AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010523


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010523.t1 MTR_5g020580 97.525 404 10 0 1 404 13 416 0.0 819
MS.gene010523.t1 MTR_8g077195 74.505 404 99 2 1 404 13 412 0.0 631
MS.gene010523.t1 MTR_1g022370 62.796 422 127 8 1 404 13 422 0.0 510
MS.gene010523.t1 MTR_8g077620 57.855 401 134 9 1 395 13 384 3.07e-156 446
MS.gene010523.t1 MTR_8g077675 58.354 401 145 9 1 397 13 395 2.70e-155 444
MS.gene010523.t1 MTR_2g007930 54.976 422 168 11 1 404 10 427 3.09e-150 432
MS.gene010523.t1 MTR_2g020280 57.182 369 151 3 36 404 32 393 3.07e-149 428
MS.gene010523.t1 MTR_1g098790 53.037 428 171 11 1 404 10 431 1.08e-145 421
MS.gene010523.t1 MTR_1g088960 53.846 403 176 6 2 404 10 402 3.34e-144 416
MS.gene010523.t1 MTR_2g076200 50.829 362 146 2 43 404 42 371 3.27e-127 372
MS.gene010523.t1 MTR_8g077650 51.786 392 113 12 25 401 3 333 5.32e-119 349
MS.gene010523.t1 MTR_2g020280 58.140 301 119 3 104 404 1 294 3.51e-118 345
MS.gene010523.t1 MTR_2g076210 44.772 373 167 6 36 404 30 367 4.32e-101 305
MS.gene010523.t1 MTR_8g077640 59.242 211 60 5 4 195 57 260 6.34e-65 212
MS.gene010523.t1 MTR_8g077640 55.556 117 51 1 279 394 267 383 1.75e-33 129
MS.gene010523.t1 MTR_1g023800 52.667 150 66 2 1 149 13 158 1.25e-49 165
MS.gene010523.t1 MTR_0210s0010 71.134 97 22 1 86 182 9 99 2.50e-37 131
MS.gene010523.t1 MTR_0479s0040 74.286 70 12 1 102 171 12 75 2.58e-25 98.6
MS.gene010523.t1 MTR_2g105390 36.697 109 54 4 301 403 260 359 1.93e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010523.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene010523.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene010523.t1 AT1G47270 58.333 396 131 9 20 404 16 388 5.55e-155 443
MS.gene010523.t1 AT1G47270 58.333 396 131 9 20 404 40 412 9.17e-155 443
MS.gene010523.t1 AT1G47270 58.333 396 131 9 20 404 41 413 9.39e-155 443
MS.gene010523.t1 AT1G25280 53.899 436 169 8 1 404 10 445 1.69e-151 436
MS.gene010523.t1 AT2G47900 54.433 406 175 4 1 404 10 407 2.27e-150 432
MS.gene010523.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene010523.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene010523.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010523.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010523.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010523.t1 AT1G43640 50.000 430 179 11 1 404 10 429 1.46e-140 408
MS.gene010523.t1 AT5G18680 53.887 373 147 7 39 404 35 389 2.52e-130 380
MS.gene010523.t1 AT1G43640 52.151 372 147 9 55 404 1 363 1.37e-128 375
MS.gene010523.t1 AT3G06380 51.671 389 168 7 19 404 9 380 2.76e-128 375
MS.gene010523.t1 AT1G53320 51.934 362 148 3 43 404 44 379 1.78e-124 365
MS.gene010523.t1 AT5G18680 54.369 309 117 6 102 404 7 297 1.22e-105 314
MS.gene010523.t1 AT3G06380 54.153 301 119 6 106 404 5 288 1.71e-101 303
MS.gene010523.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene010523.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene010523.t1 AT1G61940 50.575 87 43 0 46 132 1 87 3.82e-26 106
MS.gene010523.t1 AT1G61940 54.098 61 28 0 46 106 1 61 5.83e-16 77.4

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5.3:-7808131 None:intergenic
CCAATTGGATCTTTACCTTT+TGG 0.222216 5.3:-7808377 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5.3:-7808514 None:intergenic
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5.3:+7808144 MS.gene010523:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5.3:+7808640 MS.gene010523:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5.3:+7807902 MS.gene010523:CDS
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5.3:-7806607 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5.3:-7808483 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5.3:+7808620 MS.gene010523:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5.3:-7806581 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5.3:+7808412 MS.gene010523:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5.3:-7806580 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5.3:+7808611 MS.gene010523:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5.3:+7808277 MS.gene010523:CDS
TAGAAGAGACTGAGACTTCT+TGG 0.372030 5.3:+7806479 MS.gene010523:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5.3:+7806783 MS.gene010523:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5.3:-7808248 None:intergenic
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5.3:+7808442 MS.gene010523:CDS
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5.3:-7808599 None:intergenic
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5.3:+7808505 MS.gene010523:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5.3:-7808314 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5.3:+7806414 MS.gene010523:CDS
AGTGATGTTAGAGTGATATC+AGG 0.447610 5.3:-7806388 None:intergenic
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5.3:-7808392 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5.3:-7808090 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5.3:+7806745 MS.gene010523:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5.3:-7806415 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5.3:+7808377 MS.gene010523:CDS
ATCACTTGAACCTATTCAGC+AGG 0.471218 5.3:+7806405 MS.gene010523:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5.3:-7808176 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5.3:+7808101 MS.gene010523:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5.3:+7808489 MS.gene010523:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5.3:-7808139 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5.3:-7808216 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5.3:+7806296 None:intergenic
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5.3:+7808224 MS.gene010523:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5.3:+7807942 MS.gene010523:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5.3:+7808129 MS.gene010523:CDS
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5.3:-7808431 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5.3:-7808320 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5.3:+7806295 None:intergenic
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5.3:-7808482 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5.3:+7806603 MS.gene010523:CDS
AAATGTTCATCAGTAATTTG+AGG 0.509198 5.3:-7808332 None:intergenic
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5.3:-7808281 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5.3:+7808425 MS.gene010523:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5.3:+7808148 MS.gene010523:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5.3:-7808728 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5.3:-7808449 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5.3:+7808547 MS.gene010523:CDS
GAAACGACAACAGCACGTGC+AGG 0.536741 5.3:-7806502 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5.3:-7808144 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5.3:+7808281 MS.gene010523:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5.3:+7808282 MS.gene010523:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5.3:+7806332 MS.gene010523:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5.3:-7808684 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5.3:-7808081 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5.3:+7806527 MS.gene010523:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5.3:-7808442 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5.3:-7808103 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5.3:+7806413 MS.gene010523:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5.3:-7808418 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5.3:+7806301 None:intergenic
TGCTACTTGATATAATTCGA+AGG 0.558581 5.3:+7806455 MS.gene010523:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5.3:+7808283 MS.gene010523:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5.3:-7806729 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5.3:-7806747 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5.3:-7808235 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5.3:+7808284 MS.gene010523:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5.3:-7808417 None:intergenic
ATATCTATTGTACTATGGAC+TGG 0.572719 5.3:+7806788 MS.gene010523:CDS
GCTACTTGATATAATTCGAA+GGG 0.575810 5.3:+7806456 MS.gene010523:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5.3:+7808362 MS.gene010523:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5.3:-7808688 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5.3:-7808210 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5.3:+7808120 MS.gene010523:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5.3:+7806748 MS.gene010523:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5.3:-7806554 None:intergenic
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5.3:+7808595 MS.gene010523:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5.3:+7807952 MS.gene010523:CDS
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5.3:+7808426 MS.gene010523:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5.3:-7808581 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5.3:+7806347 MS.gene010523:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5.3:-7808667 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5.3:-7808693 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5.3:+7808520 MS.gene010523:CDS
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5.3:+7808225 MS.gene010523:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5.3:-7808674 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5.3:+7806531 MS.gene010523:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5.3:-7807898 None:intergenic
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5.3:+7806571 MS.gene010523:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5.3:+7808506 MS.gene010523:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5.3:-7808529 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5.3:-7808107 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5.3:+7806530 MS.gene010523:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5.3:+7806319 MS.gene010523:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5.3:-7806445 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5.3:-7808110 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5.3:-7806735 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5.3:+7806749 MS.gene010523:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5.3:+7806406 MS.gene010523:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5.3:+7806324 MS.gene010523:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5.3:-7808185 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5.3:+7806314 MS.gene010523:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5.3:+7808095 MS.gene010523:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTAATGCTAAATTTTA+GGG + chr5.3:7807288-7807307 MS.gene010523:intron 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG + chr5.3:7807287-7807306 MS.gene010523:intron 15.0%
!!! TTTCATTTTTTTTTCTCAAA+GGG + chr5.3:7806863-7806882 MS.gene010523:intron 15.0%
!!! TTTTCATTTTTTTTTCTCAA+AGG + chr5.3:7806862-7806881 MS.gene010523:intron 15.0%
!! ACTTTCTCAAATTAATTACT+TGG + chr5.3:7807037-7807056 MS.gene010523:intron 20.0%
!! TACCAATTTCAAAATCATTA+AGG - chr5.3:7807786-7807805 None:intergenic 20.0%
!! TGGAAAAGATATATTTACTA+TGG + chr5.3:7808640-7808659 MS.gene010523:CDS 20.0%
!! TTATGAATTTAGATCTTGAA+CGG + chr5.3:7806932-7806951 MS.gene010523:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG + chr5.3:7806959-7806978 MS.gene010523:intron 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG - chr5.3:7807479-7807498 None:intergenic 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG - chr5.3:7807342-7807361 None:intergenic 20.0%
!!! TTTTATTGCACTAAATATGT+AGG + chr5.3:7806958-7806977 MS.gene010523:intron 20.0%
! AAATGTTCATCAGTAATTTG+AGG - chr5.3:7808335-7808354 None:intergenic 25.0%
! AATCATTAAGGTGAATTGAA+CGG - chr5.3:7807774-7807793 None:intergenic 25.0%
! CAAGTAATTTCTTAACTATG+AGG - chr5.3:7807386-7807405 None:intergenic 25.0%
! TTAATTACACGTGCATTATT+TGG + chr5.3:7807200-7807219 MS.gene010523:intron 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG + chr5.3:7807466-7807485 MS.gene010523:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG + chr5.3:7807300-7807319 MS.gene010523:intron 25.0%
!!! AACTGATGATAAATTTTGAC+AGG + chr5.3:7808042-7808061 MS.gene010523:intron 25.0%
!!! AATGTTGATTCGACAAAAAA+GGG + chr5.3:7807409-7807428 MS.gene010523:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG + chr5.3:7806710-7806729 MS.gene010523:intron 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG + chr5.3:7807781-7807800 MS.gene010523:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG - chr5.3:7807480-7807499 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG + chr5.3:7807644-7807663 MS.gene010523:intron 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG + chr5.3:7806629-7806648 MS.gene010523:intron 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG + chr5.3:7807824-7807843 MS.gene010523:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG + chr5.3:7806906-7806925 MS.gene010523:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG + chr5.3:7807692-7807711 MS.gene010523:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG + chr5.3:7807691-7807710 MS.gene010523:intron 25.0%
AACAACAATTACGCCAAAAA+AGG - chr5.3:7806645-7806664 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG - chr5.3:7806681-7806700 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG + chr5.3:7808547-7808566 MS.gene010523:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG - chr5.3:7806448-7806467 None:intergenic 30.0%
ATATCTATTGTACTATGGAC+TGG + chr5.3:7806788-7806807 MS.gene010523:CDS 30.0%
ATGATGCAATTCATTCTTCT+CGG - chr5.3:7808251-7808270 None:intergenic 30.0%
CTCATTTGTTTCCCTTTATT+TGG + chr5.3:7807465-7807484 MS.gene010523:intron 30.0%
GAATTGCTTAAATCTCCAAT+TGG - chr5.3:7808395-7808414 None:intergenic 30.0%
GCTACTTGATATAATTCGAA+GGG + chr5.3:7806456-7806475 MS.gene010523:CDS 30.0%
GTAATTTGAGGAAAAGATGT+AGG - chr5.3:7808323-7808342 None:intergenic 30.0%
GTGTTGGAAATTTGAAAAGT+GGG - chr5.3:7808007-7808026 None:intergenic 30.0%
TAGCAGATAAAATAGTGTGT+TGG - chr5.3:7808023-7808042 None:intergenic 30.0%
TATTAGCTGCCAAAAAGATA+AGG + chr5.3:7807868-7807887 MS.gene010523:CDS 30.0%
TCTGCATATCTATTGTACTA+TGG + chr5.3:7806783-7806802 MS.gene010523:CDS 30.0%
TGTGTTGGAAATTTGAAAAG+TGG - chr5.3:7808008-7808027 None:intergenic 30.0%
TTGGAGTCATAGTATGAAAT+GGG + chr5.3:7807588-7807607 MS.gene010523:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG + chr5.3:7807569-7807588 MS.gene010523:intron 30.0%
! TGCTACTTGATATAATTCGA+AGG + chr5.3:7806455-7806474 MS.gene010523:CDS 30.0%
! TTTGACAGGTCTAACTTTTT+GGG + chr5.3:7808056-7808075 MS.gene010523:intron 30.0%
! TTTGGAGTCATAGTATGAAA+TGG + chr5.3:7807587-7807606 MS.gene010523:intron 30.0%
! TTTTGACAGGTCTAACTTTT+TGG + chr5.3:7808055-7808074 MS.gene010523:intron 30.0%
!! CAATGTTGATTCGACAAAAA+AGG + chr5.3:7807408-7807427 MS.gene010523:intron 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG + chr5.3:7806711-7806730 MS.gene010523:intron 30.0%
AGTGATGTTAGAGTGATATC+AGG - chr5.3:7806391-7806410 None:intergenic 35.0%
ATCACCTGCTTTAACGAAAT+AGG - chr5.3:7806610-7806629 None:intergenic 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG + chr5.3:7808620-7808639 MS.gene010523:CDS 35.0%
CACAGACTTCATCATATCTT+TGG + chr5.3:7807902-7807921 MS.gene010523:CDS 35.0%
CACATTGAAGCAAACTTACA+TGG - chr5.3:7806816-7806835 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG + chr5.3:7808377-7808396 MS.gene010523:CDS 35.0%
CTAACAATATAGTTACACGC+TGG - chr5.3:7808188-7808207 None:intergenic 35.0%
CTGAACAATCTCTTGTGTAA+CGG - chr5.3:7806557-7806576 None:intergenic 35.0%
GAGGAAAACAAAGCACAAAT+CGG - chr5.3:7807752-7807771 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG + chr5.3:7806603-7806622 MS.gene010523:CDS 35.0%
TGATTCGACAAAAAAGGGAA+GGG + chr5.3:7807414-7807433 MS.gene010523:intron 35.0%
TTCTGTGTGTAAATCATGGA+GGG + chr5.3:7806531-7806550 MS.gene010523:CDS 35.0%
! CATGTAAGTTTGCTTCAATG+TGG + chr5.3:7806814-7806833 MS.gene010523:intron 35.0%
! CCAATTGGATCTTTACCTTT+TGG - chr5.3:7808380-7808399 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG - chr5.3:7807457-7807476 None:intergenic 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG + chr5.3:7807962-7807981 MS.gene010523:intron 35.0%
! TTGATTCGACAAAAAAGGGA+AGG + chr5.3:7807413-7807432 MS.gene010523:intron 35.0%
! TTTTCGCTGCTTATCCATTT+TGG + chr5.3:7806664-7806683 MS.gene010523:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG - chr5.3:7807332-7807351 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG + chr5.3:7807483-7807502 MS.gene010523:intron 35.0%
AAAAAGATAAGGAGGGCAAC+CGG + chr5.3:7807879-7807898 MS.gene010523:CDS 40.0%
AACAAAGCACAAATCGGTTG+AGG - chr5.3:7807746-7807765 None:intergenic 40.0%
AACATTCAGCTCATAGGCAA+TGG - chr5.3:7808213-7808232 None:intergenic 40.0%
AGATATGATGAAGTCTGTGC+CGG - chr5.3:7807901-7807920 None:intergenic 40.0%
AGCTGCCAAAAAGATAAGGA+GGG + chr5.3:7807872-7807891 MS.gene010523:CDS 40.0%
ATCACTTGAACCTATTCAGC+AGG + chr5.3:7806405-7806424 MS.gene010523:CDS 40.0%
ATGCGTATGTTGGAAAACTC+AGG + chr5.3:7807952-7807971 MS.gene010523:CDS 40.0%
ATGCTGGTGCCTAAATTTCA+AGG + chr5.3:7808505-7808524 MS.gene010523:CDS 40.0%
CATTAAGGTGAATTGAACGG+AGG - chr5.3:7807771-7807790 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG + chr5.3:7808120-7808139 MS.gene010523:CDS 40.0%
CTTCTGTGTGTAAATCATGG+AGG + chr5.3:7806530-7806549 MS.gene010523:CDS 40.0%
GACTTGAATGGGACAGAAAT+TGG + chr5.3:7807703-7807722 MS.gene010523:intron 40.0%
GAGAAGGTTATCTTGCAGTT+TGG + chr5.3:7808611-7808630 MS.gene010523:CDS 40.0%
GCAGGAGAAACATTATGAGA+TGG - chr5.3:7808584-7808603 None:intergenic 40.0%
GCTGTCATATATGGTGAACT+TGG - chr5.3:7808084-7808103 None:intergenic 40.0%
GTGCTTCTGTGTGTAAATCA+TGG + chr5.3:7806527-7806546 MS.gene010523:CDS 40.0%
GTTCGAACATGTGCATTACA+TGG + chr5.3:7807061-7807080 MS.gene010523:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG - chr5.3:7808517-7808536 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG - chr5.3:7808532-7808551 None:intergenic 40.0%
TAGAAGAGACTGAGACTTCT+TGG + chr5.3:7806479-7806498 MS.gene010523:CDS 40.0%
TAGCTGCCAAAAAGATAAGG+AGG + chr5.3:7807871-7807890 MS.gene010523:CDS 40.0%
TCAAAAACAAGTCTCCCAGA+TGG + chr5.3:7808468-7808487 MS.gene010523:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG + chr5.3:7806406-7806425 MS.gene010523:CDS 40.0%
TGAGGAAAAGATGTAGGAGT+TGG - chr5.3:7808317-7808336 None:intergenic 40.0%
TGCTGGTGCCTAAATTTCAA+GGG + chr5.3:7808506-7808525 MS.gene010523:CDS 40.0%
TTGAGTACCAGAGACTCAAA+TGG - chr5.3:7808452-7808471 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG - chr5.3:7807949-7807968 None:intergenic 40.0%
AACCTATTCAGCAGGGACAA+TGG + chr5.3:7806413-7806432 MS.gene010523:CDS 45.0%
AATGAAATCTCCTGCTGGAC+CGG - chr5.3:7808142-7808161 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG + chr5.3:7807715-7807734 MS.gene010523:intron 45.0%
ACCTATTCAGCAGGGACAAT+GGG + chr5.3:7806414-7806433 MS.gene010523:CDS 45.0%
ATAACCTTCTCTTGCTCTGC+AGG - chr5.3:7808602-7808621 None:intergenic 45.0%
CAGGAGATTTCATTCTAGGC+AGG + chr5.3:7808148-7808167 MS.gene010523:CDS 45.0%
CCAGCAGGAGATTTCATTCT+AGG + chr5.3:7808144-7808163 MS.gene010523:CDS 45.0%
CCTAGAATGAAATCTCCTGC+TGG - chr5.3:7808147-7808166 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG - chr5.3:7806584-7806603 None:intergenic 45.0%
CTAAAATCCGACAGCCTCTA+GGG - chr5.3:7807513-7807532 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG + chr5.3:7806749-7806768 MS.gene010523:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG - chr5.3:7806583-7806602 None:intergenic 45.0%
TAGTTACACGCTGGAACTCT+TGG - chr5.3:7808179-7808198 None:intergenic 45.0%
TATACCTGTCTCAGCTGTTC+AGG + chr5.3:7808277-7808296 MS.gene010523:CDS 45.0%
TCAAGCATATCGCAAAGGCT+TGG - chr5.3:7808691-7808710 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG + chr5.3:7808225-7808244 MS.gene010523:CDS 45.0%
TTCGACAAAAAAGGGAAGGG+AGG + chr5.3:7807417-7807436 MS.gene010523:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG + chr5.3:7806314-7806333 MS.gene010523:CDS 45.0%
! ATTGGTAATACGTCGAGGAG+AGG + chr5.3:7806319-7806338 MS.gene010523:CDS 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG - chr5.3:7807880-7807899 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG - chr5.3:7807514-7807533 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG - chr5.3:7808093-7808112 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG - chr5.3:7806750-7806769 None:intergenic 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG - chr5.3:7808374-7808393 None:intergenic 45.0%
ACAAAAAAGGGAAGGGAGGC+GGG + chr5.3:7807421-7807440 MS.gene010523:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG - chr5.3:7807734-7807753 None:intergenic 50.0%
CAAGTAGGCATTCACAGCGT+CGG + chr5.3:7806347-7806366 MS.gene010523:CDS 50.0%
CACTGTATCGGAGAATCACG+AGG - chr5.3:7806738-7806757 None:intergenic 50.0%
CGATACAGTGCTTCATCAGG+AGG + chr5.3:7806748-7806767 MS.gene010523:CDS 50.0%
CGTTCCAGCAATGCGTATGT+TGG + chr5.3:7807942-7807961 MS.gene010523:CDS 50.0%
CTCCGATACAGTGCTTCATC+AGG + chr5.3:7806745-7806764 MS.gene010523:CDS 50.0%
CTGAATGTTCTCCGCACTAG+AGG + chr5.3:7808224-7808243 MS.gene010523:CDS 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG + chr5.3:7808282-7808301 MS.gene010523:CDS 50.0%
GACAAAAAAGGGAAGGGAGG+CGG + chr5.3:7807420-7807439 MS.gene010523:intron 50.0%
GCATATCGCAAAGGCTTGGA+AGG - chr5.3:7808687-7808706 None:intergenic 50.0%
GCGGAGAACATTCAGCTCAT+AGG - chr5.3:7808219-7808238 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG - chr5.3:7808696-7808715 None:intergenic 50.0%
GGAAGGCAGAGAGTGGATAA+CGG - chr5.3:7808670-7808689 None:intergenic 50.0%
TAATACGTCGAGGAGAGGTG+TGG + chr5.3:7806324-7806343 MS.gene010523:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG + chr5.3:7808095-7808114 MS.gene010523:CDS 50.0%
TGCAGCTGTTCATGCCATCT+GGG - chr5.3:7808485-7808504 None:intergenic 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG + chr5.3:7808283-7808302 MS.gene010523:CDS 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG + chr5.3:7808595-7808614 MS.gene010523:CDS 50.0%
TTGCAGCTGTTCATGCCATC+TGG - chr5.3:7808486-7808505 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG + chr5.3:7808520-7808539 MS.gene010523:CDS 50.0%
AACCAAATAGCCGGTCCAGC+AGG + chr5.3:7808129-7808148 MS.gene010523:CDS 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG - chr5.3:7808677-7808696 None:intergenic 55.0%
ATCGGAGAATCACGAGGACC+CGG - chr5.3:7806732-7806751 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG + chr5.3:7808442-7808461 MS.gene010523:CDS 55.0%
CCAGAGACTCAAATGGCCCT+TGG - chr5.3:7808445-7808464 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG + chr5.3:7808281-7808300 MS.gene010523:CDS 55.0%
CCTTCCTGAACAGCTGAGAC+AGG - chr5.3:7808284-7808303 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG - chr5.3:7806505-7806524 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG - chr5.3:7806418-7806437 None:intergenic 55.0%
GGCATGAACAGCTGCAATGC+TGG + chr5.3:7808489-7808508 MS.gene010523:CDS 55.0%
GGTTGTATTCCAGCTCCGTG+TGG - chr5.3:7808113-7808132 None:intergenic 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG + chr5.3:7808284-7808303 MS.gene010523:CDS 55.0%
GTTCAGACTCCCGAAGAGTG+TGG + chr5.3:7806571-7806590 MS.gene010523:CDS 55.0%
TGTATTCCAGCTCCGTGTGG+AGG - chr5.3:7808110-7808129 None:intergenic 55.0%
TTCAACCCTCGCAGAGTTGC+CGG + chr5.3:7808412-7808431 MS.gene010523:CDS 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG - chr5.3:7808238-7808257 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG + chr5.3:7807496-7807515 MS.gene010523:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG - chr5.3:7808434-7808453 None:intergenic 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG + chr5.3:7808426-7808445 MS.gene010523:CDS 55.0%
CGGTTCACCCTAGAGGCTGT+CGG + chr5.3:7807503-7807522 MS.gene010523:intron 60.0%
CTCCTGCTGGACCGGCTATT+TGG - chr5.3:7808134-7808153 None:intergenic 60.0%
CTGAACCGGCAACTCTGCGA+GGG - chr5.3:7808420-7808439 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG + chr5.3:7808362-7808381 MS.gene010523:CDS 60.0%
TCTGAACCGGCAACTCTGCG+AGG - chr5.3:7808421-7808440 None:intergenic 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG - chr5.3:7808106-7808125 None:intergenic 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG + chr5.3:7806332-7806351 MS.gene010523:CDS 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG - chr5.3:7807505-7807524 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG + chr5.3:7808425-7808444 MS.gene010523:CDS 60.0%
AGCCAACCTCCACACGGAGC+TGG + chr5.3:7808101-7808120 MS.gene010523:CDS 65.0%
AGGGAAGGGAGGCGGGAGTA+TGG + chr5.3:7807428-7807447 MS.gene010523:intron 65.0%
! GGGAAGGGAGGCGGGAGTAT+GGG + chr5.3:7807429-7807448 MS.gene010523:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 7806307 7808742 7806307 ID=MS.gene010523
chr5.3 mRNA 7806307 7808742 7806307 ID=MS.gene010523.t1;Parent=MS.gene010523
chr5.3 exon 7806307 7806624 7806307 ID=MS.gene010523.t1.exon1;Parent=MS.gene010523.t1
chr5.3 CDS 7806307 7806624 7806307 ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1
chr5.3 exon 7806729 7806816 7806729 ID=MS.gene010523.t1.exon2;Parent=MS.gene010523.t1
chr5.3 CDS 7806729 7806816 7806729 ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1
chr5.3 exon 7807844 7807973 7807844 ID=MS.gene010523.t1.exon3;Parent=MS.gene010523.t1
chr5.3 CDS 7807844 7807973 7807844 ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1
chr5.3 exon 7808064 7808742 7808064 ID=MS.gene010523.t1.exon4;Parent=MS.gene010523.t1
chr5.3 CDS 7808064 7808742 7808064 ID=cds.MS.gene010523.t1;Parent=MS.gene010523.t1
Gene Sequence

>MS.gene010523

ATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGGTGATTAATTCTTCACTCCTTTTTTGGCGTAATTGTTGTTTTTCGCTGCTTATCCATTTTGGTTGTTCTGTATCTTATGCTCTCTACTTTTTGTTTATGAATAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATGTAAGTTTGCTTCAATGTGGATAATGTTGCAGATGTAAACAATTTTTTTCATTTTTTTTTCTCAAAGGGTGTCATCTTGCATTTGAATTTTGAATCACTTTTGAAAACTTGGAGTTTATGAATTTAGATCTTGAACGGCTATTTTATTGCACTAAATATGTAGGGTTTTTCATATATAAAACAAATCACTACACATCACAATTACGTCATCATCTTGAGAACTTTCTCAAATTAATTACTTGGTGTTCGAACATGTGCATTACATGGTTTCGAACACGTGCACATGTGTGAGATATTTTAAATAAGAAATATACAAAATCGATTTTCTAAATCAAATTCACTACACATCACGATTACGTCATCATCTTGAGAACTTTCTTAAATTAATTACACGTGCATTATTTGGTACTCGAACACGTGCACATGTGTGAGATATTCTAAATAATAAATAGACAAAATTGATTTTTTTTTTATTGTAATGCTAAATTTTAGGGCTAATTCTACGGCGTAGACCGCATCAGACCAATACTTGAAAATTGCTTAAAACTGTGATGCGATCGACATTGCCTCATAGTTAAGAAATTACTTGTTCAATGTTGATTCGACAAAAAAGGGAAGGGAGGCGGGAGTATGGGTGCCTCAACTCAACTCATTTGTTTCCCTTTATTTGGGTGATTTTAAAGTGCCGGTTCACCCTAGAGGCTGTCGGATTTTAGATTTATATAAATGAACTTTTCTTTTCTTTCGTTGAAAAACTAGAAGTGCATTTCTTTGGAGTCATAGTATGAAATGGGATAATGAAAAAATGAGTCATAAAAAACTGCAAATAGATGTTCTTTTTCATTGTTGGATTGAAGTTACAACATATTTTTTTTTTTTAACTTCTGACTTGAATGGGACAGAAATTGGCTGAACCTGTGGATACACCTCAACCGATTTGTGCTTTGTTTTCCTCCGTTCAATTCACCTTAATGATTTTGAAATTGGTATTTGAGAAGCTTGTTCTCTTCTGTTTTTTCTTATACAGCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTAAGTTTTGGTCGATAGAAATTTTACTTGCCCACTTTTCAAATTTCCAACACACTATTTTATCTGCTAACTGATGATAAATTTTGACAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>MS.gene010523.t1

MRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE