Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010525.t1 | XP_003612033.1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 2.20E-228 | 801.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010525.t1 | Q6Z2G9 | 62.1 | 422 | 136 | 7 | 1 | 404 | 13 | 428 | 8.7e-141 | 501.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010525.t1 | G7KEX1 | 97.5 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 1.6e-228 | 801.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene010525.t1 | TF | TUB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene010525 | MS.gene26978 | PPI |
MS.gene27297 | MS.gene010525 | PPI |
MS.gene90691 | MS.gene010525 | PPI |
MS.gene010525 | MS.gene24262 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010525.t1 | MTR_5g020580 | 97.525 | 404 | 10 | 0 | 1 | 404 | 13 | 416 | 0.0 | 819 |
MS.gene010525.t1 | MTR_8g077195 | 74.505 | 404 | 99 | 2 | 1 | 404 | 13 | 412 | 0.0 | 631 |
MS.gene010525.t1 | MTR_1g022370 | 62.796 | 422 | 127 | 8 | 1 | 404 | 13 | 422 | 0.0 | 510 |
MS.gene010525.t1 | MTR_8g077620 | 57.855 | 401 | 134 | 9 | 1 | 395 | 13 | 384 | 3.07e-156 | 446 |
MS.gene010525.t1 | MTR_8g077675 | 58.354 | 401 | 145 | 9 | 1 | 397 | 13 | 395 | 2.70e-155 | 444 |
MS.gene010525.t1 | MTR_2g007930 | 54.976 | 422 | 168 | 11 | 1 | 404 | 10 | 427 | 3.09e-150 | 432 |
MS.gene010525.t1 | MTR_2g020280 | 57.182 | 369 | 151 | 3 | 36 | 404 | 32 | 393 | 3.07e-149 | 428 |
MS.gene010525.t1 | MTR_1g098790 | 53.037 | 428 | 171 | 11 | 1 | 404 | 10 | 431 | 1.08e-145 | 421 |
MS.gene010525.t1 | MTR_1g088960 | 53.846 | 403 | 176 | 6 | 2 | 404 | 10 | 402 | 3.34e-144 | 416 |
MS.gene010525.t1 | MTR_2g076200 | 50.829 | 362 | 146 | 2 | 43 | 404 | 42 | 371 | 3.27e-127 | 372 |
MS.gene010525.t1 | MTR_8g077650 | 51.786 | 392 | 113 | 12 | 25 | 401 | 3 | 333 | 5.32e-119 | 349 |
MS.gene010525.t1 | MTR_2g020280 | 58.140 | 301 | 119 | 3 | 104 | 404 | 1 | 294 | 3.51e-118 | 345 |
MS.gene010525.t1 | MTR_2g076210 | 44.772 | 373 | 167 | 6 | 36 | 404 | 30 | 367 | 4.32e-101 | 305 |
MS.gene010525.t1 | MTR_8g077640 | 59.242 | 211 | 60 | 5 | 4 | 195 | 57 | 260 | 6.34e-65 | 212 |
MS.gene010525.t1 | MTR_8g077640 | 55.556 | 117 | 51 | 1 | 279 | 394 | 267 | 383 | 1.75e-33 | 129 |
MS.gene010525.t1 | MTR_1g023800 | 52.667 | 150 | 66 | 2 | 1 | 149 | 13 | 158 | 1.25e-49 | 165 |
MS.gene010525.t1 | MTR_0210s0010 | 71.134 | 97 | 22 | 1 | 86 | 182 | 9 | 99 | 2.50e-37 | 131 |
MS.gene010525.t1 | MTR_0479s0040 | 74.286 | 70 | 12 | 1 | 102 | 171 | 12 | 75 | 2.58e-25 | 98.6 |
MS.gene010525.t1 | MTR_2g105390 | 36.697 | 109 | 54 | 4 | 301 | 403 | 260 | 359 | 1.93e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010525.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene010525.t1 | AT2G18280 | 63.547 | 406 | 121 | 7 | 1 | 404 | 13 | 393 | 4.08e-177 | 499 |
MS.gene010525.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 16 | 388 | 5.55e-155 | 443 |
MS.gene010525.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 40 | 412 | 9.17e-155 | 443 |
MS.gene010525.t1 | AT1G47270 | 58.333 | 396 | 131 | 9 | 20 | 404 | 41 | 413 | 9.39e-155 | 443 |
MS.gene010525.t1 | AT1G25280 | 53.899 | 436 | 169 | 8 | 1 | 404 | 10 | 445 | 1.69e-151 | 436 |
MS.gene010525.t1 | AT2G47900 | 54.433 | 406 | 175 | 4 | 1 | 404 | 10 | 407 | 2.27e-150 | 432 |
MS.gene010525.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene010525.t1 | AT2G47900 | 54.568 | 405 | 175 | 4 | 1 | 404 | 10 | 406 | 3.79e-150 | 431 |
MS.gene010525.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010525.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010525.t1 | AT1G76900 | 50.667 | 450 | 172 | 8 | 1 | 404 | 10 | 455 | 3.97e-142 | 412 |
MS.gene010525.t1 | AT1G43640 | 50.000 | 430 | 179 | 11 | 1 | 404 | 10 | 429 | 1.46e-140 | 408 |
MS.gene010525.t1 | AT5G18680 | 53.887 | 373 | 147 | 7 | 39 | 404 | 35 | 389 | 2.52e-130 | 380 |
MS.gene010525.t1 | AT1G43640 | 52.151 | 372 | 147 | 9 | 55 | 404 | 1 | 363 | 1.37e-128 | 375 |
MS.gene010525.t1 | AT3G06380 | 51.671 | 389 | 168 | 7 | 19 | 404 | 9 | 380 | 2.76e-128 | 375 |
MS.gene010525.t1 | AT1G53320 | 51.934 | 362 | 148 | 3 | 43 | 404 | 44 | 379 | 1.78e-124 | 365 |
MS.gene010525.t1 | AT5G18680 | 54.369 | 309 | 117 | 6 | 102 | 404 | 7 | 297 | 1.22e-105 | 314 |
MS.gene010525.t1 | AT3G06380 | 54.153 | 301 | 119 | 6 | 106 | 404 | 5 | 288 | 1.71e-101 | 303 |
MS.gene010525.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene010525.t1 | AT1G25280 | 56.180 | 267 | 93 | 6 | 162 | 404 | 1 | 267 | 8.15e-95 | 285 |
MS.gene010525.t1 | AT1G61940 | 50.575 | 87 | 43 | 0 | 46 | 132 | 1 | 87 | 3.82e-26 | 106 |
MS.gene010525.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 46 | 106 | 1 | 61 | 5.83e-16 | 77.4 |
Find 105 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCTGCTGGACCGGCTATT+TGG | 0.209525 | 5.2:+11828886 | None:intergenic |
CCAATTGGATCTTTACCTTT+TGG | 0.222216 | 5.2:+11828640 | None:intergenic |
TAACACGGCCCTTGAAATTT+AGG | 0.254077 | 5.2:+11828503 | None:intergenic |
CCAGCAGGAGATTTCATTCT+AGG | 0.267212 | 5.2:-11828873 | MS.gene010525:CDS |
TGGAAAAGATATATTTACTA+TGG | 0.274718 | 5.2:-11828377 | MS.gene010525:CDS |
CACAGACTTCATCATATCTT+TGG | 0.281729 | 5.2:-11829115 | MS.gene010525:CDS |
ATCACCTGCTTTAACGAAAT+AGG | 0.313540 | 5.2:+11830410 | None:intergenic |
TTGCAGCTGTTCATGCCATC+TGG | 0.337933 | 5.2:+11828534 | None:intergenic |
ATCTTGCAGTTTGGAAAGAT+TGG | 0.342353 | 5.2:-11828397 | MS.gene010525:CDS |
CGTCAATCTTCCACACTCTT+CGG | 0.347596 | 5.2:+11830436 | None:intergenic |
TTCAACCCTCGCAGAGTTGC+CGG | 0.349688 | 5.2:-11828605 | MS.gene010525:CDS |
GTCAATCTTCCACACTCTTC+GGG | 0.352453 | 5.2:+11830437 | None:intergenic |
GAGAAGGTTATCTTGCAGTT+TGG | 0.354935 | 5.2:-11828406 | MS.gene010525:CDS |
TATACCTGTCTCAGCTGTTC+AGG | 0.357164 | 5.2:-11828740 | MS.gene010525:CDS |
TAGAAGAGACTGAGACTTCT+TGG | 0.372030 | 5.2:-11830538 | MS.gene010525:CDS |
TCTGCATATCTATTGTACTA+TGG | 0.382229 | 5.2:-11830234 | MS.gene010525:CDS |
ATGATGCAATTCATTCTTCT+CGG | 0.382856 | 5.2:+11828769 | None:intergenic |
CCAAGGGCCATTTGAGTCTC+TGG | 0.405945 | 5.2:-11828575 | MS.gene010525:CDS |
ATAACCTTCTCTTGCTCTGC+AGG | 0.415381 | 5.2:+11828418 | None:intergenic |
ATGCTGGTGCCTAAATTTCA+AGG | 0.430024 | 5.2:-11828512 | MS.gene010525:CDS |
TGAGGAAAAGATGTAGGAGT+TGG | 0.437219 | 5.2:+11828703 | None:intergenic |
ACCTATTCAGCAGGGACAAT+GGG | 0.444059 | 5.2:-11830603 | MS.gene010525:CDS |
AGTGATGTTAGAGTGATATC+AGG | 0.447610 | 5.2:+11830629 | None:intergenic |
GAATTGCTTAAATCTCCAAT+TGG | 0.451744 | 5.2:+11828625 | None:intergenic |
TGGAGGTTGGCTGTCATATA+TGG | 0.452519 | 5.2:+11828927 | None:intergenic |
CTCCGATACAGTGCTTCATC+AGG | 0.459633 | 5.2:-11830272 | MS.gene010525:CDS |
GCCCATTGTCCCTGCTGAAT+AGG | 0.468212 | 5.2:+11830602 | None:intergenic |
CCAAAAGGTAAAGATCCAAT+TGG | 0.470093 | 5.2:-11828640 | MS.gene010525:CDS |
ATCACTTGAACCTATTCAGC+AGG | 0.471218 | 5.2:-11830612 | MS.gene010525:CDS |
TAGTTACACGCTGGAACTCT+TGG | 0.471948 | 5.2:+11828841 | None:intergenic |
AGCCAACCTCCACACGGAGC+TGG | 0.473234 | 5.2:-11828916 | MS.gene010525:CDS |
GGCATGAACAGCTGCAATGC+TGG | 0.474704 | 5.2:-11828528 | MS.gene010525:CDS |
AATGAAATCTCCTGCTGGAC+CGG | 0.476146 | 5.2:+11828878 | None:intergenic |
GCGGAGAACATTCAGCTCAT+AGG | 0.477645 | 5.2:+11828801 | None:intergenic |
AACTCAAGGAGATGAGGGAT+GGG | 0.484739 | 5.2:-11830721 | None:intergenic |
CTGAATGTTCTCCGCACTAG+AGG | 0.484848 | 5.2:-11828793 | MS.gene010525:CDS |
CGTTCCAGCAATGCGTATGT+TGG | 0.488866 | 5.2:-11829075 | MS.gene010525:CDS |
AACCAAATAGCCGGTCCAGC+AGG | 0.493265 | 5.2:-11828888 | MS.gene010525:CDS |
AATGGCCCTTGGCTCTGAAC+CGG | 0.498889 | 5.2:+11828586 | None:intergenic |
GTAATTTGAGGAAAAGATGT+AGG | 0.503684 | 5.2:+11828697 | None:intergenic |
GAACTCAAGGAGATGAGGGA+TGG | 0.505860 | 5.2:-11830722 | None:intergenic |
TGCAGCTGTTCATGCCATCT+GGG | 0.506117 | 5.2:+11828535 | None:intergenic |
GTTTCCTATTTCGTTAAAGC+AGG | 0.506221 | 5.2:-11830414 | MS.gene010525:intron |
AAATGTTCATCAGTAATTTG+AGG | 0.509198 | 5.2:+11828685 | None:intergenic |
CCTTCCTGAACAGCTGAGAC+AGG | 0.514005 | 5.2:+11828736 | None:intergenic |
GAGTTGCCGGTTCAGAGCCA+AGG | 0.518280 | 5.2:-11828592 | MS.gene010525:CDS |
CAGGAGATTTCATTCTAGGC+AGG | 0.528326 | 5.2:-11828869 | MS.gene010525:CDS |
CATGGATCTCATTCACATGC+TGG | 0.528401 | 5.2:+11828289 | None:intergenic |
TTGAGTACCAGAGACTCAAA+TGG | 0.530012 | 5.2:+11828568 | None:intergenic |
AGTTAAGAACTTTCAACTTG+TGG | 0.534362 | 5.2:-11828470 | MS.gene010525:CDS |
GAAACGACAACAGCACGTGC+AGG | 0.536741 | 5.2:+11830515 | None:intergenic |
CCTAGAATGAAATCTCCTGC+TGG | 0.538624 | 5.2:+11828873 | None:intergenic |
CCTGTCTCAGCTGTTCAGGA+AGG | 0.540458 | 5.2:-11828736 | MS.gene010525:CDS |
CTGTCTCAGCTGTTCAGGAA+GGG | 0.541956 | 5.2:-11828735 | MS.gene010525:CDS |
CGAGGAGAGGTGTGGCAAGT+AGG | 0.542255 | 5.2:-11830685 | MS.gene010525:CDS |
GCATATCGCAAAGGCTTGGA+AGG | 0.543599 | 5.2:+11828333 | None:intergenic |
GCTGTCATATATGGTGAACT+TGG | 0.544644 | 5.2:+11828936 | None:intergenic |
GTGCTTCTGTGTGTAAATCA+TGG | 0.549837 | 5.2:-11830490 | MS.gene010525:CDS |
CCAGAGACTCAAATGGCCCT+TGG | 0.550663 | 5.2:+11828575 | None:intergenic |
TTCCAGCTCCGTGTGGAGGT+TGG | 0.551308 | 5.2:+11828914 | None:intergenic |
AACCTATTCAGCAGGGACAA+TGG | 0.551680 | 5.2:-11830604 | MS.gene010525:CDS |
TCTGAACCGGCAACTCTGCG+AGG | 0.556736 | 5.2:+11828599 | None:intergenic |
AAGGAGATGAGGGATGGGAT+TGG | 0.557067 | 5.2:-11830716 | None:intergenic |
TGCTACTTGATATAATTCGA+AGG | 0.558581 | 5.2:-11830562 | MS.gene010525:CDS |
TGTCTCAGCTGTTCAGGAAG+GGG | 0.560697 | 5.2:-11828734 | MS.gene010525:CDS |
ATCGGAGAATCACGAGGACC+CGG | 0.561657 | 5.2:+11830288 | None:intergenic |
CTCCTGATGAAGCACTGTAT+CGG | 0.562380 | 5.2:+11830270 | None:intergenic |
TTCTTCTCGGCCCTCTAGTG+CGG | 0.564773 | 5.2:+11828782 | None:intergenic |
GTCTCAGCTGTTCAGGAAGG+GGG | 0.566290 | 5.2:-11828733 | MS.gene010525:CDS |
CTGAACCGGCAACTCTGCGA+GGG | 0.569008 | 5.2:+11828600 | None:intergenic |
ATATCTATTGTACTATGGAC+TGG | 0.572719 | 5.2:-11830229 | MS.gene010525:CDS |
GCTACTTGATATAATTCGAA+GGG | 0.575810 | 5.2:-11830561 | MS.gene010525:CDS |
GCGTCAGCACCAGAGCCAAA+AGG | 0.578551 | 5.2:-11828655 | MS.gene010525:CDS |
TCAAGCATATCGCAAAGGCT+TGG | 0.579509 | 5.2:+11828329 | None:intergenic |
AACATTCAGCTCATAGGCAA+TGG | 0.582469 | 5.2:+11828807 | None:intergenic |
CTGGAATACAACCAAATAGC+CGG | 0.589720 | 5.2:-11828897 | MS.gene010525:CDS |
CGATACAGTGCTTCATCAGG+AGG | 0.590035 | 5.2:-11830269 | MS.gene010525:CDS |
CTGAACAATCTCTTGTGTAA+CGG | 0.594307 | 5.2:+11830463 | None:intergenic |
TTCTCCTGCAGAGCAAGAGA+AGG | 0.597006 | 5.2:-11828422 | MS.gene010525:CDS |
ATGCGTATGTTGGAAAACTC+AGG | 0.602255 | 5.2:-11829065 | MS.gene010525:intron |
AGTTGCCGGTTCAGAGCCAA+GGG | 0.602888 | 5.2:-11828591 | MS.gene010525:CDS |
GCAGGAGAAACATTATGAGA+TGG | 0.604319 | 5.2:+11828436 | None:intergenic |
CAAGTAGGCATTCACAGCGT+CGG | 0.608761 | 5.2:-11830670 | MS.gene010525:CDS |
GGAAGGCAGAGAGTGGATAA+CGG | 0.610357 | 5.2:+11828350 | None:intergenic |
GCTGCTCAAGCATATCGCAA+AGG | 0.610612 | 5.2:+11828324 | None:intergenic |
TTTCAAGGGCCGTGTTACAG+TGG | 0.611483 | 5.2:-11828497 | MS.gene010525:CDS |
TGAATGTTCTCCGCACTAGA+GGG | 0.618617 | 5.2:-11828792 | MS.gene010525:CDS |
AAGGCTTGGAAGGCAGAGAG+TGG | 0.622272 | 5.2:+11828343 | None:intergenic |
TTCTGTGTGTAAATCATGGA+GGG | 0.630242 | 5.2:-11830486 | MS.gene010525:CDS |
AGATATGATGAAGTCTGTGC+CGG | 0.635175 | 5.2:+11829119 | None:intergenic |
GTTCAGACTCCCGAAGAGTG+TGG | 0.642949 | 5.2:-11830446 | MS.gene010525:CDS |
TGCTGGTGCCTAAATTTCAA+GGG | 0.642974 | 5.2:-11828511 | MS.gene010525:CDS |
TAACTGAAGCCACTGTAACA+CGG | 0.643817 | 5.2:+11828488 | None:intergenic |
TGTATTCCAGCTCCGTGTGG+AGG | 0.645160 | 5.2:+11828910 | None:intergenic |
CTTCTGTGTGTAAATCATGG+AGG | 0.649209 | 5.2:-11830487 | MS.gene010525:CDS |
ATTGGTAATACGTCGAGGAG+AGG | 0.649495 | 5.2:-11830698 | MS.gene010525:CDS |
ATATCAAGTAGCAATTCAGA+TGG | 0.650336 | 5.2:+11830572 | None:intergenic |
GGTTGTATTCCAGCTCCGTG+TGG | 0.669899 | 5.2:+11828907 | None:intergenic |
CACTGTATCGGAGAATCACG+AGG | 0.670191 | 5.2:+11830282 | None:intergenic |
GATACAGTGCTTCATCAGGA+GGG | 0.688983 | 5.2:-11830268 | MS.gene010525:CDS |
TCACTTGAACCTATTCAGCA+GGG | 0.690245 | 5.2:-11830611 | MS.gene010525:CDS |
TAATACGTCGAGGAGAGGTG+TGG | 0.694801 | 5.2:-11830693 | MS.gene010525:CDS |
CTAACAATATAGTTACACGC+TGG | 0.696992 | 5.2:+11828832 | None:intergenic |
ATGGGATTGGTAATACGTCG+AGG | 0.700501 | 5.2:-11830703 | MS.gene010525:CDS |
TATGACAGCCAACCTCCACA+CGG | 0.700970 | 5.2:-11828922 | MS.gene010525:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTGTAATGCTAAATTTTA+GGG | - | chr5.2:11829278-11829297 | MS.gene010525:intron | 15.0% |
!!! | TTATTGTAATGCTAAATTTT+AGG | - | chr5.2:11829277-11829296 | MS.gene010525:intron | 15.0% |
!!! | TTTCATTTTTTTTTCTCAAA+GGG | - | chr5.2:11828853-11828872 | MS.gene010525:CDS | 15.0% |
!!! | TTTTCATTTTTTTTTCTCAA+AGG | - | chr5.2:11828852-11828871 | MS.gene010525:CDS | 15.0% |
!! | ACTTTCTCAAATTAATTACT+TGG | - | chr5.2:11829027-11829046 | MS.gene010525:intron | 20.0% |
!! | TACCAATTTCAAAATCATTA+AGG | + | chr5.2:11829776-11829795 | None:intergenic | 20.0% |
!! | TGGAAAAGATATATTTACTA+TGG | - | chr5.2:11830630-11830649 | MS.gene010525:CDS | 20.0% |
!! | TTATGAATTTAGATCTTGAA+CGG | - | chr5.2:11828922-11828941 | MS.gene010525:CDS | 20.0% |
!! | TTTATTGCACTAAATATGTA+GGG | - | chr5.2:11828949-11828968 | MS.gene010525:CDS | 20.0% |
!!! | TTTAAAATCACCCAAATAAA+GGG | + | chr5.2:11829469-11829488 | None:intergenic | 20.0% |
!!! | TTTAAGCAATTTTCAAGTAT+TGG | + | chr5.2:11829332-11829351 | None:intergenic | 20.0% |
!!! | TTTTATTGCACTAAATATGT+AGG | - | chr5.2:11828948-11828967 | MS.gene010525:CDS | 20.0% |
! | AAATGTTCATCAGTAATTTG+AGG | + | chr5.2:11830325-11830344 | None:intergenic | 25.0% |
! | AATCATTAAGGTGAATTGAA+CGG | + | chr5.2:11829764-11829783 | None:intergenic | 25.0% |
! | CAAGTAATTTCTTAACTATG+AGG | + | chr5.2:11829376-11829395 | None:intergenic | 25.0% |
! | TTAATTACACGTGCATTATT+TGG | - | chr5.2:11829190-11829209 | MS.gene010525:intron | 25.0% |
!! | TCATTTGTTTCCCTTTATTT+GGG | - | chr5.2:11829456-11829475 | MS.gene010525:intron | 25.0% |
!!! | AAATTTTAGGGCTAATTCTA+CGG | - | chr5.2:11829290-11829309 | MS.gene010525:intron | 25.0% |
!!! | AACTGATGATAAATTTTGAC+AGG | - | chr5.2:11830032-11830051 | MS.gene010525:intron | 25.0% |
!!! | AATGTTGATTCGACAAAAAA+GGG | - | chr5.2:11829399-11829418 | MS.gene010525:intron | 25.0% |
!!! | ACTTTTTGTTTATGAATAGC+CGG | - | chr5.2:11828700-11828719 | MS.gene010525:CDS | 25.0% |
!!! | CACCTTAATGATTTTGAAAT+TGG | - | chr5.2:11829771-11829790 | MS.gene010525:intron | 25.0% |
!!! | CTTTAAAATCACCCAAATAA+AGG | + | chr5.2:11829470-11829489 | None:intergenic | 25.0% |
!!! | TAGATGTTCTTTTTCATTGT+TGG | - | chr5.2:11829634-11829653 | MS.gene010525:intron | 25.0% |
!!! | TTAATTCTTCACTCCTTTTT+TGG | - | chr5.2:11828619-11828638 | MS.gene010525:CDS | 25.0% |
!!! | TTCTGTTTTTTCTTATACAG+CGG | - | chr5.2:11829814-11829833 | MS.gene010525:intron | 25.0% |
!!! | TTGAATCACTTTTGAAAACT+TGG | - | chr5.2:11828896-11828915 | MS.gene010525:CDS | 25.0% |
!!! | TTTTAACTTCTGACTTGAAT+GGG | - | chr5.2:11829682-11829701 | MS.gene010525:intron | 25.0% |
!!! | TTTTTAACTTCTGACTTGAA+TGG | - | chr5.2:11829681-11829700 | MS.gene010525:intron | 25.0% |
AACAACAATTACGCCAAAAA+AGG | + | chr5.2:11828635-11828654 | None:intergenic | 30.0% | |
AAGATACAGAACAACCAAAA+TGG | + | chr5.2:11828671-11828690 | None:intergenic | 30.0% | |
AGTTAAGAACTTTCAACTTG+TGG | - | chr5.2:11830537-11830556 | MS.gene010525:CDS | 30.0% | |
ATATCAAGTAGCAATTCAGA+TGG | + | chr5.2:11828438-11828457 | None:intergenic | 30.0% | |
ATATCTATTGTACTATGGAC+TGG | - | chr5.2:11828778-11828797 | MS.gene010525:CDS | 30.0% | |
ATGATGCAATTCATTCTTCT+CGG | + | chr5.2:11830241-11830260 | None:intergenic | 30.0% | |
CTCATTTGTTTCCCTTTATT+TGG | - | chr5.2:11829455-11829474 | MS.gene010525:intron | 30.0% | |
GAATTGCTTAAATCTCCAAT+TGG | + | chr5.2:11830385-11830404 | None:intergenic | 30.0% | |
GCTACTTGATATAATTCGAA+GGG | - | chr5.2:11828446-11828465 | MS.gene010525:CDS | 30.0% | |
GTAATTTGAGGAAAAGATGT+AGG | + | chr5.2:11830313-11830332 | None:intergenic | 30.0% | |
GTGTTGGAAATTTGAAAAGT+GGG | + | chr5.2:11829997-11830016 | None:intergenic | 30.0% | |
TAGCAGATAAAATAGTGTGT+TGG | + | chr5.2:11830013-11830032 | None:intergenic | 30.0% | |
TATTAGCTGCCAAAAAGATA+AGG | - | chr5.2:11829858-11829877 | MS.gene010525:intron | 30.0% | |
TCTGCATATCTATTGTACTA+TGG | - | chr5.2:11828773-11828792 | MS.gene010525:CDS | 30.0% | |
TGTGTTGGAAATTTGAAAAG+TGG | + | chr5.2:11829998-11830017 | None:intergenic | 30.0% | |
TTGGAGTCATAGTATGAAAT+GGG | - | chr5.2:11829578-11829597 | MS.gene010525:intron | 30.0% | |
! | AAACTAGAAGTGCATTTCTT+TGG | - | chr5.2:11829559-11829578 | MS.gene010525:intron | 30.0% |
! | TGCTACTTGATATAATTCGA+AGG | - | chr5.2:11828445-11828464 | MS.gene010525:CDS | 30.0% |
! | TTTGACAGGTCTAACTTTTT+GGG | - | chr5.2:11830046-11830065 | MS.gene010525:intron | 30.0% |
! | TTTGGAGTCATAGTATGAAA+TGG | - | chr5.2:11829577-11829596 | MS.gene010525:intron | 30.0% |
! | TTTTGACAGGTCTAACTTTT+TGG | - | chr5.2:11830045-11830064 | MS.gene010525:intron | 30.0% |
!! | CAATGTTGATTCGACAAAAA+AGG | - | chr5.2:11829398-11829417 | MS.gene010525:intron | 30.0% |
!! | CTTTTTGTTTATGAATAGCC+GGG | - | chr5.2:11828701-11828720 | MS.gene010525:CDS | 30.0% |
AGTGATGTTAGAGTGATATC+AGG | + | chr5.2:11828381-11828400 | None:intergenic | 35.0% | |
ATCACCTGCTTTAACGAAAT+AGG | + | chr5.2:11828600-11828619 | None:intergenic | 35.0% | |
ATCTTGCAGTTTGGAAAGAT+TGG | - | chr5.2:11830610-11830629 | MS.gene010525:CDS | 35.0% | |
CACAGACTTCATCATATCTT+TGG | - | chr5.2:11829892-11829911 | MS.gene010525:intron | 35.0% | |
CACATTGAAGCAAACTTACA+TGG | + | chr5.2:11828806-11828825 | None:intergenic | 35.0% | |
CCAAAAGGTAAAGATCCAAT+TGG | - | chr5.2:11830367-11830386 | MS.gene010525:intron | 35.0% | |
CTAACAATATAGTTACACGC+TGG | + | chr5.2:11830178-11830197 | None:intergenic | 35.0% | |
CTGAACAATCTCTTGTGTAA+CGG | + | chr5.2:11828547-11828566 | None:intergenic | 35.0% | |
GAGGAAAACAAAGCACAAAT+CGG | + | chr5.2:11829742-11829761 | None:intergenic | 35.0% | |
GTTTCCTATTTCGTTAAAGC+AGG | - | chr5.2:11828593-11828612 | MS.gene010525:CDS | 35.0% | |
TGATTCGACAAAAAAGGGAA+GGG | - | chr5.2:11829404-11829423 | MS.gene010525:intron | 35.0% | |
TTCTGTGTGTAAATCATGGA+GGG | - | chr5.2:11828521-11828540 | MS.gene010525:CDS | 35.0% | |
! | CATGTAAGTTTGCTTCAATG+TGG | - | chr5.2:11828804-11828823 | MS.gene010525:CDS | 35.0% |
! | CCAATTGGATCTTTACCTTT+TGG | + | chr5.2:11830370-11830389 | None:intergenic | 35.0% |
! | GAAACAAATGAGTTGAGTTG+AGG | + | chr5.2:11829447-11829466 | None:intergenic | 35.0% |
! | TGGAAAACTCAGGTAAGTTT+TGG | - | chr5.2:11829952-11829971 | MS.gene010525:intron | 35.0% |
! | TTGATTCGACAAAAAAGGGA+AGG | - | chr5.2:11829403-11829422 | MS.gene010525:intron | 35.0% |
! | TTTTCGCTGCTTATCCATTT+TGG | - | chr5.2:11828654-11828673 | MS.gene010525:CDS | 35.0% |
!! | TTTCAAGTATTGGTCTGATG+CGG | + | chr5.2:11829322-11829341 | None:intergenic | 35.0% |
!!! | TTTGGGTGATTTTAAAGTGC+CGG | - | chr5.2:11829473-11829492 | MS.gene010525:intron | 35.0% |
AAAAAGATAAGGAGGGCAAC+CGG | - | chr5.2:11829869-11829888 | MS.gene010525:intron | 40.0% | |
AACAAAGCACAAATCGGTTG+AGG | + | chr5.2:11829736-11829755 | None:intergenic | 40.0% | |
AACATTCAGCTCATAGGCAA+TGG | + | chr5.2:11830203-11830222 | None:intergenic | 40.0% | |
AGATATGATGAAGTCTGTGC+CGG | + | chr5.2:11829891-11829910 | None:intergenic | 40.0% | |
AGCTGCCAAAAAGATAAGGA+GGG | - | chr5.2:11829862-11829881 | MS.gene010525:intron | 40.0% | |
ATCACTTGAACCTATTCAGC+AGG | - | chr5.2:11828395-11828414 | MS.gene010525:CDS | 40.0% | |
ATGCGTATGTTGGAAAACTC+AGG | - | chr5.2:11829942-11829961 | MS.gene010525:intron | 40.0% | |
ATGCTGGTGCCTAAATTTCA+AGG | - | chr5.2:11830495-11830514 | MS.gene010525:CDS | 40.0% | |
CATTAAGGTGAATTGAACGG+AGG | + | chr5.2:11829761-11829780 | None:intergenic | 40.0% | |
CTGGAATACAACCAAATAGC+CGG | - | chr5.2:11830110-11830129 | MS.gene010525:intron | 40.0% | |
CTTCTGTGTGTAAATCATGG+AGG | - | chr5.2:11828520-11828539 | MS.gene010525:CDS | 40.0% | |
GACTTGAATGGGACAGAAAT+TGG | - | chr5.2:11829693-11829712 | MS.gene010525:intron | 40.0% | |
GAGAAGGTTATCTTGCAGTT+TGG | - | chr5.2:11830601-11830620 | MS.gene010525:CDS | 40.0% | |
GCAGGAGAAACATTATGAGA+TGG | + | chr5.2:11830574-11830593 | None:intergenic | 40.0% | |
GCTGTCATATATGGTGAACT+TGG | + | chr5.2:11830074-11830093 | None:intergenic | 40.0% | |
GTGCTTCTGTGTGTAAATCA+TGG | - | chr5.2:11828517-11828536 | MS.gene010525:CDS | 40.0% | |
GTTCGAACATGTGCATTACA+TGG | - | chr5.2:11829051-11829070 | MS.gene010525:intron | 40.0% | |
TAACACGGCCCTTGAAATTT+AGG | + | chr5.2:11830507-11830526 | None:intergenic | 40.0% | |
TAACTGAAGCCACTGTAACA+CGG | + | chr5.2:11830522-11830541 | None:intergenic | 40.0% | |
TAGAAGAGACTGAGACTTCT+TGG | - | chr5.2:11828469-11828488 | MS.gene010525:CDS | 40.0% | |
TAGCTGCCAAAAAGATAAGG+AGG | - | chr5.2:11829861-11829880 | MS.gene010525:intron | 40.0% | |
TCAAAAACAAGTCTCCCAGA+TGG | - | chr5.2:11830458-11830477 | MS.gene010525:CDS | 40.0% | |
TCACTTGAACCTATTCAGCA+GGG | - | chr5.2:11828396-11828415 | MS.gene010525:CDS | 40.0% | |
TGAGGAAAAGATGTAGGAGT+TGG | + | chr5.2:11830307-11830326 | None:intergenic | 40.0% | |
TGCTGGTGCCTAAATTTCAA+GGG | - | chr5.2:11830496-11830515 | MS.gene010525:CDS | 40.0% | |
TTGAGTACCAGAGACTCAAA+TGG | + | chr5.2:11830442-11830461 | None:intergenic | 40.0% | |
! | TTTTCCAACATACGCATTGC+TGG | + | chr5.2:11829939-11829958 | None:intergenic | 40.0% |
AACCTATTCAGCAGGGACAA+TGG | - | chr5.2:11828403-11828422 | MS.gene010525:CDS | 45.0% | |
AATGAAATCTCCTGCTGGAC+CGG | + | chr5.2:11830132-11830151 | None:intergenic | 45.0% | |
ACAGAAATTGGCTGAACCTG+TGG | - | chr5.2:11829705-11829724 | MS.gene010525:intron | 45.0% | |
ACCTATTCAGCAGGGACAAT+GGG | - | chr5.2:11828404-11828423 | MS.gene010525:CDS | 45.0% | |
ATAACCTTCTCTTGCTCTGC+AGG | + | chr5.2:11830592-11830611 | None:intergenic | 45.0% | |
CAGGAGATTTCATTCTAGGC+AGG | - | chr5.2:11830138-11830157 | MS.gene010525:intron | 45.0% | |
CCAGCAGGAGATTTCATTCT+AGG | - | chr5.2:11830134-11830153 | MS.gene010525:intron | 45.0% | |
CCTAGAATGAAATCTCCTGC+TGG | + | chr5.2:11830137-11830156 | None:intergenic | 45.0% | |
CGTCAATCTTCCACACTCTT+CGG | + | chr5.2:11828574-11828593 | None:intergenic | 45.0% | |
CTAAAATCCGACAGCCTCTA+GGG | + | chr5.2:11829503-11829522 | None:intergenic | 45.0% | |
GATACAGTGCTTCATCAGGA+GGG | - | chr5.2:11828739-11828758 | MS.gene010525:CDS | 45.0% | |
GTCAATCTTCCACACTCTTC+GGG | + | chr5.2:11828573-11828592 | None:intergenic | 45.0% | |
TAGTTACACGCTGGAACTCT+TGG | + | chr5.2:11830169-11830188 | None:intergenic | 45.0% | |
TATACCTGTCTCAGCTGTTC+AGG | - | chr5.2:11830267-11830286 | MS.gene010525:CDS | 45.0% | |
TCAAGCATATCGCAAAGGCT+TGG | + | chr5.2:11830681-11830700 | None:intergenic | 45.0% | |
TGAATGTTCTCCGCACTAGA+GGG | - | chr5.2:11830215-11830234 | MS.gene010525:intron | 45.0% | |
TTCGACAAAAAAGGGAAGGG+AGG | - | chr5.2:11829407-11829426 | MS.gene010525:intron | 45.0% | |
! | ATGGGATTGGTAATACGTCG+AGG | - | chr5.2:11828304-11828323 | MS.gene010525:CDS | 45.0% |
! | ATTGGTAATACGTCGAGGAG+AGG | - | chr5.2:11828309-11828328 | MS.gene010525:CDS | 45.0% |
! | GGTTGCCCTCCTTATCTTTT+TGG | + | chr5.2:11829870-11829889 | None:intergenic | 45.0% |
! | TCTAAAATCCGACAGCCTCT+AGG | + | chr5.2:11829504-11829523 | None:intergenic | 45.0% |
! | TGGAGGTTGGCTGTCATATA+TGG | + | chr5.2:11830083-11830102 | None:intergenic | 45.0% |
!! | CTCCTGATGAAGCACTGTAT+CGG | + | chr5.2:11828740-11828759 | None:intergenic | 45.0% |
!!! | GGATCTTTACCTTTTGGCTC+TGG | + | chr5.2:11830364-11830383 | None:intergenic | 45.0% |
ACAAAAAAGGGAAGGGAGGC+GGG | - | chr5.2:11829411-11829430 | MS.gene010525:intron | 50.0% | |
ATCGGTTGAGGTGTATCCAC+AGG | + | chr5.2:11829724-11829743 | None:intergenic | 50.0% | |
CAAGTAGGCATTCACAGCGT+CGG | - | chr5.2:11828337-11828356 | MS.gene010525:CDS | 50.0% | |
CACTGTATCGGAGAATCACG+AGG | + | chr5.2:11828728-11828747 | None:intergenic | 50.0% | |
CGATACAGTGCTTCATCAGG+AGG | - | chr5.2:11828738-11828757 | MS.gene010525:CDS | 50.0% | |
CGTTCCAGCAATGCGTATGT+TGG | - | chr5.2:11829932-11829951 | MS.gene010525:intron | 50.0% | |
CTCCGATACAGTGCTTCATC+AGG | - | chr5.2:11828735-11828754 | MS.gene010525:CDS | 50.0% | |
CTGAATGTTCTCCGCACTAG+AGG | - | chr5.2:11830214-11830233 | MS.gene010525:intron | 50.0% | |
CTGTCTCAGCTGTTCAGGAA+GGG | - | chr5.2:11830272-11830291 | MS.gene010525:CDS | 50.0% | |
GACAAAAAAGGGAAGGGAGG+CGG | - | chr5.2:11829410-11829429 | MS.gene010525:intron | 50.0% | |
GCATATCGCAAAGGCTTGGA+AGG | + | chr5.2:11830677-11830696 | None:intergenic | 50.0% | |
GCGGAGAACATTCAGCTCAT+AGG | + | chr5.2:11830209-11830228 | None:intergenic | 50.0% | |
GCTGCTCAAGCATATCGCAA+AGG | + | chr5.2:11830686-11830705 | None:intergenic | 50.0% | |
GGAAGGCAGAGAGTGGATAA+CGG | + | chr5.2:11830660-11830679 | None:intergenic | 50.0% | |
TAATACGTCGAGGAGAGGTG+TGG | - | chr5.2:11828314-11828333 | MS.gene010525:CDS | 50.0% | |
TATGACAGCCAACCTCCACA+CGG | - | chr5.2:11830085-11830104 | MS.gene010525:intron | 50.0% | |
TGCAGCTGTTCATGCCATCT+GGG | + | chr5.2:11830475-11830494 | None:intergenic | 50.0% | |
TGTCTCAGCTGTTCAGGAAG+GGG | - | chr5.2:11830273-11830292 | MS.gene010525:CDS | 50.0% | |
TTCTCCTGCAGAGCAAGAGA+AGG | - | chr5.2:11830585-11830604 | MS.gene010525:CDS | 50.0% | |
TTGCAGCTGTTCATGCCATC+TGG | + | chr5.2:11830476-11830495 | None:intergenic | 50.0% | |
TTTCAAGGGCCGTGTTACAG+TGG | - | chr5.2:11830510-11830529 | MS.gene010525:CDS | 50.0% | |
AACCAAATAGCCGGTCCAGC+AGG | - | chr5.2:11830119-11830138 | MS.gene010525:intron | 55.0% | |
AAGGCTTGGAAGGCAGAGAG+TGG | + | chr5.2:11830667-11830686 | None:intergenic | 55.0% | |
ATCGGAGAATCACGAGGACC+CGG | + | chr5.2:11828722-11828741 | None:intergenic | 55.0% | |
CCAAGGGCCATTTGAGTCTC+TGG | - | chr5.2:11830432-11830451 | MS.gene010525:CDS | 55.0% | |
CCAGAGACTCAAATGGCCCT+TGG | + | chr5.2:11830435-11830454 | None:intergenic | 55.0% | |
CCTGTCTCAGCTGTTCAGGA+AGG | - | chr5.2:11830271-11830290 | MS.gene010525:CDS | 55.0% | |
CCTTCCTGAACAGCTGAGAC+AGG | + | chr5.2:11830274-11830293 | None:intergenic | 55.0% | |
GAAACGACAACAGCACGTGC+AGG | + | chr5.2:11828495-11828514 | None:intergenic | 55.0% | |
GCCCATTGTCCCTGCTGAAT+AGG | + | chr5.2:11828408-11828427 | None:intergenic | 55.0% | |
GGCATGAACAGCTGCAATGC+TGG | - | chr5.2:11830479-11830498 | MS.gene010525:CDS | 55.0% | |
GGTTGTATTCCAGCTCCGTG+TGG | + | chr5.2:11830103-11830122 | None:intergenic | 55.0% | |
GTCTCAGCTGTTCAGGAAGG+GGG | - | chr5.2:11830274-11830293 | MS.gene010525:CDS | 55.0% | |
GTTCAGACTCCCGAAGAGTG+TGG | - | chr5.2:11828561-11828580 | MS.gene010525:CDS | 55.0% | |
TGTATTCCAGCTCCGTGTGG+AGG | + | chr5.2:11830100-11830119 | None:intergenic | 55.0% | |
TTCAACCCTCGCAGAGTTGC+CGG | - | chr5.2:11830402-11830421 | MS.gene010525:intron | 55.0% | |
TTCTTCTCGGCCCTCTAGTG+CGG | + | chr5.2:11830228-11830247 | None:intergenic | 55.0% | |
!! | AAAGTGCCGGTTCACCCTAG+AGG | - | chr5.2:11829486-11829505 | MS.gene010525:intron | 55.0% |
!! | AATGGCCCTTGGCTCTGAAC+CGG | + | chr5.2:11830424-11830443 | None:intergenic | 55.0% |
!! | AGTTGCCGGTTCAGAGCCAA+GGG | - | chr5.2:11830416-11830435 | MS.gene010525:CDS | 55.0% |
CGGTTCACCCTAGAGGCTGT+CGG | - | chr5.2:11829493-11829512 | MS.gene010525:intron | 60.0% | |
CTCCTGCTGGACCGGCTATT+TGG | + | chr5.2:11830124-11830143 | None:intergenic | 60.0% | |
CTGAACCGGCAACTCTGCGA+GGG | + | chr5.2:11830410-11830429 | None:intergenic | 60.0% | |
GCGTCAGCACCAGAGCCAAA+AGG | - | chr5.2:11830352-11830371 | MS.gene010525:intron | 60.0% | |
TCTGAACCGGCAACTCTGCG+AGG | + | chr5.2:11830411-11830430 | None:intergenic | 60.0% | |
TTCCAGCTCCGTGTGGAGGT+TGG | + | chr5.2:11830096-11830115 | None:intergenic | 60.0% | |
! | CGAGGAGAGGTGTGGCAAGT+AGG | - | chr5.2:11828322-11828341 | MS.gene010525:CDS | 60.0% |
!! | CGACAGCCTCTAGGGTGAAC+CGG | + | chr5.2:11829495-11829514 | None:intergenic | 60.0% |
!! | GAGTTGCCGGTTCAGAGCCA+AGG | - | chr5.2:11830415-11830434 | MS.gene010525:CDS | 60.0% |
AGCCAACCTCCACACGGAGC+TGG | - | chr5.2:11830091-11830110 | MS.gene010525:intron | 65.0% | |
AGGGAAGGGAGGCGGGAGTA+TGG | - | chr5.2:11829418-11829437 | MS.gene010525:intron | 65.0% | |
! | GGGAAGGGAGGCGGGAGTAT+GGG | - | chr5.2:11829419-11829438 | MS.gene010525:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 11828297 | 11830732 | 11828297 | ID=MS.gene010525 |
chr5.2 | mRNA | 11828297 | 11830732 | 11828297 | ID=MS.gene010525.t1;Parent=MS.gene010525 |
chr5.2 | exon | 11830415 | 11830732 | 11830415 | ID=MS.gene010525.t1.exon1;Parent=MS.gene010525.t1 |
chr5.2 | CDS | 11830415 | 11830732 | 11830415 | ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1 |
chr5.2 | exon | 11830223 | 11830310 | 11830223 | ID=MS.gene010525.t1.exon2;Parent=MS.gene010525.t1 |
chr5.2 | CDS | 11830223 | 11830310 | 11830223 | ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1 |
chr5.2 | exon | 11829066 | 11829195 | 11829066 | ID=MS.gene010525.t1.exon3;Parent=MS.gene010525.t1 |
chr5.2 | CDS | 11829066 | 11829195 | 11829066 | ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1 |
chr5.2 | exon | 11828297 | 11828975 | 11828297 | ID=MS.gene010525.t1.exon4;Parent=MS.gene010525.t1 |
chr5.2 | CDS | 11828297 | 11828975 | 11828297 | ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1 |
Gene Sequence |
Protein sequence |