Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010523.t1 | XP_003612033.1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 2.20E-228 | 801.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010523.t1 | Q6Z2G9 | 62.1 | 422 | 136 | 7 | 1 | 404 | 13 | 428 | 8.7e-141 | 501.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010523.t1 | G7KEX1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 1.6e-228 | 801.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010523.t1 | TF | TUB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene90691 | MS.gene010523 | PPI |
MS.gene010523 | MS.gene24262 | PPI |
MS.gene27297 | MS.gene010523 | PPI |
MS.gene010523 | MS.gene26978 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010523.t1 | MTR_5g020580 | 97.525 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 0.0 | 819 |
MS.gene010523.t1 | MTR_8g077195 | 74.505 | 404 | 99 | 2 | 1 | 404 | 13 | 412 | 0.0 | 631 |
MS.gene010523.t1 | MTR_1g022370 | 62.796 | 422 | 127 | 8 | 1 | 404 | 13 | 422 | 0.0 | 510 |
MS.gene010523.t1 | MTR_8g077620 | 57.855 | 401 | 134 | 9 | 1 | 395 | 13 | 384 | 3.07e-156 | 446 |
MS.gene010523.t1 | MTR_8g077675 | 58.354 | 401 | 145 | 9 | 1 | 397 | 13 | 395 | 2.70e-155 | 444 |
MS.gene010523.t1 | MTR_2g007930 | 54.976 | 422 | 168 | 11 | 1 | 404 | 10 | 427 | 3.09e-150 | 432 |
MS.gene010523.t1 | MTR_2g020280 | 57.182 | 369 | 151 | 3 | 36 | 404 | 32 | 393 | 3.07e-149 | 428 |
MS.gene010523.t1 | MTR_1g098790 | 53.037 | 428 | 171 | 11 | 1 | 404 | 10 | 431 | 1.08e-145 | 421 |
MS.gene010523.t1 | MTR_1g088960 | 53.846 | 403 | 176 | 6 | 2 | 404 | 10 | 402 | 3.34e-144 | 416 |
MS.gene010523.t1 | MTR_2g076200 | 50.829 | 362 | 146 | 2 | 43 | 404 | 42 | 371 | 3.27e-127 | 372 |
MS.gene010523.t1 | MTR_8g077650 | 51.786 | 392 | 113 | 12 | 25 | 401 | 3 | 333 | 5.32e-119 | 349 |
MS.gene010523.t1 | MTR_2g020280 | 58.140 | 301 | 119 | 3 | 104 | 404 | 1 | 294 | 3.51e-118 | 345 |
MS.gene010523.t1 | MTR_2g076210 | 44.772 | 373 | 167 | 6 | 36 | 404 | 30 | 367 | 4.32e-101 | 305 |
MS.gene010523.t1 | MTR_8g077640 | 59.242 | 211 | 60 | 5 | 4 | 195 | 57 | 260 | 6.34e-65 | 212 |
MS.gene010523.t1 | MTR_8g077640 | 55.556 | 117 | 51 | 1 | 279 | 394 | 267 | 383 | 1.75e-33 | 129 |
MS.gene010523.t1 | MTR_1g023800 | 52.667 | 150 | 66 | 2 | 1 | 149 | 13 | 158 | 1.25e-49 | 165 |
MS.gene010523.t1 | MTR_0210s0010 | 71.134 | 97 | 22 | 1 | 86 | 182 | 9 | 99 | 2.50e-37 | 131 |
MS.gene010523.t1 | MTR_0479s0040 | 74.286 | 70 | 12 | 1 | 102 | 171 | 12 | 75 | 2.58e-25 | 98.6 |
MS.gene010523.t1 | MTR_2g105390 | 36.697 | 109 | 54 | 4 | 301 | 403 | 260 | 359 | 1.93e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010523.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene010523.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene010523.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 16 | 388 | 5.55e-155 | 443 |
MS.gene010523.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 40 | 412 | 9.17e-155 | 443 |
MS.gene010523.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 41 | 413 | 9.39e-155 | 443 |
MS.gene010523.t1 | AT1G25280 | 53.899 | 436 | 169 | 8 | 1 | 404 | 10 | 445 | 1.69e-151 | 436 |
MS.gene010523.t1 | AT2G47900 | 54.433 | 406 | 175 | 4 | 1 | 404 | 10 | 407 | 2.27e-150 | 432 |
MS.gene010523.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene010523.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene010523.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010523.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010523.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010523.t1 | AT1G43640 | 50.000 | 430 | 179 | 11 | 1 | 404 | 10 | 429 | 1.46e-140 | 408 |
MS.gene010523.t1 | AT5G18680 | 53.887 | 373 | 147 | 7 | 39 | 404 | 35 | 389 | 2.52e-130 | 380 |
MS.gene010523.t1 | AT1G43640 | 52.151 | 372 | 147 | 9 | 55 | 404 | 1 | 363 | 1.37e-128 | 375 |
MS.gene010523.t1 | AT3G06380 | 51.671 | 389 | 168 | 7 | 19 | 404 | 9 | 380 | 2.76e-128 | 375 |
MS.gene010523.t1 | AT1G53320 | 51.934 | 362 | 148 | 3 | 43 | 404 | 44 | 379 | 1.78e-124 | 365 |
MS.gene010523.t1 | AT5G18680 | 54.369 | 309 | 117 | 6 | 102 | 404 | 7 | 297 | 1.22e-105 | 314 |
MS.gene010523.t1 | AT3G06380 | 54.153 | 301 | 119 | 6 | 106 | 404 | 5 | 288 | 1.71e-101 | 303 |
MS.gene010523.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene010523.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene010523.t1 | AT1G61940 | 50.575 | 87 | 43 | 0 | 46 | 132 | 1 | 87 | 3.82e-26 | 106 |
MS.gene010523.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 46 | 106 | 1 | 61 | 5.83e-16 | 77.4 |
Find 105 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTGCTGGACCGGCTATT+TGG | 0.209525 | 5.3:-7808131 | None:intergenic |
CCAATTGGATCTTTACCTTT+TGG | 0.222216 | 5.3:-7808377 | None:intergenic |
TAACACGGCCCTTGAAATTT+AGG | 0.254077 | 5.3:-7808514 | None:intergenic |
CCAGCAGGAGATTTCATTCT+AGG | 0.267212 | 5.3:+7808144 | MS.gene010523:CDS |
TGGAAAAGATATATTTACTA+TGG | 0.274718 | 5.3:+7808640 | MS.gene010523:CDS |
CACAGACTTCATCATATCTT+TGG | 0.281729 | 5.3:+7807902 | MS.gene010523:CDS |
ATCACCTGCTTTAACGAAAT+AGG | 0.313540 | 5.3:-7806607 | None:intergenic |
TTGCAGCTGTTCATGCCATC+TGG | 0.337933 | 5.3:-7808483 | None:intergenic |
ATCTTGCAGTTTGGAAAGAT+TGG | 0.342353 | 5.3:+7808620 | MS.gene010523:CDS |
CGTCAATCTTCCACACTCTT+CGG | 0.347596 | 5.3:-7806581 | None:intergenic |
TTCAACCCTCGCAGAGTTGC+CGG | 0.349688 | 5.3:+7808412 | MS.gene010523:CDS |
GTCAATCTTCCACACTCTTC+GGG | 0.352453 | 5.3:-7806580 | None:intergenic |
GAGAAGGTTATCTTGCAGTT+TGG | 0.354935 | 5.3:+7808611 | MS.gene010523:CDS |
TATACCTGTCTCAGCTGTTC+AGG | 0.357164 | 5.3:+7808277 | MS.gene010523:CDS |
TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 5.3:+7806479 | MS.gene010523:CDS |
TCTGCATATCTATTGTACTA+TGG | 0.382229 | 5.3:+7806783 | MS.gene010523:CDS |
ATGATGCAATTCATTCTTCT+CGG | 0.382856 | 5.3:-7808248 | None:intergenic |
CCAAGGGCCATTTGAGTCTC+TGG | 0.405945 | 5.3:+7808442 | MS.gene010523:CDS |
ATAACCTTCTCTTGCTCTGC+AGG | 0.415381 | 5.3:-7808599 | None:intergenic |
ATGCTGGTGCCTAAATTTCA+AGG | 0.430024 | 5.3:+7808505 | MS.gene010523:CDS |
TGAGGAAAAGATGTAGGAGT+TGG | 0.437219 | 5.3:-7808314 | None:intergenic |
ACCTATTCAGCAGGGACAAT+GGG | 0.444059 | 5.3:+7806414 | MS.gene010523:CDS |
AGTGATGTTAGAGTGATATC+AGG | 0.447610 | 5.3:-7806388 | None:intergenic |
GAATTGCTTAAATCTCCAAT+TGG | 0.451744 | 5.3:-7808392 | None:intergenic |
TGGAGGTTGGCTGTCATATA+TGG | 0.452519 | 5.3:-7808090 | None:intergenic |
CTCCGATACAGTGCTTCATC+AGG | 0.459633 | 5.3:+7806745 | MS.gene010523:CDS |
GCCCATTGTCCCTGCTGAAT+AGG | 0.468212 | 5.3:-7806415 | None:intergenic |
CCAAAAGGTAAAGATCCAAT+TGG | 0.470093 | 5.3:+7808377 | MS.gene010523:CDS |
ATCACTTGAACCTATTCAGC+AGG | 0.471218 | 5.3:+7806405 | MS.gene010523:CDS |
TAGTTACACGCTGGAACTCT+TGG | 0.471948 | 5.3:-7808176 | None:intergenic |
AGCCAACCTCCACACGGAGC+TGG | 0.473234 | 5.3:+7808101 | MS.gene010523:CDS |
GGCATGAACAGCTGCAATGC+TGG | 0.474704 | 5.3:+7808489 | MS.gene010523:CDS |
AATGAAATCTCCTGCTGGAC+CGG | 0.476146 | 5.3:-7808139 | None:intergenic |
GCGGAGAACATTCAGCTCAT+AGG | 0.477645 | 5.3:-7808216 | None:intergenic |
AACTCAAGGAGATGAGGGAT+GGG | 0.484739 | 5.3:+7806296 | None:intergenic |
CTGAATGTTCTCCGCACTAG+AGG | 0.484848 | 5.3:+7808224 | MS.gene010523:CDS |
CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 5.3:+7807942 | MS.gene010523:CDS |
AACCAAATAGCCGGTCCAGC+AGG | 0.493265 | 5.3:+7808129 | MS.gene010523:CDS |
AATGGCCCTTGGCTCTGAAC+CGG | 0.498889 | 5.3:-7808431 | None:intergenic |
GTAATTTGAGGAAAAGATGT+AGG | 0.503684 | 5.3:-7808320 | None:intergenic |
GAACTCAAGGAGATGAGGGA+TGG | 0.505860 | 5.3:+7806295 | None:intergenic |
TGCAGCTGTTCATGCCATCT+GGG | 0.506117 | 5.3:-7808482 | None:intergenic |
GTTTCCTATTTCGTTAAAGC+AGG | 0.506221 | 5.3:+7806603 | MS.gene010523:CDS |
AAATGTTCATCAGTAATTTG+AGG | 0.509198 | 5.3:-7808332 | None:intergenic |
CCTTCCTGAACAGCTGAGAC+AGG | 0.514005 | 5.3:-7808281 | None:intergenic |
GAGTTGCCGGTTCAGAGCCA+AGG | 0.518280 | 5.3:+7808425 | MS.gene010523:CDS |
CAGGAGATTTCATTCTAGGC+AGG | 0.528326 | 5.3:+7808148 | MS.gene010523:CDS |
CATGGATCTCATTCACATGC+TGG | 0.528401 | 5.3:-7808728 | None:intergenic |
TTGAGTACCAGAGACTCAAA+TGG | 0.530012 | 5.3:-7808449 | None:intergenic |
AGTTAAGAACTTTCAACTTG+TGG | 0.534362 | 5.3:+7808547 | MS.gene010523:CDS |
GAAACGACAACAGCACGTGC+AGG | 0.536741 | 5.3:-7806502 | None:intergenic |
CCTAGAATGAAATCTCCTGC+TGG | 0.538624 | 5.3:-7808144 | None:intergenic |
CCTGTCTCAGCTGTTCAGGA+AGG | 0.540458 | 5.3:+7808281 | MS.gene010523:CDS |
CTGTCTCAGCTGTTCAGGAA+GGG | 0.541956 | 5.3:+7808282 | MS.gene010523:CDS |
CGAGGAGAGGTGTGGCAAGT+AGG | 0.542255 | 5.3:+7806332 | MS.gene010523:CDS |
GCATATCGCAAAGGCTTGGA+AGG | 0.543599 | 5.3:-7808684 | None:intergenic |
GCTGTCATATATGGTGAACT+TGG | 0.544644 | 5.3:-7808081 | None:intergenic |
GTGCTTCTGTGTGTAAATCA+TGG | 0.549837 | 5.3:+7806527 | MS.gene010523:CDS |
CCAGAGACTCAAATGGCCCT+TGG | 0.550663 | 5.3:-7808442 | None:intergenic |
TTCCAGCTCCGTGTGGAGGT+TGG | 0.551308 | 5.3:-7808103 | None:intergenic |
AACCTATTCAGCAGGGACAA+TGG | 0.551680 | 5.3:+7806413 | MS.gene010523:CDS |
TCTGAACCGGCAACTCTGCG+AGG | 0.556736 | 5.3:-7808418 | None:intergenic |
AAGGAGATGAGGGATGGGAT+TGG | 0.557067 | 5.3:+7806301 | None:intergenic |
TGCTACTTGATATAATTCGA+AGG | 0.558581 | 5.3:+7806455 | MS.gene010523:CDS |
TGTCTCAGCTGTTCAGGAAG+GGG | 0.560697 | 5.3:+7808283 | MS.gene010523:CDS |
ATCGGAGAATCACGAGGACC+CGG | 0.561657 | 5.3:-7806729 | None:intergenic |
CTCCTGATGAAGCACTGTAT+CGG | 0.562380 | 5.3:-7806747 | None:intergenic |
TTCTTCTCGGCCCTCTAGTG+CGG | 0.564773 | 5.3:-7808235 | None:intergenic |
GTCTCAGCTGTTCAGGAAGG+GGG | 0.566290 | 5.3:+7808284 | MS.gene010523:CDS |
CTGAACCGGCAACTCTGCGA+GGG | 0.569008 | 5.3:-7808417 | None:intergenic |
ATATCTATTGTACTATGGAC+TGG | 0.572719 | 5.3:+7806788 | MS.gene010523:CDS |
GCTACTTGATATAATTCGAA+GGG | 0.575810 | 5.3:+7806456 | MS.gene010523:CDS |
GCGTCAGCACCAGAGCCAAA+AGG | 0.578551 | 5.3:+7808362 | MS.gene010523:CDS |
TCAAGCATATCGCAAAGGCT+TGG | 0.579509 | 5.3:-7808688 | None:intergenic |
AACATTCAGCTCATAGGCAA+TGG | 0.582469 | 5.3:-7808210 | None:intergenic |
CTGGAATACAACCAAATAGC+CGG | 0.589720 | 5.3:+7808120 | MS.gene010523:CDS |
CGATACAGTGCTTCATCAGG+AGG | 0.590035 | 5.3:+7806748 | MS.gene010523:CDS |
CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 5.3:-7806554 | None:intergenic |
TTCTCCTGCAGAGCAAGAGA+AGG | 0.597006 | 5.3:+7808595 | MS.gene010523:CDS |
ATGCGTATGTTGGAAAACTC+AGG | 0.602255 | 5.3:+7807952 | MS.gene010523:CDS |
AGTTGCCGGTTCAGAGCCAA+GGG | 0.602888 | 5.3:+7808426 | MS.gene010523:CDS |
GCAGGAGAAACATTATGAGA+TGG | 0.604319 | 5.3:-7808581 | None:intergenic |
CAAGTAGGCATTCACAGCGT+CGG | 0.608761 | 5.3:+7806347 | MS.gene010523:CDS |
GGAAGGCAGAGAGTGGATAA+CGG | 0.610357 | 5.3:-7808667 | None:intergenic |
GCTGCTCAAGCATATCGCAA+AGG | 0.610612 | 5.3:-7808693 | None:intergenic |
TTTCAAGGGCCGTGTTACAG+TGG | 0.611483 | 5.3:+7808520 | MS.gene010523:CDS |
TGAATGTTCTCCGCACTAGA+GGG | 0.618617 | 5.3:+7808225 | MS.gene010523:CDS |
AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 5.3:-7808674 | None:intergenic |
TTCTGTGTGTAAATCATGGA+GGG | 0.630242 | 5.3:+7806531 | MS.gene010523:CDS |
AGATATGATGAAGTCTGTGC+CGG | 0.635175 | 5.3:-7807898 | None:intergenic |
GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 5.3:+7806571 | MS.gene010523:CDS |
TGCTGGTGCCTAAATTTCAA+GGG | 0.642974 | 5.3:+7808506 | MS.gene010523:CDS |
TAACTGAAGCCACTGTAACA+CGG | 0.643817 | 5.3:-7808529 | None:intergenic |
TGTATTCCAGCTCCGTGTGG+AGG | 0.645160 | 5.3:-7808107 | None:intergenic |
CTTCTGTGTGTAAATCATGG+AGG | 0.649209 | 5.3:+7806530 | MS.gene010523:CDS |
ATTGGTAATACGTCGAGGAG+AGG | 0.649495 | 5.3:+7806319 | MS.gene010523:CDS |
ATATCAAGTAGCAATTCAGA+TGG | 0.650336 | 5.3:-7806445 | None:intergenic |
GGTTGTATTCCAGCTCCGTG+TGG | 0.669899 | 5.3:-7808110 | None:intergenic |
CACTGTATCGGAGAATCACG+AGG | 0.670191 | 5.3:-7806735 | None:intergenic |
GATACAGTGCTTCATCAGGA+GGG | 0.688983 | 5.3:+7806749 | MS.gene010523:CDS |
TCACTTGAACCTATTCAGCA+GGG | 0.690245 | 5.3:+7806406 | MS.gene010523:CDS |
TAATACGTCGAGGAGAGGTG+TGG | 0.694801 | 5.3:+7806324 | MS.gene010523:CDS |
CTAACAATATAGTTACACGC+TGG | 0.696992 | 5.3:-7808185 | None:intergenic |
ATGGGATTGGTAATACGTCG+AGG | 0.700501 | 5.3:+7806314 | MS.gene010523:CDS |
TATGACAGCCAACCTCCACA+CGG | 0.700970 | 5.3:+7808095 | MS.gene010523:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTGTAATGCTAAATTTTA+GGG | + | chr5.3:7807288-7807307 | MS.gene010523:intron | 15.0% |
!!! | TTATTGTAATGCTAAATTTT+AGG | + | chr5.3:7807287-7807306 | MS.gene010523:intron | 15.0% |
!!! | TTTCATTTTTTTTTCTCAAA+GGG | + | chr5.3:7806863-7806882 | MS.gene010523:intron | 15.0% |
!!! | TTTTCATTTTTTTTTCTCAA+AGG | + | chr5.3:7806862-7806881 | MS.gene010523:intron | 15.0% |
!! | ACTTTCTCAAATTAATTACT+TGG | + | chr5.3:7807037-7807056 | MS.gene010523:intron | 20.0% |
!! | TACCAATTTCAAAATCATTA+AGG | - | chr5.3:7807786-7807805 | None:intergenic | 20.0% |
!! | TGGAAAAGATATATTTACTA+TGG | + | chr5.3:7808640-7808659 | MS.gene010523:CDS | 20.0% |
!! | TTATGAATTTAGATCTTGAA+CGG | + | chr5.3:7806932-7806951 | MS.gene010523:intron | 20.0% |
!! | TTTATTGCACTAAATATGTA+GGG | + | chr5.3:7806959-7806978 | MS.gene010523:intron | 20.0% |
!!! | TTTAAAATCACCCAAATAAA+GGG | - | chr5.3:7807479-7807498 | None:intergenic | 20.0% |
!!! | TTTAAGCAATTTTCAAGTAT+TGG | - | chr5.3:7807342-7807361 | None:intergenic | 20.0% |
!!! | TTTTATTGCACTAAATATGT+AGG | + | chr5.3:7806958-7806977 | MS.gene010523:intron | 20.0% |
! | AAATGTTCATCAGTAATTTG+AGG | - | chr5.3:7808335-7808354 | None:intergenic | 25.0% |
! | AATCATTAAGGTGAATTGAA+CGG | - | chr5.3:7807774-7807793 | None:intergenic | 25.0% |
! | CAAGTAATTTCTTAACTATG+AGG | - | chr5.3:7807386-7807405 | None:intergenic | 25.0% |
! | TTAATTACACGTGCATTATT+TGG | + | chr5.3:7807200-7807219 | MS.gene010523:intron | 25.0% |
!! | TCATTTGTTTCCCTTTATTT+GGG | + | chr5.3:7807466-7807485 | MS.gene010523:intron | 25.0% |
!!! | AAATTTTAGGGCTAATTCTA+CGG | + | chr5.3:7807300-7807319 | MS.gene010523:intron | 25.0% |
!!! | AACTGATGATAAATTTTGAC+AGG | + | chr5.3:7808042-7808061 | MS.gene010523:intron | 25.0% |
!!! | AATGTTGATTCGACAAAAAA+GGG | + | chr5.3:7807409-7807428 | MS.gene010523:intron | 25.0% |
!!! | ACTTTTTGTTTATGAATAGC+CGG | + | chr5.3:7806710-7806729 | MS.gene010523:intron | 25.0% |
!!! | CACCTTAATGATTTTGAAAT+TGG | + | chr5.3:7807781-7807800 | MS.gene010523:intron | 25.0% |
!!! | CTTTAAAATCACCCAAATAA+AGG | - | chr5.3:7807480-7807499 | None:intergenic | 25.0% |
!!! | TAGATGTTCTTTTTCATTGT+TGG | + | chr5.3:7807644-7807663 | MS.gene010523:intron | 25.0% |
!!! | TTAATTCTTCACTCCTTTTT+TGG | + | chr5.3:7806629-7806648 | MS.gene010523:intron | 25.0% |
!!! | TTCTGTTTTTTCTTATACAG+CGG | + | chr5.3:7807824-7807843 | MS.gene010523:intron | 25.0% |
!!! | TTGAATCACTTTTGAAAACT+TGG | + | chr5.3:7806906-7806925 | MS.gene010523:intron | 25.0% |
!!! | TTTTAACTTCTGACTTGAAT+GGG | + | chr5.3:7807692-7807711 | MS.gene010523:intron | 25.0% |
!!! | TTTTTAACTTCTGACTTGAA+TGG | + | chr5.3:7807691-7807710 | MS.gene010523:intron | 25.0% |
AACAACAATTACGCCAAAAA+AGG | - | chr5.3:7806645-7806664 | None:intergenic | 30.0% | |
AAGATACAGAACAACCAAAA+TGG | - | chr5.3:7806681-7806700 | None:intergenic | 30.0% | |
AGTTAAGAACTTTCAACTTG+TGG | + | chr5.3:7808547-7808566 | MS.gene010523:CDS | 30.0% | |
ATATCAAGTAGCAATTCAGA+TGG | - | chr5.3:7806448-7806467 | None:intergenic | 30.0% | |
ATATCTATTGTACTATGGAC+TGG | + | chr5.3:7806788-7806807 | MS.gene010523:CDS | 30.0% | |
ATGATGCAATTCATTCTTCT+CGG | - | chr5.3:7808251-7808270 | None:intergenic | 30.0% | |
CTCATTTGTTTCCCTTTATT+TGG | + | chr5.3:7807465-7807484 | MS.gene010523:intron | 30.0% | |
GAATTGCTTAAATCTCCAAT+TGG | - | chr5.3:7808395-7808414 | None:intergenic | 30.0% | |
GCTACTTGATATAATTCGAA+GGG | + | chr5.3:7806456-7806475 | MS.gene010523:CDS | 30.0% | |
GTAATTTGAGGAAAAGATGT+AGG | - | chr5.3:7808323-7808342 | None:intergenic | 30.0% | |
GTGTTGGAAATTTGAAAAGT+GGG | - | chr5.3:7808007-7808026 | None:intergenic | 30.0% | |
TAGCAGATAAAATAGTGTGT+TGG | - | chr5.3:7808023-7808042 | None:intergenic | 30.0% | |
TATTAGCTGCCAAAAAGATA+AGG | + | chr5.3:7807868-7807887 | MS.gene010523:CDS | 30.0% | |
TCTGCATATCTATTGTACTA+TGG | + | chr5.3:7806783-7806802 | MS.gene010523:CDS | 30.0% | |
TGTGTTGGAAATTTGAAAAG+TGG | - | chr5.3:7808008-7808027 | None:intergenic | 30.0% | |
TTGGAGTCATAGTATGAAAT+GGG | + | chr5.3:7807588-7807607 | MS.gene010523:intron | 30.0% | |
! | AAACTAGAAGTGCATTTCTT+TGG | + | chr5.3:7807569-7807588 | MS.gene010523:intron | 30.0% |
! | TGCTACTTGATATAATTCGA+AGG | + | chr5.3:7806455-7806474 | MS.gene010523:CDS | 30.0% |
! | TTTGACAGGTCTAACTTTTT+GGG | + | chr5.3:7808056-7808075 | MS.gene010523:intron | 30.0% |
! | TTTGGAGTCATAGTATGAAA+TGG | + | chr5.3:7807587-7807606 | MS.gene010523:intron | 30.0% |
! | TTTTGACAGGTCTAACTTTT+TGG | + | chr5.3:7808055-7808074 | MS.gene010523:intron | 30.0% |
!! | CAATGTTGATTCGACAAAAA+AGG | + | chr5.3:7807408-7807427 | MS.gene010523:intron | 30.0% |
!! | CTTTTTGTTTATGAATAGCC+GGG | + | chr5.3:7806711-7806730 | MS.gene010523:intron | 30.0% |
AGTGATGTTAGAGTGATATC+AGG | - | chr5.3:7806391-7806410 | None:intergenic | 35.0% | |
ATCACCTGCTTTAACGAAAT+AGG | - | chr5.3:7806610-7806629 | None:intergenic | 35.0% | |
ATCTTGCAGTTTGGAAAGAT+TGG | + | chr5.3:7808620-7808639 | MS.gene010523:CDS | 35.0% | |
CACAGACTTCATCATATCTT+TGG | + | chr5.3:7807902-7807921 | MS.gene010523:CDS | 35.0% | |
CACATTGAAGCAAACTTACA+TGG | - | chr5.3:7806816-7806835 | None:intergenic | 35.0% | |
CCAAAAGGTAAAGATCCAAT+TGG | + | chr5.3:7808377-7808396 | MS.gene010523:CDS | 35.0% | |
CTAACAATATAGTTACACGC+TGG | - | chr5.3:7808188-7808207 | None:intergenic | 35.0% | |
CTGAACAATCTCTTGTGTAA+CGG | - | chr5.3:7806557-7806576 | None:intergenic | 35.0% | |
GAGGAAAACAAAGCACAAAT+CGG | - | chr5.3:7807752-7807771 | None:intergenic | 35.0% | |
GTTTCCTATTTCGTTAAAGC+AGG | + | chr5.3:7806603-7806622 | MS.gene010523:CDS | 35.0% | |
TGATTCGACAAAAAAGGGAA+GGG | + | chr5.3:7807414-7807433 | MS.gene010523:intron | 35.0% | |
TTCTGTGTGTAAATCATGGA+GGG | + | chr5.3:7806531-7806550 | MS.gene010523:CDS | 35.0% | |
! | CATGTAAGTTTGCTTCAATG+TGG | + | chr5.3:7806814-7806833 | MS.gene010523:intron | 35.0% |
! | CCAATTGGATCTTTACCTTT+TGG | - | chr5.3:7808380-7808399 | None:intergenic | 35.0% |
! | GAAACAAATGAGTTGAGTTG+AGG | - | chr5.3:7807457-7807476 | None:intergenic | 35.0% |
! | TGGAAAACTCAGGTAAGTTT+TGG | + | chr5.3:7807962-7807981 | MS.gene010523:intron | 35.0% |
! | TTGATTCGACAAAAAAGGGA+AGG | + | chr5.3:7807413-7807432 | MS.gene010523:intron | 35.0% |
! | TTTTCGCTGCTTATCCATTT+TGG | + | chr5.3:7806664-7806683 | MS.gene010523:intron | 35.0% |
!! | TTTCAAGTATTGGTCTGATG+CGG | - | chr5.3:7807332-7807351 | None:intergenic | 35.0% |
!!! | TTTGGGTGATTTTAAAGTGC+CGG | + | chr5.3:7807483-7807502 | MS.gene010523:intron | 35.0% |
AAAAAGATAAGGAGGGCAAC+CGG | + | chr5.3:7807879-7807898 | MS.gene010523:CDS | 40.0% | |
AACAAAGCACAAATCGGTTG+AGG | - | chr5.3:7807746-7807765 | None:intergenic | 40.0% | |
AACATTCAGCTCATAGGCAA+TGG | - | chr5.3:7808213-7808232 | None:intergenic | 40.0% | |
AGATATGATGAAGTCTGTGC+CGG | - | chr5.3:7807901-7807920 | None:intergenic | 40.0% | |
AGCTGCCAAAAAGATAAGGA+GGG | + | chr5.3:7807872-7807891 | MS.gene010523:CDS | 40.0% | |
ATCACTTGAACCTATTCAGC+AGG | + | chr5.3:7806405-7806424 | MS.gene010523:CDS | 40.0% | |
ATGCGTATGTTGGAAAACTC+AGG | + | chr5.3:7807952-7807971 | MS.gene010523:CDS | 40.0% | |
ATGCTGGTGCCTAAATTTCA+AGG | + | chr5.3:7808505-7808524 | MS.gene010523:CDS | 40.0% | |
CATTAAGGTGAATTGAACGG+AGG | - | chr5.3:7807771-7807790 | None:intergenic | 40.0% | |
CTGGAATACAACCAAATAGC+CGG | + | chr5.3:7808120-7808139 | MS.gene010523:CDS | 40.0% | |
CTTCTGTGTGTAAATCATGG+AGG | + | chr5.3:7806530-7806549 | MS.gene010523:CDS | 40.0% | |
GACTTGAATGGGACAGAAAT+TGG | + | chr5.3:7807703-7807722 | MS.gene010523:intron | 40.0% | |
GAGAAGGTTATCTTGCAGTT+TGG | + | chr5.3:7808611-7808630 | MS.gene010523:CDS | 40.0% | |
GCAGGAGAAACATTATGAGA+TGG | - | chr5.3:7808584-7808603 | None:intergenic | 40.0% | |
GCTGTCATATATGGTGAACT+TGG | - | chr5.3:7808084-7808103 | None:intergenic | 40.0% | |
GTGCTTCTGTGTGTAAATCA+TGG | + | chr5.3:7806527-7806546 | MS.gene010523:CDS | 40.0% | |
GTTCGAACATGTGCATTACA+TGG | + | chr5.3:7807061-7807080 | MS.gene010523:intron | 40.0% | |
TAACACGGCCCTTGAAATTT+AGG | - | chr5.3:7808517-7808536 | None:intergenic | 40.0% | |
TAACTGAAGCCACTGTAACA+CGG | - | chr5.3:7808532-7808551 | None:intergenic | 40.0% | |
TAGAAGAGACTGAGACTTCT+TGG | + | chr5.3:7806479-7806498 | MS.gene010523:CDS | 40.0% | |
TAGCTGCCAAAAAGATAAGG+AGG | + | chr5.3:7807871-7807890 | MS.gene010523:CDS | 40.0% | |
TCAAAAACAAGTCTCCCAGA+TGG | + | chr5.3:7808468-7808487 | MS.gene010523:CDS | 40.0% | |
TCACTTGAACCTATTCAGCA+GGG | + | chr5.3:7806406-7806425 | MS.gene010523:CDS | 40.0% | |
TGAGGAAAAGATGTAGGAGT+TGG | - | chr5.3:7808317-7808336 | None:intergenic | 40.0% | |
TGCTGGTGCCTAAATTTCAA+GGG | + | chr5.3:7808506-7808525 | MS.gene010523:CDS | 40.0% | |
TTGAGTACCAGAGACTCAAA+TGG | - | chr5.3:7808452-7808471 | None:intergenic | 40.0% | |
! | TTTTCCAACATACGCATTGC+TGG | - | chr5.3:7807949-7807968 | None:intergenic | 40.0% |
AACCTATTCAGCAGGGACAA+TGG | + | chr5.3:7806413-7806432 | MS.gene010523:CDS | 45.0% | |
AATGAAATCTCCTGCTGGAC+CGG | - | chr5.3:7808142-7808161 | None:intergenic | 45.0% | |
ACAGAAATTGGCTGAACCTG+TGG | + | chr5.3:7807715-7807734 | MS.gene010523:intron | 45.0% | |
ACCTATTCAGCAGGGACAAT+GGG | + | chr5.3:7806414-7806433 | MS.gene010523:CDS | 45.0% | |
ATAACCTTCTCTTGCTCTGC+AGG | - | chr5.3:7808602-7808621 | None:intergenic | 45.0% | |
CAGGAGATTTCATTCTAGGC+AGG | + | chr5.3:7808148-7808167 | MS.gene010523:CDS | 45.0% | |
CCAGCAGGAGATTTCATTCT+AGG | + | chr5.3:7808144-7808163 | MS.gene010523:CDS | 45.0% | |
CCTAGAATGAAATCTCCTGC+TGG | - | chr5.3:7808147-7808166 | None:intergenic | 45.0% | |
CGTCAATCTTCCACACTCTT+CGG | - | chr5.3:7806584-7806603 | None:intergenic | 45.0% | |
CTAAAATCCGACAGCCTCTA+GGG | - | chr5.3:7807513-7807532 | None:intergenic | 45.0% | |
GATACAGTGCTTCATCAGGA+GGG | + | chr5.3:7806749-7806768 | MS.gene010523:CDS | 45.0% | |
GTCAATCTTCCACACTCTTC+GGG | - | chr5.3:7806583-7806602 | None:intergenic | 45.0% | |
TAGTTACACGCTGGAACTCT+TGG | - | chr5.3:7808179-7808198 | None:intergenic | 45.0% | |
TATACCTGTCTCAGCTGTTC+AGG | + | chr5.3:7808277-7808296 | MS.gene010523:CDS | 45.0% | |
TCAAGCATATCGCAAAGGCT+TGG | - | chr5.3:7808691-7808710 | None:intergenic | 45.0% | |
TGAATGTTCTCCGCACTAGA+GGG | + | chr5.3:7808225-7808244 | MS.gene010523:CDS | 45.0% | |
TTCGACAAAAAAGGGAAGGG+AGG | + | chr5.3:7807417-7807436 | MS.gene010523:intron | 45.0% | |
! | ATGGGATTGGTAATACGTCG+AGG | + | chr5.3:7806314-7806333 | MS.gene010523:CDS | 45.0% |
! | ATTGGTAATACGTCGAGGAG+AGG | + | chr5.3:7806319-7806338 | MS.gene010523:CDS | 45.0% |
! | GGTTGCCCTCCTTATCTTTT+TGG | - | chr5.3:7807880-7807899 | None:intergenic | 45.0% |
! | TCTAAAATCCGACAGCCTCT+AGG | - | chr5.3:7807514-7807533 | None:intergenic | 45.0% |
! | TGGAGGTTGGCTGTCATATA+TGG | - | chr5.3:7808093-7808112 | None:intergenic | 45.0% |
!! | CTCCTGATGAAGCACTGTAT+CGG | - | chr5.3:7806750-7806769 | None:intergenic | 45.0% |
!!! | GGATCTTTACCTTTTGGCTC+TGG | - | chr5.3:7808374-7808393 | None:intergenic | 45.0% |
ACAAAAAAGGGAAGGGAGGC+GGG | + | chr5.3:7807421-7807440 | MS.gene010523:intron | 50.0% | |
ATCGGTTGAGGTGTATCCAC+AGG | - | chr5.3:7807734-7807753 | None:intergenic | 50.0% | |
CAAGTAGGCATTCACAGCGT+CGG | + | chr5.3:7806347-7806366 | MS.gene010523:CDS | 50.0% | |
CACTGTATCGGAGAATCACG+AGG | - | chr5.3:7806738-7806757 | None:intergenic | 50.0% | |
CGATACAGTGCTTCATCAGG+AGG | + | chr5.3:7806748-7806767 | MS.gene010523:CDS | 50.0% | |
CGTTCCAGCAATGCGTATGT+TGG | + | chr5.3:7807942-7807961 | MS.gene010523:CDS | 50.0% | |
CTCCGATACAGTGCTTCATC+AGG | + | chr5.3:7806745-7806764 | MS.gene010523:CDS | 50.0% | |
CTGAATGTTCTCCGCACTAG+AGG | + | chr5.3:7808224-7808243 | MS.gene010523:CDS | 50.0% | |
CTGTCTCAGCTGTTCAGGAA+GGG | + | chr5.3:7808282-7808301 | MS.gene010523:CDS | 50.0% | |
GACAAAAAAGGGAAGGGAGG+CGG | + | chr5.3:7807420-7807439 | MS.gene010523:intron | 50.0% | |
GCATATCGCAAAGGCTTGGA+AGG | - | chr5.3:7808687-7808706 | None:intergenic | 50.0% | |
GCGGAGAACATTCAGCTCAT+AGG | - | chr5.3:7808219-7808238 | None:intergenic | 50.0% | |
GCTGCTCAAGCATATCGCAA+AGG | - | chr5.3:7808696-7808715 | None:intergenic | 50.0% | |
GGAAGGCAGAGAGTGGATAA+CGG | - | chr5.3:7808670-7808689 | None:intergenic | 50.0% | |
TAATACGTCGAGGAGAGGTG+TGG | + | chr5.3:7806324-7806343 | MS.gene010523:CDS | 50.0% | |
TATGACAGCCAACCTCCACA+CGG | + | chr5.3:7808095-7808114 | MS.gene010523:CDS | 50.0% | |
TGCAGCTGTTCATGCCATCT+GGG | - | chr5.3:7808485-7808504 | None:intergenic | 50.0% | |
TGTCTCAGCTGTTCAGGAAG+GGG | + | chr5.3:7808283-7808302 | MS.gene010523:CDS | 50.0% | |
TTCTCCTGCAGAGCAAGAGA+AGG | + | chr5.3:7808595-7808614 | MS.gene010523:CDS | 50.0% | |
TTGCAGCTGTTCATGCCATC+TGG | - | chr5.3:7808486-7808505 | None:intergenic | 50.0% | |
TTTCAAGGGCCGTGTTACAG+TGG | + | chr5.3:7808520-7808539 | MS.gene010523:CDS | 50.0% | |
AACCAAATAGCCGGTCCAGC+AGG | + | chr5.3:7808129-7808148 | MS.gene010523:CDS | 55.0% | |
AAGGCTTGGAAGGCAGAGAG+TGG | - | chr5.3:7808677-7808696 | None:intergenic | 55.0% | |
ATCGGAGAATCACGAGGACC+CGG | - | chr5.3:7806732-7806751 | None:intergenic | 55.0% | |
CCAAGGGCCATTTGAGTCTC+TGG | + | chr5.3:7808442-7808461 | MS.gene010523:CDS | 55.0% | |
CCAGAGACTCAAATGGCCCT+TGG | - | chr5.3:7808445-7808464 | None:intergenic | 55.0% | |
CCTGTCTCAGCTGTTCAGGA+AGG | + | chr5.3:7808281-7808300 | MS.gene010523:CDS | 55.0% | |
CCTTCCTGAACAGCTGAGAC+AGG | - | chr5.3:7808284-7808303 | None:intergenic | 55.0% | |
GAAACGACAACAGCACGTGC+AGG | - | chr5.3:7806505-7806524 | None:intergenic | 55.0% | |
GCCCATTGTCCCTGCTGAAT+AGG | - | chr5.3:7806418-7806437 | None:intergenic | 55.0% | |
GGCATGAACAGCTGCAATGC+TGG | + | chr5.3:7808489-7808508 | MS.gene010523:CDS | 55.0% | |
GGTTGTATTCCAGCTCCGTG+TGG | - | chr5.3:7808113-7808132 | None:intergenic | 55.0% | |
GTCTCAGCTGTTCAGGAAGG+GGG | + | chr5.3:7808284-7808303 | MS.gene010523:CDS | 55.0% | |
GTTCAGACTCCCGAAGAGTG+TGG | + | chr5.3:7806571-7806590 | MS.gene010523:CDS | 55.0% | |
TGTATTCCAGCTCCGTGTGG+AGG | - | chr5.3:7808110-7808129 | None:intergenic | 55.0% | |
TTCAACCCTCGCAGAGTTGC+CGG | + | chr5.3:7808412-7808431 | MS.gene010523:CDS | 55.0% | |
TTCTTCTCGGCCCTCTAGTG+CGG | - | chr5.3:7808238-7808257 | None:intergenic | 55.0% | |
!! | AAAGTGCCGGTTCACCCTAG+AGG | + | chr5.3:7807496-7807515 | MS.gene010523:intron | 55.0% |
!! | AATGGCCCTTGGCTCTGAAC+CGG | - | chr5.3:7808434-7808453 | None:intergenic | 55.0% |
!! | AGTTGCCGGTTCAGAGCCAA+GGG | + | chr5.3:7808426-7808445 | MS.gene010523:CDS | 55.0% |
CGGTTCACCCTAGAGGCTGT+CGG | + | chr5.3:7807503-7807522 | MS.gene010523:intron | 60.0% | |
CTCCTGCTGGACCGGCTATT+TGG | - | chr5.3:7808134-7808153 | None:intergenic | 60.0% | |
CTGAACCGGCAACTCTGCGA+GGG | - | chr5.3:7808420-7808439 | None:intergenic | 60.0% | |
GCGTCAGCACCAGAGCCAAA+AGG | + | chr5.3:7808362-7808381 | MS.gene010523:CDS | 60.0% | |
TCTGAACCGGCAACTCTGCG+AGG | - | chr5.3:7808421-7808440 | None:intergenic | 60.0% | |
TTCCAGCTCCGTGTGGAGGT+TGG | - | chr5.3:7808106-7808125 | None:intergenic | 60.0% | |
! | CGAGGAGAGGTGTGGCAAGT+AGG | + | chr5.3:7806332-7806351 | MS.gene010523:CDS | 60.0% |
!! | CGACAGCCTCTAGGGTGAAC+CGG | - | chr5.3:7807505-7807524 | None:intergenic | 60.0% |
!! | GAGTTGCCGGTTCAGAGCCA+AGG | + | chr5.3:7808425-7808444 | MS.gene010523:CDS | 60.0% |
AGCCAACCTCCACACGGAGC+TGG | + | chr5.3:7808101-7808120 | MS.gene010523:CDS | 65.0% | |
AGGGAAGGGAGGCGGGAGTA+TGG | + | chr5.3:7807428-7807447 | MS.gene010523:intron | 65.0% | |
! | GGGAAGGGAGGCGGGAGTAT+GGG | + | chr5.3:7807429-7807448 | MS.gene010523:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 7806307 | 7808742 | 7806307 | ID=MS.gene010523 |
chr5.3 | mRNA | 7806307 | 7808742 | 7806307 | ID=MS.gene010523.t1;Parent=MS.gene010523 |
chr5.3 | exon | 7806307 | 7806624 | 7806307 | ID=MS.gene010523.t1.exon1;Parent=MS.gene010523.t1 |
chr5.3 | CDS | 7806307 | 7806624 | 7806307 | ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1 |
chr5.3 | exon | 7806729 | 7806816 | 7806729 | ID=MS.gene010523.t1.exon2;Parent=MS.gene010523.t1 |
chr5.3 | CDS | 7806729 | 7806816 | 7806729 | ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1 |
chr5.3 | exon | 7807844 | 7807973 | 7807844 | ID=MS.gene010523.t1.exon3;Parent=MS.gene010523.t1 |
chr5.3 | CDS | 7807844 | 7807973 | 7807844 | ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1 |
chr5.3 | exon | 7808064 | 7808742 | 7808064 | ID=MS.gene010523.t1.exon4;Parent=MS.gene010523.t1 |
chr5.3 | CDS | 7808064 | 7808742 | 7808064 | ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1 |
Gene Sequence |
Protein sequence |