Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24262.t1 | XP_013466123.1 | 93.9 | 413 | 15 | 2 | 1 | 403 | 10 | 422 | 4.90E-220 | 773.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24262.t1 | Q6Z2G9 | 61.0 | 428 | 133 | 8 | 1 | 403 | 10 | 428 | 4.5e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24262.t1 | A0A072VEB5 | 93.9 | 413 | 15 | 2 | 1 | 403 | 10 | 422 | 3.5e-220 | 773.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24262.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59384 | MS.gene24262 | PPI |
| MS.gene87465 | MS.gene24262 | PPI |
| MS.gene02465 | MS.gene24262 | PPI |
| MS.gene012024 | MS.gene24262 | PPI |
| MS.gene76417 | MS.gene24262 | PPI |
| MS.gene02475 | MS.gene24262 | PPI |
| MS.gene02464 | MS.gene24262 | PPI |
| MS.gene010523 | MS.gene24262 | PPI |
| MS.gene010525 | MS.gene24262 | PPI |
| MS.gene02443 | MS.gene24262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24262.t1 | MTR_1g022370 | 95.884 | 413 | 7 | 2 | 1 | 403 | 10 | 422 | 0.0 | 816 |
| MS.gene24262.t1 | MTR_5g020580 | 62.892 | 415 | 134 | 5 | 1 | 403 | 10 | 416 | 0.0 | 529 |
| MS.gene24262.t1 | MTR_8g077195 | 59.903 | 414 | 144 | 6 | 1 | 403 | 10 | 412 | 2.37e-172 | 488 |
| MS.gene24262.t1 | MTR_2g020280 | 58.630 | 365 | 141 | 4 | 46 | 403 | 32 | 393 | 6.29e-148 | 425 |
| MS.gene24262.t1 | MTR_1g098790 | 49.771 | 436 | 175 | 7 | 1 | 403 | 7 | 431 | 4.06e-145 | 419 |
| MS.gene24262.t1 | MTR_2g007930 | 50.816 | 429 | 177 | 7 | 1 | 403 | 7 | 427 | 2.91e-144 | 417 |
| MS.gene24262.t1 | MTR_1g088960 | 51.613 | 403 | 177 | 7 | 11 | 403 | 8 | 402 | 1.31e-136 | 397 |
| MS.gene24262.t1 | MTR_2g076200 | 49.580 | 357 | 159 | 4 | 47 | 403 | 36 | 371 | 9.11e-122 | 358 |
| MS.gene24262.t1 | MTR_2g020280 | 58.249 | 297 | 114 | 4 | 114 | 403 | 1 | 294 | 3.61e-117 | 343 |
| MS.gene24262.t1 | MTR_8g077675 | 47.805 | 410 | 176 | 12 | 1 | 396 | 10 | 395 | 3.18e-114 | 339 |
| MS.gene24262.t1 | MTR_8g077620 | 47.000 | 400 | 181 | 11 | 1 | 394 | 10 | 384 | 7.85e-113 | 335 |
| MS.gene24262.t1 | MTR_2g076210 | 45.040 | 373 | 175 | 11 | 38 | 403 | 18 | 367 | 1.23e-94 | 288 |
| MS.gene24262.t1 | MTR_1g023800 | 89.333 | 150 | 6 | 1 | 1 | 150 | 10 | 149 | 5.00e-92 | 274 |
| MS.gene24262.t1 | MTR_8g077650 | 42.192 | 365 | 150 | 11 | 50 | 400 | 16 | 333 | 1.42e-78 | 246 |
| MS.gene24262.t1 | MTR_8g077640 | 43.401 | 394 | 155 | 14 | 2 | 393 | 56 | 383 | 5.04e-74 | 236 |
| MS.gene24262.t1 | MTR_0210s0010 | 44.792 | 96 | 46 | 2 | 98 | 193 | 11 | 99 | 7.14e-17 | 76.3 |
| MS.gene24262.t1 | MTR_2g105390 | 28.223 | 287 | 128 | 15 | 133 | 402 | 134 | 359 | 2.38e-14 | 74.3 |
| MS.gene24262.t1 | MTR_0479s0040 | 50.000 | 70 | 28 | 2 | 112 | 181 | 12 | 74 | 2.52e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24262.t1 | AT1G47270 | 61.990 | 392 | 127 | 6 | 19 | 403 | 12 | 388 | 3.09e-167 | 474 |
| MS.gene24262.t1 | AT1G47270 | 61.990 | 392 | 127 | 6 | 19 | 403 | 37 | 413 | 4.95e-167 | 474 |
| MS.gene24262.t1 | AT1G47270 | 61.990 | 392 | 127 | 6 | 19 | 403 | 36 | 412 | 6.35e-167 | 474 |
| MS.gene24262.t1 | AT2G18280 | 55.528 | 407 | 154 | 6 | 1 | 403 | 10 | 393 | 1.63e-152 | 437 |
| MS.gene24262.t1 | AT2G18280 | 55.528 | 407 | 154 | 6 | 1 | 403 | 10 | 393 | 1.63e-152 | 437 |
| MS.gene24262.t1 | AT2G47900 | 51.220 | 410 | 183 | 4 | 1 | 403 | 7 | 406 | 4.06e-146 | 421 |
| MS.gene24262.t1 | AT2G47900 | 51.220 | 410 | 183 | 4 | 1 | 403 | 7 | 406 | 4.06e-146 | 421 |
| MS.gene24262.t1 | AT2G47900 | 51.095 | 411 | 183 | 5 | 1 | 403 | 7 | 407 | 2.79e-144 | 416 |
| MS.gene24262.t1 | AT1G25280 | 49.774 | 442 | 180 | 7 | 1 | 403 | 7 | 445 | 1.57e-141 | 410 |
| MS.gene24262.t1 | AT1G76900 | 48.359 | 457 | 174 | 7 | 1 | 403 | 7 | 455 | 2.95e-138 | 403 |
| MS.gene24262.t1 | AT1G76900 | 48.359 | 457 | 174 | 7 | 1 | 403 | 7 | 455 | 2.95e-138 | 403 |
| MS.gene24262.t1 | AT1G76900 | 48.359 | 457 | 174 | 7 | 1 | 403 | 7 | 455 | 2.95e-138 | 403 |
| MS.gene24262.t1 | AT1G43640 | 45.517 | 435 | 193 | 8 | 1 | 403 | 7 | 429 | 7.75e-127 | 373 |
| MS.gene24262.t1 | AT3G06380 | 50.949 | 369 | 168 | 5 | 40 | 403 | 20 | 380 | 1.42e-125 | 368 |
| MS.gene24262.t1 | AT5G18680 | 50.678 | 369 | 166 | 7 | 43 | 403 | 29 | 389 | 4.30e-122 | 359 |
| MS.gene24262.t1 | AT1G53320 | 47.583 | 393 | 185 | 5 | 14 | 403 | 5 | 379 | 1.38e-120 | 355 |
| MS.gene24262.t1 | AT1G43640 | 49.727 | 366 | 154 | 5 | 65 | 403 | 1 | 363 | 3.61e-119 | 351 |
| MS.gene24262.t1 | AT3G06380 | 51.027 | 292 | 131 | 4 | 116 | 403 | 5 | 288 | 3.78e-100 | 300 |
| MS.gene24262.t1 | AT5G18680 | 50.495 | 303 | 135 | 6 | 108 | 403 | 3 | 297 | 5.38e-98 | 294 |
| MS.gene24262.t1 | AT1G25280 | 51.685 | 267 | 93 | 4 | 173 | 403 | 1 | 267 | 3.97e-86 | 263 |
| MS.gene24262.t1 | AT1G25280 | 51.685 | 267 | 93 | 4 | 173 | 403 | 1 | 267 | 3.97e-86 | 263 |
| MS.gene24262.t1 | AT1G61940 | 51.724 | 87 | 42 | 0 | 56 | 142 | 1 | 87 | 3.11e-25 | 103 |
| MS.gene24262.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 56 | 116 | 1 | 61 | 7.54e-15 | 74.3 |
Find 85 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTATTTGCAGCTCTTTC+TGG | 0.172088 | 1.1:+1920803 | MS.gene24262:intron |
| AAGCCAGAAGTTGTTGAATT+TGG | 0.203153 | 1.1:+1921340 | MS.gene24262:CDS |
| TCCTTCTTGGACTGAGGATA+TGG | 0.210729 | 1.1:-1921251 | None:intergenic |
| GTGCCTCAGTTTGTAGATTA+TGG | 0.216681 | 1.1:+1920158 | MS.gene24262:CDS |
| TAGGAGCAGTTCCTCCTTCT+TGG | 0.256813 | 1.1:-1921264 | None:intergenic |
| GTTCTGCAGCCGAAACATTT+TGG | 0.267597 | 1.1:-1921519 | None:intergenic |
| GAGCCAAATTCAACAACTTC+TGG | 0.280199 | 1.1:-1921343 | None:intergenic |
| ATTACCTGCTTCAGTGATAT+AGG | 0.293400 | 1.1:-1920238 | None:intergenic |
| TCCACATATAGTTTATATCT+TGG | 0.326644 | 1.1:+1920426 | MS.gene24262:CDS |
| TGTTGCAACTTGCAACTTGA+TGG | 0.335287 | 1.1:-1921097 | None:intergenic |
| CACTGAATTGGATTGTCTCT+TGG | 0.352418 | 1.1:-1920378 | None:intergenic |
| CTCTTAATAAAACACTGAAT+TGG | 0.367629 | 1.1:-1920390 | None:intergenic |
| CCTTCTTGGACTGAGGATAT+GGG | 0.382509 | 1.1:-1921250 | None:intergenic |
| TTGGAAGTACTTGCTTCATA+TGG | 0.387123 | 1.1:-1921126 | None:intergenic |
| ATACTTACATTGGAAAGTTA+AGG | 0.392067 | 1.1:+1920927 | MS.gene24262:CDS |
| TTCATGCTCATTGTGGCAAT+TGG | 0.398540 | 1.1:-1921302 | None:intergenic |
| GTTGGTGCTGATAGTGATAT+TGG | 0.400859 | 1.1:-1920013 | None:intergenic |
| TTACCTGCTTCAGTGATATA+GGG | 0.408155 | 1.1:-1920237 | None:intergenic |
| ACCAAGTTCACGATCTTAGA+TGG | 0.416091 | 1.1:+1921049 | MS.gene24262:CDS |
| GATGATGATGATGGTGTTGT+TGG | 0.425659 | 1.1:-1920031 | None:intergenic |
| CATCATCATCAGAGAGTCAA+TGG | 0.430216 | 1.1:+1920044 | MS.gene24262:CDS |
| GTTGCTACTTTATAGTTAGC+AGG | 0.444061 | 1.1:-1921157 | None:intergenic |
| TGCAGTTGTTCGTGCCATCT+TGG | 0.451012 | 1.1:-1921415 | None:intergenic |
| ACCATCTAAGATCGTGAACT+TGG | 0.451643 | 1.1:-1921050 | None:intergenic |
| AGAACCTAGCCAAAATGTTT+CGG | 0.455535 | 1.1:+1921510 | MS.gene24262:CDS |
| AAGGAGATGAAAGAGGGAAT+TGG | 0.461217 | 1.1:+1919911 | MS.gene24262:CDS |
| GATATTGGTGAGGAACATTC+TGG | 0.475287 | 1.1:-1919998 | None:intergenic |
| ATTGGATTGTCTCTTGGAGC+AGG | 0.482570 | 1.1:-1920372 | None:intergenic |
| GGGACGGGTTACAGTGGCTT+CGG | 0.485242 | 1.1:+1921459 | MS.gene24262:CDS |
| AGGAACTGCTCCTACTCCTA+TGG | 0.485778 | 1.1:+1921273 | MS.gene24262:CDS |
| GAGATGAAGGAGATGAAAGA+GGG | 0.489271 | 1.1:+1919905 | None:intergenic |
| GTGTTTGAATTTCAAGGGAC+GGG | 0.490017 | 1.1:+1921444 | MS.gene24262:CDS |
| AGGAGTTATCATTCACAAGC+TGG | 0.492801 | 1.1:-1921661 | None:intergenic |
| TGATATGAGCAAACTTCTCT+TGG | 0.505017 | 1.1:+1920826 | MS.gene24262:CDS |
| AAGTTGCAAGTTGCAACAAA+AGG | 0.506772 | 1.1:+1921102 | MS.gene24262:CDS |
| TTATATCTTGGTCTAAGCCC+TGG | 0.508714 | 1.1:+1920438 | MS.gene24262:CDS |
| AGAGATGAAGGAGATGAAAG+AGG | 0.511465 | 1.1:+1919904 | None:intergenic |
| AGACACTTGAACAGTGTGGC+TGG | 0.511733 | 1.1:+1920206 | MS.gene24262:CDS |
| ATCGTGCTCCGCATTCGCCT+TGG | 0.515273 | 1.1:-1921217 | None:intergenic |
| TAGTTAGCAGGAGCAGCCCT+TGG | 0.515473 | 1.1:-1921145 | None:intergenic |
| ACTATTAGACATAATTCAAA+GGG | 0.516941 | 1.1:+1920087 | MS.gene24262:CDS |
| ACCAAGATATAAACTATATG+TGG | 0.517704 | 1.1:-1920427 | None:intergenic |
| GGTGTTTGAATTTCAAGGGA+CGG | 0.518832 | 1.1:+1921443 | MS.gene24262:CDS |
| TTATGGAGAGACATAACAAA+GGG | 0.526760 | 1.1:+1920175 | MS.gene24262:CDS |
| AGAGCTAACAATACTTACAT+TGG | 0.531671 | 1.1:+1920917 | MS.gene24262:CDS |
| TGGCAATTGGTAAATTCCAT+AGG | 0.538026 | 1.1:-1921289 | None:intergenic |
| TTTCCCTATATCACTGAAGC+AGG | 0.541444 | 1.1:+1920234 | MS.gene24262:CDS |
| ATGTTGGTGTTTGAATTTCA+AGG | 0.542716 | 1.1:+1921438 | MS.gene24262:CDS |
| TTGGTAAATTCCATAGGAGT+AGG | 0.543440 | 1.1:-1921283 | None:intergenic |
| CTTCTTGGACTGAGGATATG+GGG | 0.544381 | 1.1:-1921249 | None:intergenic |
| TACTATTAGACATAATTCAA+AGG | 0.554134 | 1.1:+1920086 | MS.gene24262:CDS |
| ATATGAAGCAAGTACTTCCA+AGG | 0.555692 | 1.1:+1921128 | MS.gene24262:CDS |
| ATTATGTCTAATAGTAACTC+AGG | 0.562516 | 1.1:-1920079 | None:intergenic |
| TGTTGGTGTTTGAATTTCAA+GGG | 0.562671 | 1.1:+1921439 | MS.gene24262:CDS |
| TGACTCTCTGATGATGATGA+TGG | 0.562810 | 1.1:-1920040 | None:intergenic |
| AGTTCCTCCTTCTTGGACTG+AGG | 0.564508 | 1.1:-1921257 | None:intergenic |
| ATCATCATCAGAGAGTCAAT+GGG | 0.565599 | 1.1:+1920045 | MS.gene24262:CDS |
| CCCATATCCTCAGTCCAAGA+AGG | 0.570053 | 1.1:+1921250 | MS.gene24262:CDS |
| GCTACAAGTGCTCGGCGAGA+TGG | 0.582646 | 1.1:-1920133 | None:intergenic |
| TTGCAGATTCATGCTCATTG+TGG | 0.583392 | 1.1:-1921309 | None:intergenic |
| CGAGAGGTCCAAGGCGAATG+CGG | 0.591010 | 1.1:+1921209 | MS.gene24262:CDS |
| CTCAATGTTCTTCGTACGAG+AGG | 0.596421 | 1.1:+1921193 | MS.gene24262:CDS |
| GGCACGAACAACTGCAATGT+TGG | 0.597004 | 1.1:+1921422 | MS.gene24262:CDS |
| GAGAGGATATCGATAATCCA+TGG | 0.599763 | 1.1:-1921590 | None:intergenic |
| ATTAGACATAATTCAAAGGG+TGG | 0.608482 | 1.1:+1920090 | MS.gene24262:CDS |
| TTCTTCGTACGAGAGGTCCA+AGG | 0.616949 | 1.1:+1921200 | MS.gene24262:CDS |
| ACTAAGCATATGCATAGACA+TGG | 0.617362 | 1.1:+1919959 | MS.gene24262:CDS |
| GCTGCTCAAACAGATTGCAA+AGG | 0.630739 | 1.1:-1921626 | None:intergenic |
| ATTGGCAACATGTATAGAAG+AGG | 0.636703 | 1.1:+1919929 | MS.gene24262:CDS |
| CGGGAAGGACATATTCACCA+TGG | 0.637363 | 1.1:+1921573 | MS.gene24262:CDS |
| TGGAAGCTAGTGAAACCACT+TGG | 0.639315 | 1.1:+1920110 | MS.gene24262:CDS |
| TTTCAAGGGACGGGTTACAG+TGG | 0.641025 | 1.1:+1921453 | MS.gene24262:CDS |
| AGGCACAAGCTACAAGTGCT+CGG | 0.645228 | 1.1:-1920141 | None:intergenic |
| TATGAAGCAAGTACTTCCAA+GGG | 0.646074 | 1.1:+1921129 | MS.gene24262:CDS |
| ATGTCTAATAGTAACTCAGG+AGG | 0.663267 | 1.1:-1920076 | None:intergenic |
| AAGGCTTGAAAAGCAGAGAG+AGG | 0.664732 | 1.1:-1921607 | None:intergenic |
| TTAGATGGTCATCCTCCACA+TGG | 0.666654 | 1.1:+1921064 | MS.gene24262:CDS |
| ATTATGGAGAGACATAACAA+AGG | 0.674047 | 1.1:+1920174 | MS.gene24262:CDS |
| ATATCCTCAGTCCAAGAAGG+AGG | 0.677852 | 1.1:+1921253 | MS.gene24262:CDS |
| TCTCCATAATCTACAAACTG+AGG | 0.678466 | 1.1:-1920161 | None:intergenic |
| TGCTCGGCGAGATGGCCAAG+TGG | 0.681754 | 1.1:-1920125 | None:intergenic |
| TGCTGATAGTGATATTGGTG+AGG | 0.701371 | 1.1:-1920008 | None:intergenic |
| GGAAGCGAAGAACCATGTGG+AGG | 0.740469 | 1.1:-1921076 | None:intergenic |
| GATGGAAGCGAAGAACCATG+TGG | 0.748476 | 1.1:-1921079 | None:intergenic |
| GTTAAGACACTTGAACAGTG+TGG | 0.771470 | 1.1:+1920202 | MS.gene24262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAGCCTAAAAGA+AGG | - | chr1.1:1920591-1920610 | None:intergenic | 20.0% |
| !! | AATAACACAATTCACAAATA+TGG | - | chr1.1:1920782-1920801 | None:intergenic | 20.0% |
| !! | ACATGAAATTATTCTCTATT+TGG | + | chr1.1:1920477-1920496 | MS.gene24262:intron | 20.0% |
| !! | ACTATTAGACATAATTCAAA+GGG | + | chr1.1:1920087-1920106 | MS.gene24262:CDS | 20.0% |
| !! | ATACTACAATTTGGAAAAAT+CGG | + | chr1.1:1921553-1921572 | MS.gene24262:CDS | 20.0% |
| !! | GAAAAAGTTATACTACAATT+TGG | + | chr1.1:1921544-1921563 | MS.gene24262:CDS | 20.0% |
| !! | TAATCATTAAGCAAAATAAC+AGG | + | chr1.1:1921011-1921030 | MS.gene24262:intron | 20.0% |
| !! | TACTATTAGACATAATTCAA+AGG | + | chr1.1:1920086-1920105 | MS.gene24262:CDS | 20.0% |
| !!! | CACAGAATTTTTAATATCAT+TGG | + | chr1.1:1920877-1920896 | MS.gene24262:CDS | 20.0% |
| !!! | TGTAATTTTTGTTTTAAGCT+TGG | + | chr1.1:1920292-1920311 | MS.gene24262:intron | 20.0% |
| !!! | TTTGGTAACAAAATTTTGTT+TGG | + | chr1.1:1920495-1920514 | MS.gene24262:intron | 20.0% |
| ! | ACCAAGATATAAACTATATG+TGG | - | chr1.1:1920430-1920449 | None:intergenic | 25.0% |
| ! | ATACTTACATTGGAAAGTTA+AGG | + | chr1.1:1920927-1920946 | MS.gene24262:CDS | 25.0% |
| ! | ATTATGTCTAATAGTAACTC+AGG | - | chr1.1:1920082-1920101 | None:intergenic | 25.0% |
| ! | CTCTTAATAAAACACTGAAT+TGG | - | chr1.1:1920393-1920412 | None:intergenic | 25.0% |
| ! | GTTCAAAGACTAAAAAAAGA+AGG | - | chr1.1:1920697-1920716 | None:intergenic | 25.0% |
| ! | TACTACAATTTGGAAAAATC+GGG | + | chr1.1:1921554-1921573 | MS.gene24262:CDS | 25.0% |
| ! | TCCACATATAGTTTATATCT+TGG | + | chr1.1:1920426-1920445 | MS.gene24262:CDS | 25.0% |
| !! | AACTTGAATTACCTTCTTTT+AGG | + | chr1.1:1920577-1920596 | MS.gene24262:intron | 25.0% |
| !! | AATAACAGGTCTAATTTTCT+CGG | + | chr1.1:1921025-1921044 | MS.gene24262:intron | 25.0% |
| !!! | AGTGTTTTATTAAGAGAGAA+AGG | + | chr1.1:1920397-1920416 | MS.gene24262:CDS | 25.0% |
| !!! | ATTGATTTGTAAGTTTACTC+TGG | - | chr1.1:1920648-1920667 | None:intergenic | 25.0% |
| !!! | GTGTTTTATTAAGAGAGAAA+GGG | + | chr1.1:1920398-1920417 | MS.gene24262:CDS | 25.0% |
| AGAGCTAACAATACTTACAT+TGG | + | chr1.1:1920917-1920936 | MS.gene24262:CDS | 30.0% | |
| ATTAGACATAATTCAAAGGG+TGG | + | chr1.1:1920090-1920109 | MS.gene24262:CDS | 30.0% | |
| ATTATGGAGAGACATAACAA+AGG | + | chr1.1:1920174-1920193 | MS.gene24262:CDS | 30.0% | |
| CACAAATCGAGAATAGTTAA+CGG | - | chr1.1:1920741-1920760 | None:intergenic | 30.0% | |
| TTATGGAGAGACATAACAAA+GGG | + | chr1.1:1920175-1920194 | MS.gene24262:CDS | 30.0% | |
| ! | AATCAATCCACATCTTTTCA+TGG | + | chr1.1:1920961-1920980 | MS.gene24262:intron | 30.0% |
| ! | ATGTTGGTGTTTGAATTTCA+AGG | + | chr1.1:1921438-1921457 | MS.gene24262:CDS | 30.0% |
| ! | TAACTATTCTCGATTTGTGA+AGG | + | chr1.1:1920742-1920761 | MS.gene24262:intron | 30.0% |
| ! | TGTTGGTGTTTGAATTTCAA+GGG | + | chr1.1:1921439-1921458 | MS.gene24262:CDS | 30.0% |
| !!! | GCTTTGTTTTTCAAAATCAG+AGG | - | chr1.1:1921394-1921413 | None:intergenic | 30.0% |
| AAGCCAGAAGTTGTTGAATT+TGG | + | chr1.1:1921340-1921359 | MS.gene24262:CDS | 35.0% | |
| AAGTTGCAAGTTGCAACAAA+AGG | + | chr1.1:1921102-1921121 | MS.gene24262:CDS | 35.0% | |
| ACAATTTGGAAAAATCGGGA+AGG | + | chr1.1:1921558-1921577 | MS.gene24262:CDS | 35.0% | |
| ACTAAGCATATGCATAGACA+TGG | + | chr1.1:1919959-1919978 | MS.gene24262:CDS | 35.0% | |
| AGAACCTAGCCAAAATGTTT+CGG | + | chr1.1:1921510-1921529 | MS.gene24262:CDS | 35.0% | |
| ATATGAAGCAAGTACTTCCA+AGG | + | chr1.1:1921128-1921147 | MS.gene24262:CDS | 35.0% | |
| ATCATCATCAGAGAGTCAAT+GGG | + | chr1.1:1920045-1920064 | MS.gene24262:CDS | 35.0% | |
| ATGTCTAATAGTAACTCAGG+AGG | - | chr1.1:1920079-1920098 | None:intergenic | 35.0% | |
| ATTACCTGCTTCAGTGATAT+AGG | - | chr1.1:1920241-1920260 | None:intergenic | 35.0% | |
| ATTGGCAACATGTATAGAAG+AGG | + | chr1.1:1919929-1919948 | MS.gene24262:CDS | 35.0% | |
| GCATTAACCATGAAAAGATG+TGG | - | chr1.1:1920971-1920990 | None:intergenic | 35.0% | |
| TATGAAGCAAGTACTTCCAA+GGG | + | chr1.1:1921129-1921148 | MS.gene24262:CDS | 35.0% | |
| TATGTATTTGCAGCTCTTTC+TGG | + | chr1.1:1920803-1920822 | MS.gene24262:intron | 35.0% | |
| TCTCCATAATCTACAAACTG+AGG | - | chr1.1:1920164-1920183 | None:intergenic | 35.0% | |
| TGATATGAGCAAACTTCTCT+TGG | + | chr1.1:1920826-1920845 | MS.gene24262:CDS | 35.0% | |
| TGGCAATTGGTAAATTCCAT+AGG | - | chr1.1:1921292-1921311 | None:intergenic | 35.0% | |
| TTACCTGCTTCAGTGATATA+GGG | - | chr1.1:1920240-1920259 | None:intergenic | 35.0% | |
| TTGGTAAATTCCATAGGAGT+AGG | - | chr1.1:1921286-1921305 | None:intergenic | 35.0% | |
| ! | GAAAAGATGTGGATTGATTG+AGG | - | chr1.1:1920960-1920979 | None:intergenic | 35.0% |
| ! | TGAAAAACAAAGCACCAAGA+TGG | + | chr1.1:1921401-1921420 | MS.gene24262:CDS | 35.0% |
| !! | GTTGCTACTTTATAGTTAGC+AGG | - | chr1.1:1921160-1921179 | None:intergenic | 35.0% |
| !! | GTTTTAAGCTTGGAAGAACA+TGG | + | chr1.1:1920302-1920321 | MS.gene24262:intron | 35.0% |
| !! | TTGGAAGTACTTGCTTCATA+TGG | - | chr1.1:1921129-1921148 | None:intergenic | 35.0% |
| AAGGAGATGAAAGAGGGAAT+TGG | + | chr1.1:1919911-1919930 | MS.gene24262:CDS | 40.0% | |
| ACCAAGTTCACGATCTTAGA+TGG | + | chr1.1:1921049-1921068 | MS.gene24262:CDS | 40.0% | |
| CACTGAATTGGATTGTCTCT+TGG | - | chr1.1:1920381-1920400 | None:intergenic | 40.0% | |
| CATCATCATCAGAGAGTCAA+TGG | + | chr1.1:1920044-1920063 | MS.gene24262:CDS | 40.0% | |
| GAGAGGATATCGATAATCCA+TGG | - | chr1.1:1921593-1921612 | None:intergenic | 40.0% | |
| GAGCCAAATTCAACAACTTC+TGG | - | chr1.1:1921346-1921365 | None:intergenic | 40.0% | |
| GATATTGGTGAGGAACATTC+TGG | - | chr1.1:1920001-1920020 | None:intergenic | 40.0% | |
| GGTGTTTGAATTTCAAGGGA+CGG | + | chr1.1:1921443-1921462 | MS.gene24262:CDS | 40.0% | |
| GTGCCTCAGTTTGTAGATTA+TGG | + | chr1.1:1920158-1920177 | MS.gene24262:CDS | 40.0% | |
| GTGTTTGAATTTCAAGGGAC+GGG | + | chr1.1:1921444-1921463 | MS.gene24262:CDS | 40.0% | |
| GTTAAGACACTTGAACAGTG+TGG | + | chr1.1:1920202-1920221 | MS.gene24262:CDS | 40.0% | |
| TGAGCACAACAATCTTACCA+GGG | - | chr1.1:1920458-1920477 | None:intergenic | 40.0% | |
| TGTTGCAACTTGCAACTTGA+TGG | - | chr1.1:1921100-1921119 | None:intergenic | 40.0% | |
| TTATATCTTGGTCTAAGCCC+TGG | + | chr1.1:1920438-1920457 | MS.gene24262:CDS | 40.0% | |
| TTCATGCTCATTGTGGCAAT+TGG | - | chr1.1:1921305-1921324 | None:intergenic | 40.0% | |
| TTGCAGATTCATGCTCATTG+TGG | - | chr1.1:1921312-1921331 | None:intergenic | 40.0% | |
| TTTCCCTATATCACTGAAGC+AGG | + | chr1.1:1920234-1920253 | MS.gene24262:CDS | 40.0% | |
| ! | ACCATCTAAGATCGTGAACT+TGG | - | chr1.1:1921053-1921072 | None:intergenic | 40.0% |
| ! | TGACTCTCTGATGATGATGA+TGG | - | chr1.1:1920043-1920062 | None:intergenic | 40.0% |
| ! | TGCTGATAGTGATATTGGTG+AGG | - | chr1.1:1920011-1920030 | None:intergenic | 40.0% |
| !! | GATGATGATGATGGTGTTGT+TGG | - | chr1.1:1920034-1920053 | None:intergenic | 40.0% |
| !! | GTTGGTGCTGATAGTGATAT+TGG | - | chr1.1:1920016-1920035 | None:intergenic | 40.0% |
| AAGGCTTGAAAAGCAGAGAG+AGG | - | chr1.1:1921610-1921629 | None:intergenic | 45.0% | |
| ATATCCTCAGTCCAAGAAGG+AGG | + | chr1.1:1921253-1921272 | MS.gene24262:CDS | 45.0% | |
| ATTGGATTGTCTCTTGGAGC+AGG | - | chr1.1:1920375-1920394 | None:intergenic | 45.0% | |
| CCTTCTTGGACTGAGGATAT+GGG | - | chr1.1:1921253-1921272 | None:intergenic | 45.0% | |
| CTCAATGTTCTTCGTACGAG+AGG | + | chr1.1:1921193-1921212 | MS.gene24262:CDS | 45.0% | |
| CTTCTTGGACTGAGGATATG+GGG | - | chr1.1:1921252-1921271 | None:intergenic | 45.0% | |
| GCTGCTCAAACAGATTGCAA+AGG | - | chr1.1:1921629-1921648 | None:intergenic | 45.0% | |
| GTGAGCACAACAATCTTACC+AGG | - | chr1.1:1920459-1920478 | None:intergenic | 45.0% | |
| TCCTTCTTGGACTGAGGATA+TGG | - | chr1.1:1921254-1921273 | None:intergenic | 45.0% | |
| TGGAAGCTAGTGAAACCACT+TGG | + | chr1.1:1920110-1920129 | MS.gene24262:CDS | 45.0% | |
| TTAGATGGTCATCCTCCACA+TGG | + | chr1.1:1921064-1921083 | MS.gene24262:CDS | 45.0% | |
| ! | GTTCTGCAGCCGAAACATTT+TGG | - | chr1.1:1921522-1921541 | None:intergenic | 45.0% |
| AGACACTTGAACAGTGTGGC+TGG | + | chr1.1:1920206-1920225 | MS.gene24262:CDS | 50.0% | |
| AGGAACTGCTCCTACTCCTA+TGG | + | chr1.1:1921273-1921292 | MS.gene24262:CDS | 50.0% | |
| AGGCACAAGCTACAAGTGCT+CGG | - | chr1.1:1920144-1920163 | None:intergenic | 50.0% | |
| AGTTCCTCCTTCTTGGACTG+AGG | - | chr1.1:1921260-1921279 | None:intergenic | 50.0% | |
| CCCATATCCTCAGTCCAAGA+AGG | + | chr1.1:1921250-1921269 | MS.gene24262:CDS | 50.0% | |
| CGGGAAGGACATATTCACCA+TGG | + | chr1.1:1921573-1921592 | MS.gene24262:CDS | 50.0% | |
| GATGGAAGCGAAGAACCATG+TGG | - | chr1.1:1921082-1921101 | None:intergenic | 50.0% | |
| GGCACGAACAACTGCAATGT+TGG | + | chr1.1:1921422-1921441 | MS.gene24262:CDS | 50.0% | |
| TAGGAGCAGTTCCTCCTTCT+TGG | - | chr1.1:1921267-1921286 | None:intergenic | 50.0% | |
| TGCAGTTGTTCGTGCCATCT+TGG | - | chr1.1:1921418-1921437 | None:intergenic | 50.0% | |
| TTCTTCGTACGAGAGGTCCA+AGG | + | chr1.1:1921200-1921219 | MS.gene24262:CDS | 50.0% | |
| !! | TTTCAAGGGACGGGTTACAG+TGG | + | chr1.1:1921453-1921472 | MS.gene24262:CDS | 50.0% |
| !!! | GCAGCCGAAACATTTTGGCT+AGG | - | chr1.1:1921517-1921536 | None:intergenic | 50.0% |
| GGAAGCGAAGAACCATGTGG+AGG | - | chr1.1:1921079-1921098 | None:intergenic | 55.0% | |
| TAGTTAGCAGGAGCAGCCCT+TGG | - | chr1.1:1921148-1921167 | None:intergenic | 55.0% | |
| ATCGTGCTCCGCATTCGCCT+TGG | - | chr1.1:1921220-1921239 | None:intergenic | 60.0% | |
| CGAGAGGTCCAAGGCGAATG+CGG | + | chr1.1:1921209-1921228 | MS.gene24262:CDS | 60.0% | |
| GCTACAAGTGCTCGGCGAGA+TGG | - | chr1.1:1920136-1920155 | None:intergenic | 60.0% | |
| !! | GGGACGGGTTACAGTGGCTT+CGG | + | chr1.1:1921459-1921478 | MS.gene24262:CDS | 60.0% |
| TGCTCGGCGAGATGGCCAAG+TGG | - | chr1.1:1920128-1920147 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1919908 | 1921675 | 1919908 | ID=MS.gene24262 |
| chr1.1 | mRNA | 1919908 | 1921675 | 1919908 | ID=MS.gene24262.t1;Parent=MS.gene24262 |
| chr1.1 | exon | 1919908 | 1920255 | 1919908 | ID=MS.gene24262.t1.exon1;Parent=MS.gene24262.t1 |
| chr1.1 | CDS | 1919908 | 1920255 | 1919908 | ID=cds.MS.gene24262.t1;Parent=MS.gene24262.t1 |
| chr1.1 | exon | 1920372 | 1920459 | 1920372 | ID=MS.gene24262.t1.exon2;Parent=MS.gene24262.t1 |
| chr1.1 | CDS | 1920372 | 1920459 | 1920372 | ID=cds.MS.gene24262.t1;Parent=MS.gene24262.t1 |
| chr1.1 | exon | 1920816 | 1920948 | 1920816 | ID=MS.gene24262.t1.exon3;Parent=MS.gene24262.t1 |
| chr1.1 | CDS | 1920816 | 1920948 | 1920816 | ID=cds.MS.gene24262.t1;Parent=MS.gene24262.t1 |
| chr1.1 | exon | 1921033 | 1921675 | 1921033 | ID=MS.gene24262.t1.exon4;Parent=MS.gene24262.t1 |
| chr1.1 | CDS | 1921033 | 1921675 | 1921033 | ID=cds.MS.gene24262.t1;Parent=MS.gene24262.t1 |
| Gene Sequence |
| Protein sequence |
