Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015349.t1 | XP_003611413.1 | 89.3 | 345 | 21 | 7 | 1 | 339 | 1 | 335 | 8.50E-141 | 510 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015349.t1 | O81851 | 35.7 | 213 | 112 | 5 | 138 | 339 | 105 | 303 | 9.9e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015349.t1 | G7JYN7 | 89.3 | 345 | 21 | 7 | 1 | 339 | 1 | 335 | 6.1e-141 | 510.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015349 | MS.gene011617 | PPI |
| MS.gene015349 | MS.gene46379 | PPI |
| MS.gene015349 | MS.gene72389 | PPI |
| MS.gene015349 | MS.gene61244 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015349.t1 | MTR_5g013690 | 93.623 | 345 | 6 | 8 | 1 | 339 | 1 | 335 | 0.0 | 627 |
| MS.gene015349.t1 | MTR_5g013690 | 97.112 | 277 | 3 | 2 | 63 | 339 | 1 | 272 | 0.0 | 541 |
| MS.gene015349.t1 | MTR_4g099060 | 58.120 | 351 | 115 | 10 | 1 | 339 | 1 | 331 | 5.52e-98 | 293 |
| MS.gene015349.t1 | MTR_4g099060 | 61.953 | 297 | 90 | 8 | 49 | 339 | 7 | 286 | 3.65e-95 | 284 |
| MS.gene015349.t1 | MTR_1g019250 | 28.571 | 350 | 198 | 10 | 2 | 338 | 30 | 340 | 1.75e-32 | 124 |
| MS.gene015349.t1 | MTR_2g069350 | 31.349 | 252 | 135 | 5 | 123 | 339 | 118 | 366 | 5.52e-30 | 117 |
| MS.gene015349.t1 | MTR_4g083540 | 32.512 | 203 | 129 | 4 | 138 | 339 | 98 | 293 | 1.67e-28 | 112 |
| MS.gene015349.t1 | MTR_3g117970 | 35.450 | 189 | 97 | 5 | 150 | 338 | 32 | 195 | 2.72e-25 | 101 |
| MS.gene015349.t1 | MTR_2g028830 | 32.843 | 204 | 115 | 5 | 147 | 339 | 127 | 319 | 3.89e-25 | 103 |
| MS.gene015349.t1 | MTR_4g036485 | 27.835 | 194 | 126 | 2 | 143 | 336 | 30 | 209 | 1.82e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015349.t1 | AT1G32740 | 43.228 | 347 | 152 | 14 | 1 | 338 | 1 | 311 | 1.20e-76 | 238 |
| MS.gene015349.t1 | AT1G32740 | 41.994 | 331 | 148 | 13 | 16 | 338 | 6 | 300 | 4.90e-70 | 221 |
| MS.gene015349.t1 | AT5G47050 | 41.908 | 346 | 148 | 12 | 1 | 339 | 1 | 300 | 1.49e-68 | 217 |
| MS.gene015349.t1 | AT4G17680 | 41.228 | 342 | 152 | 12 | 1 | 338 | 18 | 314 | 5.17e-65 | 208 |
| MS.gene015349.t1 | AT1G32740 | 41.892 | 296 | 132 | 10 | 49 | 338 | 6 | 267 | 4.92e-63 | 201 |
| MS.gene015349.t1 | AT1G32740 | 41.892 | 296 | 132 | 10 | 49 | 338 | 6 | 267 | 4.92e-63 | 201 |
| MS.gene015349.t1 | AT4G17680 | 42.146 | 261 | 118 | 7 | 82 | 338 | 11 | 242 | 4.62e-52 | 172 |
| MS.gene015349.t1 | AT4G17680 | 46.196 | 184 | 89 | 4 | 159 | 338 | 13 | 190 | 5.60e-42 | 144 |
| MS.gene015349.t1 | AT1G10650 | 29.236 | 301 | 175 | 8 | 54 | 339 | 6 | 283 | 7.19e-37 | 134 |
| MS.gene015349.t1 | AT1G10650 | 29.236 | 301 | 175 | 8 | 54 | 339 | 62 | 339 | 1.70e-36 | 134 |
| MS.gene015349.t1 | AT1G60610 | 28.205 | 312 | 180 | 9 | 42 | 338 | 57 | 339 | 5.33e-35 | 130 |
| MS.gene015349.t1 | AT1G60610 | 28.205 | 312 | 180 | 9 | 42 | 338 | 57 | 339 | 5.33e-35 | 130 |
| MS.gene015349.t1 | AT1G60610 | 28.205 | 312 | 180 | 9 | 42 | 338 | 57 | 339 | 5.33e-35 | 130 |
| MS.gene015349.t1 | AT1G60610 | 28.205 | 312 | 180 | 9 | 42 | 338 | 57 | 339 | 5.33e-35 | 130 |
| MS.gene015349.t1 | AT1G60610 | 28.205 | 312 | 180 | 9 | 42 | 338 | 57 | 339 | 5.33e-35 | 130 |
| MS.gene015349.t1 | AT1G45976 | 31.092 | 238 | 140 | 4 | 103 | 338 | 110 | 325 | 1.67e-30 | 118 |
| MS.gene015349.t1 | AT4G19700 | 35.266 | 207 | 121 | 4 | 138 | 339 | 105 | 303 | 3.95e-28 | 111 |
| MS.gene015349.t1 | AT1G79110 | 33.790 | 219 | 113 | 4 | 144 | 339 | 145 | 354 | 5.27e-28 | 112 |
| MS.gene015349.t1 | AT1G79110 | 33.790 | 219 | 113 | 4 | 144 | 339 | 123 | 332 | 7.12e-28 | 111 |
| MS.gene015349.t1 | AT1G79110 | 33.784 | 222 | 112 | 5 | 144 | 339 | 145 | 357 | 1.21e-26 | 108 |
| MS.gene015349.t1 | AT4G35070 | 32.178 | 202 | 119 | 2 | 144 | 338 | 74 | 264 | 7.25e-26 | 104 |
| MS.gene015349.t1 | AT5G45100 | 34.597 | 211 | 116 | 6 | 138 | 339 | 69 | 266 | 1.69e-25 | 103 |
| MS.gene015349.t1 | AT4G35070 | 34.826 | 201 | 115 | 6 | 144 | 338 | 19 | 209 | 1.86e-25 | 102 |
| MS.gene015349.t1 | AT5G45100 | 34.597 | 211 | 116 | 6 | 138 | 339 | 96 | 293 | 2.45e-25 | 103 |
| MS.gene015349.t1 | AT3G12920 | 29.108 | 213 | 140 | 3 | 137 | 339 | 123 | 334 | 2.24e-24 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCACACCCTCTACATTT+AGG | 0.264445 | 5.4:-7662110 | None:intergenic |
| AACATTGTTTCTACAGGTTT+AGG | 0.285796 | 5.4:+7661414 | MS.gene015349:CDS |
| CGTTGAGGTTTATTTATCTT+AGG | 0.288134 | 5.4:+7662241 | MS.gene015349:CDS |
| GTTGTTGTTGATGATGATTT+TGG | 0.296212 | 5.4:-7661377 | None:intergenic |
| GACCCAACAACAGCCCTTTC+CGG | 0.297991 | 5.4:-7662083 | None:intergenic |
| AGTGTTGAATAACATTATAT+TGG | 0.350775 | 5.4:-7661109 | None:intergenic |
| ACCCAACAACAGCCCTTTCC+GGG | 0.351138 | 5.4:-7662082 | None:intergenic |
| ACAGGTTTAGGTTTATCCTT+TGG | 0.372520 | 5.4:+7661426 | MS.gene015349:CDS |
| GTACCTGGGCTTGAAGGAAT+TGG | 0.377750 | 5.4:-7661581 | None:intergenic |
| TTCTTGTCTCTATTGTCAAA+TGG | 0.389193 | 5.4:+7661519 | MS.gene015349:CDS |
| ATAACCCGACTCCGCATCTT+CGG | 0.400338 | 5.4:-7662054 | None:intergenic |
| CGAAAGAGAGGAAGAGAAAC+TGG | 0.420853 | 5.4:+7661270 | MS.gene015349:CDS |
| ACCCGGAAAGGGCTGTTGTT+GGG | 0.432638 | 5.4:+7662081 | MS.gene015349:CDS |
| AACATTATATTGGATTGATC+AGG | 0.433881 | 5.4:-7661099 | None:intergenic |
| ATGTAGAGGGTGTGGAGAAC+GGG | 0.433928 | 5.4:+7662115 | MS.gene015349:CDS |
| GGAAAGGGCTGTTGTTGGGT+CGG | 0.444897 | 5.4:+7662085 | MS.gene015349:CDS |
| GAAAGGGCTGTTGTTGGGTC+GGG | 0.447339 | 5.4:+7662086 | MS.gene015349:CDS |
| CGCCGCGCGTGCTTCTAACT+CGG | 0.448530 | 5.4:-7661865 | None:intergenic |
| GTGTGGAGAACGGGTTGCTT+CGG | 0.451385 | 5.4:+7662124 | MS.gene015349:CDS |
| AATCAAAACATTGTTTCTAC+AGG | 0.453764 | 5.4:+7661408 | MS.gene015349:CDS |
| GACCCGGAAAGGGCTGTTGT+TGG | 0.469508 | 5.4:+7662080 | MS.gene015349:CDS |
| TGTGGGCTATCATGCGCCTT+AGG | 0.480309 | 5.4:+7662017 | MS.gene015349:CDS |
| TGATCAGGAGGAGCAGGTTG+TGG | 0.486733 | 5.4:-7661084 | None:intergenic |
| TTGGATTGATCAGGAGGAGC+AGG | 0.488786 | 5.4:-7661090 | None:intergenic |
| TTAGAAACGAAGCACAACTT+TGG | 0.491522 | 5.4:+7661892 | MS.gene015349:CDS |
| ACTGAATGTGACACACGTTT+CGG | 0.491809 | 5.4:+7662182 | MS.gene015349:CDS |
| CATGCCGAAGATGCGGAGTC+GGG | 0.493309 | 5.4:+7662050 | MS.gene015349:CDS |
| ATCATGCGCCTTAGGTGTTG+AGG | 0.502848 | 5.4:+7662025 | MS.gene015349:CDS |
| AGAATTGTACCTGGGCTTGA+AGG | 0.506941 | 5.4:-7661587 | None:intergenic |
| CGGGTTATATTGACCCGGAA+AGG | 0.509431 | 5.4:+7662069 | MS.gene015349:CDS |
| TCATGCCGAAGATGCGGAGT+CGG | 0.518119 | 5.4:+7662049 | MS.gene015349:CDS |
| AATAAAGACAGCTGAGGAAA+CGG | 0.520484 | 5.4:+7661785 | MS.gene015349:CDS |
| AATGTAGAGGGTGTGGAGAA+CGG | 0.529787 | 5.4:+7662114 | MS.gene015349:CDS |
| AAAAGAGACAGAGAAACTAT+CGG | 0.533456 | 5.4:+7661757 | MS.gene015349:CDS |
| GGGTTATATTGACCCGGAAA+GGG | 0.534464 | 5.4:+7662070 | MS.gene015349:CDS |
| TAACTCGGCGTTTCTGCGCG+TGG | 0.542104 | 5.4:-7661850 | None:intergenic |
| CGCCGAGTTAGAAGCACGCG+CGG | 0.542639 | 5.4:+7661863 | MS.gene015349:CDS |
| AAAGAGACAGAGAAACTATC+GGG | 0.543907 | 5.4:+7661758 | MS.gene015349:CDS |
| TCATGCGCCTTAGGTGTTGA+GGG | 0.544240 | 5.4:+7662026 | MS.gene015349:CDS |
| TTGATGTTGTTGATCACCAA+AGG | 0.546227 | 5.4:-7661442 | None:intergenic |
| TGACCAATTCCTTCAAGCCC+AGG | 0.546713 | 5.4:+7661578 | MS.gene015349:CDS |
| GGCGCGTCGATTAAGAGAAA+AGG | 0.547391 | 5.4:+7661809 | MS.gene015349:CDS |
| GGTCCTAAATGTAGAGGGTG+TGG | 0.552367 | 5.4:+7662107 | MS.gene015349:CDS |
| ATAATGTTATTCAACACTAC+AGG | 0.554489 | 5.4:+7661114 | MS.gene015349:CDS |
| TTGAGAAAGAGTACATTGGA+AGG | 0.560758 | 5.4:-7661012 | None:intergenic |
| GGCATGACCCTCAACACCTA+AGG | 0.562684 | 5.4:-7662033 | None:intergenic |
| ATTATATTGGATTGATCAGG+AGG | 0.563822 | 5.4:-7661096 | None:intergenic |
| GGGTCGGGTCCTAAATGTAG+AGG | 0.567735 | 5.4:+7662101 | MS.gene015349:CDS |
| ATTGTTGAGAAAGAGTACAT+TGG | 0.573336 | 5.4:-7661016 | None:intergenic |
| AACAGAGGTGAAAATGAATG+TGG | 0.584438 | 5.4:+7661999 | MS.gene015349:CDS |
| CATCATGCTATGATGAGCGG+TGG | 0.585727 | 5.4:+7661969 | MS.gene015349:CDS |
| TGAGTGAGATCAATAAGATG+AGG | 0.596072 | 5.4:-7661351 | None:intergenic |
| GGTGCTAATTCTCGAAAGAG+AGG | 0.618290 | 5.4:+7661258 | MS.gene015349:intron |
| TGAGAAAGAGTACATTGGAA+GGG | 0.618326 | 5.4:-7661011 | None:intergenic |
| TTTAGGGAGAAGAGTTGCAA+CGG | 0.620045 | 5.4:+7661724 | MS.gene015349:intron |
| ACAGAGGTGAAAATGAATGT+GGG | 0.631574 | 5.4:+7662000 | MS.gene015349:CDS |
| TGAGGGTCATGCCGAAGATG+CGG | 0.634312 | 5.4:+7662043 | MS.gene015349:CDS |
| CTAAGATAAATAAACCTCAA+CGG | 0.643495 | 5.4:-7662240 | None:intergenic |
| CAAACACATAAATGTCGACA+CGG | 0.647930 | 5.4:-7662158 | None:intergenic |
| CAATAGAGACAAGAAATGAG+AGG | 0.651832 | 5.4:-7661511 | None:intergenic |
| GGTCGGGTCCTAAATGTAGA+GGG | 0.654690 | 5.4:+7662102 | MS.gene015349:CDS |
| AAGAGAGGAAGAGAAACTGG+TGG | 0.656034 | 5.4:+7661273 | MS.gene015349:CDS |
| GGCGATAATAAAGACAGCTG+AGG | 0.663123 | 5.4:+7661779 | MS.gene015349:CDS |
| AAAGACAGCTGAGGAAACGG+TGG | 0.691301 | 5.4:+7661788 | MS.gene015349:CDS |
| GGAGTCGGGTTATATTGACC+CGG | 0.703789 | 5.4:+7662064 | MS.gene015349:CDS |
| AGCGGTGGCGCAGAAAACAG+AGG | 0.713441 | 5.4:+7661984 | MS.gene015349:CDS |
| CTGCATCATGCTATGATGAG+CGG | 0.730133 | 5.4:+7661966 | MS.gene015349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTATTTTTTTTTTTA+GGG | + | chr5.4:7661708-7661727 | MS.gene015349:intron | 0.0% |
| !!! | TTTTAATTATTTTTTTTTTT+AGG | + | chr5.4:7661707-7661726 | MS.gene015349:intron | 0.0% |
| !! | AATAAAAAAATTTCATTCTT+TGG | - | chr5.4:7661683-7661702 | None:intergenic | 10.0% |
| !!! | ATGATATTTTTTTTTTCTTC+AGG | - | chr5.4:7661223-7661242 | None:intergenic | 15.0% |
| !!! | TATCATTTTTGATTGAATAT+AGG | + | chr5.4:7661237-7661256 | MS.gene015349:intron | 15.0% |
| !!! | AGTGTTGAATAACATTATAT+TGG | - | chr5.4:7661112-7661131 | None:intergenic | 20.0% |
| !!! | ATTTTTAACAGTGAAACAAA+CGG | - | chr5.4:7662216-7662235 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTCAGGAATT+TGG | - | chr5.4:7661216-7661235 | None:intergenic | 20.0% |
| ! | AACATTATATTGGATTGATC+AGG | - | chr5.4:7661102-7661121 | None:intergenic | 25.0% |
| ! | ACACAGAAATTGTTAACATA+TGG | - | chr5.4:7661614-7661633 | None:intergenic | 25.0% |
| ! | ATAATGTTATTCAACACTAC+AGG | + | chr5.4:7661114-7661133 | MS.gene015349:CDS | 25.0% |
| ! | CTAAGATAAATAAACCTCAA+CGG | - | chr5.4:7662243-7662262 | None:intergenic | 25.0% |
| ! | CTCTTTCTCAACAATAAAAA+CGG | + | chr5.4:7661024-7661043 | MS.gene015349:CDS | 25.0% |
| !! | TTTTCTCTTAGAAAAAAGAG+AGG | - | chr5.4:7661156-7661175 | None:intergenic | 25.0% |
| !! | TTTTTAACAGTGAAACAAAC+GGG | - | chr5.4:7662215-7662234 | None:intergenic | 25.0% |
| !!! | AATCAAAACATTGTTTCTAC+AGG | + | chr5.4:7661408-7661427 | MS.gene015349:CDS | 25.0% |
| AAAAGAGACAGAGAAACTAT+CGG | + | chr5.4:7661757-7661776 | MS.gene015349:CDS | 30.0% | |
| AACAACAACAACAACAACAT+GGG | + | chr5.4:7661481-7661500 | MS.gene015349:CDS | 30.0% | |
| AATAAAAACGGTCAAGAACA+AGG | + | chr5.4:7661036-7661055 | MS.gene015349:CDS | 30.0% | |
| ATTATATTGGATTGATCAGG+AGG | - | chr5.4:7661099-7661118 | None:intergenic | 30.0% | |
| TGTTAAAAATTCAACCGTTG+AGG | + | chr5.4:7662226-7662245 | MS.gene015349:CDS | 30.0% | |
| TTCTTGTCTCTATTGTCAAA+TGG | + | chr5.4:7661519-7661538 | MS.gene015349:CDS | 30.0% | |
| TTTCTGTGTTACAGTAGAAT+TGG | + | chr5.4:7661625-7661644 | MS.gene015349:intron | 30.0% | |
| ! | ATTGTTGAGAAAGAGTACAT+TGG | - | chr5.4:7661019-7661038 | None:intergenic | 30.0% |
| ! | TTACAGTAGAATTGGATTAG+TGG | + | chr5.4:7661633-7661652 | MS.gene015349:intron | 30.0% |
| ! | TTTTAACAGTGAAACAAACG+GGG | - | chr5.4:7662214-7662233 | None:intergenic | 30.0% |
| !! | AACATTGTTTCTACAGGTTT+AGG | + | chr5.4:7661414-7661433 | MS.gene015349:CDS | 30.0% |
| !! | AGGAATTTGGTTTGTTTGAT+TGG | - | chr5.4:7661203-7661222 | None:intergenic | 30.0% |
| !! | TACAGTAGAATTGGATTAGT+GGG | + | chr5.4:7661634-7661653 | MS.gene015349:intron | 30.0% |
| !!! | GTTGTTGTTGATGATGATTT+TGG | - | chr5.4:7661380-7661399 | None:intergenic | 30.0% |
| AAAGAGACAGAGAAACTATC+GGG | + | chr5.4:7661758-7661777 | MS.gene015349:CDS | 35.0% | |
| AACAGAGGTGAAAATGAATG+TGG | + | chr5.4:7661999-7662018 | MS.gene015349:CDS | 35.0% | |
| AATAAAGACAGCTGAGGAAA+CGG | + | chr5.4:7661785-7661804 | MS.gene015349:CDS | 35.0% | |
| ACAGAGGTGAAAATGAATGT+GGG | + | chr5.4:7662000-7662019 | MS.gene015349:CDS | 35.0% | |
| ACATATGGAAGAATTGTACC+TGG | - | chr5.4:7661599-7661618 | None:intergenic | 35.0% | |
| CAAACACATAAATGTCGACA+CGG | - | chr5.4:7662161-7662180 | None:intergenic | 35.0% | |
| CAACAACAACAACAACAACA+TGG | + | chr5.4:7661480-7661499 | MS.gene015349:CDS | 35.0% | |
| CAATAGAGACAAGAAATGAG+AGG | - | chr5.4:7661514-7661533 | None:intergenic | 35.0% | |
| CATATGGAAGAATTGTACCT+GGG | - | chr5.4:7661598-7661617 | None:intergenic | 35.0% | |
| TGAGTGAGATCAATAAGATG+AGG | - | chr5.4:7661354-7661373 | None:intergenic | 35.0% | |
| TTAGAAACGAAGCACAACTT+TGG | + | chr5.4:7661892-7661911 | MS.gene015349:CDS | 35.0% | |
| TTGATGTTGTTGATCACCAA+AGG | - | chr5.4:7661445-7661464 | None:intergenic | 35.0% | |
| ! | ACAGGTTTAGGTTTATCCTT+TGG | + | chr5.4:7661426-7661445 | MS.gene015349:CDS | 35.0% |
| ! | TGAGAAAGAGTACATTGGAA+GGG | - | chr5.4:7661014-7661033 | None:intergenic | 35.0% |
| ! | TTGAGAAAGAGTACATTGGA+AGG | - | chr5.4:7661015-7661034 | None:intergenic | 35.0% |
| ACTGAATGTGACACACGTTT+CGG | + | chr5.4:7662182-7662201 | MS.gene015349:CDS | 40.0% | |
| TTTAGGGAGAAGAGTTGCAA+CGG | + | chr5.4:7661724-7661743 | MS.gene015349:intron | 40.0% | |
| AAGAGAGGAAGAGAAACTGG+TGG | + | chr5.4:7661273-7661292 | MS.gene015349:CDS | 45.0% | |
| AGAATTGTACCTGGGCTTGA+AGG | - | chr5.4:7661590-7661609 | None:intergenic | 45.0% | |
| CGAAAGAGAGGAAGAGAAAC+TGG | + | chr5.4:7661270-7661289 | MS.gene015349:CDS | 45.0% | |
| CTGCATCATGCTATGATGAG+CGG | + | chr5.4:7661966-7661985 | MS.gene015349:CDS | 45.0% | |
| GGCGATAATAAAGACAGCTG+AGG | + | chr5.4:7661779-7661798 | MS.gene015349:CDS | 45.0% | |
| GGGTTATATTGACCCGGAAA+GGG | + | chr5.4:7662070-7662089 | MS.gene015349:CDS | 45.0% | |
| GGTGCTAATTCTCGAAAGAG+AGG | + | chr5.4:7661258-7661277 | MS.gene015349:intron | 45.0% | |
| TCTCCACACCCTCTACATTT+AGG | - | chr5.4:7662113-7662132 | None:intergenic | 45.0% | |
| ! | AATGTAGAGGGTGTGGAGAA+CGG | + | chr5.4:7662114-7662133 | MS.gene015349:CDS | 45.0% |
| AAAGACAGCTGAGGAAACGG+TGG | + | chr5.4:7661788-7661807 | MS.gene015349:CDS | 50.0% | |
| ATAACCCGACTCCGCATCTT+CGG | - | chr5.4:7662057-7662076 | None:intergenic | 50.0% | |
| CATCATGCTATGATGAGCGG+TGG | + | chr5.4:7661969-7661988 | MS.gene015349:CDS | 50.0% | |
| CGGGTTATATTGACCCGGAA+AGG | + | chr5.4:7662069-7662088 | MS.gene015349:CDS | 50.0% | |
| GGAGTCGGGTTATATTGACC+CGG | + | chr5.4:7662064-7662083 | MS.gene015349:CDS | 50.0% | |
| GGTCCTAAATGTAGAGGGTG+TGG | + | chr5.4:7662107-7662126 | MS.gene015349:CDS | 50.0% | |
| GGTCGGGTCCTAAATGTAGA+GGG | + | chr5.4:7662102-7662121 | MS.gene015349:CDS | 50.0% | |
| GTACCTGGGCTTGAAGGAAT+TGG | - | chr5.4:7661584-7661603 | None:intergenic | 50.0% | |
| TGACCAATTCCTTCAAGCCC+AGG | + | chr5.4:7661578-7661597 | MS.gene015349:CDS | 50.0% | |
| TTGGATTGATCAGGAGGAGC+AGG | - | chr5.4:7661093-7661112 | None:intergenic | 50.0% | |
| ! | ATCATGCGCCTTAGGTGTTG+AGG | + | chr5.4:7662025-7662044 | MS.gene015349:CDS | 50.0% |
| ! | ATGTAGAGGGTGTGGAGAAC+GGG | + | chr5.4:7662115-7662134 | MS.gene015349:CDS | 50.0% |
| !! | GGCGCGTCGATTAAGAGAAA+AGG | + | chr5.4:7661809-7661828 | MS.gene015349:CDS | 50.0% |
| !! | TCATGCGCCTTAGGTGTTGA+GGG | + | chr5.4:7662026-7662045 | MS.gene015349:CDS | 50.0% |
| ACCCAACAACAGCCCTTTCC+GGG | - | chr5.4:7662085-7662104 | None:intergenic | 55.0% | |
| ACCCGGAAAGGGCTGTTGTT+GGG | + | chr5.4:7662081-7662100 | MS.gene015349:CDS | 55.0% | |
| GAAAGGGCTGTTGTTGGGTC+GGG | + | chr5.4:7662086-7662105 | MS.gene015349:CDS | 55.0% | |
| GACCCAACAACAGCCCTTTC+CGG | - | chr5.4:7662086-7662105 | None:intergenic | 55.0% | |
| GGAAAGGGCTGTTGTTGGGT+CGG | + | chr5.4:7662085-7662104 | MS.gene015349:CDS | 55.0% | |
| GGCATGACCCTCAACACCTA+AGG | - | chr5.4:7662036-7662055 | None:intergenic | 55.0% | |
| GGGTCGGGTCCTAAATGTAG+AGG | + | chr5.4:7662101-7662120 | MS.gene015349:CDS | 55.0% | |
| TCATGCCGAAGATGCGGAGT+CGG | + | chr5.4:7662049-7662068 | MS.gene015349:CDS | 55.0% | |
| TGAGGGTCATGCCGAAGATG+CGG | + | chr5.4:7662043-7662062 | MS.gene015349:CDS | 55.0% | |
| TGATCAGGAGGAGCAGGTTG+TGG | - | chr5.4:7661087-7661106 | None:intergenic | 55.0% | |
| ! | TGTGGGCTATCATGCGCCTT+AGG | + | chr5.4:7662017-7662036 | MS.gene015349:CDS | 55.0% |
| !! | GTGTGGAGAACGGGTTGCTT+CGG | + | chr5.4:7662124-7662143 | MS.gene015349:CDS | 55.0% |
| AGCGGTGGCGCAGAAAACAG+AGG | + | chr5.4:7661984-7662003 | MS.gene015349:CDS | 60.0% | |
| CATGCCGAAGATGCGGAGTC+GGG | + | chr5.4:7662050-7662069 | MS.gene015349:CDS | 60.0% | |
| GACCCGGAAAGGGCTGTTGT+TGG | + | chr5.4:7662080-7662099 | MS.gene015349:CDS | 60.0% | |
| TAACTCGGCGTTTCTGCGCG+TGG | - | chr5.4:7661853-7661872 | None:intergenic | 60.0% | |
| CGCCGCGCGTGCTTCTAACT+CGG | - | chr5.4:7661868-7661887 | None:intergenic | 65.0% | |
| ! | CGCCGAGTTAGAAGCACGCG+CGG | + | chr5.4:7661863-7661882 | MS.gene015349:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 7660991 | 7662262 | 7660991 | ID=MS.gene015349 |
| chr5.4 | mRNA | 7660991 | 7662262 | 7660991 | ID=MS.gene015349.t1;Parent=MS.gene015349 |
| chr5.4 | exon | 7660991 | 7661135 | 7660991 | ID=MS.gene015349.t1.exon1;Parent=MS.gene015349.t1 |
| chr5.4 | CDS | 7660991 | 7661135 | 7660991 | ID=cds.MS.gene015349.t1;Parent=MS.gene015349.t1 |
| chr5.4 | exon | 7661259 | 7661599 | 7661259 | ID=MS.gene015349.t1.exon2;Parent=MS.gene015349.t1 |
| chr5.4 | CDS | 7661259 | 7661599 | 7661259 | ID=cds.MS.gene015349.t1;Parent=MS.gene015349.t1 |
| chr5.4 | exon | 7661729 | 7662262 | 7661729 | ID=MS.gene015349.t1.exon3;Parent=MS.gene015349.t1 |
| chr5.4 | CDS | 7661729 | 7662262 | 7661729 | ID=cds.MS.gene015349.t1;Parent=MS.gene015349.t1 |
| Gene Sequence |
| Protein sequence |
