Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010961.t1 | GAU37701.1 | 84.7 | 242 | 37 | 0 | 7 | 248 | 48 | 289 | 5.20E-47 | 198 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010961.t1 | F4JIP6 | 55.0 | 151 | 68 | 0 | 89 | 239 | 143 | 293 | 2.5e-21 | 104.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010961.t1 | A0A2Z6N1V6 | 84.7 | 242 | 37 | 0 | 7 | 248 | 48 | 289 | 3.8e-47 | 198.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene010961 | MS.gene56256 | PPI |
MS.gene51627 | MS.gene010961 | PPI |
MS.gene009458 | MS.gene010961 | PPI |
MS.gene010961 | MS.gene63514 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010961.t1 | MTR_7g451810 | 89.723 | 253 | 21 | 1 | 1 | 248 | 33 | 285 | 3.35e-163 | 453 |
MS.gene010961.t1 | MTR_7g047630 | 89.723 | 253 | 21 | 1 | 1 | 248 | 33 | 285 | 3.35e-163 | 453 |
MS.gene010961.t1 | MTR_7g047660 | 60.606 | 66 | 19 | 2 | 180 | 245 | 76 | 134 | 1.28e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010961.t1 | AT4G05210 | 70.248 | 242 | 72 | 0 | 1 | 242 | 44 | 285 | 3.39e-125 | 357 |
MS.gene010961.t1 | AT4G05210 | 72.340 | 235 | 65 | 0 | 8 | 242 | 69 | 303 | 1.43e-124 | 356 |
MS.gene010961.t1 | AT4G21220 | 72.807 | 228 | 62 | 0 | 12 | 239 | 66 | 293 | 7.87e-122 | 349 |
MS.gene010961.t1 | AT4G05210 | 66.265 | 249 | 53 | 2 | 19 | 242 | 80 | 322 | 3.48e-113 | 328 |
Find 55 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGCTCATTCAACGATAAT+TGG | 0.126270 | 7.1:-51277362 | MS.gene010961:CDS |
TCAAGATCAGAGGATAATTT+TGG | 0.162212 | 7.1:-51277560 | MS.gene010961:intron |
AGCTGGAGAGATACATTTAT+TGG | 0.239574 | 7.1:-51275345 | MS.gene010961:CDS |
ATTGGCCACAATGTAGTTAT+TGG | 0.252137 | 7.1:-51275213 | MS.gene010961:CDS |
TGTGGACAAGTTGGGATTGC+AGG | 0.275865 | 7.1:-51275174 | MS.gene010961:CDS |
ATCACAGAACCTGGAGATTA+TGG | 0.315331 | 7.1:-51274415 | MS.gene010961:CDS |
TCAAATGTTCGTATTGGTTC+CGG | 0.350732 | 7.1:-51277410 | MS.gene010961:CDS |
CAGAAGCTCAATGTAATAGT+AGG | 0.355997 | 7.1:-51275724 | MS.gene010961:CDS |
GTAGGGAACAATGTGGAAAT+TGG | 0.367733 | 7.1:-51275706 | MS.gene010961:CDS |
GAAGATAGATAATTTAGTTC+AGG | 0.370626 | 7.1:-51275313 | MS.gene010961:intron |
GCTGGAGAGATACATTTATT+GGG | 0.371063 | 7.1:-51275344 | MS.gene010961:CDS |
TTGGCCACAATGTAGTTATT+GGG | 0.373724 | 7.1:-51275212 | MS.gene010961:CDS |
AGTCAATACAAGCTGATTCA+TGG | 0.378580 | 7.1:+51277486 | None:intergenic |
GAAAACCAGCATTACCATCT+TGG | 0.393680 | 7.1:+51276209 | None:intergenic |
TGTTGGAGCTATTGTTCATT+CGG | 0.412894 | 7.1:-51277447 | MS.gene010961:CDS |
ATTGGTTCCGGAACTGTGAT+TGG | 0.416082 | 7.1:-51277398 | MS.gene010961:CDS |
GTTCATTCGGAATCTGTTGT+TGG | 0.417200 | 7.1:-51277434 | MS.gene010961:CDS |
TCACTTAGTAATTGCAGTAT+AGG | 0.425405 | 7.1:-51276268 | MS.gene010961:CDS |
GTTGGTTCAAATGTTCGTAT+TGG | 0.436861 | 7.1:-51277416 | MS.gene010961:CDS |
TTGCTCATTCAACGATAATT+GGG | 0.448245 | 7.1:-51277361 | MS.gene010961:intron |
TCCAGGTTCTGTGATGTCCT+TGG | 0.461823 | 7.1:+51274423 | None:intergenic |
GTGCAAATACATGCATTGAC+AGG | 0.462960 | 7.1:-51275684 | MS.gene010961:CDS |
ATTATGTGACGATGGGAGGA+AGG | 0.470760 | 7.1:-51275013 | MS.gene010961:CDS |
TGTAGGTTTCTATTCACAAA+TGG | 0.471353 | 7.1:-51274253 | MS.gene010961:intron |
GGGAAGAATTGCATGCTTTG+TGG | 0.489093 | 7.1:-51275192 | MS.gene010961:CDS |
GCATGCTTTGTGGACAAGTT+GGG | 0.495459 | 7.1:-51275182 | MS.gene010961:CDS |
ACCAAGGACATCACAGAACC+TGG | 0.502358 | 7.1:-51274424 | MS.gene010961:CDS |
TCCTCTAACTGCAAAACTGC+TGG | 0.516609 | 7.1:+51274217 | None:intergenic |
TCATGTATCGATTGCATCAA+AGG | 0.517806 | 7.1:-51274976 | MS.gene010961:intron |
TGCATGCTTTGTGGACAAGT+TGG | 0.519011 | 7.1:-51275183 | MS.gene010961:CDS |
AGAAGGTCCAATCACAGTTC+CGG | 0.533227 | 7.1:+51277391 | None:intergenic |
GTCTTGTGTTTCAAGATCAG+AGG | 0.535088 | 7.1:-51277570 | MS.gene010961:intron |
ATACATGCATTGACAGGGGC+AGG | 0.537225 | 7.1:-51275678 | MS.gene010961:intron |
AGAAGCTCAATGTAATAGTA+GGG | 0.553263 | 7.1:-51275723 | MS.gene010961:CDS |
GGAGTCTGCATCGGCCAAGA+TGG | 0.554140 | 7.1:-51276223 | MS.gene010961:intron |
GGAAAGCCACCATAATCTCC+AGG | 0.557434 | 7.1:+51274406 | None:intergenic |
TATCAATGCATATAGTAAGC+AGG | 0.558549 | 7.1:-51278228 | None:intergenic |
TGCAAATACATGCATTGACA+GGG | 0.560693 | 7.1:-51275683 | MS.gene010961:CDS |
TTAAATTTATCATCACTGAA+AGG | 0.571723 | 7.1:+51277536 | None:intergenic |
GGAGATTATGTGACGATGGG+AGG | 0.576832 | 7.1:-51275017 | MS.gene010961:CDS |
ATCAGCTTGTATTGACTCAA+CGG | 0.577465 | 7.1:-51277480 | MS.gene010961:CDS |
CATAGGAGATTATGTGACGA+TGG | 0.588173 | 7.1:-51275021 | MS.gene010961:CDS |
TTATGTGACGATGGGAGGAA+GGG | 0.590326 | 7.1:-51275012 | MS.gene010961:CDS |
AGGTTTCTATTCACAAATGG+CGG | 0.594531 | 7.1:-51274250 | MS.gene010961:CDS |
ATAGGAGATTATGTGACGAT+GGG | 0.605328 | 7.1:-51275020 | MS.gene010961:CDS |
CTGGAGAGATACATTTATTG+GGG | 0.609991 | 7.1:-51275343 | MS.gene010961:CDS |
ATTCACAATGGAGTCTGCAT+CGG | 0.617437 | 7.1:-51276232 | MS.gene010961:CDS |
TGCGTTAAGTTGTGTAACCA+AGG | 0.629797 | 7.1:-51274440 | MS.gene010961:CDS |
GAATGAGCAATAGAAACAGA+AGG | 0.635454 | 7.1:+51277374 | None:intergenic |
TAACATGATAAAGAAGCCAC+AGG | 0.643538 | 7.1:-51275868 | MS.gene010961:intron |
TCTTCCCAATAACTACATTG+TGG | 0.648401 | 7.1:+51275208 | None:intergenic |
ACAGAACCTGGAGATTATGG+TGG | 0.680720 | 7.1:-51274412 | MS.gene010961:CDS |
GATTCATGTGTAATTCACAA+TGG | 0.714443 | 7.1:-51276244 | MS.gene010961:CDS |
TGTAATAGTAGGGAACAATG+TGG | 0.718516 | 7.1:-51275713 | MS.gene010961:CDS |
GCAAATACATGCATTGACAG+GGG | 0.723551 | 7.1:-51275682 | MS.gene010961:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTAAAAAATGGAAAAA+TGG | - | chr7.1:51274913-51274932 | MS.gene010961:intron | 10.0% |
!! | AGTATAAATAAATAAATAAC+CGG | + | chr7.1:51275616-51275635 | None:intergenic | 10.0% |
!! | ATTTAATTAAAAAGAAAGAA+AGG | + | chr7.1:51274812-51274831 | None:intergenic | 10.0% |
!! | TAATATTTATTATATTACCT+TGG | - | chr7.1:51275187-51275206 | MS.gene010961:CDS | 10.0% |
!! | TATTTATTTATACTTTACAT+TGG | - | chr7.1:51275622-51275641 | MS.gene010961:intron | 10.0% |
!! | AAAAATGAAAATTAACTTAC+CGG | + | chr7.1:51274773-51274792 | None:intergenic | 15.0% |
!! | GTGATGATAAATTTAAAAAA+TGG | - | chr7.1:51274905-51274924 | MS.gene010961:intron | 15.0% |
!! | TTAAATTTGATACATTAAGA+GGG | + | chr7.1:51275403-51275422 | None:intergenic | 15.0% |
!! | TTAAGTGTAATTATTTATGT+TGG | + | chr7.1:51275787-51275806 | None:intergenic | 15.0% |
!! | TTAATTAGTTAGAAAATTAC+AGG | - | chr7.1:51276870-51276889 | MS.gene010961:intron | 15.0% |
!! | TTATTTGTAATTATGTATAG+AGG | - | chr7.1:51276011-51276030 | MS.gene010961:intron | 15.0% |
!! | TTTAAATTTGATACATTAAG+AGG | + | chr7.1:51275404-51275423 | None:intergenic | 15.0% |
!!! | AATTTTTTTTTTTAAGCTTC+CGG | + | chr7.1:51274305-51274324 | None:intergenic | 15.0% |
!!! | ATTTTTACTGTTTGTAAATT+GGG | - | chr7.1:51277915-51277934 | MS.gene010961:intron | 15.0% |
!!! | TATTTTTACTGTTTGTAAAT+TGG | - | chr7.1:51277914-51277933 | MS.gene010961:intron | 15.0% |
!! | AACTAATTATATTCACTCAT+TGG | - | chr7.1:51277060-51277079 | MS.gene010961:intron | 20.0% |
!! | AAGAAACTTTCAACATATAT+AGG | + | chr7.1:51276622-51276641 | None:intergenic | 20.0% |
!! | AATTTGTAATTGTATTGAAG+AGG | - | chr7.1:51276107-51276126 | MS.gene010961:intron | 20.0% |
!! | AGCAATCTTCTAATAATATT+TGG | - | chr7.1:51274530-51274549 | MS.gene010961:intron | 20.0% |
!! | ATATCAAACTATAATGATCT+TGG | - | chr7.1:51277579-51277598 | MS.gene010961:intron | 20.0% |
!! | CACAAAATACATATTATATG+TGG | - | chr7.1:51276371-51276390 | MS.gene010961:intron | 20.0% |
!! | GAGTGAAATTCAATAAATAA+TGG | + | chr7.1:51275222-51275241 | None:intergenic | 20.0% |
!! | TATACTTTACATTGGAAATA+TGG | - | chr7.1:51275630-51275649 | MS.gene010961:intron | 20.0% |
!! | TATGATTCTTTGCAATATTT+AGG | + | chr7.1:51275687-51275706 | None:intergenic | 20.0% |
!! | TTAAAGATTTGAAAGACATT+GGG | - | chr7.1:51277616-51277635 | MS.gene010961:intron | 20.0% |
!! | TTAAATTTATCATCACTGAA+AGG | + | chr7.1:51274901-51274920 | None:intergenic | 20.0% |
!! | TTTAAAAAATGGAAAAATGG+TGG | - | chr7.1:51274916-51274935 | MS.gene010961:intron | 20.0% |
!!! | ATGTTTTTTTTTTTGACTAG+AGG | - | chr7.1:51277648-51277667 | MS.gene010961:intron | 20.0% |
!!! | ATTGGAAATATGGTTTTAAA+TGG | - | chr7.1:51275640-51275659 | MS.gene010961:intron | 20.0% |
!!! | GTTGTTATGTAGTAAATTTT+GGG | - | chr7.1:51277314-51277333 | MS.gene010961:intron | 20.0% |
!!! | GTTTAACAATAATTTTCAAC+TGG | - | chr7.1:51276645-51276664 | MS.gene010961:intron | 20.0% |
!!! | TCGTAATTTTAATACATTCA+AGG | - | chr7.1:51275542-51275561 | MS.gene010961:intron | 20.0% |
!!! | TGCTTGTTTTTTAATAGTTA+AGG | - | chr7.1:51276254-51276273 | MS.gene010961:CDS | 20.0% |
!!! | TGTTGTTATGTAGTAAATTT+TGG | - | chr7.1:51277313-51277332 | MS.gene010961:intron | 20.0% |
! | AATAATGGTATATTAGTCCA+AGG | + | chr7.1:51275207-51275226 | None:intergenic | 25.0% |
! | AATACAATGCACTAATGTTA+CGG | + | chr7.1:51276508-51276527 | None:intergenic | 25.0% |
! | ACAAACAGAAGATATATTCA+AGG | - | chr7.1:51275444-51275463 | MS.gene010961:intron | 25.0% |
! | ATCATGAAGCTAAATAGAAA+AGG | + | chr7.1:51276804-51276823 | None:intergenic | 25.0% |
! | ATTAGTTAGAAAATTACAGG+AGG | - | chr7.1:51276873-51276892 | MS.gene010961:intron | 25.0% |
! | GTAATTATTTATGTTGGTGT+CGG | + | chr7.1:51275781-51275800 | None:intergenic | 25.0% |
! | GTGTAATTTCACTTGAATTT+AGG | + | chr7.1:51276951-51276970 | None:intergenic | 25.0% |
! | GTTAAAGATTTGAAAGACAT+TGG | - | chr7.1:51277615-51277634 | MS.gene010961:intron | 25.0% |
! | TAAAAATACGAAATTAACCC+TGG | + | chr7.1:51274477-51274496 | None:intergenic | 25.0% |
! | TATGAAAAGAGCTAAATTTC+AGG | + | chr7.1:51277694-51277713 | None:intergenic | 25.0% |
! | TCAAAAAATGTATGAGTGAA+AGG | - | chr7.1:51276827-51276846 | MS.gene010961:intron | 25.0% |
! | TCAATTGAACATTTGAATAG+CGG | + | chr7.1:51277865-51277884 | None:intergenic | 25.0% |
! | TTGATTAGCGAATGAATAAT+TGG | - | chr7.1:51277522-51277541 | MS.gene010961:CDS | 25.0% |
!! | AAAGGAAACTAATTTTCTTC+TGG | + | chr7.1:51274641-51274660 | None:intergenic | 25.0% |
!! | AGACAATATATTTTCGATCA+AGG | + | chr7.1:51275985-51276004 | None:intergenic | 25.0% |
!! | AGGGTTAATTTCGTATTTTT+AGG | - | chr7.1:51274476-51274495 | MS.gene010961:intron | 25.0% |
!! | GAAGATAGATAATTTAGTTC+AGG | - | chr7.1:51277121-51277140 | MS.gene010961:intron | 25.0% |
!!! | AAATTTTGGGATGATATATC+TGG | - | chr7.1:51277327-51277346 | MS.gene010961:intron | 25.0% |
!!! | ATTTTGAGAAACAAACTAAC+TGG | - | chr7.1:51275491-51275510 | MS.gene010961:intron | 25.0% |
!!! | ATTTTGCTTTTCAATGTGAT+AGG | - | chr7.1:51275152-51275171 | MS.gene010961:intron | 25.0% |
!!! | GAATTTGCAATTTTAACTTC+CGG | + | chr7.1:51274355-51274374 | None:intergenic | 25.0% |
!!! | GGGTTAATTTCGTATTTTTA+GGG | - | chr7.1:51274477-51274496 | MS.gene010961:intron | 25.0% |
!!! | TTAATTTCGTATTTTTAGGG+AGG | - | chr7.1:51274480-51274499 | MS.gene010961:intron | 25.0% |
AAAAAATGGAAAAATGGTGG+TGG | - | chr7.1:51274919-51274938 | MS.gene010961:intron | 30.0% | |
AGAAGCTCAATGTAATAGTA+GGG | - | chr7.1:51276711-51276730 | MS.gene010961:intron | 30.0% | |
AGGATCAAATCAATTAACGA+AGG | - | chr7.1:51275464-51275483 | MS.gene010961:intron | 30.0% | |
ATTGAATCAACTCAACTGAT+CGG | - | chr7.1:51275287-51275306 | MS.gene010961:intron | 30.0% | |
ATTGAGTGTGATTGAGAAAA+GGG | + | chr7.1:51274684-51274703 | None:intergenic | 30.0% | |
ATTGCTCATTCAACGATAAT+TGG | - | chr7.1:51275072-51275091 | MS.gene010961:intron | 30.0% | |
CTTAATTACTCCTGGAATAA+TGG | - | chr7.1:51275244-51275263 | MS.gene010961:intron | 30.0% | |
GATTCATGTGTAATTCACAA+TGG | - | chr7.1:51276190-51276209 | MS.gene010961:intron | 30.0% | |
TATGCAAAAACAAAAGTGAG+AGG | + | chr7.1:51275122-51275141 | None:intergenic | 30.0% | |
TATTGAGTGTGATTGAGAAA+AGG | + | chr7.1:51274685-51274704 | None:intergenic | 30.0% | |
TCACTTAGTAATTGCAGTAT+AGG | - | chr7.1:51276166-51276185 | MS.gene010961:intron | 30.0% | |
TCTCAAATTATTAGCAGTGT+CGG | - | chr7.1:51275817-51275836 | MS.gene010961:intron | 30.0% | |
TGACATGCATACATGTTATT+GGG | - | chr7.1:51278123-51278142 | MS.gene010961:intron | 30.0% | |
TGTAGGTTTCTATTCACAAA+TGG | - | chr7.1:51278181-51278200 | MS.gene010961:intron | 30.0% | |
TGTCTGAAAACTTGTATATG+TGG | - | chr7.1:51276050-51276069 | MS.gene010961:intron | 30.0% | |
TTATTCCAGGAGTAATTAAG+TGG | + | chr7.1:51275244-51275263 | None:intergenic | 30.0% | |
TTGACAAAAATACAGTGACA+CGG | + | chr7.1:51276327-51276346 | None:intergenic | 30.0% | |
TTGACATGCATACATGTTAT+TGG | - | chr7.1:51278122-51278141 | MS.gene010961:intron | 30.0% | |
TTGCTCATTCAACGATAATT+GGG | - | chr7.1:51275073-51275092 | MS.gene010961:intron | 30.0% | |
! | AACTACCAGATTTTATGAAC+AGG | - | chr7.1:51274432-51274451 | MS.gene010961:CDS | 30.0% |
! | ACAAGTTTTCAGACATAAAC+AGG | + | chr7.1:51276045-51276064 | None:intergenic | 30.0% |
! | ATGTATTTTGTGTGCATGTT+TGG | + | chr7.1:51276363-51276382 | None:intergenic | 30.0% |
! | ATTCAAGGAGTATAATGACA+TGG | - | chr7.1:51275557-51275576 | MS.gene010961:intron | 30.0% |
! | CATTTAACTTTAGCAGTAGA+TGG | - | chr7.1:51276402-51276421 | MS.gene010961:intron | 30.0% |
! | TCAAGATCAGAGGATAATTT+TGG | - | chr7.1:51274874-51274893 | MS.gene010961:intron | 30.0% |
! | TGTATTTTACATGCAGGATT+TGG | - | chr7.1:51276522-51276541 | MS.gene010961:intron | 30.0% |
! | TTCAAGGAGTATAATGACAT+GGG | - | chr7.1:51275558-51275577 | MS.gene010961:intron | 30.0% |
! | TTTTAAGCTTCCGGTATATA+CGG | + | chr7.1:51274296-51274315 | None:intergenic | 30.0% |
!!! | AGGTATGCTTTTGTTTTACT+TGG | - | chr7.1:51277478-51277497 | MS.gene010961:CDS | 30.0% |
!!! | CTCACTTTTGTTTTTGCATA+AGG | - | chr7.1:51275122-51275141 | MS.gene010961:intron | 30.0% |
!!! | GATGCTAGTATATTTTTTCC+AGG | - | chr7.1:51276134-51276153 | MS.gene010961:intron | 30.0% |
!!! | GGAAATATGGTTTTAAATGG+TGG | - | chr7.1:51275643-51275662 | MS.gene010961:intron | 30.0% |
!!! | GTTCAAGTTTTTAAGTACCA+GGG | - | chr7.1:51274457-51274476 | MS.gene010961:intron | 30.0% |
AACCTCCTGTTCATAAAATC+TGG | + | chr7.1:51274440-51274459 | None:intergenic | 35.0% | |
AATGTCCGTGACAACAATAT+GGG | + | chr7.1:51275954-51275973 | None:intergenic | 35.0% | |
ACTAAGTGAGATGTTAAACC+TGG | + | chr7.1:51276155-51276174 | None:intergenic | 35.0% | |
ACTACTTCTTCTTCTTGTTC+CGG | - | chr7.1:51274751-51274770 | MS.gene010961:intron | 35.0% | |
AGCTGGAGAGATACATTTAT+TGG | - | chr7.1:51277089-51277108 | MS.gene010961:intron | 35.0% | |
AGCTTATGCTGCCTAAAAAA+TGG | - | chr7.1:51275886-51275905 | MS.gene010961:CDS | 35.0% | |
AGGTTTCTATTCACAAATGG+CGG | - | chr7.1:51278184-51278203 | MS.gene010961:intron | 35.0% | |
ATAGGAGATTATGTGACGAT+GGG | - | chr7.1:51277414-51277433 | MS.gene010961:CDS | 35.0% | |
ATGCATACATGTTATTGGGT+TGG | - | chr7.1:51278127-51278146 | MS.gene010961:intron | 35.0% | |
ATTGGCCACAATGTAGTTAT+TGG | - | chr7.1:51277221-51277240 | MS.gene010961:intron | 35.0% | |
CAAATTCCAAAATGTGCATC+CGG | - | chr7.1:51274368-51274387 | MS.gene010961:intron | 35.0% | |
CAGAAGCTCAATGTAATAGT+AGG | - | chr7.1:51276710-51276729 | MS.gene010961:intron | 35.0% | |
CCTAAAAAATGGTTGCATTG+CGG | - | chr7.1:51275897-51275916 | MS.gene010961:CDS | 35.0% | |
CTGGAGAGATACATTTATTG+GGG | - | chr7.1:51277091-51277110 | MS.gene010961:intron | 35.0% | |
GAAGAAGTAGTAGAGAAATG+AGG | + | chr7.1:51274742-51274761 | None:intergenic | 35.0% | |
GAATGAGCAATAGAAACAGA+AGG | + | chr7.1:51275063-51275082 | None:intergenic | 35.0% | |
GATCTTGAAACACAAGACAA+AGG | + | chr7.1:51274862-51274881 | None:intergenic | 35.0% | |
GCTGGAGAGATACATTTATT+GGG | - | chr7.1:51277090-51277109 | MS.gene010961:intron | 35.0% | |
GGATCAAAGTGATTCTTTAC+CGG | - | chr7.1:51275594-51275613 | MS.gene010961:intron | 35.0% | |
TAACATGATAAAGAAGCCAC+AGG | - | chr7.1:51276566-51276585 | MS.gene010961:intron | 35.0% | |
TAATGTCCGTGACAACAATA+TGG | + | chr7.1:51275955-51275974 | None:intergenic | 35.0% | |
TACTTGCAATCCGTATATAC+CGG | - | chr7.1:51274283-51274302 | MS.gene010961:intron | 35.0% | |
TAGAAACCTACAAAGCAACA+AGG | + | chr7.1:51278173-51278192 | None:intergenic | 35.0% | |
TAGAACTAAAGTTATTGCCG+AGG | - | chr7.1:51277362-51277381 | MS.gene010961:CDS | 35.0% | |
TCTTCCCAATAACTACATTG+TGG | + | chr7.1:51277229-51277248 | None:intergenic | 35.0% | |
TGCATACATGTTATTGGGTT+GGG | - | chr7.1:51278128-51278147 | MS.gene010961:intron | 35.0% | |
TGTAATAGTAGGGAACAATG+TGG | - | chr7.1:51276721-51276740 | MS.gene010961:intron | 35.0% | |
TGTTGAAGTTGAACGAACAA+AGG | + | chr7.1:51274659-51274678 | None:intergenic | 35.0% | |
TGTTGGAGCTATTGTTCATT+CGG | - | chr7.1:51274987-51275006 | MS.gene010961:CDS | 35.0% | |
TGTTTGTAAATTGGGTGCTT+GGG | - | chr7.1:51277923-51277942 | MS.gene010961:intron | 35.0% | |
TTCTGTTTGTCAGTGACTTA+GGG | + | chr7.1:51275434-51275453 | None:intergenic | 35.0% | |
TTGAGTGTGATTGAGAAAAG+GGG | + | chr7.1:51274683-51274702 | None:intergenic | 35.0% | |
TTGGCCACAATGTAGTTATT+GGG | - | chr7.1:51277222-51277241 | MS.gene010961:intron | 35.0% | |
! | AGTCAATACAAGCTGATTCA+TGG | + | chr7.1:51274951-51274970 | None:intergenic | 35.0% |
! | AGTTTTCATCTTCACACTCA+CGG | - | chr7.1:51277735-51277754 | MS.gene010961:intron | 35.0% |
! | GGATTTTATGTGGATAGTGA+CGG | - | chr7.1:51276543-51276562 | MS.gene010961:intron | 35.0% |
! | GTGCATTGTATTTTACATGC+AGG | - | chr7.1:51276516-51276535 | MS.gene010961:intron | 35.0% |
! | GTTGGTTCAAATGTTCGTAT+TGG | - | chr7.1:51275018-51275037 | MS.gene010961:CDS | 35.0% |
! | TACCAGATTTTATGAACAGG+AGG | - | chr7.1:51274435-51274454 | MS.gene010961:CDS | 35.0% |
! | TCAAGGAGTATAATGACATG+GGG | - | chr7.1:51275559-51275578 | MS.gene010961:intron | 35.0% |
! | TGCAAATACATGCATTGACA+GGG | - | chr7.1:51276751-51276770 | MS.gene010961:intron | 35.0% |
! | TGCAGGATTTGGATTTTATG+TGG | - | chr7.1:51276533-51276552 | MS.gene010961:intron | 35.0% |
! | TTTTGTGTGCATGTTTGGAT+TGG | + | chr7.1:51276358-51276377 | None:intergenic | 35.0% |
!! | ATCAGCTTGTATTGACTCAA+CGG | - | chr7.1:51274954-51274973 | MS.gene010961:intron | 35.0% |
!! | GATCAGTTGAGTTGATTCAA+TGG | + | chr7.1:51275288-51275307 | None:intergenic | 35.0% |
!! | TCAAATGTTCGTATTGGTTC+CGG | - | chr7.1:51275024-51275043 | MS.gene010961:CDS | 35.0% |
!! | TCATGTATCGATTGCATCAA+AGG | - | chr7.1:51277458-51277477 | MS.gene010961:CDS | 35.0% |
!! | TTCTGATTAGTTCTGCAGAT+TGG | - | chr7.1:51277203-51277222 | MS.gene010961:intron | 35.0% |
!!! | ATGGTTTTAAATGGTGGTCA+TGG | - | chr7.1:51275649-51275668 | MS.gene010961:intron | 35.0% |
!!! | GGTTCAAGTTTTTAAGTACC+AGG | - | chr7.1:51274456-51274475 | MS.gene010961:intron | 35.0% |
!!! | TTGTTTTACTTGGTGCATTG+AGG | - | chr7.1:51277488-51277507 | MS.gene010961:CDS | 35.0% |
AAGGTTGGATACTGGGTAAT+TGG | + | chr7.1:51274568-51274587 | None:intergenic | 40.0% | |
ACAATATGGGTCACGCATAA+CGG | + | chr7.1:51275941-51275960 | None:intergenic | 40.0% | |
ACAGAGAAACATGTAAGCCT+CGG | + | chr7.1:51277382-51277401 | None:intergenic | 40.0% | |
ACATTTAAACTGAGACGAGG+CGG | - | chr7.1:51275341-51275360 | MS.gene010961:CDS | 40.0% | |
AGGCTAAAGAGATATTGAGG+GGG | - | chr7.1:51274500-51274519 | MS.gene010961:intron | 40.0% | |
ATCACAGAACCTGGAGATTA+TGG | - | chr7.1:51278019-51278038 | MS.gene010961:intron | 40.0% | |
ATGATAAAGAAGCCACAGGT+TGG | - | chr7.1:51276570-51276589 | MS.gene010961:intron | 40.0% | |
ATTACGCCAAACTTATTGCC+AGG | + | chr7.1:51276302-51276321 | None:intergenic | 40.0% | |
ATTCACAATGGAGTCTGCAT+CGG | - | chr7.1:51276202-51276221 | MS.gene010961:intron | 40.0% | |
CAAGACAAATTACCAACCTG+TGG | + | chr7.1:51276585-51276604 | None:intergenic | 40.0% | |
CATAGGAGATTATGTGACGA+TGG | - | chr7.1:51277413-51277432 | MS.gene010961:CDS | 40.0% | |
CGGTGAGTATGACAAAATCA+CGG | + | chr7.1:51277845-51277864 | None:intergenic | 40.0% | |
CTCTGTTATGTGTTCAGCAT+AGG | - | chr7.1:51277396-51277415 | MS.gene010961:CDS | 40.0% | |
CTGTTTGTAAATTGGGTGCT+TGG | - | chr7.1:51277922-51277941 | MS.gene010961:intron | 40.0% | |
CTTCTGTTTGTCAGTGACTT+AGG | + | chr7.1:51275435-51275454 | None:intergenic | 40.0% | |
GAAAACCAGCATTACCATCT+TGG | + | chr7.1:51276228-51276247 | None:intergenic | 40.0% | |
GACATGGGGTAACACATTTA+AGG | - | chr7.1:51275573-51275592 | MS.gene010961:intron | 40.0% | |
GACTAGTAGATCATTACAGC+AGG | + | chr7.1:51278052-51278071 | None:intergenic | 40.0% | |
GAGGCTAAAGAGATATTGAG+GGG | - | chr7.1:51274499-51274518 | MS.gene010961:intron | 40.0% | |
GGAGGCTAAAGAGATATTGA+GGG | - | chr7.1:51274498-51274517 | MS.gene010961:intron | 40.0% | |
GTAGGGAACAATGTGGAAAT+TGG | - | chr7.1:51276728-51276747 | MS.gene010961:intron | 40.0% | |
GTCTTGTGTTTCAAGATCAG+AGG | - | chr7.1:51274864-51274883 | MS.gene010961:intron | 40.0% | |
GTGACATTTAAACTGAGACG+AGG | - | chr7.1:51275338-51275357 | MS.gene010961:CDS | 40.0% | |
GTGTCAAACACCATTATTCC+AGG | + | chr7.1:51275257-51275276 | None:intergenic | 40.0% | |
GTTCATTCGGAATCTGTTGT+TGG | - | chr7.1:51275000-51275019 | MS.gene010961:CDS | 40.0% | |
GTTTGTAAATTGGGTGCTTG+GGG | - | chr7.1:51277924-51277943 | MS.gene010961:intron | 40.0% | |
TAACTTCCGGCAGTTAGAAT+CGG | + | chr7.1:51274342-51274361 | None:intergenic | 40.0% | |
TACAACCTGTAATTCCTTGC+TGG | - | chr7.1:51277764-51277783 | MS.gene010961:intron | 40.0% | |
TACCAAGTGCATGTTTGCTT+TGG | - | chr7.1:51277790-51277809 | MS.gene010961:intron | 40.0% | |
TACCCAGTATCCAACCTTAT+CGG | - | chr7.1:51274570-51274589 | MS.gene010961:intron | 40.0% | |
TATGGACCTGGCAATAAGTT+TGG | - | chr7.1:51276293-51276312 | MS.gene010961:intron | 40.0% | |
TCACTCCACTTAATTACTCC+TGG | - | chr7.1:51275236-51275255 | MS.gene010961:intron | 40.0% | |
TCCATAGTGAACGATGACAA+TGG | - | chr7.1:51274606-51274625 | MS.gene010961:intron | 40.0% | |
TCGTTCACTATGGAGAAGAT+CGG | + | chr7.1:51274600-51274619 | None:intergenic | 40.0% | |
TGAGTATGACAAAATCACGG+TGG | + | chr7.1:51277842-51277861 | None:intergenic | 40.0% | |
TTAGAAACTCTGTGATGAGC+TGG | + | chr7.1:51276925-51276944 | None:intergenic | 40.0% | |
! | AAATGGTTGCATTGCGGTTT+TGG | - | chr7.1:51275903-51275922 | MS.gene010961:intron | 40.0% |
! | CAAGGAAGCTGGTTTATGAA+TGG | + | chr7.1:51278155-51278174 | None:intergenic | 40.0% |
! | GCAAATACATGCATTGACAG+GGG | - | chr7.1:51276752-51276771 | MS.gene010961:intron | 40.0% |
! | GTGCAAATACATGCATTGAC+AGG | - | chr7.1:51276750-51276769 | MS.gene010961:intron | 40.0% |
! | TATCTACCGGATGCACATTT+TGG | + | chr7.1:51274377-51274396 | None:intergenic | 40.0% |
! | TATTCCACATTTTGCACCTC+CGG | + | chr7.1:51274404-51274423 | None:intergenic | 40.0% |
! | TCAACGGCTTTTCTAGATGT+TGG | - | chr7.1:51274970-51274989 | MS.gene010961:intron | 40.0% |
! | TGCGTTAAGTTGTGTAACCA+AGG | - | chr7.1:51277994-51278013 | MS.gene010961:intron | 40.0% |
!! | TTTACTTGGTGCATTGAGGA+TGG | - | chr7.1:51277492-51277511 | MS.gene010961:CDS | 40.0% |
!!! | CCGCAATGCAACCATTTTTT+AGG | + | chr7.1:51275900-51275919 | None:intergenic | 40.0% |
!!! | GGGGCAGGTTATTTTTTTGA+TGG | - | chr7.1:51276771-51276790 | MS.gene010961:intron | 40.0% |
AACTTCCGGCAGTTAGAATC+GGG | + | chr7.1:51274341-51274360 | None:intergenic | 45.0% | |
AATGTATCTCTCCAGCTGCA+TGG | + | chr7.1:51277086-51277105 | None:intergenic | 45.0% | |
ACAGAACCTGGAGATTATGG+TGG | - | chr7.1:51278022-51278041 | MS.gene010961:intron | 45.0% | |
AGAAGGTCCAATCACAGTTC+CGG | + | chr7.1:51275046-51275065 | None:intergenic | 45.0% | |
ATTATGTGACGATGGGAGGA+AGG | - | chr7.1:51277421-51277440 | MS.gene010961:CDS | 45.0% | |
CAAGTGCATGTTTGCTTTGG+TGG | - | chr7.1:51277793-51277812 | MS.gene010961:intron | 45.0% | |
CAAGTGTCATGTTATGGACC+TGG | - | chr7.1:51276281-51276300 | MS.gene010961:CDS | 45.0% | |
CACCAAAGCAAACATGCACT+TGG | + | chr7.1:51277795-51277814 | None:intergenic | 45.0% | |
CAGGTCCATAACATGACACT+TGG | + | chr7.1:51276283-51276302 | None:intergenic | 45.0% | |
CGTGACCCATATTGTTGTCA+CGG | - | chr7.1:51275946-51275965 | MS.gene010961:intron | 45.0% | |
CGTTCACTATGGAGAAGATC+GGG | + | chr7.1:51274599-51274618 | None:intergenic | 45.0% | |
CTACAAAGCAACAAGGAAGC+TGG | + | chr7.1:51278166-51278185 | None:intergenic | 45.0% | |
CTCCGATAAGGTTGGATACT+GGG | + | chr7.1:51274575-51274594 | None:intergenic | 45.0% | |
GCACAGATACAAACACGACA+CGG | + | chr7.1:51275854-51275873 | None:intergenic | 45.0% | |
GCATGCTTTGTGGACAAGTT+GGG | - | chr7.1:51277252-51277271 | MS.gene010961:intron | 45.0% | |
GCCATTGTCATCGTTCACTA+TGG | + | chr7.1:51274610-51274629 | None:intergenic | 45.0% | |
GGACACCAAGTGTCATGTTA+TGG | - | chr7.1:51276275-51276294 | MS.gene010961:CDS | 45.0% | |
GGGAAGAATTGCATGCTTTG+TGG | - | chr7.1:51277242-51277261 | MS.gene010961:intron | 45.0% | |
GGGAGGCTAAAGAGATATTG+AGG | - | chr7.1:51274497-51274516 | MS.gene010961:intron | 45.0% | |
GTTCACTATGGAGAAGATCG+GGG | + | chr7.1:51274598-51274617 | None:intergenic | 45.0% | |
TACAGCCAGCAAGGAATTAC+AGG | + | chr7.1:51277772-51277791 | None:intergenic | 45.0% | |
TCCTCTAACTGCAAAACTGC+TGG | + | chr7.1:51278220-51278239 | None:intergenic | 45.0% | |
TGCATCCGGTAGATACATTC+CGG | - | chr7.1:51274382-51274401 | MS.gene010961:intron | 45.0% | |
TGCATGCTTTGTGGACAAGT+TGG | - | chr7.1:51277251-51277270 | MS.gene010961:intron | 45.0% | |
TTATGTGACGATGGGAGGAA+GGG | - | chr7.1:51277422-51277441 | MS.gene010961:CDS | 45.0% | |
! | AGAGGGTGTAACGATTCTCT+CGG | + | chr7.1:51275386-51275405 | None:intergenic | 45.0% |
! | ATTGGTTCCGGAACTGTGAT+TGG | - | chr7.1:51275036-51275055 | MS.gene010961:intron | 45.0% |
!! | CAGCTTCCTTGTTGCTTTGT+AGG | - | chr7.1:51278164-51278183 | MS.gene010961:intron | 45.0% |
ACCAAGGACATCACAGAACC+TGG | - | chr7.1:51278010-51278029 | MS.gene010961:intron | 50.0% | |
ACCAGGACACACCTAATCCA+AGG | + | chr7.1:51275740-51275759 | None:intergenic | 50.0% | |
ACTCTGTGATGAGCTGGCAT+AGG | + | chr7.1:51276919-51276938 | None:intergenic | 50.0% | |
ATCCGGTAGATACATTCCGG+AGG | - | chr7.1:51274385-51274404 | MS.gene010961:intron | 50.0% | |
CACCTCCGGAATGTATCTAC+CGG | + | chr7.1:51274390-51274409 | None:intergenic | 50.0% | |
GATTAGGTGTGTCCTGGTGT+CGG | - | chr7.1:51275742-51275761 | MS.gene010961:intron | 50.0% | |
GCACGAACACTCCTTGGATT+AGG | - | chr7.1:51275726-51275745 | MS.gene010961:intron | 50.0% | |
GCTCCGATAAGGTTGGATAC+TGG | + | chr7.1:51274576-51274595 | None:intergenic | 50.0% | |
GGAAAGCCACCATAATCTCC+AGG | + | chr7.1:51278031-51278050 | None:intergenic | 50.0% | |
GGAGATTATGTGACGATGGG+AGG | - | chr7.1:51277417-51277436 | MS.gene010961:CDS | 50.0% | |
GGTGAGTTCAGCAGAATCAC+TGG | - | chr7.1:51277814-51277833 | MS.gene010961:intron | 50.0% | |
TACGAAGCACGAACACTCCT+TGG | - | chr7.1:51275720-51275739 | MS.gene010961:CDS | 50.0% | |
TCCAGGTTCTGTGATGTCCT+TGG | + | chr7.1:51278014-51278033 | None:intergenic | 50.0% | |
TCTGATTGCAACGTGCTTGC+AGG | - | chr7.1:51277961-51277980 | MS.gene010961:intron | 50.0% | |
TGCATCCCGATTCTAACTGC+CGG | - | chr7.1:51274333-51274352 | MS.gene010961:intron | 50.0% | |
TTAAACTGAGACGAGGCGGA+GGG | - | chr7.1:51275345-51275364 | MS.gene010961:CDS | 50.0% | |
TTTAAACTGAGACGAGGCGG+AGG | - | chr7.1:51275344-51275363 | MS.gene010961:CDS | 50.0% | |
! | ATACATGCATTGACAGGGGC+AGG | - | chr7.1:51276756-51276775 | MS.gene010961:intron | 50.0% |
! | ATCGGCCAAGATGGTAATGC+TGG | - | chr7.1:51276220-51276239 | MS.gene010961:intron | 50.0% |
! | CATTCCGGAGGTGCAAAATG+TGG | - | chr7.1:51274397-51274416 | MS.gene010961:intron | 50.0% |
! | CTTGGTGCATTGAGGATGGT+TGG | - | chr7.1:51277496-51277515 | MS.gene010961:CDS | 50.0% |
! | GCCAGCAGTTTTGCAGTTAG+AGG | - | chr7.1:51278216-51278235 | MS.gene010961:intron | 50.0% |
! | TCCTTGGATTAGGTGTGTCC+TGG | - | chr7.1:51275736-51275755 | MS.gene010961:intron | 50.0% |
! | TGTGGACAAGTTGGGATTGC+AGG | - | chr7.1:51277260-51277279 | MS.gene010961:intron | 50.0% |
!! | AAGGAGTGTTCGTGCTTCGT+AGG | + | chr7.1:51275721-51275740 | None:intergenic | 50.0% |
AACACGACACGGACACTGAC+AGG | + | chr7.1:51275843-51275862 | None:intergenic | 55.0% | |
AGAAGATCGGGGCTCCGATA+AGG | + | chr7.1:51274587-51274606 | None:intergenic | 55.0% | |
TCACTCATTGGCCATGCAGC+TGG | - | chr7.1:51277072-51277091 | MS.gene010961:intron | 55.0% | |
TGCACTTGGTACAGCCAGCA+AGG | + | chr7.1:51277781-51277800 | None:intergenic | 55.0% | |
CACGACACGTATCCGACACC+AGG | + | chr7.1:51275757-51275776 | None:intergenic | 60.0% | |
GATCGGGGCTCCGATAAGGT+TGG | + | chr7.1:51274583-51274602 | None:intergenic | 60.0% | |
! | GGAGTCTGCATCGGCCAAGA+TGG | - | chr7.1:51276211-51276230 | MS.gene010961:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 51274211 | 51278245 | 51274211 | ID=MS.gene010961 |
chr7.1 | mRNA | 51274211 | 51278245 | 51274211 | ID=MS.gene010961.t1;Parent=MS.gene010961 |
chr7.1 | exon | 51278229 | 51278245 | 51278229 | ID=MS.gene010961.t1.exon1;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51278229 | 51278245 | 51278229 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51277362 | 51277577 | 51277362 | ID=MS.gene010961.t1.exon2;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51277362 | 51277577 | 51277362 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51276224 | 51276300 | 51276224 | ID=MS.gene010961.t1.exon3;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51276224 | 51276300 | 51276224 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51275869 | 51275918 | 51275869 | ID=MS.gene010961.t1.exon4;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51275869 | 51275918 | 51275869 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51275679 | 51275743 | 51275679 | ID=MS.gene010961.t1.exon5;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51275679 | 51275743 | 51275679 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51275314 | 51275365 | 51275314 | ID=MS.gene010961.t1.exon6;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51275314 | 51275365 | 51275314 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51275165 | 51275235 | 51275165 | ID=MS.gene010961.t1.exon7;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51275165 | 51275235 | 51275165 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51274977 | 51275043 | 51274977 | ID=MS.gene010961.t1.exon8;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51274977 | 51275043 | 51274977 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51274402 | 51274473 | 51274402 | ID=MS.gene010961.t1.exon9;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51274402 | 51274473 | 51274402 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
chr7.1 | exon | 51274211 | 51274270 | 51274211 | ID=MS.gene010961.t1.exon10;Parent=MS.gene010961.t1 |
chr7.1 | CDS | 51274211 | 51274270 | 51274211 | ID=cds.MS.gene010961.t1;Parent=MS.gene010961.t1 |
Gene Sequence |
Protein sequence |