Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90691.t1 | XP_013466123.1 | 93.6 | 422 | 15 | 2 | 1 | 410 | 1 | 422 | 2.60E-224 | 787.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90691.t1 | Q6Z2G9 | 61.3 | 437 | 133 | 8 | 1 | 410 | 1 | 428 | 1.2e-140 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90691.t1 | A0A072VEB5 | 93.6 | 422 | 15 | 2 | 1 | 410 | 1 | 422 | 1.8e-224 | 787.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90691.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90691 | MS.gene012024 | PPI |
| MS.gene90691 | MS.gene010523 | PPI |
| MS.gene90691 | MS.gene87465 | PPI |
| MS.gene02465 | MS.gene90691 | PPI |
| MS.gene76417 | MS.gene90691 | PPI |
| MS.gene02475 | MS.gene90691 | PPI |
| MS.gene90691 | MS.gene010525 | PPI |
| MS.gene90691 | MS.gene59384 | PPI |
| MS.gene90691 | MS.gene02464 | PPI |
| MS.gene90691 | MS.gene02443 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90691.t1 | MTR_1g022370 | 95.024 | 422 | 9 | 2 | 1 | 410 | 1 | 422 | 0.0 | 827 |
| MS.gene90691.t1 | MTR_5g020580 | 62.559 | 422 | 140 | 5 | 1 | 410 | 1 | 416 | 0.0 | 534 |
| MS.gene90691.t1 | MTR_8g077195 | 60.808 | 421 | 145 | 5 | 1 | 410 | 1 | 412 | 1.49e-178 | 504 |
| MS.gene90691.t1 | MTR_1g098790 | 50.339 | 443 | 175 | 7 | 1 | 410 | 1 | 431 | 4.30e-148 | 427 |
| MS.gene90691.t1 | MTR_2g020280 | 59.003 | 361 | 138 | 4 | 57 | 410 | 36 | 393 | 2.03e-147 | 424 |
| MS.gene90691.t1 | MTR_2g007930 | 51.494 | 435 | 178 | 7 | 1 | 410 | 1 | 427 | 6.26e-147 | 424 |
| MS.gene90691.t1 | MTR_1g088960 | 51.250 | 400 | 181 | 6 | 20 | 410 | 8 | 402 | 5.54e-135 | 393 |
| MS.gene90691.t1 | MTR_2g076200 | 49.858 | 353 | 156 | 4 | 58 | 410 | 40 | 371 | 3.53e-121 | 356 |
| MS.gene90691.t1 | MTR_2g020280 | 58.249 | 297 | 114 | 4 | 121 | 410 | 1 | 294 | 9.33e-117 | 342 |
| MS.gene90691.t1 | MTR_8g077675 | 47.722 | 417 | 182 | 11 | 1 | 403 | 1 | 395 | 1.14e-115 | 343 |
| MS.gene90691.t1 | MTR_8g077620 | 47.174 | 407 | 186 | 10 | 1 | 401 | 1 | 384 | 8.22e-115 | 341 |
| MS.gene90691.t1 | MTR_1g023800 | 90.446 | 157 | 7 | 1 | 1 | 157 | 1 | 149 | 1.19e-97 | 288 |
| MS.gene90691.t1 | MTR_2g076210 | 45.658 | 357 | 168 | 10 | 57 | 410 | 34 | 367 | 4.87e-94 | 287 |
| MS.gene90691.t1 | MTR_8g077650 | 41.779 | 371 | 155 | 11 | 51 | 407 | 10 | 333 | 7.19e-79 | 247 |
| MS.gene90691.t1 | MTR_8g077640 | 42.157 | 408 | 158 | 13 | 1 | 400 | 46 | 383 | 4.67e-76 | 241 |
| MS.gene90691.t1 | MTR_0210s0010 | 44.792 | 96 | 46 | 2 | 105 | 200 | 11 | 99 | 8.59e-17 | 76.3 |
| MS.gene90691.t1 | MTR_2g105390 | 28.223 | 287 | 128 | 15 | 140 | 409 | 134 | 359 | 2.02e-14 | 74.7 |
| MS.gene90691.t1 | MTR_0479s0040 | 50.000 | 70 | 28 | 2 | 119 | 188 | 12 | 74 | 3.78e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90691.t1 | AT1G47270 | 61.795 | 390 | 129 | 5 | 28 | 410 | 12 | 388 | 3.80e-167 | 474 |
| MS.gene90691.t1 | AT1G47270 | 59.611 | 411 | 140 | 6 | 7 | 410 | 21 | 412 | 4.58e-167 | 474 |
| MS.gene90691.t1 | AT1G47270 | 59.709 | 412 | 140 | 6 | 6 | 410 | 21 | 413 | 4.69e-167 | 474 |
| MS.gene90691.t1 | AT2G18280 | 55.797 | 414 | 158 | 6 | 1 | 410 | 1 | 393 | 9.30e-157 | 448 |
| MS.gene90691.t1 | AT2G18280 | 55.797 | 414 | 158 | 6 | 1 | 410 | 1 | 393 | 9.30e-157 | 448 |
| MS.gene90691.t1 | AT2G47900 | 51.202 | 416 | 187 | 4 | 1 | 410 | 1 | 406 | 2.22e-147 | 424 |
| MS.gene90691.t1 | AT2G47900 | 51.202 | 416 | 187 | 4 | 1 | 410 | 1 | 406 | 2.22e-147 | 424 |
| MS.gene90691.t1 | AT2G47900 | 51.079 | 417 | 187 | 5 | 1 | 410 | 1 | 407 | 1.04e-145 | 420 |
| MS.gene90691.t1 | AT1G25280 | 49.889 | 449 | 182 | 8 | 1 | 410 | 1 | 445 | 4.58e-143 | 415 |
| MS.gene90691.t1 | AT1G76900 | 48.922 | 464 | 174 | 8 | 1 | 410 | 1 | 455 | 2.16e-140 | 408 |
| MS.gene90691.t1 | AT1G76900 | 48.922 | 464 | 174 | 8 | 1 | 410 | 1 | 455 | 2.16e-140 | 408 |
| MS.gene90691.t1 | AT1G76900 | 48.922 | 464 | 174 | 8 | 1 | 410 | 1 | 455 | 2.16e-140 | 408 |
| MS.gene90691.t1 | AT1G43640 | 45.928 | 442 | 194 | 9 | 1 | 410 | 1 | 429 | 6.48e-128 | 376 |
| MS.gene90691.t1 | AT3G06380 | 50.943 | 371 | 168 | 6 | 46 | 410 | 18 | 380 | 1.06e-124 | 366 |
| MS.gene90691.t1 | AT1G53320 | 47.595 | 395 | 183 | 6 | 19 | 410 | 6 | 379 | 6.06e-121 | 356 |
| MS.gene90691.t1 | AT5G18680 | 51.093 | 366 | 159 | 8 | 55 | 410 | 34 | 389 | 4.40e-120 | 354 |
| MS.gene90691.t1 | AT1G43640 | 49.454 | 366 | 155 | 5 | 72 | 410 | 1 | 363 | 3.60e-118 | 348 |
| MS.gene90691.t1 | AT3G06380 | 51.370 | 292 | 130 | 4 | 123 | 410 | 5 | 288 | 1.12e-100 | 301 |
| MS.gene90691.t1 | AT5G18680 | 50.820 | 305 | 131 | 7 | 115 | 410 | 3 | 297 | 4.02e-97 | 292 |
| MS.gene90691.t1 | AT1G25280 | 51.311 | 267 | 94 | 4 | 180 | 410 | 1 | 267 | 2.74e-85 | 261 |
| MS.gene90691.t1 | AT1G25280 | 51.311 | 267 | 94 | 4 | 180 | 410 | 1 | 267 | 2.74e-85 | 261 |
| MS.gene90691.t1 | AT1G61940 | 51.724 | 87 | 42 | 0 | 63 | 149 | 1 | 87 | 3.64e-25 | 103 |
| MS.gene90691.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 63 | 123 | 1 | 61 | 8.88e-15 | 73.9 |
Find 84 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTATTTGCAGCTCTTTC+TGG | 0.147891 | 1.4:+1923018 | MS.gene90691:intron |
| AAGCCAGAAGTTGTTGAATT+TGG | 0.203153 | 1.4:+1923555 | MS.gene90691:CDS |
| GTGCCTCAGTTTGTAGATTA+TGG | 0.216681 | 1.4:+1922374 | MS.gene90691:CDS |
| GTTCTGCAGCTGAAACATTT+TGG | 0.237846 | 1.4:-1923734 | None:intergenic |
| TAGGAGCAGTTCCTCCTTCT+TGG | 0.256813 | 1.4:-1923479 | None:intergenic |
| TCCTTCTTGGACTGAAGATA+TGG | 0.272539 | 1.4:-1923466 | None:intergenic |
| GAGCCAAATTCAACAACTTC+TGG | 0.280199 | 1.4:-1923558 | None:intergenic |
| CTCTCTGATGATGGTGTTGT+TGG | 0.286926 | 1.4:-1922253 | None:intergenic |
| ATTACCTGCTTCAGTGATAT+AGG | 0.293400 | 1.4:-1922454 | None:intergenic |
| TGCTGCAACTTGCAACTTGA+TGG | 0.318405 | 1.4:-1923312 | None:intergenic |
| TCCACATATAGTTTATATCT+TGG | 0.326644 | 1.4:+1922642 | MS.gene90691:CDS |
| CACTGAATTGGATTGTCTCT+TGG | 0.352418 | 1.4:-1922594 | None:intergenic |
| CTCTTAATAAAACACTGAAT+TGG | 0.367629 | 1.4:-1922606 | None:intergenic |
| TTGGAAGTACTTGCTTCATA+TGG | 0.387123 | 1.4:-1923341 | None:intergenic |
| ATACTTACATTGGAAAGTTA+AGG | 0.392067 | 1.4:+1923142 | MS.gene90691:CDS |
| TTCATGCTCATTGTGGCAAT+TGG | 0.398540 | 1.4:-1923517 | None:intergenic |
| GTTGGTGCTGATAGTGATAT+TGG | 0.400859 | 1.4:-1922235 | None:intergenic |
| TTACCTGCTTCAGTGATATA+GGG | 0.408155 | 1.4:-1922453 | None:intergenic |
| CACCATCATCAGAGAGTCAA+TGG | 0.410827 | 1.4:+1922260 | MS.gene90691:CDS |
| ACCAAGTTCACGATCTTAGA+TGG | 0.416091 | 1.4:+1923264 | MS.gene90691:CDS |
| TGCAGTTGTTCATGCCATCT+TGG | 0.442171 | 1.4:-1923630 | None:intergenic |
| CCTTCTTGGACTGAAGATAT+GGG | 0.443500 | 1.4:-1923465 | None:intergenic |
| GTTGCTACTTTATAGTTAGC+AGG | 0.444061 | 1.4:-1923372 | None:intergenic |
| GAGTATTGTGAGAGAGATGA+AGG | 0.449992 | 1.4:+1922114 | MS.gene90691:CDS |
| ACCATCTAAGATCGTGAACT+TGG | 0.451643 | 1.4:-1923265 | None:intergenic |
| AAGGAGATGAAAGAGGGAAT+TGG | 0.461217 | 1.4:+1922133 | MS.gene90691:CDS |
| GATATTGGTGAGGAACATTC+TGG | 0.475287 | 1.4:-1922220 | None:intergenic |
| ATTGGATTGTCTCTTGGAGC+AGG | 0.482570 | 1.4:-1922588 | None:intergenic |
| GGGACGGGTTACAGTGGCTT+CGG | 0.485242 | 1.4:+1923674 | MS.gene90691:CDS |
| AGGAACTGCTCCTACTCCTA+TGG | 0.485778 | 1.4:+1923488 | MS.gene90691:CDS |
| GAGATGAAGGAGATGAAAGA+GGG | 0.489271 | 1.4:+1922127 | MS.gene90691:CDS |
| GTGTTTGAATTTCAAGGGAC+GGG | 0.490017 | 1.4:+1923659 | MS.gene90691:CDS |
| AGGAGTTATCATTCACAAGC+TGG | 0.492801 | 1.4:-1923876 | None:intergenic |
| AAGTTGCAAGTTGCAGCAAA+AGG | 0.503666 | 1.4:+1923317 | MS.gene90691:CDS |
| TGATATGAGCAAACTTCTCT+TGG | 0.505017 | 1.4:+1923041 | MS.gene90691:CDS |
| TTATATCTTGGTCTAAGCCC+TGG | 0.508714 | 1.4:+1922654 | MS.gene90691:CDS |
| AGAGATGAAGGAGATGAAAG+AGG | 0.511465 | 1.4:+1922126 | MS.gene90691:CDS |
| AGACACTTGAACAGTGTGGC+TGG | 0.511733 | 1.4:+1922422 | MS.gene90691:CDS |
| TAGTTAGCAGGAGCAGCCCT+TGG | 0.515473 | 1.4:-1923360 | None:intergenic |
| ACTATTAGACATAATTCAAA+GGG | 0.516941 | 1.4:+1922303 | MS.gene90691:CDS |
| ACCAAGATATAAACTATATG+TGG | 0.517704 | 1.4:-1922643 | None:intergenic |
| ATTGTACTCCGCATTCGCCT+TGG | 0.518756 | 1.4:-1923432 | None:intergenic |
| GGTGTTTGAATTTCAAGGGA+CGG | 0.518832 | 1.4:+1923658 | MS.gene90691:CDS |
| TTATGGAGAGACATAACAAA+GGG | 0.526760 | 1.4:+1922391 | MS.gene90691:CDS |
| AGAGCTAACAATACTTACAT+TGG | 0.531671 | 1.4:+1923132 | MS.gene90691:CDS |
| TGGCAATTGGTAAATTCCAT+AGG | 0.538026 | 1.4:-1923504 | None:intergenic |
| TTTCCCTATATCACTGAAGC+AGG | 0.541444 | 1.4:+1922450 | MS.gene90691:CDS |
| ATGTTGGTGTTTGAATTTCA+AGG | 0.542716 | 1.4:+1923653 | MS.gene90691:CDS |
| TTGGTAAATTCCATAGGAGT+AGG | 0.543440 | 1.4:-1923498 | None:intergenic |
| GCCCATTGACTCTCTGATGA+TGG | 0.543492 | 1.4:-1922262 | None:intergenic |
| TACTATTAGACATAATTCAA+AGG | 0.554134 | 1.4:+1922302 | MS.gene90691:CDS |
| ATATGAAGCAAGTACTTCCA+AGG | 0.555692 | 1.4:+1923343 | MS.gene90691:CDS |
| ATTATGTCTAATAGTAACTC+AGG | 0.562516 | 1.4:-1922295 | None:intergenic |
| TGTTGGTGTTTGAATTTCAA+GGG | 0.562671 | 1.4:+1923654 | MS.gene90691:CDS |
| GCTACAAGTGCTCGGCGAGA+TGG | 0.582646 | 1.4:-1922349 | None:intergenic |
| ACCATCATCAGAGAGTCAAT+GGG | 0.583262 | 1.4:+1922261 | MS.gene90691:CDS |
| TTGCAGATTCATGCTCATTG+TGG | 0.583392 | 1.4:-1923524 | None:intergenic |
| TCTCTCACAATACTCTTGAA+AGG | 0.583510 | 1.4:-1922106 | None:intergenic |
| CCCATATCTTCAGTCCAAGA+AGG | 0.587259 | 1.4:+1923465 | MS.gene90691:CDS |
| CTCAATGTTCTTCGTACGAG+AGG | 0.596421 | 1.4:+1923408 | MS.gene90691:CDS |
| GGCATGAACAACTGCAATGT+TGG | 0.599403 | 1.4:+1923637 | MS.gene90691:CDS |
| GAGAGGATATCGATAATCCA+TGG | 0.599763 | 1.4:-1923805 | None:intergenic |
| CTTCTTGGACTGAAGATATG+GGG | 0.599973 | 1.4:-1923464 | None:intergenic |
| CGAGAGGTCCAAGGCGAATG+CGG | 0.601851 | 1.4:+1923424 | MS.gene90691:CDS |
| ATTAGACATAATTCAAAGGG+TGG | 0.608482 | 1.4:+1922306 | MS.gene90691:CDS |
| ACTAAGCTTATGCATAGACA+TGG | 0.614879 | 1.4:+1922181 | MS.gene90691:CDS |
| TTCTTCGTACGAGAGGTCCA+AGG | 0.616949 | 1.4:+1923415 | MS.gene90691:CDS |
| GCTGCTCAAACAGATTGCAA+AGG | 0.630739 | 1.4:-1923841 | None:intergenic |
| ATTGGCAACATGTATAGAAG+AGG | 0.636703 | 1.4:+1922151 | MS.gene90691:CDS |
| CGGGAAGGACATATTCACCA+TGG | 0.637363 | 1.4:+1923788 | MS.gene90691:CDS |
| TGGAAGCTAGTGAAACCACT+TGG | 0.639315 | 1.4:+1922326 | MS.gene90691:CDS |
| TTTCAAGGGACGGGTTACAG+TGG | 0.641025 | 1.4:+1923668 | MS.gene90691:CDS |
| AGGCACAAGCTACAAGTGCT+CGG | 0.645228 | 1.4:-1922357 | None:intergenic |
| TATGAAGCAAGTACTTCCAA+GGG | 0.646074 | 1.4:+1923344 | MS.gene90691:CDS |
| ATGTCTAATAGTAACTCAGG+AGG | 0.663267 | 1.4:-1922292 | None:intergenic |
| AAGGCTTGAAAAGCAGAGAG+AGG | 0.664732 | 1.4:-1923822 | None:intergenic |
| ATTATGGAGAGACATAACAA+AGG | 0.674047 | 1.4:+1922390 | MS.gene90691:CDS |
| ATATCTTCAGTCCAAGAAGG+AGG | 0.675556 | 1.4:+1923468 | MS.gene90691:CDS |
| TCTCCATAATCTACAAACTG+AGG | 0.678466 | 1.4:-1922377 | None:intergenic |
| TGCTCGGCGAGATGGCCAAG+TGG | 0.681754 | 1.4:-1922341 | None:intergenic |
| TGCTGATAGTGATATTGGTG+AGG | 0.701371 | 1.4:-1922230 | None:intergenic |
| GATGGAAGCGAAGAAACATG+TGG | 0.713919 | 1.4:-1923294 | None:intergenic |
| GGAAGCGAAGAAACATGTGG+AGG | 0.757377 | 1.4:-1923291 | None:intergenic |
| GTTAAGACACTTGAACAGTG+TGG | 0.771470 | 1.4:+1922418 | MS.gene90691:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGCCTAAAAGA+AGG | - | chr1.4:1922807-1922826 | None:intergenic | 20.0% |
| !! | AATAACACAATTCACAAATA+TGG | - | chr1.4:1923001-1923020 | None:intergenic | 20.0% |
| !! | ACATGAAATTATTCTCTATT+TGG | + | chr1.4:1922693-1922712 | MS.gene90691:intron | 20.0% |
| !! | ACTATTAGACATAATTCAAA+GGG | + | chr1.4:1922303-1922322 | MS.gene90691:CDS | 20.0% |
| !! | ATACTACAATTTGGAAAAAT+CGG | + | chr1.4:1923768-1923787 | MS.gene90691:CDS | 20.0% |
| !! | GAAAAAGTTATACTACAATT+TGG | + | chr1.4:1923759-1923778 | MS.gene90691:CDS | 20.0% |
| !! | TAATCATTAAGCAAAATAAC+AGG | + | chr1.4:1923226-1923245 | MS.gene90691:intron | 20.0% |
| !! | TACTATTAGACATAATTCAA+AGG | + | chr1.4:1922302-1922321 | MS.gene90691:CDS | 20.0% |
| !!! | CACAGAATTTTTAATATCAT+TGG | + | chr1.4:1923092-1923111 | MS.gene90691:CDS | 20.0% |
| !!! | TGTAATTTTTGTTTTAAGCT+TGG | + | chr1.4:1922508-1922527 | MS.gene90691:intron | 20.0% |
| !!! | TTTGGTAACAAAATTTTGTT+TGG | + | chr1.4:1922711-1922730 | MS.gene90691:intron | 20.0% |
| !!! | TTTTTTTAGTCTTTGAACTA+TGG | + | chr1.4:1922918-1922937 | MS.gene90691:intron | 20.0% |
| ! | ACCAAGATATAAACTATATG+TGG | - | chr1.4:1922646-1922665 | None:intergenic | 25.0% |
| ! | ATACTTACATTGGAAAGTTA+AGG | + | chr1.4:1923142-1923161 | MS.gene90691:CDS | 25.0% |
| ! | ATTATGTCTAATAGTAACTC+AGG | - | chr1.4:1922298-1922317 | None:intergenic | 25.0% |
| ! | CTCTTAATAAAACACTGAAT+TGG | - | chr1.4:1922609-1922628 | None:intergenic | 25.0% |
| ! | GTTCAAAGACTAAAAAAAGA+AGG | - | chr1.4:1922916-1922935 | None:intergenic | 25.0% |
| ! | TACTACAATTTGGAAAAATC+GGG | + | chr1.4:1923769-1923788 | MS.gene90691:CDS | 25.0% |
| ! | TCCACATATAGTTTATATCT+TGG | + | chr1.4:1922642-1922661 | MS.gene90691:CDS | 25.0% |
| !! | AACTTGAATTACCTTCTTTT+AGG | + | chr1.4:1922793-1922812 | MS.gene90691:intron | 25.0% |
| !! | AATAACAGGTCTAATTTTCT+CGG | + | chr1.4:1923240-1923259 | MS.gene90691:intron | 25.0% |
| !!! | AGTGTTTTATTAAGAGAGAA+AGG | + | chr1.4:1922613-1922632 | MS.gene90691:CDS | 25.0% |
| !!! | ATTGATTTGTAAGTTTACTC+TGG | - | chr1.4:1922867-1922886 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTAAGAGAGAAA+GGG | + | chr1.4:1922614-1922633 | MS.gene90691:CDS | 25.0% |
| AGAGCTAACAATACTTACAT+TGG | + | chr1.4:1923132-1923151 | MS.gene90691:CDS | 30.0% | |
| ATTAGACATAATTCAAAGGG+TGG | + | chr1.4:1922306-1922325 | MS.gene90691:CDS | 30.0% | |
| ATTATGGAGAGACATAACAA+AGG | + | chr1.4:1922390-1922409 | MS.gene90691:CDS | 30.0% | |
| CACAAATCGAGAATAGTTAA+CGG | - | chr1.4:1922960-1922979 | None:intergenic | 30.0% | |
| TTATGGAGAGACATAACAAA+GGG | + | chr1.4:1922391-1922410 | MS.gene90691:CDS | 30.0% | |
| ! | AATCAATCCACATCTTTTCA+TGG | + | chr1.4:1923176-1923195 | MS.gene90691:intron | 30.0% |
| ! | ATGTTGGTGTTTGAATTTCA+AGG | + | chr1.4:1923653-1923672 | MS.gene90691:CDS | 30.0% |
| ! | TAACTATTCTCGATTTGTGA+AGG | + | chr1.4:1922961-1922980 | MS.gene90691:intron | 30.0% |
| ! | TGTTGGTGTTTGAATTTCAA+GGG | + | chr1.4:1923654-1923673 | MS.gene90691:CDS | 30.0% |
| !!! | GCTTTGTTTTTCAAAATCAG+AGG | - | chr1.4:1923609-1923628 | None:intergenic | 30.0% |
| AAGCCAGAAGTTGTTGAATT+TGG | + | chr1.4:1923555-1923574 | MS.gene90691:CDS | 35.0% | |
| ACAATTTGGAAAAATCGGGA+AGG | + | chr1.4:1923773-1923792 | MS.gene90691:CDS | 35.0% | |
| ACTAAGCTTATGCATAGACA+TGG | + | chr1.4:1922181-1922200 | MS.gene90691:CDS | 35.0% | |
| ATATGAAGCAAGTACTTCCA+AGG | + | chr1.4:1923343-1923362 | MS.gene90691:CDS | 35.0% | |
| ATGTCTAATAGTAACTCAGG+AGG | - | chr1.4:1922295-1922314 | None:intergenic | 35.0% | |
| ATTACCTGCTTCAGTGATAT+AGG | - | chr1.4:1922457-1922476 | None:intergenic | 35.0% | |
| ATTGGCAACATGTATAGAAG+AGG | + | chr1.4:1922151-1922170 | MS.gene90691:CDS | 35.0% | |
| ATTGTATTTGCAGCTCTTTC+TGG | + | chr1.4:1923018-1923037 | MS.gene90691:intron | 35.0% | |
| GCATTAACCATGAAAAGATG+TGG | - | chr1.4:1923186-1923205 | None:intergenic | 35.0% | |
| TATGAAGCAAGTACTTCCAA+GGG | + | chr1.4:1923344-1923363 | MS.gene90691:CDS | 35.0% | |
| TCTCCATAATCTACAAACTG+AGG | - | chr1.4:1922380-1922399 | None:intergenic | 35.0% | |
| TCTCTCACAATACTCTTGAA+AGG | - | chr1.4:1922109-1922128 | None:intergenic | 35.0% | |
| TGATATGAGCAAACTTCTCT+TGG | + | chr1.4:1923041-1923060 | MS.gene90691:CDS | 35.0% | |
| TGGCAATTGGTAAATTCCAT+AGG | - | chr1.4:1923507-1923526 | None:intergenic | 35.0% | |
| TTACCTGCTTCAGTGATATA+GGG | - | chr1.4:1922456-1922475 | None:intergenic | 35.0% | |
| TTGGTAAATTCCATAGGAGT+AGG | - | chr1.4:1923501-1923520 | None:intergenic | 35.0% | |
| ! | GAAAAGATGTGGATTGATTG+AGG | - | chr1.4:1923175-1923194 | None:intergenic | 35.0% |
| ! | TGAAAAACAAAGCACCAAGA+TGG | + | chr1.4:1923616-1923635 | MS.gene90691:CDS | 35.0% |
| !! | GTTGCTACTTTATAGTTAGC+AGG | - | chr1.4:1923375-1923394 | None:intergenic | 35.0% |
| !! | GTTTTAAGCTTGGAAGAACA+TGG | + | chr1.4:1922518-1922537 | MS.gene90691:intron | 35.0% |
| !! | TTGGAAGTACTTGCTTCATA+TGG | - | chr1.4:1923344-1923363 | None:intergenic | 35.0% |
| AAGGAGATGAAAGAGGGAAT+TGG | + | chr1.4:1922133-1922152 | MS.gene90691:CDS | 40.0% | |
| AAGTTGCAAGTTGCAGCAAA+AGG | + | chr1.4:1923317-1923336 | MS.gene90691:CDS | 40.0% | |
| ACCAAGTTCACGATCTTAGA+TGG | + | chr1.4:1923264-1923283 | MS.gene90691:CDS | 40.0% | |
| ACCATCATCAGAGAGTCAAT+GGG | + | chr1.4:1922261-1922280 | MS.gene90691:CDS | 40.0% | |
| AGAGATGAAGGAGATGAAAG+AGG | + | chr1.4:1922126-1922145 | MS.gene90691:CDS | 40.0% | |
| ATATCTTCAGTCCAAGAAGG+AGG | + | chr1.4:1923468-1923487 | MS.gene90691:CDS | 40.0% | |
| CACTGAATTGGATTGTCTCT+TGG | - | chr1.4:1922597-1922616 | None:intergenic | 40.0% | |
| CCTTCTTGGACTGAAGATAT+GGG | - | chr1.4:1923468-1923487 | None:intergenic | 40.0% | |
| CTTCTTGGACTGAAGATATG+GGG | - | chr1.4:1923467-1923486 | None:intergenic | 40.0% | |
| GAGAGGATATCGATAATCCA+TGG | - | chr1.4:1923808-1923827 | None:intergenic | 40.0% | |
| GAGATGAAGGAGATGAAAGA+GGG | + | chr1.4:1922127-1922146 | MS.gene90691:CDS | 40.0% | |
| GAGCCAAATTCAACAACTTC+TGG | - | chr1.4:1923561-1923580 | None:intergenic | 40.0% | |
| GATATTGGTGAGGAACATTC+TGG | - | chr1.4:1922223-1922242 | None:intergenic | 40.0% | |
| GGTGTTTGAATTTCAAGGGA+CGG | + | chr1.4:1923658-1923677 | MS.gene90691:CDS | 40.0% | |
| GTGCCTCAGTTTGTAGATTA+TGG | + | chr1.4:1922374-1922393 | MS.gene90691:CDS | 40.0% | |
| GTGTTTGAATTTCAAGGGAC+GGG | + | chr1.4:1923659-1923678 | MS.gene90691:CDS | 40.0% | |
| GTTAAGACACTTGAACAGTG+TGG | + | chr1.4:1922418-1922437 | MS.gene90691:CDS | 40.0% | |
| TCCTTCTTGGACTGAAGATA+TGG | - | chr1.4:1923469-1923488 | None:intergenic | 40.0% | |
| TGAGCACAACAATCTTACCA+GGG | - | chr1.4:1922674-1922693 | None:intergenic | 40.0% | |
| TTATATCTTGGTCTAAGCCC+TGG | + | chr1.4:1922654-1922673 | MS.gene90691:CDS | 40.0% | |
| TTCATGCTCATTGTGGCAAT+TGG | - | chr1.4:1923520-1923539 | None:intergenic | 40.0% | |
| TTGCAGATTCATGCTCATTG+TGG | - | chr1.4:1923527-1923546 | None:intergenic | 40.0% | |
| TTTCCCTATATCACTGAAGC+AGG | + | chr1.4:1922450-1922469 | MS.gene90691:CDS | 40.0% | |
| ! | ACCATCTAAGATCGTGAACT+TGG | - | chr1.4:1923268-1923287 | None:intergenic | 40.0% |
| ! | GAGTATTGTGAGAGAGATGA+AGG | + | chr1.4:1922114-1922133 | MS.gene90691:CDS | 40.0% |
| ! | GTTCTGCAGCTGAAACATTT+TGG | - | chr1.4:1923737-1923756 | None:intergenic | 40.0% |
| ! | TGCTGATAGTGATATTGGTG+AGG | - | chr1.4:1922233-1922252 | None:intergenic | 40.0% |
| !! | GTTGGTGCTGATAGTGATAT+TGG | - | chr1.4:1922238-1922257 | None:intergenic | 40.0% |
| AAGGCTTGAAAAGCAGAGAG+AGG | - | chr1.4:1923825-1923844 | None:intergenic | 45.0% | |
| ATTGGATTGTCTCTTGGAGC+AGG | - | chr1.4:1922591-1922610 | None:intergenic | 45.0% | |
| CACCATCATCAGAGAGTCAA+TGG | + | chr1.4:1922260-1922279 | MS.gene90691:CDS | 45.0% | |
| CCCATATCTTCAGTCCAAGA+AGG | + | chr1.4:1923465-1923484 | MS.gene90691:CDS | 45.0% | |
| CTCAATGTTCTTCGTACGAG+AGG | + | chr1.4:1923408-1923427 | MS.gene90691:CDS | 45.0% | |
| GATGGAAGCGAAGAAACATG+TGG | - | chr1.4:1923297-1923316 | None:intergenic | 45.0% | |
| GCTGCTCAAACAGATTGCAA+AGG | - | chr1.4:1923844-1923863 | None:intergenic | 45.0% | |
| GGCATGAACAACTGCAATGT+TGG | + | chr1.4:1923637-1923656 | MS.gene90691:CDS | 45.0% | |
| GTGAGCACAACAATCTTACC+AGG | - | chr1.4:1922675-1922694 | None:intergenic | 45.0% | |
| TGCAGTTGTTCATGCCATCT+TGG | - | chr1.4:1923633-1923652 | None:intergenic | 45.0% | |
| TGCTGCAACTTGCAACTTGA+TGG | - | chr1.4:1923315-1923334 | None:intergenic | 45.0% | |
| TGGAAGCTAGTGAAACCACT+TGG | + | chr1.4:1922326-1922345 | MS.gene90691:CDS | 45.0% | |
| !! | CTCTCTGATGATGGTGTTGT+TGG | - | chr1.4:1922256-1922275 | None:intergenic | 45.0% |
| !!! | GCAGCTGAAACATTTTGGCT+AGG | - | chr1.4:1923732-1923751 | None:intergenic | 45.0% |
| AGACACTTGAACAGTGTGGC+TGG | + | chr1.4:1922422-1922441 | MS.gene90691:CDS | 50.0% | |
| AGGAACTGCTCCTACTCCTA+TGG | + | chr1.4:1923488-1923507 | MS.gene90691:CDS | 50.0% | |
| AGGCACAAGCTACAAGTGCT+CGG | - | chr1.4:1922360-1922379 | None:intergenic | 50.0% | |
| ATTGTACTCCGCATTCGCCT+TGG | - | chr1.4:1923435-1923454 | None:intergenic | 50.0% | |
| CGGGAAGGACATATTCACCA+TGG | + | chr1.4:1923788-1923807 | MS.gene90691:CDS | 50.0% | |
| GGAAGCGAAGAAACATGTGG+AGG | - | chr1.4:1923294-1923313 | None:intergenic | 50.0% | |
| TAGGAGCAGTTCCTCCTTCT+TGG | - | chr1.4:1923482-1923501 | None:intergenic | 50.0% | |
| TTCTTCGTACGAGAGGTCCA+AGG | + | chr1.4:1923415-1923434 | MS.gene90691:CDS | 50.0% | |
| !! | GCCCATTGACTCTCTGATGA+TGG | - | chr1.4:1922265-1922284 | None:intergenic | 50.0% |
| !! | TTTCAAGGGACGGGTTACAG+TGG | + | chr1.4:1923668-1923687 | MS.gene90691:CDS | 50.0% |
| TAGTTAGCAGGAGCAGCCCT+TGG | - | chr1.4:1923363-1923382 | None:intergenic | 55.0% | |
| CGAGAGGTCCAAGGCGAATG+CGG | + | chr1.4:1923424-1923443 | MS.gene90691:CDS | 60.0% | |
| GCTACAAGTGCTCGGCGAGA+TGG | - | chr1.4:1922352-1922371 | None:intergenic | 60.0% | |
| !! | GGGACGGGTTACAGTGGCTT+CGG | + | chr1.4:1923674-1923693 | MS.gene90691:CDS | 60.0% |
| TGCTCGGCGAGATGGCCAAG+TGG | - | chr1.4:1922344-1922363 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1922103 | 1923890 | 1922103 | ID=MS.gene90691 |
| chr1.4 | mRNA | 1922103 | 1923890 | 1922103 | ID=MS.gene90691.t1;Parent=MS.gene90691 |
| chr1.4 | exon | 1922103 | 1922471 | 1922103 | ID=MS.gene90691.t1.exon1;Parent=MS.gene90691.t1 |
| chr1.4 | CDS | 1922103 | 1922471 | 1922103 | ID=cds.MS.gene90691.t1;Parent=MS.gene90691.t1 |
| chr1.4 | exon | 1922588 | 1922675 | 1922588 | ID=MS.gene90691.t1.exon2;Parent=MS.gene90691.t1 |
| chr1.4 | CDS | 1922588 | 1922675 | 1922588 | ID=cds.MS.gene90691.t1;Parent=MS.gene90691.t1 |
| chr1.4 | exon | 1923031 | 1923163 | 1923031 | ID=MS.gene90691.t1.exon3;Parent=MS.gene90691.t1 |
| chr1.4 | CDS | 1923031 | 1923163 | 1923031 | ID=cds.MS.gene90691.t1;Parent=MS.gene90691.t1 |
| chr1.4 | exon | 1923248 | 1923890 | 1923248 | ID=MS.gene90691.t1.exon4;Parent=MS.gene90691.t1 |
| chr1.4 | CDS | 1923248 | 1923890 | 1923248 | ID=cds.MS.gene90691.t1;Parent=MS.gene90691.t1 |
| Gene Sequence |
| Protein sequence |
