.3:+66855614	None:intergenic
TTTCGATCAGTCCATTCAGA+AGG	0.546357	1.3:-66855894	MS.gene006028:CDS
TCAGTGATCTTAATATCATC+CGG	0.547189	1.3:+66856280	None:intergenic
CAACGGACTTGTGTTTGTAC+CGG	0.548811	1.3:+66856012	None:intergenic
CCCAGTGGGAGCCAAGGAAG+AGG	0.551638	1.3:+66856411	None:intergenic
TGGTCTTCCAAAGGAATAGC+CGG	0.552157	1.3:+66855296	None:intergenic
TGTAAAATCTCATATGAACC+AGG	0.558641	1.3:+66855776	None:intergenic
TTACGCTTGCAGCCACCATA+GGG	0.561037	1.3:+66855563	None:intergenic
CAGACTGAGTTCGAGATGGT+TGG	0.568725	1.3:+66856308	None:intergenic
TTACAGCCTTCAAAGTTCAA+AGG	0.572217	1.3:+66855110	None:intergenic
GTACCGGAGTTCCTAACAGA+AGG	0.573753	1.3:+66856028	None:intergenic
GATAAATGGCTTTGTTCATG+TGG	0.574687	1.3:-66855380	MS.gene006028:CDS
GATCCTTTGTGGTCTTCCAA+AGG	0.575837	1.3:+66855287	None:intergenic
GAGGGTGAGAATCTTGCCCC+TGG	0.576001	1.3:-66855794	MS.gene006028:CDS
TTTCTGTACAATCTGTGGCA+AGG	0.576014	1.3:-66855717	MS.gene006028:CDS
TTCAGTTGATCTCTACTGCA+GGG	0.580172	1.3:-66856060	MS.gene006028:CDS
TTGTGCCTGTTCCAAAAGGA+AGG	0.586342	1.3:+66855957	None:intergenic
CAAAACCACACAAAGAAACT+GGG	0.588364	1.3:-66855619	MS.gene006028:CDS
TGGTGGCTGCAAGCGTAACA+AGG	0.588657	1.3:-66855558	MS.gene006028:CDS
AATTATGCTCCTAAATCTGG+TGG	0.589400	1.3:-66855005	MS.gene006028:CDS
TTAGCACACAAGCTTCCAGT+TGG	0.591117	1.3:+66856448	None:intergenic
AGAGAAAACGGTGCTGTGGT+AGG	0.594886	1.3:-66855236	MS.gene006028:CDS
AATGAGTAAACTTCAAGACT+GGG	0.596306	1.3:-66856251	MS.gene006028:CDS
AAGCTTATTCAACATAACAC+TGG	0.596534	1.3:+66856225	None:intergenic
GATAGCATTATGGATGTGAA+AGG	0.598382	1.3:-66855164	MS.gene006028:CDS
ACACATAAAATAGTCTTCAG+AGG	0.602166	1.3:+66855518	None:intergenic
GTAAAATCTCATATGAACCA+GGG	0.607636	1.3:+66855777	None:intergenic
CCTCCGTTTGAAGATTCAGA+AGG	0.608990	1.3:-66855059	MS.gene006028:CDS
AGGTATTCGTGTCCCTATGG+TGG	0.612960	1.3:-66855575	MS.gene006028:CDS
TGGCTAAGCTGTCCAAGCAA+CGG	0.613429	1.3:+66855995	None:intergenic
CACCAGAGAAAACGGTGCTG+TGG	0.617127	1.3:-66855240	MS.gene006028:CDS
CTGGTGTCACATCGATCAGG+TGG	0.620999	1.3:+66855257	None:intergenic
CATGTTCTGACAATCTGTAA+CGG	0.621637	1.3:-66854977	None:intergenic
TACCGGAGTTCCTAACAGAA+GGG	0.630611	1.3:+66856029	None:intergenic
ACACATTTCTGTACAATCTG+TGG	0.631898	1.3:-66855722	MS.gene006028:CDS
GTTTGTAACCCATTCCCAGT+GGG	0.634474	1.3:+66856397	None:intergenic
ATCACAGACTGAGTTCGAGA+TGG	0.643055	1.3:+66856304	None:intergenic
AAGCTTGTGTGCTAACAACT+GGG	0.643592	1.3:-66856440	MS.gene006028:CDS
CCTTCTGAATCTTCAAACGG+AGG	0.643624	1.3:+66855059	None:intergenic
AATCTTCGAATGCACATGCG+AGG	0.648293	1.3:-66855677	MS.gene006028:CDS
TCATGAGAAACACTGTGGCA+AGG	0.649401	1.3:-66855402	MS.gene006028:CDS
TAAAATCTCATATGAACCAG+GGG	0.650754	1.3:+66855778	None:intergenic
TGACTGAAAACTTCTTCGTG+TGG	0.651786	1.3:+66855441	None:intergenic
CTGTGGCAAGGGTTTCAAGA+GGG	0.652480	1.3:-66855705	MS.gene006028:CDS
AGAAATGTGTGTGAGGTGCA+AGG	0.661202	1.3:+66855735	None:intergenic
CCGAACCGAAGCTTATCAAG+AGG	0.666381	1.3:-66855595	MS.gene006028:CDS
CGTTTGTAACCCATTCCCAG+TGG	0.669352	1.3:+66856396	None:intergenic
TCTGTGGCAAGGGTTTCAAG+AGG	0.676093	1.3:-66855706	MS.gene006028:CDS
ATTCCTTTGGAAGACCACAA+AGG	0.685978	1.3:-66855290	MS.gene006028:CDS
TCTTGAGTCACAAGTTCACG+CGG	0.701065	1.3:+66856121	None:intergenic
ATTGGTGCAAAACAATACTG+TGG	0.704627	1.3:-66855852	MS.gene006028:CDS
ATTGTACAGAAATGTGTGTG+AGG	0.743882	1.3:+66855728	None:intergenic
AAAACTCATGAGAAACACTG+TGG	0.781827	1.3:-66855407	MS.gene006028:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAGGTGAGAAATAATTGAT+AGG	+	chr1.3:66856309-66856328	None:intergenic	25.0%
!	TGTACCTAATAATTGTGAAT+TGG	-	chr1.3:66855564-66855583	MS.gene006028:CDS	25.0%
!	TTTAATTATGCTCCTAAATC+TGG	-	chr1.3:66856426-66856445	MS.gene006028:CDS	25.0%
!!	GTTGAATAAGCTTTCATTTT+TGG	-	chr1.3:66855219-66855238	MS.gene006028:CDS	25.0%
	AAATGAGTAAACTTCAAGAC+TGG	-	chr1.3:66855182-66855201	MS.gene006028:CDS	30.0%
	AAGCTTATTCAACATAACAC+TGG	+	chr1.3:66855212-66855231	None:intergenic	30.0%
	AATGAGTAAACTTCAAGACT+GGG	-	chr1.3:66855183-66855202	MS.gene006028:CDS	30.0%
	ACACATAAAATAGTCTTCAG+AGG	+	chr1.3:66855919-66855938	None:intergenic	30.0%
	ACATAAAGACGAAGAAGATA+TGG	-	chr1.3:66855615-66855634	MS.gene006028:CDS	30.0%
	GTAAAATCTCATATGAACCA+GGG	+	chr1.3:66855660-66855679	None:intergenic	30.0%
	GTTACAAACGAATTTGTCTT+CGG	-	chr1.3:66855051-66855070	MS.gene006028:CDS	30.0%
	TAAAATCTCATATGAACCAG+GGG	+	chr1.3:66855659-66855678	None:intergenic	30.0%
	TCAAATCCTTCAAGTGAAAA+TGG	-	chr1.3:66856243-66856262	MS.gene006028:CDS	30.0%
	TCAGTGATCTTAATATCATC+CGG	+	chr1.3:66855157-66855176	None:intergenic	30.0%
	TGATATTAAGATCACTGATC+AGG	-	chr1.3:66855159-66855178	MS.gene006028:CDS	30.0%
	TGCACCAATTCACAATTATT+AGG	+	chr1.3:66855571-66855590	None:intergenic	30.0%
	TGTAAAATCTCATATGAACC+AGG	+	chr1.3:66855661-66855680	None:intergenic	30.0%
	TTACAAACGAATTTGTCTTC+GGG	-	chr1.3:66855052-66855071	MS.gene006028:CDS	30.0%
	AAAACTCATGAGAAACACTG+TGG	-	chr1.3:66856027-66856046	MS.gene006028:CDS	35.0%
	AAATGGAGCTGATAGCATTA+TGG	-	chr1.3:66856260-66856279	MS.gene006028:CDS	35.0%
	AATTATGCTCCTAAATCTGG+TGG	-	chr1.3:66856429-66856448	MS.gene006028:CDS	35.0%
	AATTCCCACACTGTAAAAAG+GGG	+	chr1.3:66855083-66855102	None:intergenic	35.0%
	ACACATTTCTGTACAATCTG+TGG	-	chr1.3:66855712-66855731	MS.gene006028:CDS	35.0%
	ATTAGGTACATCCTTCTGAA+TGG	+	chr1.3:66855554-66855573	None:intergenic	35.0%
	ATTGGTGCAAAACAATACTG+TGG	-	chr1.3:66855582-66855601	MS.gene006028:CDS	35.0%
	ATTGTACAGAAATGTGTGTG+AGG	+	chr1.3:66855709-66855728	None:intergenic	35.0%
	CAAAACCACACAAAGAAACT+GGG	-	chr1.3:66855815-66855834	MS.gene006028:CDS	35.0%
	CAATTCCCACACTGTAAAAA+GGG	+	chr1.3:66855084-66855103	None:intergenic	35.0%
	GAATACCTCTTGATAAGCTT+CGG	+	chr1.3:66855847-66855866	None:intergenic	35.0%
	GATAGCATTATGGATGTGAA+AGG	-	chr1.3:66856270-66856289	MS.gene006028:CDS	35.0%
	TCAATTCCCACACTGTAAAA+AGG	+	chr1.3:66855085-66855104	None:intergenic	35.0%
	TTACAGCCTTCAAAGTTCAA+AGG	+	chr1.3:66856327-66856346	None:intergenic	35.0%
	TTCTCACCTTTGAACTTTGA+AGG	-	chr1.3:66856318-66856337	MS.gene006028:CDS	35.0%
!	AACTTTGAAGGCTGTAACTT+TGG	-	chr1.3:66856330-66856349	MS.gene006028:CDS	35.0%
!	CTCTTTCTCTTTTCTCATGT+CGG	-	chr1.3:66856398-66856417	MS.gene006028:CDS	35.0%
!	GGTTGGTTGATTTCTTTGAA+AGG	+	chr1.3:66855112-66855131	None:intergenic	35.0%
!	TCAAGGAAAGACAAGCTTTT+CGG	-	chr1.3:66856087-66856106	MS.gene006028:CDS	35.0%
!	TCTTTCTCTTTTCTCATGTC+GGG	-	chr1.3:66856399-66856418	MS.gene006028:CDS	35.0%
!!	GATAAATGGCTTTGTTCATG+TGG	-	chr1.3:66856054-66856073	MS.gene006028:CDS	35.0%
!!	TTCTTTGTGTGGTTTTGCAA+GGG	+	chr1.3:66855812-66855831	None:intergenic	35.0%
!!	TTTCTTTGTGTGGTTTTGCA+AGG	+	chr1.3:66855813-66855832	None:intergenic	35.0%
!!!	GTAGTTGCACTGTTATTTTG+TGG	+	chr1.3:66855517-66855536	None:intergenic	35.0%
	AACACTGTGGCAAGGATAAA+TGG	-	chr1.3:66856040-66856059	MS.gene006028:CDS	40.0%
	AAGCTTGTGTGCTAACAACT+GGG	-	chr1.3:66854994-66855013	MS.gene006028:CDS	40.0%
	AGAAAAGATTCATCAGCTCC+AGG	-	chr1.3:66855243-66855262	MS.gene006028:CDS	40.0%
	AGACGAAGAAGATATGGAAG+AGG	-	chr1.3:66855621-66855640	MS.gene006028:CDS	40.0%
	CAATCAAATGCACAAGATCC+TGG	+	chr1.3:66855264-66855283	None:intergenic	40.0%
	CATGATTCACCACCAGATTT+AGG	+	chr1.3:66856441-66856460	None:intergenic	40.0%
	GACGAAGAAGATATGGAAGA+GGG	-	chr1.3:66855622-66855641	MS.gene006028:CDS	40.0%
	GAGCCTTCTGAATCTTCAAA+CGG	+	chr1.3:66856381-66856400	None:intergenic	40.0%
	GCAAAACCACACAAAGAAAC+TGG	-	chr1.3:66855814-66855833	MS.gene006028:CDS	40.0%
	TGAATCTTCAAACGGAGGTT+GGG	+	chr1.3:66856373-66856392	None:intergenic	40.0%
	TGACTGAAAACTTCTTCGTG+TGG	+	chr1.3:66855996-66856015	None:intergenic	40.0%
	TTCAGTTGATCTCTACTGCA+GGG	-	chr1.3:66855374-66855393	MS.gene006028:CDS	40.0%
	TTCTGTACAATCTGTGGCAA+GGG	-	chr1.3:66855718-66855737	MS.gene006028:CDS	40.0%
	TTTCGATCAGTCCATTCAGA+AGG	-	chr1.3:66855540-66855559	MS.gene006028:CDS	40.0%
	TTTCTGTACAATCTGTGGCA+AGG	-	chr1.3:66855717-66855736	MS.gene006028:CDS	40.0%
	TTTGAAGGCTGTAACTTTGG+CGG	-	chr1.3:66856333-66856352	MS.gene006028:CDS	40.0%
!	ATTCCTTTGGAAGACCACAA+AGG	-	chr1.3:66856144-66856163	MS.gene006028:CDS	40.0%
!	CACAGTGTGTTCTTTTGTAG+TGG	+	chr1.3:66855948-66855967	None:intergenic	40.0%
!	CACGAAGAAGTTTTCAGTCA+TGG	-	chr1.3:66855996-66856015	MS.gene006028:CDS	40.0%
!	CATGTGGCACAACATTTTCA+AGG	-	chr1.3:66856070-66856089	MS.gene006028:CDS	40.0%
!	TCAGCTCCATTTTCACTTGA+AGG	+	chr1.3:66856252-66856271	None:intergenic	40.0%
!!	GAGTTTTGTACTCATCACCA+TGG	+	chr1.3:66855783-66855802	None:intergenic	40.0%
!!	GGAAGCATGAACTTCTGTTT+TGG	-	chr1.3:66856219-66856238	MS.gene006028:CDS	40.0%
!!!	ATTAGCCTTCCTTTTGGAAC+AGG	-	chr1.3:66855472-66855491	MS.gene006028:CDS	40.0%
	AATCTTCGAATGCACATGCG+AGG	-	chr1.3:66855757-66855776	MS.gene006028:CDS	45.0%
	ACAAACACAAGTCCGTTGCT+TGG	-	chr1.3:66855427-66855446	MS.gene006028:CDS	45.0%
	AGAAATGTGTGTGAGGTGCA+AGG	+	chr1.3:66855702-66855721	None:intergenic	45.0%
	AGTTCACGCGGTTGTTCAAA+AGG	+	chr1.3:66855304-66855323	None:intergenic	45.0%
	ATCACAGACTGAGTTCGAGA+TGG	+	chr1.3:66855133-66855152	None:intergenic	45.0%
	CAACTTGTGCCTGTTCCAAA+AGG	+	chr1.3:66855484-66855503	None:intergenic	45.0%
	CCTCCGTTTGAAGATTCAGA+AGG	-	chr1.3:66856375-66856394	MS.gene006028:CDS	45.0%
	CCTCTTGATAAGCTTCGGTT+CGG	+	chr1.3:66855842-66855861	None:intergenic	45.0%
	CCTTCTGAATCTTCAAACGG+AGG	+	chr1.3:66856378-66856397	None:intergenic	45.0%
	CGATGTGACACCAGAGAAAA+CGG	-	chr1.3:66856186-66856205	MS.gene006028:CDS	45.0%
	CTGAATCTTCAAACGGAGGT+TGG	+	chr1.3:66856374-66856393	None:intergenic	45.0%
	GAAGCTTGTGTGCTAACAAC+TGG	-	chr1.3:66854993-66855012	MS.gene006028:CDS	45.0%
	GAAGGCTAATCCCGTTAAGT+TGG	+	chr1.3:66855462-66855481	None:intergenic	45.0%
	GACAGCTTAGCCAACTTAAC+GGG	-	chr1.3:66855449-66855468	MS.gene006028:CDS	45.0%
	GATCCTTTGTGGTCTTCCAA+AGG	+	chr1.3:66856150-66856169	None:intergenic	45.0%
	GGACAGCTTAGCCAACTTAA+CGG	-	chr1.3:66855448-66855467	MS.gene006028:CDS	45.0%
	GTTCAGTTGATCTCTACTGC+AGG	-	chr1.3:66855373-66855392	MS.gene006028:CDS	45.0%
	GTTTGTAACCCATTCCCAGT+GGG	+	chr1.3:66855040-66855059	None:intergenic	45.0%
	TACCGGAGTTCCTAACAGAA+GGG	+	chr1.3:66855408-66855427	None:intergenic	45.0%
	TCATGAGAAACACTGTGGCA+AGG	-	chr1.3:66856032-66856051	MS.gene006028:CDS	45.0%
	TCGAACTCAGTCTGTGATTC+CGG	-	chr1.3:66855135-66855154	MS.gene006028:CDS	45.0%
	TCTTGAGTCACAAGTTCACG+CGG	+	chr1.3:66855316-66855335	None:intergenic	45.0%
	TGGTCTTCCAAAGGAATAGC+CGG	+	chr1.3:66856141-66856160	None:intergenic	45.0%
	TTAGCACACAAGCTTCCAGT+TGG	+	chr1.3:66854989-66855008	None:intergenic	45.0%
	TTGAAGGCTGTAACTTTGGC+GGG	-	chr1.3:66856334-66856353	MS.gene006028:CDS	45.0%
	TTGTGCCTGTTCCAAAAGGA+AGG	+	chr1.3:66855480-66855499	None:intergenic	45.0%
!	CAACGGACTTGTGTTTGTAC+CGG	+	chr1.3:66855425-66855444	None:intergenic	45.0%
!	CCTTCCCCTTTTTACAGTGT+GGG	-	chr1.3:66855076-66855095	MS.gene006028:CDS	45.0%
!	GGACACATTGCTCTTTTCCA+AGG	-	chr1.3:66856108-66856127	MS.gene006028:CDS	45.0%
!	TCCTTCCCCTTTTTACAGTG+TGG	-	chr1.3:66855075-66855094	MS.gene006028:CDS	45.0%
!	TCTTTTCCAAGGCCATACAC+CGG	-	chr1.3:66856119-66856138	MS.gene006028:CDS	45.0%
!	TTTGGAACAGGCACAAGTTG+TGG	-	chr1.3:66855484-66855503	MS.gene006028:CDS	45.0%
!!	AAGAGGTATTCGTGTCCCTA+TGG	-	chr1.3:66855856-66855875	MS.gene006028:CDS	45.0%
!!!	AACGGGATTAGCCTTCCTTT+TGG	-	chr1.3:66855466-66855485	MS.gene006028:CDS	45.0%
	AGGTATTCGTGTCCCTATGG+TGG	-	chr1.3:66855859-66855878	MS.gene006028:CDS	50.0%
	CAGACTGAGTTCGAGATGGT+TGG	+	chr1.3:66855129-66855148	None:intergenic	50.0%
	CCAAAGGAATAGCCGGTGTA+TGG	+	chr1.3:66856134-66856153	None:intergenic	50.0%
	CCCACACTGTAAAAAGGGGA+AGG	+	chr1.3:66855079-66855098	None:intergenic	50.0%
	CCGAACCGAAGCTTATCAAG+AGG	-	chr1.3:66855839-66855858	MS.gene006028:CDS	50.0%
	CGTTTGTAACCCATTCCCAG+TGG	+	chr1.3:66855041-66855060	None:intergenic	50.0%
	CTCCCTTCTGTTAGGAACTC+CGG	-	chr1.3:66855403-66855422	MS.gene006028:CDS	50.0%
	CTGTGGCAAGGGTTTCAAGA+GGG	-	chr1.3:66855729-66855748	MS.gene006028:CDS	50.0%
	GGAGTCTTCTCCCTTCTGTT+AGG	-	chr1.3:66855395-66855414	MS.gene006028:CDS	50.0%
	GTACCGGAGTTCCTAACAGA+AGG	+	chr1.3:66855409-66855428	None:intergenic	50.0%
	TCGGACCCAGTTTCTTTGTG+TGG	+	chr1.3:66855823-66855842	None:intergenic	50.0%
	TCTGTGGCAAGGGTTTCAAG+AGG	-	chr1.3:66855728-66855747	MS.gene006028:CDS	50.0%
	TGGCTAAGCTGTCCAAGCAA+CGG	+	chr1.3:66855442-66855461	None:intergenic	50.0%
	TGTGTGCTAACAACTGGGCT+AGG	-	chr1.3:66854999-66855018	MS.gene006028:CDS	50.0%
	TTACGCTTGCAGCCACCATA+GGG	+	chr1.3:66855874-66855893	None:intergenic	50.0%
!	CCATACACCGGCTATTCCTT+TGG	-	chr1.3:66856131-66856150	MS.gene006028:CDS	50.0%
!	TACCACAGCACCGTTTTCTC+TGG	+	chr1.3:66856199-66856218	None:intergenic	50.0%
!!	AGAGAAAACGGTGCTGTGGT+AGG	-	chr1.3:66856198-66856217	MS.gene006028:CDS	50.0%
!!	TCTCTGGTGTCACATCGATC+AGG	+	chr1.3:66856183-66856202	None:intergenic	50.0%
	GAATAGCCGGTGTATGGCCT+TGG	+	chr1.3:66856128-66856147	None:intergenic	55.0%
	GTCACATCGATCAGGTGGCT+CGG	+	chr1.3:66856175-66856194	None:intergenic	55.0%
	GTTACGCTTGCAGCCACCAT+AGG	+	chr1.3:66855875-66855894	None:intergenic	55.0%
	TGGTGGCTGCAAGCGTAACA+AGG	-	chr1.3:66855876-66855895	MS.gene006028:CDS	55.0%
!	CACCAGAGAAAACGGTGCTG+TGG	-	chr1.3:66856194-66856213	MS.gene006028:CDS	55.0%
!!	CTGGTGTCACATCGATCAGG+TGG	+	chr1.3:66856180-66856199	None:intergenic	55.0%
!!	TGTGGTTTTGCAAGGGCTGC+TGG	+	chr1.3:66855805-66855824	None:intergenic	55.0%
	CCTCTTCCTTGGCTCCCACT+GGG	-	chr1.3:66855023-66855042	MS.gene006028:CDS	60.0%
	CCTTGGCTCCCACTGGGAAT+GGG	-	chr1.3:66855029-66855048	MS.gene006028:CDS	60.0%
	CGAATGCACATGCGAGGCCA+TGG	-	chr1.3:66855763-66855782	MS.gene006028:CDS	60.0%
	GAGGGTGAGAATCTTGCCCC+TGG	-	chr1.3:66855640-66855659	MS.gene006028:CDS	60.0%
	TCCTCTTCCTTGGCTCCCAC+TGG	-	chr1.3:66855022-66855041	MS.gene006028:CDS	60.0%
	TCCTTGGCTCCCACTGGGAA+TGG	-	chr1.3:66855028-66855047	MS.gene006028:CDS	60.0%
!	CTGGGCTAGGTCCTCTTCCT+TGG	-	chr1.3:66855012-66855031	MS.gene006028:CDS	60.0%
!	GTGGCTCGGCAGATCCTTTG+TGG	+	chr1.3:66856161-66856180	None:intergenic	60.0%
	CCCAGTGGGAGCCAAGGAAG+AGG	+	chr1.3:66855026-66855045	None:intergenic	65.0%
	CCCATTCCCAGTGGGAGCCA+AGG	+	chr1.3:66855032-66855051	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	66854980	66856476	66854980	ID=MS.gene006028
chr1.3	mRNA	66854980	66856476	66854980	ID=MS.gene006028.t1;Parent=MS.gene006028
chr1.3	exon	66854980	66856476	66854980	ID=MS.gene006028.t1.exon1;Parent=MS.gene006028.t1
chr1.3	CDS	66854980	66856476	66854980	ID=cds.MS.gene006028.t1;Parent=MS.gene006028.t1

Gene Sequence

>MS.gene006028

ATGAATCCAACTGGAAGCTTGTGTGCTAACAACTGGGCTAGGTCCTCTTCCTTGGCTCCCACTGGGAATGGGTTACAAACGAATTTGTCTTCGGGTCCTTCCCCTTTTTACAGTGTGGGAATTGAAACACCTTTCAAAGAAATCAACCAACCATCTCGAACTCAGTCTGTGATTCCGGATGATATTAAGATCACTGATCAGGAAATGAGTAAACTTCAAGACTGGGATTCCAGTGTTATGTTGAATAAGCTTTCATTTTTGGAAGAAAAGATTCATCAGCTCCAGGATCTTGTGCATTTGATTGATACTAAGAAGTGTCAACCTTTTGAACAACCGCGTGAACTTGTGACTCAAGAACAACAACTCATCACAGCTGATTTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGGAGTCTTCTCCCTTCTGTTAGGAACTCCGGTACAAACACAAGTCCGTTGCTTGGACAGCTTAGCCAACTTAACGGGATTAGCCTTCCTTTTGGAACAGGCACAAGTTGTGGTATTCAGCCACAAAATAACAGTGCAACTACATTTTTCGATCAGTCCATTCAGAAGGATGTACCTAATAATTGTGAATTGGTGCAAAACAATACTGTGGAAGAACATGAACATAAAGACGAAGAAGATATGGAAGAGGGTGAGAATCTTGCCCCTGGTTCATATGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACAATCTGTGGCAAGGGTTTCAAGAGGGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAACCACACAAAGAAACTGGGTCCGAACCGAAGCTTATCAAGAGGTATTCGTGTCCCTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCACACGAAGAAGTTTTCAGTCATGGCAGATCTGAAAACTCATGAGAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGACCACAAAGGATCTGCCGAGCCACCTGATCGATGTGACACCAGAGAAAACGGTGCTGTGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGCTGATAGCATTATGGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCACCTTTGAACTTTGAAGGCTGTAACTTTGGCGGGTTTAATGAATTCTCCCAACCTCCGTTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGTCGGGTTCGTTTAATTATGCTCCTAAATCTGGTGGTGAATCATGTTCTGACAATCTGTAA

Protein sequence

>MS.gene006028.t1

MNPTGSLCANNWARSSSLAPTGNGLQTNLSSGPSPFYSVGIETPFKEINQPSRTQSVIPDDIKITDQEMSKLQDWDSSVMLNKLSFLEEKIHQLQDLVHLIDTKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGSLLPSVRNSGTNTSPLLGQLSQLNGISLPFGTGTSCGIQPQNNSATTFFDQSIQKDVPNNCELVQNNTVEEHEHKDEEDMEEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDHKGSAEPPDRCDTRENGAVVGSMNFCFGSNPSSENGADSIMDVKGNIDDPINYFSPLNFEGCNFGGFNEFSQPPFEDSEGSFSFLMSGSFNYAPKSGGESCSDNL