Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011617.t1 | XP_013457552.1 | 84.1 | 353 | 33 | 5 | 1 | 352 | 1 | 331 | 7.50E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011617.t1 | Q9FHE4 | 34.0 | 203 | 128 | 2 | 152 | 352 | 95 | 293 | 1.3e-18 | 95.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011617.t1 | A0A072UR88 | 84.1 | 353 | 33 | 5 | 1 | 352 | 1 | 331 | 5.4e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015349 | MS.gene011617 | PPI |
| MS.gene09692 | MS.gene011617 | PPI |
| MS.gene54205 | MS.gene011617 | PPI |
| MS.gene21505 | MS.gene011617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011617.t1 | MTR_4g099060 | 88.669 | 353 | 17 | 7 | 1 | 352 | 1 | 331 | 0.0 | 513 |
| MS.gene011617.t1 | MTR_4g099060 | 90.378 | 291 | 15 | 5 | 63 | 352 | 8 | 286 | 2.55e-160 | 450 |
| MS.gene011617.t1 | MTR_5g013690 | 56.164 | 365 | 117 | 10 | 1 | 352 | 1 | 335 | 8.61e-111 | 326 |
| MS.gene011617.t1 | MTR_5g013690 | 59.091 | 286 | 93 | 5 | 74 | 352 | 4 | 272 | 7.27e-96 | 286 |
| MS.gene011617.t1 | MTR_1g019250 | 31.034 | 261 | 152 | 4 | 94 | 351 | 105 | 340 | 1.35e-30 | 119 |
| MS.gene011617.t1 | MTR_4g083540 | 31.604 | 212 | 137 | 3 | 143 | 352 | 88 | 293 | 8.07e-29 | 113 |
| MS.gene011617.t1 | MTR_2g069350 | 30.739 | 257 | 138 | 6 | 133 | 352 | 113 | 366 | 1.60e-28 | 114 |
| MS.gene011617.t1 | MTR_3g117970 | 33.862 | 189 | 98 | 5 | 165 | 351 | 32 | 195 | 1.48e-25 | 102 |
| MS.gene011617.t1 | MTR_4g036485 | 29.082 | 196 | 125 | 3 | 156 | 350 | 28 | 210 | 2.10e-25 | 102 |
| MS.gene011617.t1 | MTR_2g028830 | 29.851 | 201 | 129 | 3 | 159 | 352 | 124 | 319 | 1.55e-22 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011617.t1 | AT1G32740 | 41.873 | 363 | 147 | 10 | 1 | 351 | 1 | 311 | 1.03e-74 | 233 |
| MS.gene011617.t1 | AT1G32740 | 41.279 | 344 | 142 | 8 | 19 | 351 | 6 | 300 | 1.61e-70 | 222 |
| MS.gene011617.t1 | AT4G17680 | 40.166 | 361 | 142 | 10 | 1 | 351 | 18 | 314 | 9.99e-70 | 221 |
| MS.gene011617.t1 | AT5G47050 | 42.466 | 365 | 132 | 12 | 1 | 352 | 1 | 300 | 7.77e-69 | 218 |
| MS.gene011617.t1 | AT1G32740 | 42.000 | 300 | 124 | 5 | 63 | 351 | 7 | 267 | 2.69e-65 | 208 |
| MS.gene011617.t1 | AT1G32740 | 42.000 | 300 | 124 | 5 | 63 | 351 | 7 | 267 | 2.69e-65 | 208 |
| MS.gene011617.t1 | AT4G17680 | 42.599 | 277 | 109 | 6 | 85 | 351 | 6 | 242 | 6.74e-60 | 193 |
| MS.gene011617.t1 | AT4G17680 | 47.340 | 188 | 79 | 4 | 174 | 351 | 13 | 190 | 9.78e-46 | 155 |
| MS.gene011617.t1 | AT1G10650 | 29.773 | 309 | 163 | 9 | 67 | 352 | 6 | 283 | 3.46e-38 | 138 |
| MS.gene011617.t1 | AT1G10650 | 30.667 | 300 | 172 | 9 | 67 | 352 | 62 | 339 | 4.18e-38 | 139 |
| MS.gene011617.t1 | AT1G60610 | 28.627 | 255 | 160 | 2 | 103 | 351 | 101 | 339 | 4.87e-35 | 131 |
| MS.gene011617.t1 | AT1G60610 | 28.627 | 255 | 160 | 2 | 103 | 351 | 101 | 339 | 4.87e-35 | 131 |
| MS.gene011617.t1 | AT1G60610 | 28.627 | 255 | 160 | 2 | 103 | 351 | 101 | 339 | 4.87e-35 | 131 |
| MS.gene011617.t1 | AT1G60610 | 28.627 | 255 | 160 | 2 | 103 | 351 | 101 | 339 | 4.87e-35 | 131 |
| MS.gene011617.t1 | AT1G60610 | 28.627 | 255 | 160 | 2 | 103 | 351 | 101 | 339 | 4.87e-35 | 131 |
| MS.gene011617.t1 | AT5G45100 | 35.122 | 205 | 127 | 3 | 150 | 352 | 66 | 266 | 8.84e-29 | 112 |
| MS.gene011617.t1 | AT5G45100 | 35.122 | 205 | 127 | 3 | 150 | 352 | 93 | 293 | 1.03e-28 | 113 |
| MS.gene011617.t1 | AT1G45976 | 27.907 | 258 | 157 | 3 | 94 | 351 | 97 | 325 | 3.15e-28 | 112 |
| MS.gene011617.t1 | AT4G19700 | 34.928 | 209 | 129 | 4 | 147 | 352 | 99 | 303 | 8.07e-28 | 110 |
| MS.gene011617.t1 | AT4G35070 | 32.663 | 199 | 120 | 5 | 159 | 351 | 74 | 264 | 2.44e-27 | 108 |
| MS.gene011617.t1 | AT4G35070 | 32.663 | 199 | 120 | 5 | 159 | 351 | 19 | 209 | 7.79e-27 | 105 |
| MS.gene011617.t1 | AT3G12920 | 27.830 | 212 | 138 | 3 | 154 | 352 | 125 | 334 | 6.04e-25 | 103 |
| MS.gene011617.t1 | AT1G79110 | 29.245 | 212 | 130 | 3 | 159 | 352 | 123 | 332 | 1.36e-24 | 102 |
| MS.gene011617.t1 | AT1G79110 | 29.245 | 212 | 130 | 3 | 159 | 352 | 145 | 354 | 1.46e-24 | 103 |
| MS.gene011617.t1 | AT1G79110 | 29.302 | 215 | 129 | 4 | 159 | 352 | 145 | 357 | 2.43e-23 | 99.8 |
Find 83 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGCTTCCATGGTTAAC+TGG | 0.184505 | 8.1:-23390355 | None:intergenic |
| GAGAAGCTGCGGCGGCTTCT+TGG | 0.211237 | 8.1:-23390400 | None:intergenic |
| GACTTCAACGGTTGAATTCT+TGG | 0.271030 | 8.1:-23390690 | None:intergenic |
| TTCTTCTAAACAACAATAAC+AGG | 0.299401 | 8.1:+23389374 | MS.gene011617:CDS |
| AGAAGCTGCGGCGGCTTCTT+GGG | 0.312290 | 8.1:-23390399 | None:intergenic |
| CTGCGGCGGCTTCTTGGGCC+CGG | 0.322779 | 8.1:-23390394 | None:intergenic |
| GTTGTTGTTGTTGAGATTGT+TGG | 0.334601 | 8.1:-23389935 | None:intergenic |
| TTTAGAAGAAGAATATTTGA+TGG | 0.355647 | 8.1:-23389361 | None:intergenic |
| GCAACTTCCACCACTCTATC+AGG | 0.376811 | 8.1:-23390539 | None:intergenic |
| CAACAACCATCAGGAGCATT+AGG | 0.380479 | 8.1:+23389549 | MS.gene011617:CDS |
| TGCGGCGGCTTCTTGGGCCC+GGG | 0.389790 | 8.1:-23390393 | None:intergenic |
| TTACCTGGGTTTGAAGATAT+TGG | 0.390243 | 8.1:-23390058 | None:intergenic |
| CCACTTCTTTCTCTCTTAAC+CGG | 0.391453 | 8.1:-23390283 | None:intergenic |
| GTTGTTGATGATGATGATTA+TGG | 0.394349 | 8.1:-23389833 | None:intergenic |
| CTGCCATACTTGGGCTTCCA+TGG | 0.410747 | 8.1:-23390363 | None:intergenic |
| TAACCATGGAAGCCCAAGTA+TGG | 0.415275 | 8.1:+23390360 | MS.gene011617:CDS |
| GAGAAATGATTAATAACGTT+AGG | 0.416596 | 8.1:-23389768 | None:intergenic |
| GGCGAAGATGCCGGCGGAGG+CGG | 0.418507 | 8.1:+23390461 | MS.gene011617:CDS |
| TTCTTGGGAGTAAAGCAAAC+AGG | 0.420487 | 8.1:-23390674 | None:intergenic |
| GCATGAAACGCCGCCTCCGC+CGG | 0.421324 | 8.1:-23390471 | None:intergenic |
| GTGGAAGTTGCGGCGGCGCG+TGG | 0.427360 | 8.1:+23390551 | MS.gene011617:CDS |
| ACTTCAACGGTTGAATTCTT+GGG | 0.428768 | 8.1:-23390689 | None:intergenic |
| CCGCCGCGTTTAGTAGTTCC+CGG | 0.431757 | 8.1:-23390244 | None:intergenic |
| AGAAATGATTAATAACGTTA+GGG | 0.438438 | 8.1:-23389767 | None:intergenic |
| GCCTCCGCCGGCATCTTCGC+CGG | 0.446322 | 8.1:-23390459 | None:intergenic |
| ACAAGCTGAGGATGCTGAAT+CGG | 0.449705 | 8.1:+23390505 | MS.gene011617:CDS |
| CGGAGGAAGCGGTGGCGCAC+CGG | 0.460350 | 8.1:+23390264 | MS.gene011617:CDS |
| CAACAAAATGTTGTCTCTAC+TGG | 0.461189 | 8.1:+23389852 | MS.gene011617:CDS |
| AAGTATGGCAGGCAAAAGCC+CGG | 0.473882 | 8.1:+23390375 | MS.gene011617:CDS |
| TGAATAATTTGAGAAGGTTG+AGG | 0.479716 | 8.1:-23389798 | None:intergenic |
| ACCGGCGAAGATGCCGGCGG+AGG | 0.485312 | 8.1:+23390458 | MS.gene011617:CDS |
| GGCGTTTCATGCGGCGTGGA+AGG | 0.505182 | 8.1:+23390482 | MS.gene011617:CDS |
| AACAGCAGAAATGGACAAGA+AGG | 0.511556 | 8.1:+23389501 | MS.gene011617:intron |
| TCTCAAACCGGCGAAGATGC+CGG | 0.511840 | 8.1:+23390452 | MS.gene011617:CDS |
| ACTAAACGCGGCGGAGGAAG+CGG | 0.514263 | 8.1:+23390253 | MS.gene011617:CDS |
| TTGGGCTTCCATGGTTAACT+GGG | 0.521256 | 8.1:-23390354 | None:intergenic |
| GGCGGAGGCGGCGTTTCATG+CGG | 0.524962 | 8.1:+23390473 | MS.gene011617:CDS |
| GAAAGATGAATAATTTGAGA+AGG | 0.525108 | 8.1:-23389804 | None:intergenic |
| GCGGCGCGTGGGAAATGTAG+AGG | 0.525683 | 8.1:+23390563 | MS.gene011617:CDS |
| TTGTGTTGTTATTGTTGCAT+AGG | 0.525698 | 8.1:-23389611 | None:intergenic |
| GAATCTACGGCGGACATTGG+CGG | 0.530434 | 8.1:+23390202 | MS.gene011617:CDS |
| GTGTGAGAAGCGCGTGGCAA+CGG | 0.531560 | 8.1:+23390586 | MS.gene011617:CDS |
| TAAATCCGCTTTCCTGCGAG+TGG | 0.534279 | 8.1:-23390318 | None:intergenic |
| CATGGAAGCCCAAGTATGGC+AGG | 0.538619 | 8.1:+23390364 | MS.gene011617:CDS |
| GGCGGACATTGGCGGAGAAG+AGG | 0.541874 | 8.1:+23390210 | MS.gene011617:CDS |
| TCTCGCAAGAGAGGAAGAGA+AGG | 0.542174 | 8.1:+23389738 | MS.gene011617:CDS |
| AGCGGATTTAGAAGCGCGTA+CGG | 0.545296 | 8.1:+23390331 | MS.gene011617:CDS |
| AGAGAATCTACGGCGGACAT+TGG | 0.549805 | 8.1:+23390199 | MS.gene011617:CDS |
| TGGAAGTTGCGGCGGCGCGT+GGG | 0.555769 | 8.1:+23390552 | MS.gene011617:CDS |
| TGATAGAGTGGTGGAAGTTG+CGG | 0.565112 | 8.1:+23390541 | MS.gene011617:CDS |
| TGAGAAGCGCGTGGCAACGG+TGG | 0.570009 | 8.1:+23390589 | MS.gene011617:CDS |
| TATTTCAGGGAGAGAATCTA+CGG | 0.574428 | 8.1:+23390189 | MS.gene011617:intron |
| AATTCGCAAAAGCCACTCGC+AGG | 0.581927 | 8.1:+23390306 | MS.gene011617:CDS |
| CTGGGCTTGTAGAGAAGCTG+CGG | 0.587298 | 8.1:-23390411 | None:intergenic |
| CGGCGCGTGGGAAATGTAGA+GGG | 0.594790 | 8.1:+23390564 | MS.gene011617:CDS |
| TTCTCTTCTCTATTACCACA+AGG | 0.597651 | 8.1:+23389996 | MS.gene011617:CDS |
| AAAAGCCACTCGCAGGAAAG+CGG | 0.601571 | 8.1:+23390313 | MS.gene011617:CDS |
| CAAACACACAAATGCCGACA+AGG | 0.601757 | 8.1:-23390620 | None:intergenic |
| GGCTTGTAGAGAAGCTGCGG+CGG | 0.603377 | 8.1:-23390408 | None:intergenic |
| GGAACTACTAAACGCGGCGG+AGG | 0.603933 | 8.1:+23390247 | MS.gene011617:CDS |
| AGTATGGCAGGCAAAAGCCC+GGG | 0.608050 | 8.1:+23390376 | MS.gene011617:CDS |
| AAACGCGGCGGAGGAAGCGG+TGG | 0.615069 | 8.1:+23390256 | MS.gene011617:CDS |
| GGTACAAATTCTCGCAAGAG+AGG | 0.618293 | 8.1:+23389729 | MS.gene011617:intron |
| AGGCGGCGTTTCATGCGGCG+TGG | 0.622888 | 8.1:+23390478 | MS.gene011617:CDS |
| TTATATTGATCCTGATAGAG+TGG | 0.624363 | 8.1:+23390529 | MS.gene011617:CDS |
| GATAGTCCTAATGCTCCTGA+TGG | 0.626296 | 8.1:-23389555 | None:intergenic |
| ATTTGAGAAACAATTCCTTG+TGG | 0.628054 | 8.1:-23390011 | None:intergenic |
| CTAAGAGAGAAAGACTTCAA+CGG | 0.634503 | 8.1:-23390702 | None:intergenic |
| CGGCGTGGAAGGACAAGCTG+AGG | 0.634766 | 8.1:+23390493 | MS.gene011617:CDS |
| GAAATGATTAATAACGTTAG+GGG | 0.644550 | 8.1:-23389766 | None:intergenic |
| ACAGCAGAAATGGACAAGAA+GGG | 0.646393 | 8.1:+23389502 | MS.gene011617:intron |
| TAGAGTGGTGGAAGTTGCGG+CGG | 0.650672 | 8.1:+23390544 | MS.gene011617:CDS |
| TATTGATCCTGATAGAGTGG+TGG | 0.652755 | 8.1:+23390532 | MS.gene011617:CDS |
| CCGGTTAAGAGAGAAAGAAG+TGG | 0.657511 | 8.1:+23390283 | MS.gene011617:CDS |
| TCTTGGGAGTAAAGCAAACA+GGG | 0.657653 | 8.1:-23390673 | None:intergenic |
| AGACCAATATCTTCAAACCC+AGG | 0.667723 | 8.1:+23390055 | MS.gene011617:CDS |
| GATCATCGAATGATAAACGA+AGG | 0.668352 | 8.1:-23389875 | None:intergenic |
| TAGAGGGTGTGAGAAGCGCG+TGG | 0.693712 | 8.1:+23390580 | MS.gene011617:CDS |
| GCGTACGGCCCAGTTAACCA+TGG | 0.703157 | 8.1:+23390346 | MS.gene011617:CDS |
| CAAACCGGCGAAGATGCCGG+CGG | 0.709631 | 8.1:+23390455 | MS.gene011617:CDS |
| TTACCGGGAACTACTAAACG+CGG | 0.740598 | 8.1:+23390241 | MS.gene011617:CDS |
| TTCAGGGAGAGAATCTACGG+CGG | 0.769377 | 8.1:+23390192 | MS.gene011617:intron |
| CCGGGAACTACTAAACGCGG+CGG | 0.776946 | 8.1:+23390244 | MS.gene011617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCGATTTATTAGAAAT+TGG | + | chr8.1:23390128-23390147 | MS.gene011617:intron | 15.0% |
| !! | AGAAATGATTAATAACGTTA+GGG | - | chr8.1:23389770-23389789 | None:intergenic | 20.0% |
| !! | TCATATAGAATTGTATTTGA+GGG | - | chr8.1:23389438-23389457 | None:intergenic | 20.0% |
| !! | TTATTAGAAATTGGATAGAA+AGG | + | chr8.1:23390137-23390156 | MS.gene011617:intron | 20.0% |
| !! | TTTAGAAGAAGAATATTTGA+TGG | - | chr8.1:23389364-23389383 | None:intergenic | 20.0% |
| ! | CAAAAAATAATGTCTCAAAC+CGG | + | chr8.1:23390440-23390459 | MS.gene011617:CDS | 25.0% |
| ! | GAAAGATGAATAATTTGAGA+AGG | - | chr8.1:23389807-23389826 | None:intergenic | 25.0% |
| ! | GAAATGATTAATAACGTTAG+GGG | - | chr8.1:23389769-23389788 | None:intergenic | 25.0% |
| ! | GAACAAGAAAAGAGATTAAT+TGG | - | chr8.1:23389474-23389493 | None:intergenic | 25.0% |
| ! | GAGAAATGATTAATAACGTT+AGG | - | chr8.1:23389771-23389790 | None:intergenic | 25.0% |
| ! | GTCATATAGAATTGTATTTG+AGG | - | chr8.1:23389439-23389458 | None:intergenic | 25.0% |
| ! | TTCTTCTAAACAACAATAAC+AGG | + | chr8.1:23389374-23389393 | MS.gene011617:CDS | 25.0% |
| !! | TTTGAATTTTTATGCGTGAT+GGG | + | chr8.1:23390166-23390185 | MS.gene011617:intron | 25.0% |
| !! | TTTTGAATTTTTATGCGTGA+TGG | + | chr8.1:23390165-23390184 | MS.gene011617:intron | 25.0% |
| !!! | TTGTTTTGTTTTGTTTACCT+GGG | - | chr8.1:23390075-23390094 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTGTTTACC+TGG | - | chr8.1:23390076-23390095 | None:intergenic | 25.0% |
| ATTTGAGAAACAATTCCTTG+TGG | - | chr8.1:23390014-23390033 | None:intergenic | 30.0% | |
| TGAATAATTTGAGAAGGTTG+AGG | - | chr8.1:23389801-23389820 | None:intergenic | 30.0% | |
| TTATATTGATCCTGATAGAG+TGG | + | chr8.1:23390529-23390548 | MS.gene011617:CDS | 30.0% | |
| ! | TTGTGTTGTTATTGTTGCAT+AGG | - | chr8.1:23389614-23389633 | None:intergenic | 30.0% |
| !! | GTTGTTGATGATGATGATTA+TGG | - | chr8.1:23389836-23389855 | None:intergenic | 30.0% |
| !!! | ACATTATTTTTTGTTGCAGC+TGG | - | chr8.1:23390433-23390452 | None:intergenic | 30.0% |
| !!! | CATTATTTTTTGTTGCAGCT+GGG | - | chr8.1:23390432-23390451 | None:intergenic | 30.0% |
| ACTTCAACGGTTGAATTCTT+GGG | - | chr8.1:23390692-23390711 | None:intergenic | 35.0% | |
| AGAAGAGGCAAAAACATTAC+CGG | + | chr8.1:23390225-23390244 | MS.gene011617:CDS | 35.0% | |
| CAACAAAATGTTGTCTCTAC+TGG | + | chr8.1:23389852-23389871 | MS.gene011617:CDS | 35.0% | |
| CAACAACAACAACAACAACA+AGG | + | chr8.1:23389945-23389964 | MS.gene011617:CDS | 35.0% | |
| CTAAGAGAGAAAGACTTCAA+CGG | - | chr8.1:23390705-23390724 | None:intergenic | 35.0% | |
| GATCATCGAATGATAAACGA+AGG | - | chr8.1:23389878-23389897 | None:intergenic | 35.0% | |
| TATTTCAGGGAGAGAATCTA+CGG | + | chr8.1:23390189-23390208 | MS.gene011617:intron | 35.0% | |
| TTACCTGGGTTTGAAGATAT+TGG | - | chr8.1:23390061-23390080 | None:intergenic | 35.0% | |
| TTCTCTTCTCTATTACCACA+AGG | + | chr8.1:23389996-23390015 | MS.gene011617:CDS | 35.0% | |
| ! | GTTGTTGTTGTTGAGATTGT+TGG | - | chr8.1:23389938-23389957 | None:intergenic | 35.0% |
| ! | TCTTTTCCTAACAGCAGAAA+TGG | + | chr8.1:23389492-23389511 | MS.gene011617:intron | 35.0% |
| AACAGCAGAAATGGACAAGA+AGG | + | chr8.1:23389501-23389520 | MS.gene011617:intron | 40.0% | |
| ACAGCAGAAATGGACAAGAA+GGG | + | chr8.1:23389502-23389521 | MS.gene011617:intron | 40.0% | |
| AGACCAATATCTTCAAACCC+AGG | + | chr8.1:23390055-23390074 | MS.gene011617:CDS | 40.0% | |
| CAACAACAACAACAACCATC+AGG | + | chr8.1:23389540-23389559 | MS.gene011617:CDS | 40.0% | |
| CCACTTCTTTCTCTCTTAAC+CGG | - | chr8.1:23390286-23390305 | None:intergenic | 40.0% | |
| GAAGAGGCAAAAACATTACC+GGG | + | chr8.1:23390226-23390245 | MS.gene011617:CDS | 40.0% | |
| GACTTCAACGGTTGAATTCT+TGG | - | chr8.1:23390693-23390712 | None:intergenic | 40.0% | |
| TATTGATCCTGATAGAGTGG+TGG | + | chr8.1:23390532-23390551 | MS.gene011617:CDS | 40.0% | |
| TCTTGGGAGTAAAGCAAACA+GGG | - | chr8.1:23390676-23390695 | None:intergenic | 40.0% | |
| TCTTGTCCATTTCTGCTGTT+AGG | - | chr8.1:23389501-23389520 | None:intergenic | 40.0% | |
| TTCTTGGGAGTAAAGCAAAC+AGG | - | chr8.1:23390677-23390696 | None:intergenic | 40.0% | |
| !! | TATGCGTGATGGGTATTTCA+GGG | + | chr8.1:23390176-23390195 | MS.gene011617:intron | 40.0% |
| !! | TTATGCGTGATGGGTATTTC+AGG | + | chr8.1:23390175-23390194 | MS.gene011617:intron | 40.0% |
| ACAAGCTGAGGATGCTGAAT+CGG | + | chr8.1:23390505-23390524 | MS.gene011617:CDS | 45.0% | |
| CAAACACACAAATGCCGACA+AGG | - | chr8.1:23390623-23390642 | None:intergenic | 45.0% | |
| CCGGTTAAGAGAGAAAGAAG+TGG | + | chr8.1:23390283-23390302 | MS.gene011617:CDS | 45.0% | |
| CTTGCGAGAATTTGTACCTG+CGG | - | chr8.1:23389727-23389746 | None:intergenic | 45.0% | |
| GATAGTCCTAATGCTCCTGA+TGG | - | chr8.1:23389558-23389577 | None:intergenic | 45.0% | |
| GGTACAAATTCTCGCAAGAG+AGG | + | chr8.1:23389729-23389748 | MS.gene011617:intron | 45.0% | |
| TAACCATGGAAGCCCAAGTA+TGG | + | chr8.1:23390360-23390379 | MS.gene011617:CDS | 45.0% | |
| TTACCGGGAACTACTAAACG+CGG | + | chr8.1:23390241-23390260 | MS.gene011617:CDS | 45.0% | |
| TTGGGCTTCCATGGTTAACT+GGG | - | chr8.1:23390357-23390376 | None:intergenic | 45.0% | |
| ! | TGATAGAGTGGTGGAAGTTG+CGG | + | chr8.1:23390541-23390560 | MS.gene011617:CDS | 45.0% |
| !! | CAACAACCATCAGGAGCATT+AGG | + | chr8.1:23389549-23389568 | MS.gene011617:CDS | 45.0% |
| !! | CGGTGGTTGTTTTACCTTGT+CGG | + | chr8.1:23390606-23390625 | MS.gene011617:CDS | 45.0% |
| AAAAGCCACTCGCAGGAAAG+CGG | + | chr8.1:23390313-23390332 | MS.gene011617:CDS | 50.0% | |
| AAGTATGGCAGGCAAAAGCC+CGG | + | chr8.1:23390375-23390394 | MS.gene011617:CDS | 50.0% | |
| AATTCGCAAAAGCCACTCGC+AGG | + | chr8.1:23390306-23390325 | MS.gene011617:CDS | 50.0% | |
| AGAGAATCTACGGCGGACAT+TGG | + | chr8.1:23390199-23390218 | MS.gene011617:CDS | 50.0% | |
| ATGTCTCAACAACTCACCGC+AGG | + | chr8.1:23389708-23389727 | MS.gene011617:intron | 50.0% | |
| CTTGGGCTTCCATGGTTAAC+TGG | - | chr8.1:23390358-23390377 | None:intergenic | 50.0% | |
| GCAACTTCCACCACTCTATC+AGG | - | chr8.1:23390542-23390561 | None:intergenic | 50.0% | |
| TAAATCCGCTTTCCTGCGAG+TGG | - | chr8.1:23390321-23390340 | None:intergenic | 50.0% | |
| TCTCGCAAGAGAGGAAGAGA+AGG | + | chr8.1:23389738-23389757 | MS.gene011617:CDS | 50.0% | |
| TTCAGGGAGAGAATCTACGG+CGG | + | chr8.1:23390192-23390211 | MS.gene011617:intron | 50.0% | |
| ! | AGCGGATTTAGAAGCGCGTA+CGG | + | chr8.1:23390331-23390350 | MS.gene011617:CDS | 50.0% |
| ! | GGCTTTTGCCTGCCATACTT+GGG | - | chr8.1:23390375-23390394 | None:intergenic | 50.0% |
| AGTATGGCAGGCAAAAGCCC+GGG | + | chr8.1:23390376-23390395 | MS.gene011617:CDS | 55.0% | |
| CATGGAAGCCCAAGTATGGC+AGG | + | chr8.1:23390364-23390383 | MS.gene011617:CDS | 55.0% | |
| CTGCCATACTTGGGCTTCCA+TGG | - | chr8.1:23390366-23390385 | None:intergenic | 55.0% | |
| CTGGGCTTGTAGAGAAGCTG+CGG | - | chr8.1:23390414-23390433 | None:intergenic | 55.0% | |
| GAATCTACGGCGGACATTGG+CGG | + | chr8.1:23390202-23390221 | MS.gene011617:CDS | 55.0% | |
| TCTCAAACCGGCGAAGATGC+CGG | + | chr8.1:23390452-23390471 | MS.gene011617:CDS | 55.0% | |
| ! | GGGCTTTTGCCTGCCATACT+TGG | - | chr8.1:23390376-23390395 | None:intergenic | 55.0% |
| ! | TAGAGTGGTGGAAGTTGCGG+CGG | + | chr8.1:23390544-23390563 | MS.gene011617:CDS | 55.0% |
| ACTAAACGCGGCGGAGGAAG+CGG | + | chr8.1:23390253-23390272 | MS.gene011617:CDS | 60.0% | |
| AGAAGCTGCGGCGGCTTCTT+GGG | - | chr8.1:23390402-23390421 | None:intergenic | 60.0% | |
| CCGCCGCGTTTAGTAGTTCC+CGG | - | chr8.1:23390247-23390266 | None:intergenic | 60.0% | |
| CCGGGAACTACTAAACGCGG+CGG | + | chr8.1:23390244-23390263 | MS.gene011617:CDS | 60.0% | |
| CGGCGCGTGGGAAATGTAGA+GGG | + | chr8.1:23390564-23390583 | MS.gene011617:CDS | 60.0% | |
| GCGTACGGCCCAGTTAACCA+TGG | + | chr8.1:23390346-23390365 | MS.gene011617:CDS | 60.0% | |
| GGAACTACTAAACGCGGCGG+AGG | + | chr8.1:23390247-23390266 | MS.gene011617:CDS | 60.0% | |
| GGCTTGTAGAGAAGCTGCGG+CGG | - | chr8.1:23390411-23390430 | None:intergenic | 60.0% | |
| ! | GTGTGAGAAGCGCGTGGCAA+CGG | + | chr8.1:23390586-23390605 | MS.gene011617:CDS | 60.0% |
| ! | TAGAGGGTGTGAGAAGCGCG+TGG | + | chr8.1:23390580-23390599 | MS.gene011617:CDS | 60.0% |
| CAAACCGGCGAAGATGCCGG+CGG | + | chr8.1:23390455-23390474 | MS.gene011617:CDS | 65.0% | |
| CGGCGTGGAAGGACAAGCTG+AGG | + | chr8.1:23390493-23390512 | MS.gene011617:CDS | 65.0% | |
| GAGAAGCTGCGGCGGCTTCT+TGG | - | chr8.1:23390403-23390422 | None:intergenic | 65.0% | |
| GCGGCGCGTGGGAAATGTAG+AGG | + | chr8.1:23390563-23390582 | MS.gene011617:CDS | 65.0% | |
| GGCGGACATTGGCGGAGAAG+AGG | + | chr8.1:23390210-23390229 | MS.gene011617:CDS | 65.0% | |
| GGCGTTTCATGCGGCGTGGA+AGG | + | chr8.1:23390482-23390501 | MS.gene011617:CDS | 65.0% | |
| ! | TGAGAAGCGCGTGGCAACGG+TGG | + | chr8.1:23390589-23390608 | MS.gene011617:CDS | 65.0% |
| AAACGCGGCGGAGGAAGCGG+TGG | + | chr8.1:23390256-23390275 | MS.gene011617:CDS | 70.0% | |
| AGGCGGCGTTTCATGCGGCG+TGG | + | chr8.1:23390478-23390497 | MS.gene011617:CDS | 70.0% | |
| GCATGAAACGCCGCCTCCGC+CGG | - | chr8.1:23390474-23390493 | None:intergenic | 70.0% | |
| GGCGGAGGCGGCGTTTCATG+CGG | + | chr8.1:23390473-23390492 | MS.gene011617:CDS | 70.0% | |
| TGGAAGTTGCGGCGGCGCGT+GGG | + | chr8.1:23390552-23390571 | MS.gene011617:CDS | 70.0% | |
| ACCGGCGAAGATGCCGGCGG+AGG | + | chr8.1:23390458-23390477 | MS.gene011617:CDS | 75.0% | |
| CGGAGGAAGCGGTGGCGCAC+CGG | + | chr8.1:23390264-23390283 | MS.gene011617:CDS | 75.0% | |
| CTGCGGCGGCTTCTTGGGCC+CGG | - | chr8.1:23390397-23390416 | None:intergenic | 75.0% | |
| GCCTCCGCCGGCATCTTCGC+CGG | - | chr8.1:23390462-23390481 | None:intergenic | 75.0% | |
| GGCGAAGATGCCGGCGGAGG+CGG | + | chr8.1:23390461-23390480 | MS.gene011617:CDS | 75.0% | |
| GTGGAAGTTGCGGCGGCGCG+TGG | + | chr8.1:23390551-23390570 | MS.gene011617:CDS | 75.0% | |
| TGCGGCGGCTTCTTGGGCCC+GGG | - | chr8.1:23390396-23390415 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 23389340 | 23390724 | 23389340 | ID=MS.gene011617 |
| chr8.1 | mRNA | 23389340 | 23390724 | 23389340 | ID=MS.gene011617.t1;Parent=MS.gene011617 |
| chr8.1 | exon | 23389340 | 23389395 | 23389340 | ID=MS.gene011617.t1.exon1;Parent=MS.gene011617.t1 |
| chr8.1 | CDS | 23389340 | 23389395 | 23389340 | ID=cds.MS.gene011617.t1;Parent=MS.gene011617.t1 |
| chr8.1 | exon | 23389506 | 23389633 | 23389506 | ID=MS.gene011617.t1.exon2;Parent=MS.gene011617.t1 |
| chr8.1 | CDS | 23389506 | 23389633 | 23389506 | ID=cds.MS.gene011617.t1;Parent=MS.gene011617.t1 |
| chr8.1 | exon | 23389730 | 23390076 | 23389730 | ID=MS.gene011617.t1.exon3;Parent=MS.gene011617.t1 |
| chr8.1 | CDS | 23389730 | 23390076 | 23389730 | ID=cds.MS.gene011617.t1;Parent=MS.gene011617.t1 |
| chr8.1 | exon | 23390197 | 23390724 | 23390197 | ID=MS.gene011617.t1.exon4;Parent=MS.gene011617.t1 |
| chr8.1 | CDS | 23390197 | 23390724 | 23390197 | ID=cds.MS.gene011617.t1;Parent=MS.gene011617.t1 |
| Gene Sequence |
| Protein sequence |
