AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010525


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010525.t1 MTR_5g020580 97.525 404 10 0 1 404 13 416 0.0 819
MS.gene010525.t1 MTR_8g077195 74.505 404 99 2 1 404 13 412 0.0 631
MS.gene010525.t1 MTR_1g022370 62.796 422 127 8 1 404 13 422 0.0 510
MS.gene010525.t1 MTR_8g077620 57.855 401 134 9 1 395 13 384 3.07e-156 446
MS.gene010525.t1 MTR_8g077675 58.354 401 145 9 1 397 13 395 2.70e-155 444
MS.gene010525.t1 MTR_2g007930 54.976 422 168 11 1 404 10 427 3.09e-150 432
MS.gene010525.t1 MTR_2g020280 57.182 369 151 3 36 404 32 393 3.07e-149 428
MS.gene010525.t1 MTR_1g098790 53.037 428 171 11 1 404 10 431 1.08e-145 421
MS.gene010525.t1 MTR_1g088960 53.846 403 176 6 2 404 10 402 3.34e-144 416
MS.gene010525.t1 MTR_2g076200 50.829 362 146 2 43 404 42 371 3.27e-127 372
MS.gene010525.t1 MTR_8g077650 51.786 392 113 12 25 401 3 333 5.32e-119 349
MS.gene010525.t1 MTR_2g020280 58.140 301 119 3 104 404 1 294 3.51e-118 345
MS.gene010525.t1 MTR_2g076210 44.772 373 167 6 36 404 30 367 4.32e-101 305
MS.gene010525.t1 MTR_8g077640 59.242 211 60 5 4 195 57 260 6.34e-65 212
MS.gene010525.t1 MTR_8g077640 55.556 117 51 1 279 394 267 383 1.75e-33 129
MS.gene010525.t1 MTR_1g023800 52.667 150 66 2 1 149 13 158 1.25e-49 165
MS.gene010525.t1 MTR_0210s0010 71.134 97 22 1 86 182 9 99 2.50e-37 131
MS.gene010525.t1 MTR_0479s0040 74.286 70 12 1 102 171 12 75 2.58e-25 98.6
MS.gene010525.t1 MTR_2g105390 36.697 109 54 4 301 403 260 359 1.93e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010525.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene010525.t1 AT2G18280 63.547 406 121 7 1 404 13 393 4.08e-177 499
MS.gene010525.t1 AT1G47270 58.333 396 131 9 20 404 16 388 5.55e-155 443
MS.gene010525.t1 AT1G47270 58.333 396 131 9 20 404 40 412 9.17e-155 443
MS.gene010525.t1 AT1G47270 58.333 396 131 9 20 404 41 413 9.39e-155 443
MS.gene010525.t1 AT1G25280 53.899 436 169 8 1 404 10 445 1.69e-151 436
MS.gene010525.t1 AT2G47900 54.433 406 175 4 1 404 10 407 2.27e-150 432
MS.gene010525.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene010525.t1 AT2G47900 54.568 405 175 4 1 404 10 406 3.79e-150 431
MS.gene010525.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010525.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010525.t1 AT1G76900 50.667 450 172 8 1 404 10 455 3.97e-142 412
MS.gene010525.t1 AT1G43640 50.000 430 179 11 1 404 10 429 1.46e-140 408
MS.gene010525.t1 AT5G18680 53.887 373 147 7 39 404 35 389 2.52e-130 380
MS.gene010525.t1 AT1G43640 52.151 372 147 9 55 404 1 363 1.37e-128 375
MS.gene010525.t1 AT3G06380 51.671 389 168 7 19 404 9 380 2.76e-128 375
MS.gene010525.t1 AT1G53320 51.934 362 148 3 43 404 44 379 1.78e-124 365
MS.gene010525.t1 AT5G18680 54.369 309 117 6 102 404 7 297 1.22e-105 314
MS.gene010525.t1 AT3G06380 54.153 301 119 6 106 404 5 288 1.71e-101 303
MS.gene010525.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene010525.t1 AT1G25280 56.180 267 93 6 162 404 1 267 8.15e-95 285
MS.gene010525.t1 AT1G61940 50.575 87 43 0 46 132 1 87 3.82e-26 106
MS.gene010525.t1 AT1G61940 54.098 61 28 0 46 106 1 61 5.83e-16 77.4

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 5.2:+11828886 None:intergenic
CCAATTGGATCTTTACCTTT+TGG 0.222216 5.2:+11828640 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 5.2:+11828503 None:intergenic
CCAGCAGGAGATTTCATTCT+AGG 0.267212 5.2:-11828873 MS.gene010525:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 5.2:-11828377 MS.gene010525:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 5.2:-11829115 MS.gene010525:CDS
ATCACCTGCTTTAACGAAAT+AGG 0.313540 5.2:+11830410 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 5.2:+11828534 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 5.2:-11828397 MS.gene010525:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 5.2:+11830436 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 5.2:-11828605 MS.gene010525:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 5.2:+11830437 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 5.2:-11828406 MS.gene010525:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 5.2:-11828740 MS.gene010525:CDS
TAGAAGAGACTGAGACTTCT+TGG 0.372030 5.2:-11830538 MS.gene010525:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 5.2:-11830234 MS.gene010525:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 5.2:+11828769 None:intergenic
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 5.2:-11828575 MS.gene010525:CDS
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 5.2:+11828418 None:intergenic
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 5.2:-11828512 MS.gene010525:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 5.2:+11828703 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 5.2:-11830603 MS.gene010525:CDS
AGTGATGTTAGAGTGATATC+AGG 0.447610 5.2:+11830629 None:intergenic
GAATTGCTTAAATCTCCAAT+TGG 0.451744 5.2:+11828625 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 5.2:+11828927 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 5.2:-11830272 MS.gene010525:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 5.2:+11830602 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 5.2:-11828640 MS.gene010525:CDS
ATCACTTGAACCTATTCAGC+AGG 0.471218 5.2:-11830612 MS.gene010525:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 5.2:+11828841 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 5.2:-11828916 MS.gene010525:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 5.2:-11828528 MS.gene010525:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 5.2:+11828878 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 5.2:+11828801 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 5.2:-11830721 None:intergenic
CTGAATGTTCTCCGCACTAG+AGG 0.484848 5.2:-11828793 MS.gene010525:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 5.2:-11829075 MS.gene010525:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 5.2:-11828888 MS.gene010525:CDS
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 5.2:+11828586 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 5.2:+11828697 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 5.2:-11830722 None:intergenic
TGCAGCTGTTCATGCCATCT+GGG 0.506117 5.2:+11828535 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 5.2:-11830414 MS.gene010525:intron
AAATGTTCATCAGTAATTTG+AGG 0.509198 5.2:+11828685 None:intergenic
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 5.2:+11828736 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 5.2:-11828592 MS.gene010525:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 5.2:-11828869 MS.gene010525:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 5.2:+11828289 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 5.2:+11828568 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 5.2:-11828470 MS.gene010525:CDS
GAAACGACAACAGCACGTGC+AGG 0.536741 5.2:+11830515 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 5.2:+11828873 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 5.2:-11828736 MS.gene010525:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 5.2:-11828735 MS.gene010525:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 5.2:-11830685 MS.gene010525:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 5.2:+11828333 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 5.2:+11828936 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 5.2:-11830490 MS.gene010525:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 5.2:+11828575 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 5.2:+11828914 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 5.2:-11830604 MS.gene010525:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 5.2:+11828599 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 5.2:-11830716 None:intergenic
TGCTACTTGATATAATTCGA+AGG 0.558581 5.2:-11830562 MS.gene010525:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 5.2:-11828734 MS.gene010525:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 5.2:+11830288 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 5.2:+11830270 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 5.2:+11828782 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 5.2:-11828733 MS.gene010525:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 5.2:+11828600 None:intergenic
ATATCTATTGTACTATGGAC+TGG 0.572719 5.2:-11830229 MS.gene010525:CDS
GCTACTTGATATAATTCGAA+GGG 0.575810 5.2:-11830561 MS.gene010525:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 5.2:-11828655 MS.gene010525:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 5.2:+11828329 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 5.2:+11828807 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 5.2:-11828897 MS.gene010525:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 5.2:-11830269 MS.gene010525:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 5.2:+11830463 None:intergenic
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 5.2:-11828422 MS.gene010525:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 5.2:-11829065 MS.gene010525:intron
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 5.2:-11828591 MS.gene010525:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 5.2:+11828436 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 5.2:-11830670 MS.gene010525:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 5.2:+11828350 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 5.2:+11828324 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 5.2:-11828497 MS.gene010525:CDS
TGAATGTTCTCCGCACTAGA+GGG 0.618617 5.2:-11828792 MS.gene010525:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 5.2:+11828343 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 5.2:-11830486 MS.gene010525:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 5.2:+11829119 None:intergenic
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 5.2:-11830446 MS.gene010525:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 5.2:-11828511 MS.gene010525:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 5.2:+11828488 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 5.2:+11828910 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 5.2:-11830487 MS.gene010525:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 5.2:-11830698 MS.gene010525:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 5.2:+11830572 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 5.2:+11828907 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 5.2:+11830282 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 5.2:-11830268 MS.gene010525:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 5.2:-11830611 MS.gene010525:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 5.2:-11830693 MS.gene010525:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 5.2:+11828832 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 5.2:-11830703 MS.gene010525:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 5.2:-11828922 MS.gene010525:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTAATGCTAAATTTTA+GGG - chr5.2:11829278-11829297 MS.gene010525:intron 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG - chr5.2:11829277-11829296 MS.gene010525:intron 15.0%
!!! TTTCATTTTTTTTTCTCAAA+GGG - chr5.2:11828853-11828872 MS.gene010525:CDS 15.0%
!!! TTTTCATTTTTTTTTCTCAA+AGG - chr5.2:11828852-11828871 MS.gene010525:CDS 15.0%
!! ACTTTCTCAAATTAATTACT+TGG - chr5.2:11829027-11829046 MS.gene010525:intron 20.0%
!! TACCAATTTCAAAATCATTA+AGG + chr5.2:11829776-11829795 None:intergenic 20.0%
!! TGGAAAAGATATATTTACTA+TGG - chr5.2:11830630-11830649 MS.gene010525:CDS 20.0%
!! TTATGAATTTAGATCTTGAA+CGG - chr5.2:11828922-11828941 MS.gene010525:CDS 20.0%
!! TTTATTGCACTAAATATGTA+GGG - chr5.2:11828949-11828968 MS.gene010525:CDS 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG + chr5.2:11829469-11829488 None:intergenic 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG + chr5.2:11829332-11829351 None:intergenic 20.0%
!!! TTTTATTGCACTAAATATGT+AGG - chr5.2:11828948-11828967 MS.gene010525:CDS 20.0%
! AAATGTTCATCAGTAATTTG+AGG + chr5.2:11830325-11830344 None:intergenic 25.0%
! AATCATTAAGGTGAATTGAA+CGG + chr5.2:11829764-11829783 None:intergenic 25.0%
! CAAGTAATTTCTTAACTATG+AGG + chr5.2:11829376-11829395 None:intergenic 25.0%
! TTAATTACACGTGCATTATT+TGG - chr5.2:11829190-11829209 MS.gene010525:intron 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG - chr5.2:11829456-11829475 MS.gene010525:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG - chr5.2:11829290-11829309 MS.gene010525:intron 25.0%
!!! AACTGATGATAAATTTTGAC+AGG - chr5.2:11830032-11830051 MS.gene010525:intron 25.0%
!!! AATGTTGATTCGACAAAAAA+GGG - chr5.2:11829399-11829418 MS.gene010525:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG - chr5.2:11828700-11828719 MS.gene010525:CDS 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG - chr5.2:11829771-11829790 MS.gene010525:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG + chr5.2:11829470-11829489 None:intergenic 25.0%
!!! TAGATGTTCTTTTTCATTGT+TGG - chr5.2:11829634-11829653 MS.gene010525:intron 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG - chr5.2:11828619-11828638 MS.gene010525:CDS 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG - chr5.2:11829814-11829833 MS.gene010525:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG - chr5.2:11828896-11828915 MS.gene010525:CDS 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG - chr5.2:11829682-11829701 MS.gene010525:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG - chr5.2:11829681-11829700 MS.gene010525:intron 25.0%
AACAACAATTACGCCAAAAA+AGG + chr5.2:11828635-11828654 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG + chr5.2:11828671-11828690 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG - chr5.2:11830537-11830556 MS.gene010525:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG + chr5.2:11828438-11828457 None:intergenic 30.0%
ATATCTATTGTACTATGGAC+TGG - chr5.2:11828778-11828797 MS.gene010525:CDS 30.0%
ATGATGCAATTCATTCTTCT+CGG + chr5.2:11830241-11830260 None:intergenic 30.0%
CTCATTTGTTTCCCTTTATT+TGG - chr5.2:11829455-11829474 MS.gene010525:intron 30.0%
GAATTGCTTAAATCTCCAAT+TGG + chr5.2:11830385-11830404 None:intergenic 30.0%
GCTACTTGATATAATTCGAA+GGG - chr5.2:11828446-11828465 MS.gene010525:CDS 30.0%
GTAATTTGAGGAAAAGATGT+AGG + chr5.2:11830313-11830332 None:intergenic 30.0%
GTGTTGGAAATTTGAAAAGT+GGG + chr5.2:11829997-11830016 None:intergenic 30.0%
TAGCAGATAAAATAGTGTGT+TGG + chr5.2:11830013-11830032 None:intergenic 30.0%
TATTAGCTGCCAAAAAGATA+AGG - chr5.2:11829858-11829877 MS.gene010525:intron 30.0%
TCTGCATATCTATTGTACTA+TGG - chr5.2:11828773-11828792 MS.gene010525:CDS 30.0%
TGTGTTGGAAATTTGAAAAG+TGG + chr5.2:11829998-11830017 None:intergenic 30.0%
TTGGAGTCATAGTATGAAAT+GGG - chr5.2:11829578-11829597 MS.gene010525:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG - chr5.2:11829559-11829578 MS.gene010525:intron 30.0%
! TGCTACTTGATATAATTCGA+AGG - chr5.2:11828445-11828464 MS.gene010525:CDS 30.0%
! TTTGACAGGTCTAACTTTTT+GGG - chr5.2:11830046-11830065 MS.gene010525:intron 30.0%
! TTTGGAGTCATAGTATGAAA+TGG - chr5.2:11829577-11829596 MS.gene010525:intron 30.0%
! TTTTGACAGGTCTAACTTTT+TGG - chr5.2:11830045-11830064 MS.gene010525:intron 30.0%
!! CAATGTTGATTCGACAAAAA+AGG - chr5.2:11829398-11829417 MS.gene010525:intron 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG - chr5.2:11828701-11828720 MS.gene010525:CDS 30.0%
AGTGATGTTAGAGTGATATC+AGG + chr5.2:11828381-11828400 None:intergenic 35.0%
ATCACCTGCTTTAACGAAAT+AGG + chr5.2:11828600-11828619 None:intergenic 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr5.2:11830610-11830629 MS.gene010525:CDS 35.0%
CACAGACTTCATCATATCTT+TGG - chr5.2:11829892-11829911 MS.gene010525:intron 35.0%
CACATTGAAGCAAACTTACA+TGG + chr5.2:11828806-11828825 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG - chr5.2:11830367-11830386 MS.gene010525:intron 35.0%
CTAACAATATAGTTACACGC+TGG + chr5.2:11830178-11830197 None:intergenic 35.0%
CTGAACAATCTCTTGTGTAA+CGG + chr5.2:11828547-11828566 None:intergenic 35.0%
GAGGAAAACAAAGCACAAAT+CGG + chr5.2:11829742-11829761 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG - chr5.2:11828593-11828612 MS.gene010525:CDS 35.0%
TGATTCGACAAAAAAGGGAA+GGG - chr5.2:11829404-11829423 MS.gene010525:intron 35.0%
TTCTGTGTGTAAATCATGGA+GGG - chr5.2:11828521-11828540 MS.gene010525:CDS 35.0%
! CATGTAAGTTTGCTTCAATG+TGG - chr5.2:11828804-11828823 MS.gene010525:CDS 35.0%
! CCAATTGGATCTTTACCTTT+TGG + chr5.2:11830370-11830389 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG + chr5.2:11829447-11829466 None:intergenic 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG - chr5.2:11829952-11829971 MS.gene010525:intron 35.0%
! TTGATTCGACAAAAAAGGGA+AGG - chr5.2:11829403-11829422 MS.gene010525:intron 35.0%
! TTTTCGCTGCTTATCCATTT+TGG - chr5.2:11828654-11828673 MS.gene010525:CDS 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG + chr5.2:11829322-11829341 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG - chr5.2:11829473-11829492 MS.gene010525:intron 35.0%
AAAAAGATAAGGAGGGCAAC+CGG - chr5.2:11829869-11829888 MS.gene010525:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG + chr5.2:11829736-11829755 None:intergenic 40.0%
AACATTCAGCTCATAGGCAA+TGG + chr5.2:11830203-11830222 None:intergenic 40.0%
AGATATGATGAAGTCTGTGC+CGG + chr5.2:11829891-11829910 None:intergenic 40.0%
AGCTGCCAAAAAGATAAGGA+GGG - chr5.2:11829862-11829881 MS.gene010525:intron 40.0%
ATCACTTGAACCTATTCAGC+AGG - chr5.2:11828395-11828414 MS.gene010525:CDS 40.0%
ATGCGTATGTTGGAAAACTC+AGG - chr5.2:11829942-11829961 MS.gene010525:intron 40.0%
ATGCTGGTGCCTAAATTTCA+AGG - chr5.2:11830495-11830514 MS.gene010525:CDS 40.0%
CATTAAGGTGAATTGAACGG+AGG + chr5.2:11829761-11829780 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG - chr5.2:11830110-11830129 MS.gene010525:intron 40.0%
CTTCTGTGTGTAAATCATGG+AGG - chr5.2:11828520-11828539 MS.gene010525:CDS 40.0%
GACTTGAATGGGACAGAAAT+TGG - chr5.2:11829693-11829712 MS.gene010525:intron 40.0%
GAGAAGGTTATCTTGCAGTT+TGG - chr5.2:11830601-11830620 MS.gene010525:CDS 40.0%
GCAGGAGAAACATTATGAGA+TGG + chr5.2:11830574-11830593 None:intergenic 40.0%
GCTGTCATATATGGTGAACT+TGG + chr5.2:11830074-11830093 None:intergenic 40.0%
GTGCTTCTGTGTGTAAATCA+TGG - chr5.2:11828517-11828536 MS.gene010525:CDS 40.0%
GTTCGAACATGTGCATTACA+TGG - chr5.2:11829051-11829070 MS.gene010525:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG + chr5.2:11830507-11830526 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG + chr5.2:11830522-11830541 None:intergenic 40.0%
TAGAAGAGACTGAGACTTCT+TGG - chr5.2:11828469-11828488 MS.gene010525:CDS 40.0%
TAGCTGCCAAAAAGATAAGG+AGG - chr5.2:11829861-11829880 MS.gene010525:intron 40.0%
TCAAAAACAAGTCTCCCAGA+TGG - chr5.2:11830458-11830477 MS.gene010525:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG - chr5.2:11828396-11828415 MS.gene010525:CDS 40.0%
TGAGGAAAAGATGTAGGAGT+TGG + chr5.2:11830307-11830326 None:intergenic 40.0%
TGCTGGTGCCTAAATTTCAA+GGG - chr5.2:11830496-11830515 MS.gene010525:CDS 40.0%
TTGAGTACCAGAGACTCAAA+TGG + chr5.2:11830442-11830461 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG + chr5.2:11829939-11829958 None:intergenic 40.0%
AACCTATTCAGCAGGGACAA+TGG - chr5.2:11828403-11828422 MS.gene010525:CDS 45.0%
AATGAAATCTCCTGCTGGAC+CGG + chr5.2:11830132-11830151 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG - chr5.2:11829705-11829724 MS.gene010525:intron 45.0%
ACCTATTCAGCAGGGACAAT+GGG - chr5.2:11828404-11828423 MS.gene010525:CDS 45.0%
ATAACCTTCTCTTGCTCTGC+AGG + chr5.2:11830592-11830611 None:intergenic 45.0%
CAGGAGATTTCATTCTAGGC+AGG - chr5.2:11830138-11830157 MS.gene010525:intron 45.0%
CCAGCAGGAGATTTCATTCT+AGG - chr5.2:11830134-11830153 MS.gene010525:intron 45.0%
CCTAGAATGAAATCTCCTGC+TGG + chr5.2:11830137-11830156 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG + chr5.2:11828574-11828593 None:intergenic 45.0%
CTAAAATCCGACAGCCTCTA+GGG + chr5.2:11829503-11829522 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG - chr5.2:11828739-11828758 MS.gene010525:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG + chr5.2:11828573-11828592 None:intergenic 45.0%
TAGTTACACGCTGGAACTCT+TGG + chr5.2:11830169-11830188 None:intergenic 45.0%
TATACCTGTCTCAGCTGTTC+AGG - chr5.2:11830267-11830286 MS.gene010525:CDS 45.0%
TCAAGCATATCGCAAAGGCT+TGG + chr5.2:11830681-11830700 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG - chr5.2:11830215-11830234 MS.gene010525:intron 45.0%
TTCGACAAAAAAGGGAAGGG+AGG - chr5.2:11829407-11829426 MS.gene010525:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG - chr5.2:11828304-11828323 MS.gene010525:CDS 45.0%
! ATTGGTAATACGTCGAGGAG+AGG - chr5.2:11828309-11828328 MS.gene010525:CDS 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG + chr5.2:11829870-11829889 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG + chr5.2:11829504-11829523 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG + chr5.2:11830083-11830102 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG + chr5.2:11828740-11828759 None:intergenic 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG + chr5.2:11830364-11830383 None:intergenic 45.0%
ACAAAAAAGGGAAGGGAGGC+GGG - chr5.2:11829411-11829430 MS.gene010525:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG + chr5.2:11829724-11829743 None:intergenic 50.0%
CAAGTAGGCATTCACAGCGT+CGG - chr5.2:11828337-11828356 MS.gene010525:CDS 50.0%
CACTGTATCGGAGAATCACG+AGG + chr5.2:11828728-11828747 None:intergenic 50.0%
CGATACAGTGCTTCATCAGG+AGG - chr5.2:11828738-11828757 MS.gene010525:CDS 50.0%
CGTTCCAGCAATGCGTATGT+TGG - chr5.2:11829932-11829951 MS.gene010525:intron 50.0%
CTCCGATACAGTGCTTCATC+AGG - chr5.2:11828735-11828754 MS.gene010525:CDS 50.0%
CTGAATGTTCTCCGCACTAG+AGG - chr5.2:11830214-11830233 MS.gene010525:intron 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG - chr5.2:11830272-11830291 MS.gene010525:CDS 50.0%
GACAAAAAAGGGAAGGGAGG+CGG - chr5.2:11829410-11829429 MS.gene010525:intron 50.0%
GCATATCGCAAAGGCTTGGA+AGG + chr5.2:11830677-11830696 None:intergenic 50.0%
GCGGAGAACATTCAGCTCAT+AGG + chr5.2:11830209-11830228 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG + chr5.2:11830686-11830705 None:intergenic 50.0%
GGAAGGCAGAGAGTGGATAA+CGG + chr5.2:11830660-11830679 None:intergenic 50.0%
TAATACGTCGAGGAGAGGTG+TGG - chr5.2:11828314-11828333 MS.gene010525:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG - chr5.2:11830085-11830104 MS.gene010525:intron 50.0%
TGCAGCTGTTCATGCCATCT+GGG + chr5.2:11830475-11830494 None:intergenic 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG - chr5.2:11830273-11830292 MS.gene010525:CDS 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG - chr5.2:11830585-11830604 MS.gene010525:CDS 50.0%
TTGCAGCTGTTCATGCCATC+TGG + chr5.2:11830476-11830495 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG - chr5.2:11830510-11830529 MS.gene010525:CDS 50.0%
AACCAAATAGCCGGTCCAGC+AGG - chr5.2:11830119-11830138 MS.gene010525:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr5.2:11830667-11830686 None:intergenic 55.0%
ATCGGAGAATCACGAGGACC+CGG + chr5.2:11828722-11828741 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG - chr5.2:11830432-11830451 MS.gene010525:CDS 55.0%
CCAGAGACTCAAATGGCCCT+TGG + chr5.2:11830435-11830454 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG - chr5.2:11830271-11830290 MS.gene010525:CDS 55.0%
CCTTCCTGAACAGCTGAGAC+AGG + chr5.2:11830274-11830293 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG + chr5.2:11828495-11828514 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG + chr5.2:11828408-11828427 None:intergenic 55.0%
GGCATGAACAGCTGCAATGC+TGG - chr5.2:11830479-11830498 MS.gene010525:CDS 55.0%
GGTTGTATTCCAGCTCCGTG+TGG + chr5.2:11830103-11830122 None:intergenic 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG - chr5.2:11830274-11830293 MS.gene010525:CDS 55.0%
GTTCAGACTCCCGAAGAGTG+TGG - chr5.2:11828561-11828580 MS.gene010525:CDS 55.0%
TGTATTCCAGCTCCGTGTGG+AGG + chr5.2:11830100-11830119 None:intergenic 55.0%
TTCAACCCTCGCAGAGTTGC+CGG - chr5.2:11830402-11830421 MS.gene010525:intron 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG + chr5.2:11830228-11830247 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG - chr5.2:11829486-11829505 MS.gene010525:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG + chr5.2:11830424-11830443 None:intergenic 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG - chr5.2:11830416-11830435 MS.gene010525:CDS 55.0%
CGGTTCACCCTAGAGGCTGT+CGG - chr5.2:11829493-11829512 MS.gene010525:intron 60.0%
CTCCTGCTGGACCGGCTATT+TGG + chr5.2:11830124-11830143 None:intergenic 60.0%
CTGAACCGGCAACTCTGCGA+GGG + chr5.2:11830410-11830429 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG - chr5.2:11830352-11830371 MS.gene010525:intron 60.0%
TCTGAACCGGCAACTCTGCG+AGG + chr5.2:11830411-11830430 None:intergenic 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG + chr5.2:11830096-11830115 None:intergenic 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG - chr5.2:11828322-11828341 MS.gene010525:CDS 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG + chr5.2:11829495-11829514 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG - chr5.2:11830415-11830434 MS.gene010525:CDS 60.0%
AGCCAACCTCCACACGGAGC+TGG - chr5.2:11830091-11830110 MS.gene010525:intron 65.0%
AGGGAAGGGAGGCGGGAGTA+TGG - chr5.2:11829418-11829437 MS.gene010525:intron 65.0%
! GGGAAGGGAGGCGGGAGTAT+GGG - chr5.2:11829419-11829438 MS.gene010525:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 11828297 11830732 11828297 ID=MS.gene010525
chr5.2 mRNA 11828297 11830732 11828297 ID=MS.gene010525.t1;Parent=MS.gene010525
chr5.2 exon 11830415 11830732 11830415 ID=MS.gene010525.t1.exon1;Parent=MS.gene010525.t1
chr5.2 CDS 11830415 11830732 11830415 ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1
chr5.2 exon 11830223 11830310 11830223 ID=MS.gene010525.t1.exon2;Parent=MS.gene010525.t1
chr5.2 CDS 11830223 11830310 11830223 ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1
chr5.2 exon 11829066 11829195 11829066 ID=MS.gene010525.t1.exon3;Parent=MS.gene010525.t1
chr5.2 CDS 11829066 11829195 11829066 ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1
chr5.2 exon 11828297 11828975 11828297 ID=MS.gene010525.t1.exon4;Parent=MS.gene010525.t1
chr5.2 CDS 11828297 11828975 11828297 ID=cds.MS.gene010525.t1;Parent=MS.gene010525.t1
Gene Sequence

>MS.gene010525

ATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGGTGATTAATTCTTCACTCCTTTTTTGGCGTAATTGTTGTTTTTCGCTGCTTATCCATTTTGGTTGTTCTGTATCTTATGCTCTCTACTTTTTGTTTATGAATAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATGTAAGTTTGCTTCAATGTGGATAATGTTGCAGATGTAAACAATTTTTTTCATTTTTTTTTCTCAAAGGGTGTCATCTTGCATTTGAATTTTGAATCACTTTTGAAAACTTGGAGTTTATGAATTTAGATCTTGAACGGCTATTTTATTGCACTAAATATGTAGGGTTTTTCATATATAAAACAAATCACTACACATCACAATTACGTCATCATCTTGAGAACTTTCTCAAATTAATTACTTGGTGTTCGAACATGTGCATTACATGGTTTCGAACACGTGCACATGTGTGAGATATTTTAAATAAGAAATATACAAAATCGATTTTCTAAATCAAATTCACTACACATCACGATTACGTCATCATCTTGAGAACTTTCTTAAATTAATTACACGTGCATTATTTGGTACTCGAACACGTGCACATGTGTGAGATATTCTAAATAATAAATAGACAAAATTGATTTTTTTTTTATTGTAATGCTAAATTTTAGGGCTAATTCTACGGCGTAGACCGCATCAGACCAATACTTGAAAATTGCTTAAAACTGTGATGCGATCGACATTGCCTCATAGTTAAGAAATTACTTGTTCAATGTTGATTCGACAAAAAAGGGAAGGGAGGCGGGAGTATGGGTGCCTCAACTCAACTCATTTGTTTCCCTTTATTTGGGTGATTTTAAAGTGCCGGTTCACCCTAGAGGCTGTCGGATTTTAGATTTATATAAATGAACTTTTCTTTTCTTTCGTTGAAAAACTAGAAGTGCATTTCTTTGGAGTCATAGTATGAAATGGGATAATGAAAAAATGAGTCATAAAAAACTGCAAATAGATGTTCTTTTTCATTGTTGGATTGAAGTTACAACATATTTTTTTTTTTTAACTTCTGACTTGAATGGGACAGAAATTGGCTGAACCTGTGGATACACCTCAACCGATTTGTGCTTTGTTTTCCTCCGTTCAATTCACCTTAATGATTTTGAAATTGGTATTTGAGAAGCTTGTTCTCTTCTGTTTTTTCTTATACAGCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTAAGTTTTGGTCGATAGAAATTTTACTTGCCCACTTTTCAAATTTCCAACACACTATTTTATCTGCTAACTGATGATAAATTTTGACAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAACATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>MS.gene010525.t1

MRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE