Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011576.t1 | GAU48229.1 | 94.8 | 231 | 11 | 1 | 1 | 231 | 1 | 230 | 9.40E-113 | 416.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011576.t1 | Q9LD45 | 74.0 | 231 | 58 | 1 | 1 | 231 | 1 | 229 | 1.3e-94 | 347.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011576.t1 | A0A2Z6PN70 | 94.8 | 231 | 11 | 1 | 1 | 231 | 1 | 230 | 6.8e-113 | 416.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011576 | MS.gene036189 | PPI |
| MS.gene39943 | MS.gene011576 | PPI |
| MS.gene50537 | MS.gene011576 | PPI |
| MS.gene011576 | MS.gene49377 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011576.t1 | MTR_5g013340 | 74.486 | 243 | 57 | 1 | 1 | 243 | 1 | 238 | 6.96e-126 | 357 |
| MS.gene011576.t1 | MTR_5g013340 | 72.527 | 182 | 45 | 1 | 1 | 182 | 1 | 177 | 8.33e-88 | 259 |
| MS.gene011576.t1 | MTR_6g083250 | 59.494 | 158 | 61 | 1 | 18 | 172 | 3 | 160 | 4.96e-64 | 198 |
| MS.gene011576.t1 | MTR_4g099430 | 67.262 | 168 | 25 | 5 | 16 | 181 | 26 | 165 | 6.25e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011576.t1 | AT5G47120 | 73.640 | 239 | 61 | 1 | 1 | 239 | 1 | 237 | 5.86e-121 | 345 |
| MS.gene011576.t1 | AT4G17580 | 52.869 | 244 | 98 | 3 | 19 | 249 | 8 | 247 | 3.16e-79 | 239 |
| MS.gene011576.t1 | AT5G47130 | 48.696 | 230 | 108 | 4 | 22 | 247 | 2 | 225 | 4.68e-70 | 215 |
| MS.gene011576.t1 | AT5G47130 | 48.585 | 212 | 99 | 4 | 40 | 247 | 2 | 207 | 2.10e-61 | 192 |
| MS.gene011576.t1 | AT5G47130 | 47.619 | 189 | 89 | 4 | 63 | 247 | 4 | 186 | 2.55e-52 | 168 |
Find 63 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGCTTCCGCTCTGTTTC+AGG | 0.112158 | 8.4:+23580410 | MS.gene011576:CDS |
| CTTGGTGGCTTGCTTTCTTC+TGG | 0.117176 | 8.4:+23581007 | MS.gene011576:CDS |
| GAGCATTTCTTCATGTATTA+TGG | 0.171606 | 8.4:+23580174 | MS.gene011576:CDS |
| TGCTTGTTGCAGTTGTATTT+TGG | 0.182951 | 8.4:+23581218 | MS.gene011576:intron |
| CTGTTTCAGGGTGCCTCTAT+TGG | 0.219600 | 8.4:+23580423 | MS.gene011576:CDS |
| CTCCCTACACTCGCCTGTTT+TGG | 0.230680 | 8.4:+23580212 | MS.gene011576:CDS |
| TGGCTATTGCTATCGATTCT+AGG | 0.248458 | 8.4:+23580460 | MS.gene011576:CDS |
| CTTCATGTATTATGGAATAT+TGG | 0.281802 | 8.4:+23580182 | MS.gene011576:CDS |
| TATTGGACCCTTGATTGATT+TGG | 0.290110 | 8.4:+23580440 | MS.gene011576:CDS |
| GAGCCCTTTCAATTATTTCT+TGG | 0.299898 | 8.4:-23581277 | None:intergenic |
| CACATTTGTGGCAACTTCCT+TGG | 0.311725 | 8.4:+23580928 | MS.gene011576:CDS |
| AGCCCTTTCAATTATTTCTT+GGG | 0.348111 | 8.4:-23581276 | None:intergenic |
| AAAGAGGTTGTCTTTGTTGA+TGG | 0.349341 | 8.4:+23580392 | MS.gene011576:CDS |
| TGTGCGGATTCTTGTTATAT+TGG | 0.349523 | 8.4:+23581364 | MS.gene011576:CDS |
| AAGGGCTCACTTTGGTGATC+TGG | 0.349673 | 8.4:+23581292 | MS.gene011576:CDS |
| TACTGCGCTCTTTAAGTTTG+AGG | 0.352778 | 8.4:+23581081 | MS.gene011576:CDS |
| TTGGTGGCTTGCTTTCTTCT+GGG | 0.360140 | 8.4:+23581008 | MS.gene011576:CDS |
| GCTATTGCTGCTTCAGCTGT+TGG | 0.373114 | 8.4:+23580152 | MS.gene011576:CDS |
| CCAAATGATGGTTCCAAAAC+AGG | 0.378513 | 8.4:-23580225 | None:intergenic |
| TTGCAGCTAAATCAGTGAAC+AGG | 0.391119 | 8.4:-23581337 | None:intergenic |
| ATGTTTCTCAGCAGCAGCTT+TGG | 0.392700 | 8.4:+23580958 | MS.gene011576:CDS |
| CAGCTTTGGTTGCGAGGCGT+AGG | 0.408062 | 8.4:+23580972 | MS.gene011576:CDS |
| ATGGCTTCCGCTCTGTTTCA+GGG | 0.410687 | 8.4:+23580411 | MS.gene011576:CDS |
| CCACAAATGTGGTAAGGATT+AGG | 0.413130 | 8.4:-23580916 | None:intergenic |
| CTGGGTTGTCTATTCTTATG+TGG | 0.428747 | 8.4:+23581026 | MS.gene011576:CDS |
| CCTAATCCTTACCACATTTG+TGG | 0.443553 | 8.4:+23580916 | MS.gene011576:CDS |
| TAAATTCATACCTCTTCAAA+AGG | 0.443883 | 8.4:-23580263 | None:intergenic |
| TTTGCTTCCTCTGTCTTTGG+TGG | 0.444710 | 8.4:+23581055 | MS.gene011576:CDS |
| CAGCAGCAGCTTTGGTTGCG+AGG | 0.467819 | 8.4:+23580966 | MS.gene011576:CDS |
| CACCCAAGAAATAATTGAAA+GGG | 0.472931 | 8.4:+23581274 | MS.gene011576:CDS |
| AGCAATAGCCAAATCAATCA+AGG | 0.473775 | 8.4:-23580448 | None:intergenic |
| ATCAATCAAGGGTCCAATAG+AGG | 0.481600 | 8.4:-23580436 | None:intergenic |
| TCGTTCAGAATCACATCAAA+CGG | 0.483793 | 8.4:+23580003 | MS.gene011576:CDS |
| TTGATGTGATTCTGAACGAC+GGG | 0.491066 | 8.4:-23579999 | None:intergenic |
| GATTTGACGGAAATTCTTGA+GGG | 0.494951 | 8.4:-23579973 | None:intergenic |
| CTTCTTCCTCTAGAAACCGT+TGG | 0.508479 | 8.4:+23579940 | MS.gene011576:CDS |
| CATGTATTATGGAATATTGG+AGG | 0.514242 | 8.4:+23580185 | MS.gene011576:CDS |
| AGCTTTGGTTGCGAGGCGTA+GGG | 0.525893 | 8.4:+23580973 | MS.gene011576:CDS |
| GTTCCAAAACAGGCGAGTGT+AGG | 0.530322 | 8.4:-23580215 | None:intergenic |
| TTCCAAAACAGGCGAGTGTA+GGG | 0.531799 | 8.4:-23580214 | None:intergenic |
| AGATTTGACGGAAATTCTTG+AGG | 0.543851 | 8.4:-23579974 | None:intergenic |
| CGTTCAGAATCACATCAAAC+GGG | 0.545451 | 8.4:+23580004 | MS.gene011576:CDS |
| ATAATTGAAAGGGCTCACTT+TGG | 0.553243 | 8.4:+23581284 | MS.gene011576:CDS |
| ACACCCAAGAAATAATTGAA+AGG | 0.554681 | 8.4:+23581273 | MS.gene011576:CDS |
| TGTAGATAACAACCAAATGA+TGG | 0.564410 | 8.4:-23580237 | None:intergenic |
| TGAGGGAATCATAATTCCAA+CGG | 0.564853 | 8.4:-23579956 | None:intergenic |
| CAGAAGAAAGCAAGCCACCA+AGG | 0.571791 | 8.4:-23581006 | None:intergenic |
| AAGTTGCCACAAATGTGGTA+AGG | 0.580524 | 8.4:-23580922 | None:intergenic |
| AGGGAGTATCTCTACCTTGG+TGG | 0.580873 | 8.4:+23580992 | MS.gene011576:CDS |
| CGTAGGGAGTATCTCTACCT+TGG | 0.583177 | 8.4:+23580989 | MS.gene011576:CDS |
| ATTCATACCTCTTCAAAAGG+AGG | 0.586956 | 8.4:-23580260 | None:intergenic |
| TGCTGCTGAGAAACATGCAA+AGG | 0.591246 | 8.4:-23580951 | None:intergenic |
| ATAATTCCAACGGTTTCTAG+AGG | 0.597479 | 8.4:-23579946 | None:intergenic |
| TGAGAAACATGCAAAGGCCA+AGG | 0.602323 | 8.4:-23580945 | None:intergenic |
| ATTTAGCTGCAATCTTTGTG+CGG | 0.608553 | 8.4:+23581348 | MS.gene011576:CDS |
| CAAGGAAGTTGCCACAAATG+TGG | 0.618201 | 8.4:-23580927 | None:intergenic |
| AGTAGAACCACCAAAGACAG+AGG | 0.623988 | 8.4:-23581062 | None:intergenic |
| GCAATAGCCAAATCAATCAA+GGG | 0.625293 | 8.4:-23580447 | None:intergenic |
| TTTGATGTGATTCTGAACGA+CGG | 0.630224 | 8.4:-23580000 | None:intergenic |
| TGCAGCTAAATCAGTGAACA+GGG | 0.632060 | 8.4:-23581336 | None:intergenic |
| GATGTGATTCTGAACGACGG+GGG | 0.673838 | 8.4:-23579997 | None:intergenic |
| TGATGTGATTCTGAACGACG+GGG | 0.711262 | 8.4:-23579998 | None:intergenic |
| AGAGGCACCCTGAAACAGAG+CGG | 0.755453 | 8.4:-23580418 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATTGAGTAAATTAAAA+TGG | - | chr8.4:23580803-23580822 | None:intergenic | 15.0% |
| !! | GAAATTGATGAAATTTATGA+AGG | - | chr8.4:23580057-23580076 | None:intergenic | 20.0% |
| !! | TAACTTATGAAAACAGTTTA+TGG | - | chr8.4:23580645-23580664 | None:intergenic | 20.0% |
| !!! | ACTTTTTACGTTTTTTAGTT+TGG | + | chr8.4:23581401-23581420 | MS.gene011576:intron | 20.0% |
| !!! | TTATTGCATTTTGATCATTT+TGG | + | chr8.4:23580532-23580551 | MS.gene011576:intron | 20.0% |
| ! | AATTTATGAGAACAACTTAC+TGG | - | chr8.4:23580720-23580739 | None:intergenic | 25.0% |
| ! | ATGAAAATATTCTTATCCGT+TGG | + | chr8.4:23580095-23580114 | MS.gene011576:intron | 25.0% |
| ! | ATTTAGATATGTTCGATTGA+AGG | - | chr8.4:23580775-23580794 | None:intergenic | 25.0% |
| ! | CTTCATGTATTATGGAATAT+TGG | + | chr8.4:23580182-23580201 | MS.gene011576:CDS | 25.0% |
| ! | TAAATTCATACCTCTTCAAA+AGG | - | chr8.4:23580266-23580285 | None:intergenic | 25.0% |
| ! | TAGTTTGGATTATTCTTTGT+TGG | + | chr8.4:23581416-23581435 | MS.gene011576:intron | 25.0% |
| ! | TATAATTGCTTATCCAAACA+TGG | - | chr8.4:23580572-23580591 | None:intergenic | 25.0% |
| ! | TTGAATAAAACACCTTATTG+AGG | + | chr8.4:23581188-23581207 | MS.gene011576:intron | 25.0% |
| !! | AAAGGCATATAGGATAATAT+AGG | - | chr8.4:23581170-23581189 | None:intergenic | 25.0% |
| !! | ACTGTTTTCATAAGTTATCT+TGG | + | chr8.4:23580648-23580667 | MS.gene011576:intron | 25.0% |
| !!! | ATACTGTTAGTTTTGGATTT+TGG | + | chr8.4:23580859-23580878 | MS.gene011576:intron | 25.0% |
| !!! | ATGTTATGTGGTTTGTTATT+GGG | + | chr8.4:23580319-23580338 | MS.gene011576:intron | 25.0% |
| !!! | CAATAAGGTGTTTTATTCAA+AGG | - | chr8.4:23581188-23581207 | None:intergenic | 25.0% |
| !!! | TATGTTATGTGGTTTGTTAT+TGG | + | chr8.4:23580318-23580337 | MS.gene011576:intron | 25.0% |
| !!! | TCATTTTGGTTTTGAGTTTT+TGG | + | chr8.4:23580546-23580565 | MS.gene011576:intron | 25.0% |
| !!! | TGTTTTATTCAAAGGCATAT+AGG | - | chr8.4:23581180-23581199 | None:intergenic | 25.0% |
| !!! | TTGACTTATACTGTTAGTTT+TGG | + | chr8.4:23580852-23580871 | MS.gene011576:intron | 25.0% |
| AACTAATTGTGAGTCTGTTT+GGG | - | chr8.4:23580745-23580764 | None:intergenic | 30.0% | |
| ACACCCAAGAAATAATTGAA+AGG | + | chr8.4:23581273-23581292 | MS.gene011576:CDS | 30.0% | |
| AGCACTTAAAATTGCAATGA+AGG | - | chr8.4:23580498-23580517 | None:intergenic | 30.0% | |
| ATGCATGTAGTTATGTTATG+TGG | + | chr8.4:23580307-23580326 | MS.gene011576:intron | 30.0% | |
| CACCCAAGAAATAATTGAAA+GGG | + | chr8.4:23581274-23581293 | MS.gene011576:CDS | 30.0% | |
| CATGTATTATGGAATATTGG+AGG | + | chr8.4:23580185-23580204 | MS.gene011576:CDS | 30.0% | |
| GAGCATTTCTTCATGTATTA+TGG | + | chr8.4:23580174-23580193 | MS.gene011576:CDS | 30.0% | |
| TATGTCAATACCAAATCATC+AGG | - | chr8.4:23581443-23581462 | None:intergenic | 30.0% | |
| TGCTACAAACTTAGTGAAAT+TGG | + | chr8.4:23581135-23581154 | MS.gene011576:intron | 30.0% | |
| TGTAGATAACAACCAAATGA+TGG | - | chr8.4:23580240-23580259 | None:intergenic | 30.0% | |
| ! | AGCCCTTTCAATTATTTCTT+GGG | - | chr8.4:23581279-23581298 | None:intergenic | 30.0% |
| ! | TTCTTGTTATATTGGTGAGT+TGG | + | chr8.4:23581372-23581391 | MS.gene011576:intron | 30.0% |
| AAAGAGGTTGTCTTTGTTGA+TGG | + | chr8.4:23580392-23580411 | MS.gene011576:CDS | 35.0% | |
| AACCTGCAATCAATTTCCAA+CGG | - | chr8.4:23580114-23580133 | None:intergenic | 35.0% | |
| AGATTTGACGGAAATTCTTG+AGG | - | chr8.4:23579977-23579996 | None:intergenic | 35.0% | |
| AGCAATAGCCAAATCAATCA+AGG | - | chr8.4:23580451-23580470 | None:intergenic | 35.0% | |
| ATAATTGAAAGGGCTCACTT+TGG | + | chr8.4:23581284-23581303 | MS.gene011576:CDS | 35.0% | |
| ATTCATACCTCTTCAAAAGG+AGG | - | chr8.4:23580263-23580282 | None:intergenic | 35.0% | |
| ATTTAGCTGCAATCTTTGTG+CGG | + | chr8.4:23581348-23581367 | MS.gene011576:CDS | 35.0% | |
| GAACTAATTGTGAGTCTGTT+TGG | - | chr8.4:23580746-23580765 | None:intergenic | 35.0% | |
| GATTTGACGGAAATTCTTGA+GGG | - | chr8.4:23579976-23579995 | None:intergenic | 35.0% | |
| GCAATAGCCAAATCAATCAA+GGG | - | chr8.4:23580450-23580469 | None:intergenic | 35.0% | |
| TATTGGACCCTTGATTGATT+TGG | + | chr8.4:23580440-23580459 | MS.gene011576:CDS | 35.0% | |
| TCGTTCAGAATCACATCAAA+CGG | + | chr8.4:23580003-23580022 | MS.gene011576:CDS | 35.0% | |
| TGAGGGAATCATAATTCCAA+CGG | - | chr8.4:23579959-23579978 | None:intergenic | 35.0% | |
| TTTGATGTGATTCTGAACGA+CGG | - | chr8.4:23580003-23580022 | None:intergenic | 35.0% | |
| ! | ATAATTCCAACGGTTTCTAG+AGG | - | chr8.4:23579949-23579968 | None:intergenic | 35.0% |
| ! | GAGCCCTTTCAATTATTTCT+TGG | - | chr8.4:23581280-23581299 | None:intergenic | 35.0% |
| ! | GTACTTCTTTTCAGCAAAAG+AGG | + | chr8.4:23580376-23580395 | MS.gene011576:intron | 35.0% |
| ! | TGTGCGGATTCTTGTTATAT+TGG | + | chr8.4:23581364-23581383 | MS.gene011576:CDS | 35.0% |
| !! | ATTGGGTTGTTGTGGTATTT+TGG | + | chr8.4:23580336-23580355 | MS.gene011576:intron | 35.0% |
| !! | CTTCTTCCTCTCATTTTTCT+CGG | - | chr8.4:23581500-23581519 | None:intergenic | 35.0% |
| !! | GCTTGTTGCAGTTGTATTTT+GGG | + | chr8.4:23581219-23581238 | MS.gene011576:intron | 35.0% |
| !! | TGCTTGTTGCAGTTGTATTT+TGG | + | chr8.4:23581218-23581237 | MS.gene011576:intron | 35.0% |
| !!! | TTTGAGTTTTTGGCCATGTT+TGG | + | chr8.4:23580556-23580575 | MS.gene011576:intron | 35.0% |
| AAGTTGCCACAAATGTGGTA+AGG | - | chr8.4:23580925-23580944 | None:intergenic | 40.0% | |
| ATCAATCAAGGGTCCAATAG+AGG | - | chr8.4:23580439-23580458 | None:intergenic | 40.0% | |
| ATCCGTTGGAAATTGATTGC+AGG | + | chr8.4:23580109-23580128 | MS.gene011576:intron | 40.0% | |
| ATTCAGCCGAGAAAAATGAG+AGG | + | chr8.4:23581491-23581510 | MS.gene011576:CDS | 40.0% | |
| CCAAATGATGGTTCCAAAAC+AGG | - | chr8.4:23580228-23580247 | None:intergenic | 40.0% | |
| CCACAAATGTGGTAAGGATT+AGG | - | chr8.4:23580919-23580938 | None:intergenic | 40.0% | |
| CCTAATCCTTACCACATTTG+TGG | + | chr8.4:23580916-23580935 | MS.gene011576:CDS | 40.0% | |
| CGTTCAGAATCACATCAAAC+GGG | + | chr8.4:23580004-23580023 | MS.gene011576:CDS | 40.0% | |
| CTGGGTTGTCTATTCTTATG+TGG | + | chr8.4:23581026-23581045 | MS.gene011576:CDS | 40.0% | |
| CTTTGTTGGTCCTGATGATT+TGG | + | chr8.4:23581430-23581449 | MS.gene011576:intron | 40.0% | |
| TGCAGCTAAATCAGTGAACA+GGG | - | chr8.4:23581339-23581358 | None:intergenic | 40.0% | |
| TTGATGTGATTCTGAACGAC+GGG | - | chr8.4:23580002-23580021 | None:intergenic | 40.0% | |
| TTGCAGCTAAATCAGTGAAC+AGG | - | chr8.4:23581340-23581359 | None:intergenic | 40.0% | |
| ! | CATTTTGCTTCCTCTGTCTT+TGG | + | chr8.4:23581052-23581071 | MS.gene011576:CDS | 40.0% |
| ! | TACTGCGCTCTTTAAGTTTG+AGG | + | chr8.4:23581081-23581100 | MS.gene011576:CDS | 40.0% |
| !! | ATCTACACCTCCTTTTGAAG+AGG | + | chr8.4:23580253-23580272 | MS.gene011576:CDS | 40.0% |
| !! | GCAGTTGTATTTTGGGCTTT+TGG | + | chr8.4:23581226-23581245 | MS.gene011576:intron | 40.0% |
| !! | GGTTTGTTATTGGGTTGTTG+TGG | + | chr8.4:23580328-23580347 | MS.gene011576:intron | 40.0% |
| !! | TGGCTATTGCTATCGATTCT+AGG | + | chr8.4:23580460-23580479 | MS.gene011576:CDS | 40.0% |
| !!! | CCTGTTTTGGAACCATCATT+TGG | + | chr8.4:23580225-23580244 | MS.gene011576:CDS | 40.0% |
| !!! | TTTGGGCTTTTGGTGTTTGT+GGG | + | chr8.4:23581236-23581255 | MS.gene011576:CDS | 40.0% |
| !!! | TTTTGGGCTTTTGGTGTTTG+TGG | + | chr8.4:23581235-23581254 | MS.gene011576:CDS | 40.0% |
| AAGCACGCAAGACCTCAATA+AGG | - | chr8.4:23581203-23581222 | None:intergenic | 45.0% | |
| AGTAGAACCACCAAAGACAG+AGG | - | chr8.4:23581065-23581084 | None:intergenic | 45.0% | |
| ATGTTTCTCAGCAGCAGCTT+TGG | + | chr8.4:23580958-23580977 | MS.gene011576:CDS | 45.0% | |
| CAAGGAAGTTGCCACAAATG+TGG | - | chr8.4:23580930-23580949 | None:intergenic | 45.0% | |
| CACATTTGTGGCAACTTCCT+TGG | + | chr8.4:23580928-23580947 | MS.gene011576:CDS | 45.0% | |
| TGAGAAACATGCAAAGGCCA+AGG | - | chr8.4:23580948-23580967 | None:intergenic | 45.0% | |
| TGATGTGATTCTGAACGACG+GGG | - | chr8.4:23580001-23580020 | None:intergenic | 45.0% | |
| TGCTGCTGAGAAACATGCAA+AGG | - | chr8.4:23580954-23580973 | None:intergenic | 45.0% | |
| TTCCAAAACAGGCGAGTGTA+GGG | - | chr8.4:23580217-23580236 | None:intergenic | 45.0% | |
| TTTGCTTCCTCTGTCTTTGG+TGG | + | chr8.4:23581055-23581074 | MS.gene011576:CDS | 45.0% | |
| ! | CTTCTTCCTCTAGAAACCGT+TGG | + | chr8.4:23579940-23579959 | MS.gene011576:CDS | 45.0% |
| !! | TTGGTGGCTTGCTTTCTTCT+GGG | + | chr8.4:23581008-23581027 | MS.gene011576:CDS | 45.0% |
| ATGGCTTCCGCTCTGTTTCA+GGG | + | chr8.4:23580411-23580430 | MS.gene011576:CDS | 50.0% | |
| CAGAAGAAAGCAAGCCACCA+AGG | - | chr8.4:23581009-23581028 | None:intergenic | 50.0% | |
| GATGTGATTCTGAACGACGG+GGG | - | chr8.4:23580000-23580019 | None:intergenic | 50.0% | |
| GTTCCAAAACAGGCGAGTGT+AGG | - | chr8.4:23580218-23580237 | None:intergenic | 50.0% | |
| ! | AAGGGCTCACTTTGGTGATC+TGG | + | chr8.4:23581292-23581311 | MS.gene011576:CDS | 50.0% |
| ! | CTGTTTCAGGGTGCCTCTAT+TGG | + | chr8.4:23580423-23580442 | MS.gene011576:CDS | 50.0% |
| ! | GCTATTGCTGCTTCAGCTGT+TGG | + | chr8.4:23580152-23580171 | MS.gene011576:CDS | 50.0% |
| !! | AGGGAGTATCTCTACCTTGG+TGG | + | chr8.4:23580992-23581011 | MS.gene011576:CDS | 50.0% |
| !! | CGTAGGGAGTATCTCTACCT+TGG | + | chr8.4:23580989-23581008 | MS.gene011576:CDS | 50.0% |
| !! | CTTGGTGGCTTGCTTTCTTC+TGG | + | chr8.4:23581007-23581026 | MS.gene011576:CDS | 50.0% |
| GAACGACGGGGGAGATTTGA+CGG | - | chr8.4:23579989-23580008 | None:intergenic | 55.0% | |
| GATGGCTTCCGCTCTGTTTC+AGG | + | chr8.4:23580410-23580429 | MS.gene011576:CDS | 55.0% | |
| ! | AGCTTTGGTTGCGAGGCGTA+GGG | + | chr8.4:23580973-23580992 | MS.gene011576:CDS | 55.0% |
| ! | CTCCCTACACTCGCCTGTTT+TGG | + | chr8.4:23580212-23580231 | MS.gene011576:CDS | 55.0% |
| !! | AGAGGCACCCTGAAACAGAG+CGG | - | chr8.4:23580421-23580440 | None:intergenic | 55.0% |
| ! | CAGCAGCAGCTTTGGTTGCG+AGG | + | chr8.4:23580966-23580985 | MS.gene011576:CDS | 60.0% |
| ! | CAGCTTTGGTTGCGAGGCGT+AGG | + | chr8.4:23580972-23580991 | MS.gene011576:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23579906 | 23581534 | 23579906 | ID=MS.gene011576 |
| chr8.4 | mRNA | 23579906 | 23581534 | 23579906 | ID=MS.gene011576.t1;Parent=MS.gene011576 |
| chr8.4 | exon | 23579906 | 23580025 | 23579906 | ID=MS.gene011576.t1.exon1;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23579906 | 23580025 | 23579906 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| chr8.4 | exon | 23580131 | 23580274 | 23580131 | ID=MS.gene011576.t1.exon2;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23580131 | 23580274 | 23580131 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| chr8.4 | exon | 23580390 | 23580481 | 23580390 | ID=MS.gene011576.t1.exon3;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23580390 | 23580481 | 23580390 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| chr8.4 | exon | 23580916 | 23581102 | 23580916 | ID=MS.gene011576.t1.exon4;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23580916 | 23581102 | 23580916 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| chr8.4 | exon | 23581230 | 23581385 | 23581230 | ID=MS.gene011576.t1.exon5;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23581230 | 23581385 | 23581230 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| chr8.4 | exon | 23581484 | 23581534 | 23581484 | ID=MS.gene011576.t1.exon6;Parent=MS.gene011576.t1 |
| chr8.4 | CDS | 23581484 | 23581534 | 23581484 | ID=cds.MS.gene011576.t1;Parent=MS.gene011576.t1 |
| Gene Sequence |
| Protein sequence |
