Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27297.t1 | XP_013466123.1 | 93.5 | 413 | 18 | 2 | 1 | 404 | 10 | 422 | 2.40E-219 | 771.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27297.t1 | Q6Z2G9 | 60.6 | 424 | 142 | 7 | 1 | 404 | 10 | 428 | 2.2e-136 | 486.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27297.t1 | A0A072VEB5 | 93.5 | 413 | 18 | 2 | 1 | 404 | 10 | 422 | 1.8e-219 | 771.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27297.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27297 | MS.gene02464 | PPI |
| MS.gene27297 | MS.gene010525 | PPI |
| MS.gene27297 | MS.gene02443 | PPI |
| MS.gene27297 | MS.gene59384 | PPI |
| MS.gene27297 | MS.gene012024 | PPI |
| MS.gene02465 | MS.gene27297 | PPI |
| MS.gene76417 | MS.gene27297 | PPI |
| MS.gene02475 | MS.gene27297 | PPI |
| MS.gene27297 | MS.gene010523 | PPI |
| MS.gene27297 | MS.gene87465 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27297.t1 | MTR_1g022370 | 95.642 | 413 | 9 | 2 | 1 | 404 | 10 | 422 | 0.0 | 816 |
| MS.gene27297.t1 | MTR_5g020580 | 62.260 | 416 | 136 | 5 | 1 | 404 | 10 | 416 | 0.0 | 523 |
| MS.gene27297.t1 | MTR_8g077195 | 59.759 | 415 | 144 | 5 | 1 | 404 | 10 | 412 | 3.37e-172 | 487 |
| MS.gene27297.t1 | MTR_2g020280 | 57.923 | 366 | 144 | 4 | 46 | 404 | 31 | 393 | 2.90e-146 | 421 |
| MS.gene27297.t1 | MTR_1g098790 | 48.649 | 444 | 169 | 8 | 1 | 404 | 7 | 431 | 9.62e-144 | 416 |
| MS.gene27297.t1 | MTR_2g007930 | 50.231 | 432 | 176 | 8 | 1 | 404 | 7 | 427 | 8.56e-143 | 413 |
| MS.gene27297.t1 | MTR_1g088960 | 50.372 | 403 | 183 | 6 | 11 | 404 | 8 | 402 | 3.48e-135 | 393 |
| MS.gene27297.t1 | MTR_2g076200 | 49.580 | 357 | 159 | 4 | 48 | 404 | 36 | 371 | 2.65e-121 | 357 |
| MS.gene27297.t1 | MTR_2g020280 | 57.912 | 297 | 115 | 4 | 115 | 404 | 1 | 294 | 2.93e-116 | 341 |
| MS.gene27297.t1 | MTR_8g077675 | 47.689 | 411 | 176 | 11 | 1 | 397 | 10 | 395 | 7.11e-114 | 338 |
| MS.gene27297.t1 | MTR_8g077620 | 47.132 | 401 | 180 | 10 | 1 | 395 | 10 | 384 | 1.51e-113 | 337 |
| MS.gene27297.t1 | MTR_2g076210 | 45.479 | 365 | 173 | 10 | 43 | 404 | 26 | 367 | 4.86e-95 | 289 |
| MS.gene27297.t1 | MTR_1g023800 | 88.079 | 151 | 7 | 1 | 1 | 151 | 10 | 149 | 2.24e-91 | 272 |
| MS.gene27297.t1 | MTR_8g077650 | 41.823 | 373 | 156 | 11 | 43 | 401 | 8 | 333 | 4.82e-79 | 247 |
| MS.gene27297.t1 | MTR_8g077640 | 41.250 | 400 | 156 | 13 | 2 | 394 | 56 | 383 | 6.00e-72 | 231 |
| MS.gene27297.t1 | MTR_0210s0010 | 44.792 | 96 | 46 | 2 | 99 | 194 | 11 | 99 | 7.18e-17 | 76.3 |
| MS.gene27297.t1 | MTR_2g105390 | 27.875 | 287 | 129 | 15 | 134 | 403 | 134 | 359 | 8.58e-14 | 72.4 |
| MS.gene27297.t1 | MTR_0479s0040 | 50.000 | 70 | 28 | 2 | 113 | 182 | 12 | 74 | 2.82e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27297.t1 | AT1G47270 | 61.323 | 393 | 129 | 6 | 19 | 404 | 12 | 388 | 9.91e-166 | 470 |
| MS.gene27297.t1 | AT1G47270 | 61.323 | 393 | 129 | 6 | 19 | 404 | 36 | 412 | 1.52e-165 | 471 |
| MS.gene27297.t1 | AT1G47270 | 61.323 | 393 | 129 | 6 | 19 | 404 | 37 | 413 | 1.59e-165 | 471 |
| MS.gene27297.t1 | AT2G18280 | 55.392 | 408 | 154 | 6 | 1 | 404 | 10 | 393 | 4.06e-152 | 436 |
| MS.gene27297.t1 | AT2G18280 | 55.392 | 408 | 154 | 6 | 1 | 404 | 10 | 393 | 4.06e-152 | 436 |
| MS.gene27297.t1 | AT2G47900 | 50.488 | 410 | 187 | 3 | 1 | 404 | 7 | 406 | 2.28e-144 | 416 |
| MS.gene27297.t1 | AT2G47900 | 50.488 | 410 | 187 | 3 | 1 | 404 | 7 | 406 | 2.28e-144 | 416 |
| MS.gene27297.t1 | AT2G47900 | 50.365 | 411 | 187 | 4 | 1 | 404 | 7 | 407 | 8.41e-143 | 412 |
| MS.gene27297.t1 | AT1G25280 | 48.984 | 443 | 183 | 7 | 1 | 404 | 7 | 445 | 1.88e-139 | 405 |
| MS.gene27297.t1 | AT1G76900 | 47.598 | 458 | 177 | 7 | 1 | 404 | 7 | 455 | 7.29e-136 | 397 |
| MS.gene27297.t1 | AT1G76900 | 47.598 | 458 | 177 | 7 | 1 | 404 | 7 | 455 | 7.29e-136 | 397 |
| MS.gene27297.t1 | AT1G76900 | 47.598 | 458 | 177 | 7 | 1 | 404 | 7 | 455 | 7.29e-136 | 397 |
| MS.gene27297.t1 | AT1G43640 | 45.287 | 435 | 195 | 7 | 1 | 404 | 7 | 429 | 1.30e-125 | 370 |
| MS.gene27297.t1 | AT3G06380 | 50.407 | 369 | 170 | 5 | 41 | 404 | 20 | 380 | 1.78e-124 | 365 |
| MS.gene27297.t1 | AT1G53320 | 47.970 | 394 | 183 | 6 | 14 | 404 | 5 | 379 | 2.11e-120 | 354 |
| MS.gene27297.t1 | AT5G18680 | 50.678 | 369 | 162 | 8 | 46 | 404 | 31 | 389 | 4.79e-120 | 354 |
| MS.gene27297.t1 | AT1G43640 | 49.454 | 366 | 155 | 5 | 66 | 404 | 1 | 363 | 6.00e-118 | 348 |
| MS.gene27297.t1 | AT3G06380 | 51.027 | 292 | 131 | 4 | 117 | 404 | 5 | 288 | 3.39e-100 | 300 |
| MS.gene27297.t1 | AT5G18680 | 50.492 | 305 | 132 | 7 | 109 | 404 | 3 | 297 | 1.13e-96 | 291 |
| MS.gene27297.t1 | AT1G25280 | 50.936 | 267 | 95 | 4 | 174 | 404 | 1 | 267 | 9.70e-85 | 259 |
| MS.gene27297.t1 | AT1G25280 | 50.936 | 267 | 95 | 4 | 174 | 404 | 1 | 267 | 9.70e-85 | 259 |
| MS.gene27297.t1 | AT1G61940 | 52.874 | 87 | 41 | 0 | 57 | 143 | 1 | 87 | 1.41e-25 | 105 |
| MS.gene27297.t1 | AT1G61940 | 55.738 | 61 | 27 | 0 | 57 | 117 | 1 | 61 | 3.71e-15 | 75.1 |
Find 81 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTATTTGCAGCTCTTTC+TGG | 0.147891 | 1.2:+2214015 | MS.gene27297:intron |
| GTGCCTCAGTTTGTAAATTA+TGG | 0.198399 | 1.2:+2213374 | MS.gene27297:CDS |
| AAGCCAGAAGTTGTTGAATT+TGG | 0.203153 | 1.2:+2214552 | MS.gene27297:CDS |
| GTTCTGCAGCTGAAACATTT+TGG | 0.237846 | 1.2:-2214731 | None:intergenic |
| TAGGAGCAGTTCCTCCTTCT+TGG | 0.256813 | 1.2:-2214476 | None:intergenic |
| TCCTTCTTGGACTGAAGATA+TGG | 0.272539 | 1.2:-2214463 | None:intergenic |
| GAGCCAAATTCAACAACTTC+TGG | 0.280199 | 1.2:-2214555 | None:intergenic |
| ATTACCTGCTTCAGTGATAT+AGG | 0.293400 | 1.2:-2213454 | None:intergenic |
| TGCTGCAACTTGCAACTTGA+TGG | 0.318405 | 1.2:-2214309 | None:intergenic |
| TCCACATATAGTTTATATCT+TGG | 0.326644 | 1.2:+2213642 | MS.gene27297:CDS |
| CACTGAATTGGATTGTCTCT+TGG | 0.352418 | 1.2:-2213594 | None:intergenic |
| CTCTTAATAAAACACTGAAT+TGG | 0.367629 | 1.2:-2213606 | None:intergenic |
| TTGGAAGTACTTGCTTCATA+TGG | 0.387123 | 1.2:-2214338 | None:intergenic |
| ATACTTACATTGGAAAGTTA+AGG | 0.392067 | 1.2:+2214139 | MS.gene27297:CDS |
| TTCATGCTCATTGTGGCAAT+TGG | 0.398540 | 1.2:-2214514 | None:intergenic |
| GTTGGTGCTGATAGTGATAT+TGG | 0.400859 | 1.2:-2213226 | None:intergenic |
| TTACCTGCTTCAGTGATATA+GGG | 0.408155 | 1.2:-2213453 | None:intergenic |
| ACCAAGTTCACGATCTTAGA+TGG | 0.416091 | 1.2:+2214261 | MS.gene27297:CDS |
| CATCATCATCAGAGAGTCAA+TGG | 0.430216 | 1.2:+2213260 | MS.gene27297:CDS |
| TGCAGTTGTTCATGCCATCT+TGG | 0.442171 | 1.2:-2214627 | None:intergenic |
| GATGATGATGATGGTGTTGT+TGG | 0.443322 | 1.2:-2213244 | None:intergenic |
| CCTTCTTGGACTGAAGATAT+GGG | 0.443500 | 1.2:-2214462 | None:intergenic |
| GTTGCTACTTTATAGTTAGC+AGG | 0.444061 | 1.2:-2214369 | None:intergenic |
| ACCATCTAAGATCGTGAACT+TGG | 0.451643 | 1.2:-2214262 | None:intergenic |
| AAGGAGATGAAAGAGGGAAT+TGG | 0.461217 | 1.2:+2213124 | MS.gene27297:CDS |
| GATATTGGTGAGGAACATTC+TGG | 0.475287 | 1.2:-2213211 | None:intergenic |
| ATTGGATTGTCTCTTGGAGC+AGG | 0.482570 | 1.2:-2213588 | None:intergenic |
| GGGACGGGTTACAGTGGCTT+CGG | 0.485242 | 1.2:+2214671 | MS.gene27297:CDS |
| AGGAACTGCTCCTACTCCTA+TGG | 0.485778 | 1.2:+2214485 | MS.gene27297:CDS |
| GAGATGAAGGAGATGAAAGA+GGG | 0.489271 | 1.2:+2213118 | None:intergenic |
| GTGTTTGAATTTCAAGGGAC+GGG | 0.490017 | 1.2:+2214656 | MS.gene27297:CDS |
| AGGAGTTATCATTCACAAGC+TGG | 0.492801 | 1.2:-2214873 | None:intergenic |
| AAGTTGCAAGTTGCAGCAAA+AGG | 0.503666 | 1.2:+2214314 | MS.gene27297:CDS |
| TGATATGAGCAAACTTCTCT+TGG | 0.505017 | 1.2:+2214038 | MS.gene27297:CDS |
| TTATATCTTGGTCTAAGCCC+TGG | 0.508714 | 1.2:+2213654 | MS.gene27297:CDS |
| TTATGGAGAGACATAACAAA+GGG | 0.510882 | 1.2:+2213391 | MS.gene27297:CDS |
| AGAGATGAAGGAGATGAAAG+AGG | 0.511465 | 1.2:+2213117 | None:intergenic |
| AGACACTTGAACAGTGTGGC+TGG | 0.511733 | 1.2:+2213422 | MS.gene27297:CDS |
| TAGTTAGCAGGAGCAGCCCT+TGG | 0.515473 | 1.2:-2214357 | None:intergenic |
| ACTATTAGACATAATTCAAA+GGG | 0.516941 | 1.2:+2213303 | MS.gene27297:CDS |
| ACCAAGATATAAACTATATG+TGG | 0.517704 | 1.2:-2213643 | None:intergenic |
| ATTGTACTCCGCATTCGCCT+TGG | 0.518756 | 1.2:-2214429 | None:intergenic |
| GGTGTTTGAATTTCAAGGGA+CGG | 0.518832 | 1.2:+2214655 | MS.gene27297:CDS |
| AGAGCTAACAATACTTACAT+TGG | 0.531671 | 1.2:+2214129 | MS.gene27297:CDS |
| TGGCAATTGGTAAATTCCAT+AGG | 0.538026 | 1.2:-2214501 | None:intergenic |
| TTTCCCTATATCACTGAAGC+AGG | 0.541444 | 1.2:+2213450 | MS.gene27297:CDS |
| ATGTTGGTGTTTGAATTTCA+AGG | 0.542716 | 1.2:+2214650 | MS.gene27297:CDS |
| TTGGTAAATTCCATAGGAGT+AGG | 0.543440 | 1.2:-2214495 | None:intergenic |
| TACTATTAGACATAATTCAA+AGG | 0.554134 | 1.2:+2213302 | MS.gene27297:CDS |
| ATATGAAGCAAGTACTTCCA+AGG | 0.555692 | 1.2:+2214340 | MS.gene27297:CDS |
| ATTATGTCTAATAGTAACTC+AGG | 0.562516 | 1.2:-2213295 | None:intergenic |
| TGTTGGTGTTTGAATTTCAA+GGG | 0.562671 | 1.2:+2214651 | MS.gene27297:CDS |
| ATCATCATCAGAGAGTCAAT+GGG | 0.565599 | 1.2:+2213261 | MS.gene27297:CDS |
| GCTACAAGTGCTCGGCGAGA+TGG | 0.582646 | 1.2:-2213349 | None:intergenic |
| TTGCAGATTCATGCTCATTG+TGG | 0.583392 | 1.2:-2214521 | None:intergenic |
| CCCATATCTTCAGTCCAAGA+AGG | 0.587259 | 1.2:+2214462 | MS.gene27297:CDS |
| CTCAATGTTCTTCGTACGAG+AGG | 0.596421 | 1.2:+2214405 | MS.gene27297:CDS |
| GGCATGAACAACTGCAATGT+TGG | 0.599403 | 1.2:+2214634 | MS.gene27297:CDS |
| GAGAGGATATCGATAATCCA+TGG | 0.599763 | 1.2:-2214802 | None:intergenic |
| CTTCTTGGACTGAAGATATG+GGG | 0.599973 | 1.2:-2214461 | None:intergenic |
| CGAGAGGTCCAAGGCGAATG+CGG | 0.601851 | 1.2:+2214421 | MS.gene27297:CDS |
| ATTAGACATAATTCAAAGGG+TGG | 0.608482 | 1.2:+2213306 | MS.gene27297:CDS |
| TTCTTCGTACGAGAGGTCCA+AGG | 0.616949 | 1.2:+2214412 | MS.gene27297:CDS |
| ACTAAGCATATGCATAGACA+TGG | 0.617362 | 1.2:+2213172 | MS.gene27297:CDS |
| TCTCCATAATTTACAAACTG+AGG | 0.624053 | 1.2:-2213377 | None:intergenic |
| GCTGCTCAAACAGATTGCAA+AGG | 0.630739 | 1.2:-2214838 | None:intergenic |
| ATTGGCAACATGTATAGAAG+AGG | 0.636703 | 1.2:+2213142 | MS.gene27297:CDS |
| CGGGAAGGACATATTCACCA+TGG | 0.637363 | 1.2:+2214785 | MS.gene27297:CDS |
| TGGAAGCTAGTGAAACCACT+TGG | 0.639315 | 1.2:+2213326 | MS.gene27297:CDS |
| TTTCAAGGGACGGGTTACAG+TGG | 0.641025 | 1.2:+2214665 | MS.gene27297:CDS |
| AGGCACAAGCTACAAGTGCT+CGG | 0.645228 | 1.2:-2213357 | None:intergenic |
| TATGAAGCAAGTACTTCCAA+GGG | 0.646074 | 1.2:+2214341 | MS.gene27297:CDS |
| ATTATGGAGAGACATAACAA+AGG | 0.658169 | 1.2:+2213390 | MS.gene27297:CDS |
| ATGTCTAATAGTAACTCAGG+AGG | 0.663267 | 1.2:-2213292 | None:intergenic |
| AAGGCTTGAAAAGCAGAGAG+AGG | 0.664732 | 1.2:-2214819 | None:intergenic |
| ATATCTTCAGTCCAAGAAGG+AGG | 0.675556 | 1.2:+2214465 | MS.gene27297:CDS |
| TGCTCGGCGAGATGGCCAAG+TGG | 0.681754 | 1.2:-2213341 | None:intergenic |
| TGCTGATAGTGATATTGGTG+AGG | 0.701371 | 1.2:-2213221 | None:intergenic |
| GATGGAAGCGAAGAAACATG+TGG | 0.713919 | 1.2:-2214291 | None:intergenic |
| GGAAGCGAAGAAACATGTGG+AGG | 0.757377 | 1.2:-2214288 | None:intergenic |
| GTTAAGACACTTGAACAGTG+TGG | 0.771470 | 1.2:+2213418 | MS.gene27297:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGCCTAAAAGA+AGG | - | chr1.2:2213807-2213826 | None:intergenic | 20.0% |
| !! | AATAACACAATTCACAAATA+TGG | - | chr1.2:2213998-2214017 | None:intergenic | 20.0% |
| !! | ACATGAAATTATTCTCTATT+TGG | + | chr1.2:2213693-2213712 | MS.gene27297:intron | 20.0% |
| !! | ACTATTAGACATAATTCAAA+GGG | + | chr1.2:2213303-2213322 | MS.gene27297:CDS | 20.0% |
| !! | ATACTACAATTTGGAAAAAT+CGG | + | chr1.2:2214765-2214784 | MS.gene27297:CDS | 20.0% |
| !! | GAAAAAGTTATACTACAATT+TGG | + | chr1.2:2214756-2214775 | MS.gene27297:CDS | 20.0% |
| !! | TAATCATTAAGCAAAATAAC+AGG | + | chr1.2:2214223-2214242 | MS.gene27297:intron | 20.0% |
| !! | TACTATTAGACATAATTCAA+AGG | + | chr1.2:2213302-2213321 | MS.gene27297:CDS | 20.0% |
| !!! | CACAGAATTTTTAATATCAT+TGG | + | chr1.2:2214089-2214108 | MS.gene27297:CDS | 20.0% |
| !!! | TGTAATTTTTGTTTTAAGCT+TGG | + | chr1.2:2213508-2213527 | MS.gene27297:intron | 20.0% |
| !!! | TTTGGTAACAAAATTTTGTT+TGG | + | chr1.2:2213711-2213730 | MS.gene27297:intron | 20.0% |
| ! | ACCAAGATATAAACTATATG+TGG | - | chr1.2:2213646-2213665 | None:intergenic | 25.0% |
| ! | ATACTTACATTGGAAAGTTA+AGG | + | chr1.2:2214139-2214158 | MS.gene27297:CDS | 25.0% |
| ! | ATTATGTCTAATAGTAACTC+AGG | - | chr1.2:2213298-2213317 | None:intergenic | 25.0% |
| ! | CTCTTAATAAAACACTGAAT+TGG | - | chr1.2:2213609-2213628 | None:intergenic | 25.0% |
| ! | GTTCAAAGACTAAAAAAAGA+AGG | - | chr1.2:2213913-2213932 | None:intergenic | 25.0% |
| ! | TACTACAATTTGGAAAAATC+GGG | + | chr1.2:2214766-2214785 | MS.gene27297:CDS | 25.0% |
| ! | TCCACATATAGTTTATATCT+TGG | + | chr1.2:2213642-2213661 | MS.gene27297:CDS | 25.0% |
| !! | AACTTGAATTACCTTCTTTT+AGG | + | chr1.2:2213793-2213812 | MS.gene27297:intron | 25.0% |
| !! | AATAACAGGTCTAATTTTCT+CGG | + | chr1.2:2214237-2214256 | MS.gene27297:intron | 25.0% |
| !!! | AGTGTTTTATTAAGAGAGAA+AGG | + | chr1.2:2213613-2213632 | MS.gene27297:CDS | 25.0% |
| !!! | ATTGATTTGTAAGTTTACTC+TGG | - | chr1.2:2213864-2213883 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTAAGAGAGAAA+GGG | + | chr1.2:2213614-2213633 | MS.gene27297:CDS | 25.0% |
| AGAGCTAACAATACTTACAT+TGG | + | chr1.2:2214129-2214148 | MS.gene27297:CDS | 30.0% | |
| ATTAGACATAATTCAAAGGG+TGG | + | chr1.2:2213306-2213325 | MS.gene27297:CDS | 30.0% | |
| ATTATGGAGAGACATAACAA+AGG | + | chr1.2:2213390-2213409 | MS.gene27297:CDS | 30.0% | |
| CACAAATCGAGAATAGTTAA+CGG | - | chr1.2:2213957-2213976 | None:intergenic | 30.0% | |
| TCTCCATAATTTACAAACTG+AGG | - | chr1.2:2213380-2213399 | None:intergenic | 30.0% | |
| TTATGGAGAGACATAACAAA+GGG | + | chr1.2:2213391-2213410 | MS.gene27297:CDS | 30.0% | |
| ! | AATCAATCCACATCTTTTCA+TGG | + | chr1.2:2214173-2214192 | MS.gene27297:intron | 30.0% |
| ! | ATGTTGGTGTTTGAATTTCA+AGG | + | chr1.2:2214650-2214669 | MS.gene27297:CDS | 30.0% |
| ! | TAACTATTCTCGATTTGTGA+AGG | + | chr1.2:2213958-2213977 | MS.gene27297:intron | 30.0% |
| ! | TGTTGGTGTTTGAATTTCAA+GGG | + | chr1.2:2214651-2214670 | MS.gene27297:CDS | 30.0% |
| !!! | GCTTTGTTTTTCAAAATCAG+AGG | - | chr1.2:2214606-2214625 | None:intergenic | 30.0% |
| AAGCCAGAAGTTGTTGAATT+TGG | + | chr1.2:2214552-2214571 | MS.gene27297:CDS | 35.0% | |
| ACAATTTGGAAAAATCGGGA+AGG | + | chr1.2:2214770-2214789 | MS.gene27297:CDS | 35.0% | |
| ACTAAGCATATGCATAGACA+TGG | + | chr1.2:2213172-2213191 | MS.gene27297:CDS | 35.0% | |
| ATATGAAGCAAGTACTTCCA+AGG | + | chr1.2:2214340-2214359 | MS.gene27297:CDS | 35.0% | |
| ATCATCATCAGAGAGTCAAT+GGG | + | chr1.2:2213261-2213280 | MS.gene27297:CDS | 35.0% | |
| ATGTCTAATAGTAACTCAGG+AGG | - | chr1.2:2213295-2213314 | None:intergenic | 35.0% | |
| ATTACCTGCTTCAGTGATAT+AGG | - | chr1.2:2213457-2213476 | None:intergenic | 35.0% | |
| ATTGGCAACATGTATAGAAG+AGG | + | chr1.2:2213142-2213161 | MS.gene27297:CDS | 35.0% | |
| ATTGTATTTGCAGCTCTTTC+TGG | + | chr1.2:2214015-2214034 | MS.gene27297:intron | 35.0% | |
| GCATTAACCATGAAAAGATG+TGG | - | chr1.2:2214183-2214202 | None:intergenic | 35.0% | |
| GTGCCTCAGTTTGTAAATTA+TGG | + | chr1.2:2213374-2213393 | MS.gene27297:CDS | 35.0% | |
| TATGAAGCAAGTACTTCCAA+GGG | + | chr1.2:2214341-2214360 | MS.gene27297:CDS | 35.0% | |
| TGATATGAGCAAACTTCTCT+TGG | + | chr1.2:2214038-2214057 | MS.gene27297:CDS | 35.0% | |
| TGGCAATTGGTAAATTCCAT+AGG | - | chr1.2:2214504-2214523 | None:intergenic | 35.0% | |
| TTACCTGCTTCAGTGATATA+GGG | - | chr1.2:2213456-2213475 | None:intergenic | 35.0% | |
| TTGGTAAATTCCATAGGAGT+AGG | - | chr1.2:2214498-2214517 | None:intergenic | 35.0% | |
| ! | GAAAAGATGTGGATTGATTG+AGG | - | chr1.2:2214172-2214191 | None:intergenic | 35.0% |
| ! | TGAAAAACAAAGCACCAAGA+TGG | + | chr1.2:2214613-2214632 | MS.gene27297:CDS | 35.0% |
| !! | GTTGCTACTTTATAGTTAGC+AGG | - | chr1.2:2214372-2214391 | None:intergenic | 35.0% |
| !! | GTTTTAAGCTTGGAAGAACA+TGG | + | chr1.2:2213518-2213537 | MS.gene27297:intron | 35.0% |
| !! | TTGGAAGTACTTGCTTCATA+TGG | - | chr1.2:2214341-2214360 | None:intergenic | 35.0% |
| AAGGAGATGAAAGAGGGAAT+TGG | + | chr1.2:2213124-2213143 | MS.gene27297:CDS | 40.0% | |
| AAGTTGCAAGTTGCAGCAAA+AGG | + | chr1.2:2214314-2214333 | MS.gene27297:CDS | 40.0% | |
| ACCAAGTTCACGATCTTAGA+TGG | + | chr1.2:2214261-2214280 | MS.gene27297:CDS | 40.0% | |
| ATATCTTCAGTCCAAGAAGG+AGG | + | chr1.2:2214465-2214484 | MS.gene27297:CDS | 40.0% | |
| CACTGAATTGGATTGTCTCT+TGG | - | chr1.2:2213597-2213616 | None:intergenic | 40.0% | |
| CATCATCATCAGAGAGTCAA+TGG | + | chr1.2:2213260-2213279 | MS.gene27297:CDS | 40.0% | |
| CCTTCTTGGACTGAAGATAT+GGG | - | chr1.2:2214465-2214484 | None:intergenic | 40.0% | |
| CTTCTTGGACTGAAGATATG+GGG | - | chr1.2:2214464-2214483 | None:intergenic | 40.0% | |
| GAGAGGATATCGATAATCCA+TGG | - | chr1.2:2214805-2214824 | None:intergenic | 40.0% | |
| GAGCCAAATTCAACAACTTC+TGG | - | chr1.2:2214558-2214577 | None:intergenic | 40.0% | |
| GATATTGGTGAGGAACATTC+TGG | - | chr1.2:2213214-2213233 | None:intergenic | 40.0% | |
| GGTGTTTGAATTTCAAGGGA+CGG | + | chr1.2:2214655-2214674 | MS.gene27297:CDS | 40.0% | |
| GTGTTTGAATTTCAAGGGAC+GGG | + | chr1.2:2214656-2214675 | MS.gene27297:CDS | 40.0% | |
| GTTAAGACACTTGAACAGTG+TGG | + | chr1.2:2213418-2213437 | MS.gene27297:CDS | 40.0% | |
| TCCTTCTTGGACTGAAGATA+TGG | - | chr1.2:2214466-2214485 | None:intergenic | 40.0% | |
| TGAGCACAACAATCTTACCA+GGG | - | chr1.2:2213674-2213693 | None:intergenic | 40.0% | |
| TTATATCTTGGTCTAAGCCC+TGG | + | chr1.2:2213654-2213673 | MS.gene27297:CDS | 40.0% | |
| TTCATGCTCATTGTGGCAAT+TGG | - | chr1.2:2214517-2214536 | None:intergenic | 40.0% | |
| TTGCAGATTCATGCTCATTG+TGG | - | chr1.2:2214524-2214543 | None:intergenic | 40.0% | |
| TTTCCCTATATCACTGAAGC+AGG | + | chr1.2:2213450-2213469 | MS.gene27297:CDS | 40.0% | |
| ! | ACCATCTAAGATCGTGAACT+TGG | - | chr1.2:2214265-2214284 | None:intergenic | 40.0% |
| ! | CTCTCTGATGATGATGATGA+TGG | - | chr1.2:2213256-2213275 | None:intergenic | 40.0% |
| ! | GTTCTGCAGCTGAAACATTT+TGG | - | chr1.2:2214734-2214753 | None:intergenic | 40.0% |
| ! | TGCTGATAGTGATATTGGTG+AGG | - | chr1.2:2213224-2213243 | None:intergenic | 40.0% |
| !! | GATGATGATGATGGTGTTGT+TGG | - | chr1.2:2213247-2213266 | None:intergenic | 40.0% |
| !! | GTTGGTGCTGATAGTGATAT+TGG | - | chr1.2:2213229-2213248 | None:intergenic | 40.0% |
| AAGGCTTGAAAAGCAGAGAG+AGG | - | chr1.2:2214822-2214841 | None:intergenic | 45.0% | |
| ATTGGATTGTCTCTTGGAGC+AGG | - | chr1.2:2213591-2213610 | None:intergenic | 45.0% | |
| CCCATATCTTCAGTCCAAGA+AGG | + | chr1.2:2214462-2214481 | MS.gene27297:CDS | 45.0% | |
| CTCAATGTTCTTCGTACGAG+AGG | + | chr1.2:2214405-2214424 | MS.gene27297:CDS | 45.0% | |
| GATGGAAGCGAAGAAACATG+TGG | - | chr1.2:2214294-2214313 | None:intergenic | 45.0% | |
| GCTGCTCAAACAGATTGCAA+AGG | - | chr1.2:2214841-2214860 | None:intergenic | 45.0% | |
| GGCATGAACAACTGCAATGT+TGG | + | chr1.2:2214634-2214653 | MS.gene27297:CDS | 45.0% | |
| GTGAGCACAACAATCTTACC+AGG | - | chr1.2:2213675-2213694 | None:intergenic | 45.0% | |
| TGCAGTTGTTCATGCCATCT+TGG | - | chr1.2:2214630-2214649 | None:intergenic | 45.0% | |
| TGCTGCAACTTGCAACTTGA+TGG | - | chr1.2:2214312-2214331 | None:intergenic | 45.0% | |
| TGGAAGCTAGTGAAACCACT+TGG | + | chr1.2:2213326-2213345 | MS.gene27297:CDS | 45.0% | |
| !!! | GCAGCTGAAACATTTTGGCT+AGG | - | chr1.2:2214729-2214748 | None:intergenic | 45.0% |
| AGACACTTGAACAGTGTGGC+TGG | + | chr1.2:2213422-2213441 | MS.gene27297:CDS | 50.0% | |
| AGGAACTGCTCCTACTCCTA+TGG | + | chr1.2:2214485-2214504 | MS.gene27297:CDS | 50.0% | |
| AGGCACAAGCTACAAGTGCT+CGG | - | chr1.2:2213360-2213379 | None:intergenic | 50.0% | |
| ATTGTACTCCGCATTCGCCT+TGG | - | chr1.2:2214432-2214451 | None:intergenic | 50.0% | |
| CGGGAAGGACATATTCACCA+TGG | + | chr1.2:2214785-2214804 | MS.gene27297:CDS | 50.0% | |
| GGAAGCGAAGAAACATGTGG+AGG | - | chr1.2:2214291-2214310 | None:intergenic | 50.0% | |
| TAGGAGCAGTTCCTCCTTCT+TGG | - | chr1.2:2214479-2214498 | None:intergenic | 50.0% | |
| TTCTTCGTACGAGAGGTCCA+AGG | + | chr1.2:2214412-2214431 | MS.gene27297:CDS | 50.0% | |
| !! | TTTCAAGGGACGGGTTACAG+TGG | + | chr1.2:2214665-2214684 | MS.gene27297:CDS | 50.0% |
| TAGTTAGCAGGAGCAGCCCT+TGG | - | chr1.2:2214360-2214379 | None:intergenic | 55.0% | |
| CGAGAGGTCCAAGGCGAATG+CGG | + | chr1.2:2214421-2214440 | MS.gene27297:CDS | 60.0% | |
| GCTACAAGTGCTCGGCGAGA+TGG | - | chr1.2:2213352-2213371 | None:intergenic | 60.0% | |
| !! | GGGACGGGTTACAGTGGCTT+CGG | + | chr1.2:2214671-2214690 | MS.gene27297:CDS | 60.0% |
| TGCTCGGCGAGATGGCCAAG+TGG | - | chr1.2:2213344-2213363 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 2213121 | 2214887 | 2213121 | ID=MS.gene27297 |
| chr1.2 | mRNA | 2213121 | 2214887 | 2213121 | ID=MS.gene27297.t1;Parent=MS.gene27297 |
| chr1.2 | exon | 2213121 | 2213471 | 2213121 | ID=MS.gene27297.t1.exon1;Parent=MS.gene27297.t1 |
| chr1.2 | CDS | 2213121 | 2213471 | 2213121 | ID=cds.MS.gene27297.t1;Parent=MS.gene27297.t1 |
| chr1.2 | exon | 2213588 | 2213675 | 2213588 | ID=MS.gene27297.t1.exon2;Parent=MS.gene27297.t1 |
| chr1.2 | CDS | 2213588 | 2213675 | 2213588 | ID=cds.MS.gene27297.t1;Parent=MS.gene27297.t1 |
| chr1.2 | exon | 2214028 | 2214160 | 2214028 | ID=MS.gene27297.t1.exon3;Parent=MS.gene27297.t1 |
| chr1.2 | CDS | 2214028 | 2214160 | 2214028 | ID=cds.MS.gene27297.t1;Parent=MS.gene27297.t1 |
| chr1.2 | exon | 2214245 | 2214887 | 2214245 | ID=MS.gene27297.t1.exon4;Parent=MS.gene27297.t1 |
| chr1.2 | CDS | 2214245 | 2214887 | 2214245 | ID=cds.MS.gene27297.t1;Parent=MS.gene27297.t1 |
| Gene Sequence |
| Protein sequence |
