Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26978.t1 | XP_013466123.1 | 93.7 | 413 | 17 | 2 | 1 | 404 | 10 | 422 | 6.40E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26978.t1 | Q6Z2G9 | 60.8 | 424 | 141 | 7 | 1 | 404 | 10 | 428 | 5.8e-137 | 488.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26978.t1 | A0A072VEB5 | 93.7 | 413 | 17 | 2 | 1 | 404 | 10 | 422 | 4.6e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene26978.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010525 | MS.gene26978 | PPI |
| MS.gene87465 | MS.gene26978 | PPI |
| MS.gene02465 | MS.gene26978 | PPI |
| MS.gene26978 | MS.gene02443 | PPI |
| MS.gene26978 | MS.gene59384 | PPI |
| MS.gene26978 | MS.gene012024 | PPI |
| MS.gene76417 | MS.gene26978 | PPI |
| MS.gene02475 | MS.gene26978 | PPI |
| MS.gene02464 | MS.gene26978 | PPI |
| MS.gene010523 | MS.gene26978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26978.t1 | MTR_1g022370 | 95.884 | 413 | 8 | 2 | 1 | 404 | 10 | 422 | 0.0 | 819 |
| MS.gene26978.t1 | MTR_5g020580 | 62.500 | 416 | 135 | 5 | 1 | 404 | 10 | 416 | 0.0 | 524 |
| MS.gene26978.t1 | MTR_8g077195 | 60.000 | 415 | 143 | 5 | 1 | 404 | 10 | 412 | 1.25e-172 | 488 |
| MS.gene26978.t1 | MTR_2g020280 | 58.743 | 366 | 141 | 4 | 46 | 404 | 31 | 393 | 8.29e-148 | 425 |
| MS.gene26978.t1 | MTR_1g098790 | 48.874 | 444 | 168 | 8 | 1 | 404 | 7 | 431 | 4.89e-144 | 417 |
| MS.gene26978.t1 | MTR_2g007930 | 50.694 | 432 | 174 | 8 | 1 | 404 | 7 | 427 | 1.22e-143 | 416 |
| MS.gene26978.t1 | MTR_1g088960 | 50.868 | 403 | 181 | 6 | 11 | 404 | 8 | 402 | 2.41e-136 | 396 |
| MS.gene26978.t1 | MTR_2g076200 | 49.860 | 357 | 158 | 4 | 48 | 404 | 36 | 371 | 8.02e-122 | 358 |
| MS.gene26978.t1 | MTR_2g020280 | 58.249 | 297 | 114 | 4 | 115 | 404 | 1 | 294 | 7.33e-117 | 342 |
| MS.gene26978.t1 | MTR_8g077675 | 47.932 | 411 | 175 | 11 | 1 | 397 | 10 | 395 | 3.32e-114 | 339 |
| MS.gene26978.t1 | MTR_8g077620 | 47.382 | 401 | 179 | 10 | 1 | 395 | 10 | 384 | 6.13e-114 | 338 |
| MS.gene26978.t1 | MTR_2g076210 | 45.205 | 365 | 174 | 10 | 43 | 404 | 26 | 367 | 3.29e-95 | 290 |
| MS.gene26978.t1 | MTR_1g023800 | 88.079 | 151 | 7 | 1 | 1 | 151 | 10 | 149 | 1.11e-91 | 273 |
| MS.gene26978.t1 | MTR_8g077650 | 41.555 | 373 | 157 | 11 | 43 | 401 | 8 | 333 | 2.73e-78 | 245 |
| MS.gene26978.t1 | MTR_8g077640 | 41.500 | 400 | 155 | 13 | 2 | 394 | 56 | 383 | 2.46e-72 | 231 |
| MS.gene26978.t1 | MTR_0210s0010 | 45.833 | 96 | 45 | 2 | 99 | 194 | 11 | 99 | 4.78e-17 | 76.6 |
| MS.gene26978.t1 | MTR_2g105390 | 28.223 | 287 | 128 | 15 | 134 | 403 | 134 | 359 | 2.27e-14 | 74.3 |
| MS.gene26978.t1 | MTR_0479s0040 | 50.000 | 70 | 28 | 2 | 113 | 182 | 12 | 74 | 3.24e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26978.t1 | AT1G47270 | 61.069 | 393 | 130 | 6 | 19 | 404 | 12 | 388 | 1.50e-165 | 469 |
| MS.gene26978.t1 | AT1G47270 | 61.069 | 393 | 130 | 6 | 19 | 404 | 37 | 413 | 1.62e-165 | 471 |
| MS.gene26978.t1 | AT1G47270 | 61.069 | 393 | 130 | 6 | 19 | 404 | 36 | 412 | 3.02e-165 | 470 |
| MS.gene26978.t1 | AT2G18280 | 55.637 | 408 | 153 | 6 | 1 | 404 | 10 | 393 | 1.75e-152 | 437 |
| MS.gene26978.t1 | AT2G18280 | 55.637 | 408 | 153 | 6 | 1 | 404 | 10 | 393 | 1.75e-152 | 437 |
| MS.gene26978.t1 | AT2G47900 | 51.220 | 410 | 184 | 3 | 1 | 404 | 7 | 406 | 7.50e-146 | 420 |
| MS.gene26978.t1 | AT2G47900 | 51.220 | 410 | 184 | 3 | 1 | 404 | 7 | 406 | 7.50e-146 | 420 |
| MS.gene26978.t1 | AT2G47900 | 51.095 | 411 | 184 | 4 | 1 | 404 | 7 | 407 | 4.15e-144 | 416 |
| MS.gene26978.t1 | AT1G25280 | 49.661 | 443 | 180 | 7 | 1 | 404 | 7 | 445 | 9.21e-141 | 409 |
| MS.gene26978.t1 | AT1G76900 | 48.253 | 458 | 174 | 7 | 1 | 404 | 7 | 455 | 3.86e-137 | 400 |
| MS.gene26978.t1 | AT1G76900 | 48.253 | 458 | 174 | 7 | 1 | 404 | 7 | 455 | 3.86e-137 | 400 |
| MS.gene26978.t1 | AT1G76900 | 48.253 | 458 | 174 | 7 | 1 | 404 | 7 | 455 | 3.86e-137 | 400 |
| MS.gene26978.t1 | AT1G43640 | 45.517 | 435 | 194 | 7 | 1 | 404 | 7 | 429 | 7.62e-126 | 370 |
| MS.gene26978.t1 | AT3G06380 | 51.220 | 369 | 167 | 5 | 41 | 404 | 20 | 380 | 9.14e-126 | 368 |
| MS.gene26978.t1 | AT5G18680 | 51.220 | 369 | 160 | 8 | 46 | 404 | 31 | 389 | 6.76e-121 | 356 |
| MS.gene26978.t1 | AT1G53320 | 47.970 | 394 | 183 | 6 | 14 | 404 | 5 | 379 | 9.24e-121 | 355 |
| MS.gene26978.t1 | AT1G43640 | 49.727 | 366 | 154 | 5 | 66 | 404 | 1 | 363 | 2.23e-118 | 349 |
| MS.gene26978.t1 | AT3G06380 | 51.370 | 292 | 130 | 4 | 117 | 404 | 5 | 288 | 6.36e-101 | 301 |
| MS.gene26978.t1 | AT5G18680 | 50.820 | 305 | 131 | 7 | 109 | 404 | 3 | 297 | 3.13e-97 | 292 |
| MS.gene26978.t1 | AT1G25280 | 51.311 | 267 | 94 | 4 | 174 | 404 | 1 | 267 | 2.30e-85 | 261 |
| MS.gene26978.t1 | AT1G25280 | 51.311 | 267 | 94 | 4 | 174 | 404 | 1 | 267 | 2.30e-85 | 261 |
| MS.gene26978.t1 | AT1G61940 | 52.874 | 87 | 41 | 0 | 57 | 143 | 1 | 87 | 1.78e-25 | 104 |
| MS.gene26978.t1 | AT1G61940 | 55.738 | 61 | 27 | 0 | 57 | 117 | 1 | 61 | 4.62e-15 | 74.7 |
Find 81 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTATTTGCAGCTCTTTC+TGG | 0.147891 | 1.3:+2615589 | MS.gene26978:intron |
| AAGCCAGAAGTTGTTGAATT+TGG | 0.203153 | 1.3:+2616126 | MS.gene26978:CDS |
| GTGCCTCAGTTTGTAGATTA+TGG | 0.216681 | 1.3:+2614949 | MS.gene26978:CDS |
| GTTCTGCAGCTGAAACATTT+TGG | 0.237846 | 1.3:-2616305 | None:intergenic |
| TAGGAGCAGTTCCTCCTTCT+TGG | 0.256813 | 1.3:-2616050 | None:intergenic |
| TCCTTCTTGGACTGAAGATA+TGG | 0.272539 | 1.3:-2616037 | None:intergenic |
| GAGCCAAATTCAACAACTTC+TGG | 0.280199 | 1.3:-2616129 | None:intergenic |
| ATTACCTGCTTCAGTGATAT+AGG | 0.293400 | 1.3:-2615029 | None:intergenic |
| TGCTGCAACTTGCAACTTGA+TGG | 0.318405 | 1.3:-2615883 | None:intergenic |
| TCCACATATAGTTTATATCT+TGG | 0.326644 | 1.3:+2615217 | MS.gene26978:CDS |
| CACTGAATTGGATTGTCTCT+TGG | 0.352418 | 1.3:-2615169 | None:intergenic |
| TTGGAAGTACTTGCTTCATA+TGG | 0.387123 | 1.3:-2615912 | None:intergenic |
| CTCTTAATAAAACACTGAAT+TGG | 0.391494 | 1.3:-2615181 | None:intergenic |
| ATACTTACATTGGAAAGTTA+AGG | 0.392067 | 1.3:+2615713 | MS.gene26978:CDS |
| TTCATGCTCATTGTGGCAAT+TGG | 0.398540 | 1.3:-2616088 | None:intergenic |
| GTTGGTGCTGATAGTGATAT+TGG | 0.400859 | 1.3:-2614801 | None:intergenic |
| TTACCTGCTTCAGTGATATA+GGG | 0.408155 | 1.3:-2615028 | None:intergenic |
| ACCAAGTTCACGATCTTAGA+TGG | 0.416091 | 1.3:+2615835 | MS.gene26978:CDS |
| CATCATCATCAGAGAGTCAA+TGG | 0.430216 | 1.3:+2614835 | MS.gene26978:CDS |
| TGCAGTTGTTCATGCCATCT+TGG | 0.442171 | 1.3:-2616201 | None:intergenic |
| GATGATGATGATGGTGTTGT+TGG | 0.443322 | 1.3:-2614819 | None:intergenic |
| CCTTCTTGGACTGAAGATAT+GGG | 0.443500 | 1.3:-2616036 | None:intergenic |
| GTTGCTACTTTATAGTTAGC+AGG | 0.444061 | 1.3:-2615943 | None:intergenic |
| ACCATCTAAGATCGTGAACT+TGG | 0.451643 | 1.3:-2615836 | None:intergenic |
| AAGGAGATGAAAGAGGGAAT+TGG | 0.461217 | 1.3:+2614699 | MS.gene26978:CDS |
| GATATTGGTGAGGAACATTC+TGG | 0.475287 | 1.3:-2614786 | None:intergenic |
| ATTGGATTGTCTCTTGGAGC+AGG | 0.482570 | 1.3:-2615163 | None:intergenic |
| GGGACGGGTTACAGTGGCTT+CGG | 0.485242 | 1.3:+2616245 | MS.gene26978:CDS |
| AGGAACTGCTCCTACTCCTA+TGG | 0.485778 | 1.3:+2616059 | MS.gene26978:CDS |
| GAGATGAAGGAGATGAAAGA+GGG | 0.489271 | 1.3:+2614693 | None:intergenic |
| GTGTTTGAATTTCAAGGGAC+GGG | 0.490017 | 1.3:+2616230 | MS.gene26978:CDS |
| AGGAGTTATCATTCACAAGC+TGG | 0.492801 | 1.3:-2616447 | None:intergenic |
| AAGTTGCAAGTTGCAGCAAA+AGG | 0.503666 | 1.3:+2615888 | MS.gene26978:CDS |
| TGATATGAGCAAACTTCTCT+TGG | 0.505017 | 1.3:+2615612 | MS.gene26978:CDS |
| TTATATCTTGGTCTAAGCCC+TGG | 0.508714 | 1.3:+2615229 | MS.gene26978:CDS |
| AGAGATGAAGGAGATGAAAG+AGG | 0.511465 | 1.3:+2614692 | None:intergenic |
| AGACACTTGAACAGTGTGGC+TGG | 0.511733 | 1.3:+2614997 | MS.gene26978:CDS |
| TAGTTAGCAGGAGCAGCCCT+TGG | 0.515473 | 1.3:-2615931 | None:intergenic |
| ACTATTAGACATAATTCAAA+GGG | 0.516941 | 1.3:+2614878 | MS.gene26978:CDS |
| ACCAAGATATAAACTATATG+TGG | 0.517704 | 1.3:-2615218 | None:intergenic |
| ATTGTACTCCGCATTCGCCT+TGG | 0.518756 | 1.3:-2616003 | None:intergenic |
| GGTGTTTGAATTTCAAGGGA+CGG | 0.518832 | 1.3:+2616229 | MS.gene26978:CDS |
| TTATGGAGAGACATAACAAA+GGG | 0.526760 | 1.3:+2614966 | MS.gene26978:CDS |
| AGAGCTAACAATACTTACAT+TGG | 0.531671 | 1.3:+2615703 | MS.gene26978:CDS |
| TGGCAATTGGTAAATTCCAT+AGG | 0.538026 | 1.3:-2616075 | None:intergenic |
| TTTCCCTATATCACTGAAGC+AGG | 0.541444 | 1.3:+2615025 | MS.gene26978:CDS |
| ATGTTGGTGTTTGAATTTCA+AGG | 0.542716 | 1.3:+2616224 | MS.gene26978:CDS |
| TTGGTAAATTCCATAGGAGT+AGG | 0.543440 | 1.3:-2616069 | None:intergenic |
| TACTATTAGACATAATTCAA+AGG | 0.554134 | 1.3:+2614877 | MS.gene26978:CDS |
| ATATGAAGCAAGTACTTCCA+AGG | 0.555692 | 1.3:+2615914 | MS.gene26978:CDS |
| ATTATGTCTAATAGTAACTC+AGG | 0.562516 | 1.3:-2614870 | None:intergenic |
| TGTTGGTGTTTGAATTTCAA+GGG | 0.562671 | 1.3:+2616225 | MS.gene26978:CDS |
| ATCATCATCAGAGAGTCAAT+GGG | 0.565599 | 1.3:+2614836 | MS.gene26978:CDS |
| GCTACAAGTGCTCGGCGAGA+TGG | 0.582646 | 1.3:-2614924 | None:intergenic |
| TTGCAGATTCATGCTCATTG+TGG | 0.583392 | 1.3:-2616095 | None:intergenic |
| CCCATATCTTCAGTCCAAGA+AGG | 0.587259 | 1.3:+2616036 | MS.gene26978:CDS |
| CTCAATGTTCTTCGTACGAG+AGG | 0.595127 | 1.3:+2615979 | MS.gene26978:CDS |
| GGCATGAACAACTGCAATGT+TGG | 0.599403 | 1.3:+2616208 | MS.gene26978:CDS |
| GAGAGGATATCGATAATCCA+TGG | 0.599763 | 1.3:-2616376 | None:intergenic |
| CTTCTTGGACTGAAGATATG+GGG | 0.599973 | 1.3:-2616035 | None:intergenic |
| CGAGAGGTCCAAGGCGAATG+CGG | 0.601851 | 1.3:+2615995 | MS.gene26978:CDS |
| ATTAGACATAATTCAAAGGG+TGG | 0.608482 | 1.3:+2614881 | MS.gene26978:CDS |
| TTCTTCGTACGAGAGGTCCA+AGG | 0.616949 | 1.3:+2615986 | MS.gene26978:CDS |
| ACTAAGCATATGCATAGACA+TGG | 0.617362 | 1.3:+2614747 | MS.gene26978:CDS |
| GCTGCTCAAACAGATTGCAA+AGG | 0.630739 | 1.3:-2616412 | None:intergenic |
| ATTGGCAACATGTATAGAAG+AGG | 0.636703 | 1.3:+2614717 | MS.gene26978:CDS |
| CGGGAAGGACATATTCACCA+TGG | 0.637363 | 1.3:+2616359 | MS.gene26978:CDS |
| TGGAAGCTAGTGAAACCACT+TGG | 0.639315 | 1.3:+2614901 | MS.gene26978:CDS |
| TTTCAAGGGACGGGTTACAG+TGG | 0.641025 | 1.3:+2616239 | MS.gene26978:CDS |
| AGGCACAAGCTACAAGTGCT+CGG | 0.645228 | 1.3:-2614932 | None:intergenic |
| TATGAAGCAAGTACTTCCAA+GGG | 0.646074 | 1.3:+2615915 | MS.gene26978:CDS |
| ATGTCTAATAGTAACTCAGG+AGG | 0.663267 | 1.3:-2614867 | None:intergenic |
| AAGGCTTGAAAAGCAGAGAG+AGG | 0.664732 | 1.3:-2616393 | None:intergenic |
| ATTATGGAGAGACATAACAA+AGG | 0.674047 | 1.3:+2614965 | MS.gene26978:CDS |
| ATATCTTCAGTCCAAGAAGG+AGG | 0.675556 | 1.3:+2616039 | MS.gene26978:CDS |
| TCTCCATAATCTACAAACTG+AGG | 0.678466 | 1.3:-2614952 | None:intergenic |
| TGCTCGGCGAGATGGCCAAG+TGG | 0.681754 | 1.3:-2614916 | None:intergenic |
| TGCTGATAGTGATATTGGTG+AGG | 0.701371 | 1.3:-2614796 | None:intergenic |
| GATGGAAGCGAAGAAACATG+TGG | 0.713919 | 1.3:-2615865 | None:intergenic |
| GGAAGCGAAGAAACATGTGG+AGG | 0.757377 | 1.3:-2615862 | None:intergenic |
| GTTAAGACACTTGAACAGTG+TGG | 0.757990 | 1.3:+2614993 | MS.gene26978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGCCTAAAAGA+AGG | - | chr1.3:2615382-2615401 | None:intergenic | 20.0% |
| !! | AATAACACAATTCACAAATA+TGG | - | chr1.3:2615572-2615591 | None:intergenic | 20.0% |
| !! | ACATGAAATTATTCTCTATT+TGG | + | chr1.3:2615268-2615287 | MS.gene26978:intron | 20.0% |
| !! | ACTATTAGACATAATTCAAA+GGG | + | chr1.3:2614878-2614897 | MS.gene26978:CDS | 20.0% |
| !! | ATACTACAATTTGGAAAAAT+CGG | + | chr1.3:2616339-2616358 | MS.gene26978:CDS | 20.0% |
| !! | GAAAAAGTTATACTACAATT+TGG | + | chr1.3:2616330-2616349 | MS.gene26978:CDS | 20.0% |
| !! | TAATCATTAAGCAAAATAAC+AGG | + | chr1.3:2615797-2615816 | MS.gene26978:intron | 20.0% |
| !! | TACTATTAGACATAATTCAA+AGG | + | chr1.3:2614877-2614896 | MS.gene26978:CDS | 20.0% |
| !!! | CACAGAATTTTTAATATCAT+TGG | + | chr1.3:2615663-2615682 | MS.gene26978:CDS | 20.0% |
| !!! | TGTAATTTTTGTTTTAAGCT+TGG | + | chr1.3:2615083-2615102 | MS.gene26978:intron | 20.0% |
| !!! | TTTGGTAACAAAATTTTGTT+TGG | + | chr1.3:2615286-2615305 | MS.gene26978:intron | 20.0% |
| !!! | TTTTTTTAGTCTTTGAACTA+TGG | + | chr1.3:2615489-2615508 | MS.gene26978:intron | 20.0% |
| ! | ACCAAGATATAAACTATATG+TGG | - | chr1.3:2615221-2615240 | None:intergenic | 25.0% |
| ! | ATACTTACATTGGAAAGTTA+AGG | + | chr1.3:2615713-2615732 | MS.gene26978:CDS | 25.0% |
| ! | ATTATGTCTAATAGTAACTC+AGG | - | chr1.3:2614873-2614892 | None:intergenic | 25.0% |
| ! | CTCTTAATAAAACACTGAAT+TGG | - | chr1.3:2615184-2615203 | None:intergenic | 25.0% |
| ! | GTTCAAAGACTAAAAAAAGA+AGG | - | chr1.3:2615487-2615506 | None:intergenic | 25.0% |
| ! | TACTACAATTTGGAAAAATC+GGG | + | chr1.3:2616340-2616359 | MS.gene26978:CDS | 25.0% |
| ! | TCCACATATAGTTTATATCT+TGG | + | chr1.3:2615217-2615236 | MS.gene26978:CDS | 25.0% |
| !! | AACTTGAATTACCTTCTTTT+AGG | + | chr1.3:2615368-2615387 | MS.gene26978:intron | 25.0% |
| !! | AATAACAGGTCTAATTTTCT+CGG | + | chr1.3:2615811-2615830 | MS.gene26978:intron | 25.0% |
| !!! | ATTGATTTGTAAGTTTACTC+TGG | - | chr1.3:2615438-2615457 | None:intergenic | 25.0% |
| AGAGCTAACAATACTTACAT+TGG | + | chr1.3:2615703-2615722 | MS.gene26978:CDS | 30.0% | |
| ATTAGACATAATTCAAAGGG+TGG | + | chr1.3:2614881-2614900 | MS.gene26978:CDS | 30.0% | |
| ATTATGGAGAGACATAACAA+AGG | + | chr1.3:2614965-2614984 | MS.gene26978:CDS | 30.0% | |
| CACAAATCGAGAATAGTTAA+CGG | - | chr1.3:2615531-2615550 | None:intergenic | 30.0% | |
| TTATGGAGAGACATAACAAA+GGG | + | chr1.3:2614966-2614985 | MS.gene26978:CDS | 30.0% | |
| ! | AATCAATCCACATCTTTTCA+TGG | + | chr1.3:2615747-2615766 | MS.gene26978:intron | 30.0% |
| ! | ATGTTGGTGTTTGAATTTCA+AGG | + | chr1.3:2616224-2616243 | MS.gene26978:CDS | 30.0% |
| ! | TAACTATTCTCGATTTGTGA+AGG | + | chr1.3:2615532-2615551 | MS.gene26978:intron | 30.0% |
| ! | TGTTGGTGTTTGAATTTCAA+GGG | + | chr1.3:2616225-2616244 | MS.gene26978:CDS | 30.0% |
| !! | AGTGTTTTATTAAGAGAGAG+AGG | + | chr1.3:2615188-2615207 | MS.gene26978:CDS | 30.0% |
| !! | GTGTTTTATTAAGAGAGAGA+GGG | + | chr1.3:2615189-2615208 | MS.gene26978:CDS | 30.0% |
| !!! | GCTTTGTTTTTCAAAATCAG+AGG | - | chr1.3:2616180-2616199 | None:intergenic | 30.0% |
| AAGCCAGAAGTTGTTGAATT+TGG | + | chr1.3:2616126-2616145 | MS.gene26978:CDS | 35.0% | |
| ACAATTTGGAAAAATCGGGA+AGG | + | chr1.3:2616344-2616363 | MS.gene26978:CDS | 35.0% | |
| ACTAAGCATATGCATAGACA+TGG | + | chr1.3:2614747-2614766 | MS.gene26978:CDS | 35.0% | |
| ATATGAAGCAAGTACTTCCA+AGG | + | chr1.3:2615914-2615933 | MS.gene26978:CDS | 35.0% | |
| ATCATCATCAGAGAGTCAAT+GGG | + | chr1.3:2614836-2614855 | MS.gene26978:CDS | 35.0% | |
| ATGTCTAATAGTAACTCAGG+AGG | - | chr1.3:2614870-2614889 | None:intergenic | 35.0% | |
| ATTACCTGCTTCAGTGATAT+AGG | - | chr1.3:2615032-2615051 | None:intergenic | 35.0% | |
| ATTGGCAACATGTATAGAAG+AGG | + | chr1.3:2614717-2614736 | MS.gene26978:CDS | 35.0% | |
| ATTGTATTTGCAGCTCTTTC+TGG | + | chr1.3:2615589-2615608 | MS.gene26978:intron | 35.0% | |
| GCATTAACCATGAAAAGATG+TGG | - | chr1.3:2615757-2615776 | None:intergenic | 35.0% | |
| TATGAAGCAAGTACTTCCAA+GGG | + | chr1.3:2615915-2615934 | MS.gene26978:CDS | 35.0% | |
| TCTCCATAATCTACAAACTG+AGG | - | chr1.3:2614955-2614974 | None:intergenic | 35.0% | |
| TGATATGAGCAAACTTCTCT+TGG | + | chr1.3:2615612-2615631 | MS.gene26978:CDS | 35.0% | |
| TGGCAATTGGTAAATTCCAT+AGG | - | chr1.3:2616078-2616097 | None:intergenic | 35.0% | |
| TTACCTGCTTCAGTGATATA+GGG | - | chr1.3:2615031-2615050 | None:intergenic | 35.0% | |
| TTGGTAAATTCCATAGGAGT+AGG | - | chr1.3:2616072-2616091 | None:intergenic | 35.0% | |
| ! | GAAAAGATGTGGATTGATTG+AGG | - | chr1.3:2615746-2615765 | None:intergenic | 35.0% |
| ! | TGAAAAACAAAGCACCAAGA+TGG | + | chr1.3:2616187-2616206 | MS.gene26978:CDS | 35.0% |
| !! | GTTGCTACTTTATAGTTAGC+AGG | - | chr1.3:2615946-2615965 | None:intergenic | 35.0% |
| !! | GTTTTAAGCTTGGAAGAACA+TGG | + | chr1.3:2615093-2615112 | MS.gene26978:intron | 35.0% |
| !! | TTGGAAGTACTTGCTTCATA+TGG | - | chr1.3:2615915-2615934 | None:intergenic | 35.0% |
| AAGGAGATGAAAGAGGGAAT+TGG | + | chr1.3:2614699-2614718 | MS.gene26978:CDS | 40.0% | |
| AAGTTGCAAGTTGCAGCAAA+AGG | + | chr1.3:2615888-2615907 | MS.gene26978:CDS | 40.0% | |
| ACCAAGTTCACGATCTTAGA+TGG | + | chr1.3:2615835-2615854 | MS.gene26978:CDS | 40.0% | |
| ATATCTTCAGTCCAAGAAGG+AGG | + | chr1.3:2616039-2616058 | MS.gene26978:CDS | 40.0% | |
| CACTGAATTGGATTGTCTCT+TGG | - | chr1.3:2615172-2615191 | None:intergenic | 40.0% | |
| CATCATCATCAGAGAGTCAA+TGG | + | chr1.3:2614835-2614854 | MS.gene26978:CDS | 40.0% | |
| CCTTCTTGGACTGAAGATAT+GGG | - | chr1.3:2616039-2616058 | None:intergenic | 40.0% | |
| CTTCTTGGACTGAAGATATG+GGG | - | chr1.3:2616038-2616057 | None:intergenic | 40.0% | |
| GAGAGGATATCGATAATCCA+TGG | - | chr1.3:2616379-2616398 | None:intergenic | 40.0% | |
| GAGCCAAATTCAACAACTTC+TGG | - | chr1.3:2616132-2616151 | None:intergenic | 40.0% | |
| GATATTGGTGAGGAACATTC+TGG | - | chr1.3:2614789-2614808 | None:intergenic | 40.0% | |
| GGTGTTTGAATTTCAAGGGA+CGG | + | chr1.3:2616229-2616248 | MS.gene26978:CDS | 40.0% | |
| GTGCCTCAGTTTGTAGATTA+TGG | + | chr1.3:2614949-2614968 | MS.gene26978:CDS | 40.0% | |
| GTGTTTGAATTTCAAGGGAC+GGG | + | chr1.3:2616230-2616249 | MS.gene26978:CDS | 40.0% | |
| GTTAAGACACTTGAACAGTG+TGG | + | chr1.3:2614993-2615012 | MS.gene26978:CDS | 40.0% | |
| TCCTTCTTGGACTGAAGATA+TGG | - | chr1.3:2616040-2616059 | None:intergenic | 40.0% | |
| TGAGCACAACAATCTTACCA+GGG | - | chr1.3:2615249-2615268 | None:intergenic | 40.0% | |
| TTATATCTTGGTCTAAGCCC+TGG | + | chr1.3:2615229-2615248 | MS.gene26978:CDS | 40.0% | |
| TTCATGCTCATTGTGGCAAT+TGG | - | chr1.3:2616091-2616110 | None:intergenic | 40.0% | |
| TTGCAGATTCATGCTCATTG+TGG | - | chr1.3:2616098-2616117 | None:intergenic | 40.0% | |
| TTTCCCTATATCACTGAAGC+AGG | + | chr1.3:2615025-2615044 | MS.gene26978:CDS | 40.0% | |
| ! | ACCATCTAAGATCGTGAACT+TGG | - | chr1.3:2615839-2615858 | None:intergenic | 40.0% |
| ! | CTCTCTGATGATGATGATGA+TGG | - | chr1.3:2614831-2614850 | None:intergenic | 40.0% |
| ! | GTTCTGCAGCTGAAACATTT+TGG | - | chr1.3:2616308-2616327 | None:intergenic | 40.0% |
| ! | TGCTGATAGTGATATTGGTG+AGG | - | chr1.3:2614799-2614818 | None:intergenic | 40.0% |
| !! | GATGATGATGATGGTGTTGT+TGG | - | chr1.3:2614822-2614841 | None:intergenic | 40.0% |
| !! | GTTGGTGCTGATAGTGATAT+TGG | - | chr1.3:2614804-2614823 | None:intergenic | 40.0% |
| AAGGCTTGAAAAGCAGAGAG+AGG | - | chr1.3:2616396-2616415 | None:intergenic | 45.0% | |
| ATTGGATTGTCTCTTGGAGC+AGG | - | chr1.3:2615166-2615185 | None:intergenic | 45.0% | |
| CCCATATCTTCAGTCCAAGA+AGG | + | chr1.3:2616036-2616055 | MS.gene26978:CDS | 45.0% | |
| CTCAATGTTCTTCGTACGAG+AGG | + | chr1.3:2615979-2615998 | MS.gene26978:CDS | 45.0% | |
| GATGGAAGCGAAGAAACATG+TGG | - | chr1.3:2615868-2615887 | None:intergenic | 45.0% | |
| GCTGCTCAAACAGATTGCAA+AGG | - | chr1.3:2616415-2616434 | None:intergenic | 45.0% | |
| GGCATGAACAACTGCAATGT+TGG | + | chr1.3:2616208-2616227 | MS.gene26978:CDS | 45.0% | |
| GTGAGCACAACAATCTTACC+AGG | - | chr1.3:2615250-2615269 | None:intergenic | 45.0% | |
| TGCAGTTGTTCATGCCATCT+TGG | - | chr1.3:2616204-2616223 | None:intergenic | 45.0% | |
| TGCTGCAACTTGCAACTTGA+TGG | - | chr1.3:2615886-2615905 | None:intergenic | 45.0% | |
| TGGAAGCTAGTGAAACCACT+TGG | + | chr1.3:2614901-2614920 | MS.gene26978:CDS | 45.0% | |
| !!! | GCAGCTGAAACATTTTGGCT+AGG | - | chr1.3:2616303-2616322 | None:intergenic | 45.0% |
| AGACACTTGAACAGTGTGGC+TGG | + | chr1.3:2614997-2615016 | MS.gene26978:CDS | 50.0% | |
| AGGAACTGCTCCTACTCCTA+TGG | + | chr1.3:2616059-2616078 | MS.gene26978:CDS | 50.0% | |
| AGGCACAAGCTACAAGTGCT+CGG | - | chr1.3:2614935-2614954 | None:intergenic | 50.0% | |
| ATTGTACTCCGCATTCGCCT+TGG | - | chr1.3:2616006-2616025 | None:intergenic | 50.0% | |
| CGGGAAGGACATATTCACCA+TGG | + | chr1.3:2616359-2616378 | MS.gene26978:CDS | 50.0% | |
| GGAAGCGAAGAAACATGTGG+AGG | - | chr1.3:2615865-2615884 | None:intergenic | 50.0% | |
| TAGGAGCAGTTCCTCCTTCT+TGG | - | chr1.3:2616053-2616072 | None:intergenic | 50.0% | |
| TTCTTCGTACGAGAGGTCCA+AGG | + | chr1.3:2615986-2616005 | MS.gene26978:CDS | 50.0% | |
| !! | TTTCAAGGGACGGGTTACAG+TGG | + | chr1.3:2616239-2616258 | MS.gene26978:CDS | 50.0% |
| TAGTTAGCAGGAGCAGCCCT+TGG | - | chr1.3:2615934-2615953 | None:intergenic | 55.0% | |
| CGAGAGGTCCAAGGCGAATG+CGG | + | chr1.3:2615995-2616014 | MS.gene26978:CDS | 60.0% | |
| GCTACAAGTGCTCGGCGAGA+TGG | - | chr1.3:2614927-2614946 | None:intergenic | 60.0% | |
| !! | GGGACGGGTTACAGTGGCTT+CGG | + | chr1.3:2616245-2616264 | MS.gene26978:CDS | 60.0% |
| TGCTCGGCGAGATGGCCAAG+TGG | - | chr1.3:2614919-2614938 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2614696 | 2616461 | 2614696 | ID=MS.gene26978 |
| chr1.3 | mRNA | 2614696 | 2616461 | 2614696 | ID=MS.gene26978.t1;Parent=MS.gene26978 |
| chr1.3 | exon | 2614696 | 2615046 | 2614696 | ID=MS.gene26978.t1.exon1;Parent=MS.gene26978.t1 |
| chr1.3 | CDS | 2614696 | 2615046 | 2614696 | ID=cds.MS.gene26978.t1;Parent=MS.gene26978.t1 |
| chr1.3 | exon | 2615163 | 2615250 | 2615163 | ID=MS.gene26978.t1.exon2;Parent=MS.gene26978.t1 |
| chr1.3 | CDS | 2615163 | 2615250 | 2615163 | ID=cds.MS.gene26978.t1;Parent=MS.gene26978.t1 |
| chr1.3 | exon | 2615602 | 2615734 | 2615602 | ID=MS.gene26978.t1.exon3;Parent=MS.gene26978.t1 |
| chr1.3 | CDS | 2615602 | 2615734 | 2615602 | ID=cds.MS.gene26978.t1;Parent=MS.gene26978.t1 |
| chr1.3 | exon | 2615819 | 2616461 | 2615819 | ID=MS.gene26978.t1.exon4;Parent=MS.gene26978.t1 |
| chr1.3 | CDS | 2615819 | 2616461 | 2615819 | ID=cds.MS.gene26978.t1;Parent=MS.gene26978.t1 |
| Gene Sequence |
| Protein sequence |
