Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09692.t1 | XP_003611413.1 | 89.7 | 340 | 22 | 7 | 1 | 336 | 1 | 331 | 1.30E-138 | 503.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09692.t1 | O81851 | 35.6 | 208 | 109 | 5 | 139 | 335 | 105 | 298 | 4.6e-20 | 100.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09692.t1 | G7JYN7 | 89.7 | 340 | 22 | 7 | 1 | 336 | 1 | 331 | 9.2e-139 | 503.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09692 | MS.gene011617 | PPI |
| MS.gene09692 | MS.gene46379 | PPI |
| MS.gene09692 | MS.gene72389 | PPI |
| MS.gene09692 | MS.gene61244 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09692.t1 | MTR_5g013690 | 93.235 | 340 | 10 | 8 | 1 | 336 | 1 | 331 | 0.0 | 613 |
| MS.gene09692.t1 | MTR_5g013690 | 97.426 | 272 | 3 | 3 | 65 | 336 | 1 | 268 | 0.0 | 529 |
| MS.gene09692.t1 | MTR_4g099060 | 58.621 | 348 | 111 | 11 | 1 | 336 | 1 | 327 | 6.11e-94 | 286 |
| MS.gene09692.t1 | MTR_4g099060 | 61.433 | 293 | 89 | 7 | 51 | 336 | 7 | 282 | 4.45e-91 | 277 |
| MS.gene09692.t1 | MTR_1g019250 | 29.412 | 340 | 185 | 11 | 2 | 327 | 30 | 328 | 4.79e-32 | 124 |
| MS.gene09692.t1 | MTR_2g069350 | 31.301 | 246 | 130 | 6 | 126 | 335 | 119 | 361 | 1.73e-28 | 115 |
| MS.gene09692.t1 | MTR_4g083540 | 32.323 | 198 | 126 | 4 | 139 | 335 | 98 | 288 | 2.60e-27 | 110 |
| MS.gene09692.t1 | MTR_3g117970 | 36.022 | 186 | 94 | 5 | 151 | 336 | 32 | 192 | 2.75e-24 | 99.8 |
| MS.gene09692.t1 | MTR_4g036485 | 28.061 | 196 | 127 | 2 | 144 | 339 | 30 | 211 | 1.12e-23 | 98.6 |
| MS.gene09692.t1 | MTR_2g028830 | 32.161 | 199 | 113 | 5 | 148 | 335 | 127 | 314 | 1.65e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09692.t1 | AT1G32740 | 43.732 | 343 | 153 | 12 | 1 | 337 | 1 | 309 | 1.48e-78 | 246 |
| MS.gene09692.t1 | AT1G32740 | 42.470 | 332 | 151 | 12 | 12 | 337 | 1 | 298 | 7.28e-72 | 228 |
| MS.gene09692.t1 | AT1G32740 | 42.177 | 294 | 133 | 9 | 49 | 337 | 4 | 265 | 8.30e-64 | 206 |
| MS.gene09692.t1 | AT1G32740 | 42.177 | 294 | 133 | 9 | 49 | 337 | 4 | 265 | 8.30e-64 | 206 |
| MS.gene09692.t1 | AT5G47050 | 40.341 | 352 | 138 | 12 | 1 | 336 | 1 | 296 | 3.72e-63 | 206 |
| MS.gene09692.t1 | AT4G17680 | 40.882 | 340 | 151 | 12 | 1 | 336 | 18 | 311 | 9.00e-62 | 202 |
| MS.gene09692.t1 | AT4G17680 | 42.188 | 256 | 117 | 7 | 85 | 336 | 11 | 239 | 2.97e-49 | 167 |
| MS.gene09692.t1 | AT4G17680 | 46.409 | 181 | 87 | 4 | 160 | 336 | 13 | 187 | 3.17e-40 | 142 |
| MS.gene09692.t1 | AT1G10650 | 30.041 | 243 | 153 | 4 | 103 | 336 | 101 | 335 | 3.48e-34 | 130 |
| MS.gene09692.t1 | AT1G10650 | 30.041 | 243 | 153 | 4 | 103 | 336 | 45 | 279 | 4.07e-34 | 129 |
| MS.gene09692.t1 | AT1G60610 | 27.245 | 323 | 192 | 9 | 29 | 336 | 42 | 336 | 6.87e-32 | 124 |
| MS.gene09692.t1 | AT1G60610 | 27.245 | 323 | 192 | 9 | 29 | 336 | 42 | 336 | 6.87e-32 | 124 |
| MS.gene09692.t1 | AT1G60610 | 27.245 | 323 | 192 | 9 | 29 | 336 | 42 | 336 | 6.87e-32 | 124 |
| MS.gene09692.t1 | AT1G60610 | 27.245 | 323 | 192 | 9 | 29 | 336 | 42 | 336 | 6.87e-32 | 124 |
| MS.gene09692.t1 | AT1G60610 | 27.245 | 323 | 192 | 9 | 29 | 336 | 42 | 336 | 6.87e-32 | 124 |
| MS.gene09692.t1 | AT1G45976 | 27.327 | 333 | 206 | 7 | 2 | 331 | 18 | 317 | 2.49e-29 | 117 |
| MS.gene09692.t1 | AT1G79110 | 33.645 | 214 | 110 | 4 | 145 | 335 | 145 | 349 | 1.84e-27 | 112 |
| MS.gene09692.t1 | AT1G79110 | 32.692 | 208 | 120 | 2 | 145 | 335 | 123 | 327 | 2.24e-27 | 111 |
| MS.gene09692.t1 | AT4G19700 | 35.149 | 202 | 118 | 4 | 139 | 335 | 105 | 298 | 4.19e-27 | 110 |
| MS.gene09692.t1 | AT1G79110 | 33.641 | 217 | 109 | 5 | 145 | 335 | 145 | 352 | 3.77e-26 | 108 |
| MS.gene09692.t1 | AT4G35070 | 32.500 | 200 | 117 | 2 | 145 | 337 | 74 | 262 | 1.61e-25 | 105 |
| MS.gene09692.t1 | AT4G35070 | 35.176 | 199 | 113 | 6 | 145 | 337 | 19 | 207 | 6.20e-25 | 102 |
| MS.gene09692.t1 | AT5G45100 | 34.466 | 206 | 113 | 6 | 139 | 335 | 69 | 261 | 1.77e-24 | 102 |
| MS.gene09692.t1 | AT5G45100 | 34.466 | 206 | 113 | 6 | 139 | 335 | 96 | 288 | 2.51e-24 | 102 |
| MS.gene09692.t1 | AT3G12920 | 28.365 | 208 | 138 | 3 | 138 | 335 | 123 | 329 | 2.82e-24 | 103 |
Find 85 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAAACAATTATGATATT+TGG | 0.143113 | 5.2:+5690585 | MS.gene09692:CDS |
| TCTCCACACCCTCTACATTT+AGG | 0.264445 | 5.2:-5689081 | None:intergenic |
| AACATTGTTTCTACAGGTTT+AGG | 0.285796 | 5.2:+5688392 | MS.gene09692:CDS |
| GTTGTTGTTGATGATGATTT+TGG | 0.296212 | 5.2:-5688355 | None:intergenic |
| GACCCAACAACAGCCCTTTC+CGG | 0.297991 | 5.2:-5689054 | None:intergenic |
| AGTGTTGAATAACATTATAT+TGG | 0.350775 | 5.2:-5688086 | None:intergenic |
| ACCCAACAACAGCCCTTTCC+GGG | 0.351138 | 5.2:-5689053 | None:intergenic |
| ACAGGTTTAGGTTTATCCTT+TGG | 0.372520 | 5.2:+5688404 | MS.gene09692:CDS |
| GTACCTGGGCTTGAAGGAAT+TGG | 0.377750 | 5.2:-5688553 | None:intergenic |
| GTGGTCCAGACGGTGGAAAT+TGG | 0.378894 | 5.2:+5689729 | MS.gene09692:CDS |
| TTCTTGTCTCTATTGTCAAA+TGG | 0.389193 | 5.2:+5688491 | MS.gene09692:CDS |
| ATAACCCGACTCCGCATCTT+CGG | 0.400338 | 5.2:-5689025 | None:intergenic |
| AATGCCTACTATTTACATCT+TGG | 0.401463 | 5.2:+5690524 | MS.gene09692:CDS |
| TGCTTGCCAAAGTTGCGCTT+CGG | 0.419173 | 5.2:-5688869 | None:intergenic |
| AATTGGAATGCGTCTGAGTC+AGG | 0.419686 | 5.2:+5689746 | MS.gene09692:CDS |
| CGAAAGAGAGGAAGAGAAAC+TGG | 0.420853 | 5.2:+5688245 | MS.gene09692:CDS |
| ATTATATTGGATTGATCAGC+AGG | 0.425098 | 5.2:-5688073 | None:intergenic |
| ACCCGGAAAGGGCTGTTGTT+GGG | 0.432638 | 5.2:+5689052 | MS.gene09692:CDS |
| ATGTAGAGGGTGTGGAGAAC+GGG | 0.433928 | 5.2:+5689086 | MS.gene09692:CDS |
| GGGGAAACAACTATCAAGAT+TGG | 0.435511 | 5.2:-5690554 | None:intergenic |
| GGAAAGGGCTGTTGTTGGGT+CGG | 0.444897 | 5.2:+5689056 | MS.gene09692:CDS |
| GAAAGGGCTGTTGTTGGGTC+GGG | 0.447339 | 5.2:+5689057 | MS.gene09692:CDS |
| CGCCGCGCGTGCTTCTAACT+CGG | 0.448530 | 5.2:-5688836 | None:intergenic |
| GTGTGGAGAACGGGTTGCTT+CGG | 0.451385 | 5.2:+5689095 | MS.gene09692:CDS |
| GGCATTTGTGAGTGGAGAAC+GGG | 0.451785 | 5.2:-5690507 | None:intergenic |
| AATCAAAACATTGTTTCTAC+AGG | 0.453764 | 5.2:+5688386 | MS.gene09692:CDS |
| GCATTCCAATTTCCACCGTC+TGG | 0.454829 | 5.2:-5689734 | None:intergenic |
| GACCCGGAAAGGGCTGTTGT+TGG | 0.469508 | 5.2:+5689051 | MS.gene09692:CDS |
| GCCTACTATTTACATCTTGG+AGG | 0.471225 | 5.2:+5690527 | MS.gene09692:CDS |
| TTAGAACCGAAGCGCAACTT+TGG | 0.471968 | 5.2:+5688863 | MS.gene09692:CDS |
| CATGCCGAAGATGCGGAGTC+GGG | 0.475952 | 5.2:+5689021 | MS.gene09692:CDS |
| TGTGGGCTATCATGCGCCTT+AGG | 0.480309 | 5.2:+5688988 | MS.gene09692:CDS |
| ACTGAATGTGACACACGTTT+CGG | 0.491809 | 5.2:+5689153 | MS.gene09692:CDS |
| GGGAAACAACTATCAAGATT+GGG | 0.496343 | 5.2:-5690553 | None:intergenic |
| GCAGGAGCAGGAGCAGGTTG+TGG | 0.499425 | 5.2:-5688055 | None:intergenic |
| CCATGCCGAAGATGCGGAGT+CGG | 0.506558 | 5.2:+5689020 | MS.gene09692:CDS |
| AGAATTGTACCTGGGCTTGA+AGG | 0.506941 | 5.2:-5688559 | None:intergenic |
| ATCATGCGCCTTAGGTGTTG+AGG | 0.507485 | 5.2:+5688996 | MS.gene09692:CDS |
| CGGGTTATATTGACCCGGAA+AGG | 0.509431 | 5.2:+5689040 | MS.gene09692:CDS |
| TGATCAGCAGGAGCAGGAGC+AGG | 0.516874 | 5.2:-5688061 | None:intergenic |
| AATAAAGACAGCTGAGGAAA+CGG | 0.520484 | 5.2:+5688756 | MS.gene09692:CDS |
| TTGGATTGATCAGCAGGAGC+AGG | 0.526238 | 5.2:-5688067 | None:intergenic |
| GGCATGGCCCTCAACACCTA+AGG | 0.527530 | 5.2:-5689004 | None:intergenic |
| ACAAACACACAAATGTCGAC+AGG | 0.528251 | 5.2:-5689130 | None:intergenic |
| TCCTCCAAGATGTAAATAGT+AGG | 0.528543 | 5.2:-5690528 | None:intergenic |
| AATGTAGAGGGTGTGGAGAA+CGG | 0.529787 | 5.2:+5689085 | MS.gene09692:CDS |
| AAAAGAGACAGAGAAACTAT+CGG | 0.533456 | 5.2:+5688728 | MS.gene09692:CDS |
| GGGTTATATTGACCCGGAAA+GGG | 0.534464 | 5.2:+5689041 | MS.gene09692:CDS |
| CGCCGAGTTAGAAGCACGCG+CGG | 0.542639 | 5.2:+5688834 | MS.gene09692:CDS |
| TCATGCGCCTTAGGTGTTGA+GGG | 0.543569 | 5.2:+5688997 | MS.gene09692:CDS |
| AAAGAGACAGAGAAACTATC+GGG | 0.543907 | 5.2:+5688729 | MS.gene09692:CDS |
| TTGATGTTGTTGATCACCAA+AGG | 0.546227 | 5.2:-5688420 | None:intergenic |
| TGACCAATTCCTTCAAGCCC+AGG | 0.546713 | 5.2:+5688550 | MS.gene09692:CDS |
| GGCGCGTCGATTAAGAGAAA+AGG | 0.547391 | 5.2:+5688780 | MS.gene09692:CDS |
| GGTCCTAAATGTAGAGGGTG+TGG | 0.552367 | 5.2:+5689078 | MS.gene09692:CDS |
| ATAATGTTATTCAACACTAC+AGG | 0.554489 | 5.2:+5688091 | MS.gene09692:CDS |
| TTGAGAAAGAGTACATTGGA+AGG | 0.560758 | 5.2:-5687983 | None:intergenic |
| TGTTAATAGGGTGGTCCAGA+CGG | 0.567557 | 5.2:+5689719 | MS.gene09692:intron |
| GGGTCGGGTCCTAAATGTAG+AGG | 0.567735 | 5.2:+5689072 | MS.gene09692:CDS |
| TAACTCGGCGTTCCTGCGCG+TGG | 0.567941 | 5.2:-5688821 | None:intergenic |
| ATTGTTGAGAAAGAGTACAT+TGG | 0.573336 | 5.2:-5687987 | None:intergenic |
| AGGCATTTGTGAGTGGAGAA+CGG | 0.580842 | 5.2:-5690508 | None:intergenic |
| AACAGAGGTGAAAATGAATG+TGG | 0.584438 | 5.2:+5688970 | MS.gene09692:CDS |
| CATCATGCTATGATGAGCGG+TGG | 0.585727 | 5.2:+5688940 | MS.gene09692:CDS |
| TGAGTGAGATCAATAAGATG+AGG | 0.596072 | 5.2:-5688329 | None:intergenic |
| CCGACTCCGCATCTTCGGCA+TGG | 0.599802 | 5.2:-5689020 | None:intergenic |
| TGAGGGCCATGCCGAAGATG+CGG | 0.602738 | 5.2:+5689014 | MS.gene09692:CDS |
| GGTACTAATTCTCGAAAGAG+AGG | 0.611081 | 5.2:+5688233 | MS.gene09692:intron |
| TGAGAAAGAGTACATTGGAA+GGG | 0.618326 | 5.2:-5687982 | None:intergenic |
| TGATAGTTGTTTCCCCACCA+AGG | 0.620762 | 5.2:+5690561 | MS.gene09692:CDS |
| AAATAGTAGGCATTTGTGAG+TGG | 0.628910 | 5.2:-5690515 | None:intergenic |
| ACAGAGGTGAAAATGAATGT+GGG | 0.631574 | 5.2:+5688971 | MS.gene09692:CDS |
| CTAAGATAAATAAACCTCAA+CGG | 0.643495 | 5.2:-5689211 | None:intergenic |
| CAAACACACAAATGTCGACA+GGG | 0.650904 | 5.2:-5689129 | None:intergenic |
| CAATAGAGACAAGAAATGAG+AGG | 0.651832 | 5.2:-5688483 | None:intergenic |
| GGTCGGGTCCTAAATGTAGA+GGG | 0.654690 | 5.2:+5689073 | MS.gene09692:CDS |
| AAGAGAGGAAGAGAAACTGG+TGG | 0.656034 | 5.2:+5688248 | MS.gene09692:CDS |
| GGCGATAATAAAGACAGCTG+AGG | 0.663123 | 5.2:+5688750 | MS.gene09692:CDS |
| GAGTGGAGAACGGGATCTTG+CGG | 0.664470 | 5.2:-5690498 | None:intergenic |
| TAATAGGGTGGTCCAGACGG+TGG | 0.665154 | 5.2:+5689722 | MS.gene09692:intron |
| TTTAGGGAGAAGAGTTACAA+CGG | 0.666721 | 5.2:+5688695 | MS.gene09692:intron |
| AAAGACAGCTGAGGAAACGG+TGG | 0.691301 | 5.2:+5688759 | MS.gene09692:CDS |
| GGAGTCGGGTTATATTGACC+CGG | 0.703789 | 5.2:+5689035 | MS.gene09692:CDS |
| AGCGGTGGCGCAGAAAACAG+AGG | 0.713441 | 5.2:+5688955 | MS.gene09692:CDS |
| CTGCATCATGCTATGATGAG+CGG | 0.730133 | 5.2:+5688937 | MS.gene09692:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTTTTTTTTTA+GGG | + | chr5.2:5688679-5688698 | MS.gene09692:intron | 0.0% |
| !! | AATAAAAAAATTTCATTCTT+TGG | - | chr5.2:5688655-5688674 | None:intergenic | 10.0% |
| !! | AGCCAAAAATTAAATAAAAA+AGG | + | chr5.2:5689285-5689304 | MS.gene09692:intron | 15.0% |
| !! | ATGAAAACAATTATGATATT+TGG | + | chr5.2:5690585-5690604 | MS.gene09692:CDS | 15.0% |
| !! | GCCAAAAATTAAATAAAAAA+GGG | + | chr5.2:5689286-5689305 | MS.gene09692:intron | 15.0% |
| !! | TATCTTTATAAAGTTTAGTA+TGG | + | chr5.2:5689813-5689832 | MS.gene09692:intron | 15.0% |
| !!! | AATTTTTTTGTAGATGAATT+TGG | + | chr5.2:5689637-5689656 | MS.gene09692:intron | 15.0% |
| !!! | ATTTTTTTGTAGATGAATTT+GGG | + | chr5.2:5689638-5689657 | MS.gene09692:intron | 15.0% |
| !!! | GATATTTTTTTTTTTTCTTC+AGG | - | chr5.2:5688196-5688215 | None:intergenic | 15.0% |
| !!! | TATCATTTTTGATTGAATAT+AGG | + | chr5.2:5688212-5688231 | MS.gene09692:intron | 15.0% |
| !!! | TCCCTTTTTTATTTAATTTT+TGG | - | chr5.2:5689290-5689309 | None:intergenic | 15.0% |
| !!! | TGAAAAAGTTTTATATTCAA+TGG | + | chr5.2:5690160-5690179 | MS.gene09692:intron | 15.0% |
| !! | AAATTCATGATGTTATTGTA+TGG | + | chr5.2:5689496-5689515 | MS.gene09692:intron | 20.0% |
| !! | TATTACTTACTATTAGTATG+CGG | + | chr5.2:5690245-5690264 | MS.gene09692:intron | 20.0% |
| !! | TGAATTTAAAAAAGACATCA+AGG | - | chr5.2:5689483-5689502 | None:intergenic | 20.0% |
| !! | TTAAAAAAAACAATGACCTA+GGG | + | chr5.2:5689319-5689338 | MS.gene09692:intron | 20.0% |
| !!! | AAATTTTGTAATTAGCTTGT+TGG | + | chr5.2:5690327-5690346 | MS.gene09692:intron | 20.0% |
| !!! | AATTTTGTAATTAGCTTGTT+GGG | + | chr5.2:5690328-5690347 | MS.gene09692:intron | 20.0% |
| !!! | AGTGTTGAATAACATTATAT+TGG | - | chr5.2:5688089-5688108 | None:intergenic | 20.0% |
| !!! | ATTTTTAACAGTGAAACAAA+CGG | - | chr5.2:5689187-5689206 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGAGAAAAGTATA+TGG | + | chr5.2:5690273-5690292 | MS.gene09692:intron | 20.0% |
| !!! | TTTTTTTTTCTTCAGGAATT+TGG | - | chr5.2:5688189-5688208 | None:intergenic | 20.0% |
| ! | AAAAAAAACCCATATCAACA+AGG | - | chr5.2:5689565-5689584 | None:intergenic | 25.0% |
| ! | AATCTTAATGTTGGTATTTG+GGG | + | chr5.2:5689977-5689996 | MS.gene09692:intron | 25.0% |
| ! | ACACAGAAATTGTTAACATA+TGG | - | chr5.2:5688586-5688605 | None:intergenic | 25.0% |
| ! | AGATAAAGAAGAAAGTTAGA+TGG | + | chr5.2:5689926-5689945 | MS.gene09692:intron | 25.0% |
| ! | ATAATGTTATTCAACACTAC+AGG | + | chr5.2:5688091-5688110 | MS.gene09692:CDS | 25.0% |
| ! | CTAAGATAAATAAACCTCAA+CGG | - | chr5.2:5689214-5689233 | None:intergenic | 25.0% |
| ! | CTCTTTCTCAACAATAAAAA+CGG | + | chr5.2:5687995-5688014 | MS.gene09692:CDS | 25.0% |
| ! | GAATCTTAATGTTGGTATTT+GGG | + | chr5.2:5689976-5689995 | MS.gene09692:intron | 25.0% |
| ! | GTTAAAAAAAACAATGACCT+AGG | + | chr5.2:5689318-5689337 | MS.gene09692:intron | 25.0% |
| ! | TAAAAAAAACAATGACCTAG+GGG | + | chr5.2:5689320-5689339 | MS.gene09692:intron | 25.0% |
| ! | TGGAATCTTCTTTGTTAATA+GGG | + | chr5.2:5689707-5689726 | MS.gene09692:intron | 25.0% |
| ! | TTATTCACTCATAAGTTGTA+TGG | + | chr5.2:5690412-5690431 | MS.gene09692:intron | 25.0% |
| ! | TTGATTTCATTATCGTAAGT+GGG | + | chr5.2:5690044-5690063 | MS.gene09692:intron | 25.0% |
| !! | TCATAATTGTTTTCATTCCT+TGG | - | chr5.2:5690581-5690600 | None:intergenic | 25.0% |
| !! | TTGGGTGAATGATTTTTAAT+GGG | + | chr5.2:5690084-5690103 | MS.gene09692:intron | 25.0% |
| !! | TTTGATTTCATTATCGTAAG+TGG | + | chr5.2:5690043-5690062 | MS.gene09692:intron | 25.0% |
| !! | TTTTCTCTTAGAAAAAAGAG+AGG | - | chr5.2:5688133-5688152 | None:intergenic | 25.0% |
| !! | TTTTTAACAGTGAAACAAAC+GGG | - | chr5.2:5689186-5689205 | None:intergenic | 25.0% |
| !!! | AATCAAAACATTGTTTCTAC+AGG | + | chr5.2:5688386-5688405 | MS.gene09692:CDS | 25.0% |
| !!! | ATTTTGTAATTAGCTTGTTG+GGG | + | chr5.2:5690329-5690348 | MS.gene09692:intron | 25.0% |
| AAAAGAGACAGAGAAACTAT+CGG | + | chr5.2:5688728-5688747 | MS.gene09692:CDS | 30.0% | |
| AATAAAAACGGTCAAGAACA+AGG | + | chr5.2:5688007-5688026 | MS.gene09692:CDS | 30.0% | |
| AATCTTCTTTGTTAATAGGG+TGG | + | chr5.2:5689710-5689729 | MS.gene09692:intron | 30.0% | |
| AATGCCTACTATTTACATCT+TGG | + | chr5.2:5690524-5690543 | MS.gene09692:CDS | 30.0% | |
| ATAAAACCATACAAACAGTG+AGG | - | chr5.2:5690186-5690205 | None:intergenic | 30.0% | |
| ATGAATTTGGGAAGTGATTT+AGG | + | chr5.2:5689650-5689669 | MS.gene09692:intron | 30.0% | |
| ATGGTGAGACAATTTAGTTA+TGG | + | chr5.2:5689847-5689866 | MS.gene09692:intron | 30.0% | |
| ATTATATTGGATTGATCAGC+AGG | - | chr5.2:5688076-5688095 | None:intergenic | 30.0% | |
| CGAATCTTAATGTTGGTATT+TGG | + | chr5.2:5689975-5689994 | MS.gene09692:intron | 30.0% | |
| CGTTGAGGTTTATTTATCTT+AGG | + | chr5.2:5689212-5689231 | MS.gene09692:intron | 30.0% | |
| CTGGAATCTTCTTTGTTAAT+AGG | + | chr5.2:5689706-5689725 | MS.gene09692:intron | 30.0% | |
| TAGTATGGTAAAGTCACATA+TGG | + | chr5.2:5689828-5689847 | MS.gene09692:intron | 30.0% | |
| TGATTTCATTATCGTAAGTG+GGG | + | chr5.2:5690045-5690064 | MS.gene09692:intron | 30.0% | |
| TGGTGAGACAATTTAGTTAT+GGG | + | chr5.2:5689848-5689867 | MS.gene09692:intron | 30.0% | |
| TGGTTTAGTTAGTTAAGTCT+TGG | + | chr5.2:5690293-5690312 | MS.gene09692:intron | 30.0% | |
| TGTTAAAAATTCAACCGTTG+AGG | + | chr5.2:5689197-5689216 | MS.gene09692:CDS | 30.0% | |
| TTAGTTAGTTAAGTCTTGGT+TGG | + | chr5.2:5690297-5690316 | MS.gene09692:intron | 30.0% | |
| TTCAAATCAGCATAACTCAA+TGG | - | chr5.2:5690016-5690035 | None:intergenic | 30.0% | |
| TTCTTGTCTCTATTGTCAAA+TGG | + | chr5.2:5688491-5688510 | MS.gene09692:CDS | 30.0% | |
| TTTCTGTGTTACAGTAGAAT+TGG | + | chr5.2:5688597-5688616 | MS.gene09692:intron | 30.0% | |
| ! | AATTGTTTTCATTCCTTGGT+GGG | - | chr5.2:5690577-5690596 | None:intergenic | 30.0% |
| ! | ATTGTTGAGAAAGAGTACAT+TGG | - | chr5.2:5687990-5688009 | None:intergenic | 30.0% |
| ! | CTTGGGTGAATGATTTTTAA+TGG | + | chr5.2:5690083-5690102 | MS.gene09692:intron | 30.0% |
| ! | GCTTCAATAAGATTTTCTAC+TGG | + | chr5.2:5689687-5689706 | MS.gene09692:intron | 30.0% |
| ! | TAATGGGGCATGATTTTTAA+TGG | + | chr5.2:5690100-5690119 | MS.gene09692:intron | 30.0% |
| ! | TAATTGTTTTCATTCCTTGG+TGG | - | chr5.2:5690578-5690597 | None:intergenic | 30.0% |
| ! | TGGGTGAATGATTTTTAATG+GGG | + | chr5.2:5690085-5690104 | MS.gene09692:intron | 30.0% |
| ! | TTACAGTAGAATTGGATTAG+TGG | + | chr5.2:5688605-5688624 | MS.gene09692:intron | 30.0% |
| ! | TTTTAACAGTGAAACAAACG+GGG | - | chr5.2:5689185-5689204 | None:intergenic | 30.0% |
| !! | AACATTGTTTCTACAGGTTT+AGG | + | chr5.2:5688392-5688411 | MS.gene09692:CDS | 30.0% |
| !! | AGGAATTTGGTTTGTTTGAT+TGG | - | chr5.2:5688176-5688195 | None:intergenic | 30.0% |
| !! | TACAGTAGAATTGGATTAGT+GGG | + | chr5.2:5688606-5688625 | MS.gene09692:intron | 30.0% |
| !! | TTGAAAAGCCTTGTTGATAT+GGG | + | chr5.2:5689554-5689573 | MS.gene09692:intron | 30.0% |
| !! | TTTGAAAAGCCTTGTTGATA+TGG | + | chr5.2:5689553-5689572 | MS.gene09692:intron | 30.0% |
| !!! | AGTGGCATTTTTTTGTTGTT+GGG | + | chr5.2:5689375-5689394 | MS.gene09692:intron | 30.0% |
| !!! | GTTGTTGTTGATGATGATTT+TGG | - | chr5.2:5688358-5688377 | None:intergenic | 30.0% |
| !!! | TAGTGGCATTTTTTTGTTGT+TGG | + | chr5.2:5689374-5689393 | MS.gene09692:intron | 30.0% |
| !!! | TATGGGTTTTTTTTGCAAGT+AGG | + | chr5.2:5689571-5689590 | MS.gene09692:intron | 30.0% |
| !!! | TTTTGTAATTAGCTTGTTGG+GGG | + | chr5.2:5690330-5690349 | MS.gene09692:intron | 30.0% |
| AAAAAATGCCACTATCCATG+TGG | - | chr5.2:5689368-5689387 | None:intergenic | 35.0% | |
| AAAGAGACAGAGAAACTATC+GGG | + | chr5.2:5688729-5688748 | MS.gene09692:CDS | 35.0% | |
| AAATAGTAGGCATTTGTGAG+TGG | - | chr5.2:5690518-5690537 | None:intergenic | 35.0% | |
| AACAGAGGTGAAAATGAATG+TGG | + | chr5.2:5688970-5688989 | MS.gene09692:CDS | 35.0% | |
| AATAAAGACAGCTGAGGAAA+CGG | + | chr5.2:5688756-5688775 | MS.gene09692:CDS | 35.0% | |
| AATCAGCATAACTCAATGGA+CGG | - | chr5.2:5690012-5690031 | None:intergenic | 35.0% | |
| ACAGAGGTGAAAATGAATGT+GGG | + | chr5.2:5688971-5688990 | MS.gene09692:CDS | 35.0% | |
| ACATATGGAAGAATTGTACC+TGG | - | chr5.2:5688571-5688590 | None:intergenic | 35.0% | |
| ACCAACATTAAGATTCGTCA+CGG | - | chr5.2:5689972-5689991 | None:intergenic | 35.0% | |
| AGAAAGTTAGATGGTGTGTA+TGG | + | chr5.2:5689935-5689954 | MS.gene09692:intron | 35.0% | |
| ATTTCATTATCGTAAGTGGG+GGG | + | chr5.2:5690047-5690066 | MS.gene09692:intron | 35.0% | |
| CAATAGAGACAAGAAATGAG+AGG | - | chr5.2:5688486-5688505 | None:intergenic | 35.0% | |
| CATATGGAAGAATTGTACCT+GGG | - | chr5.2:5688570-5688589 | None:intergenic | 35.0% | |
| GATTTCATTATCGTAAGTGG+GGG | + | chr5.2:5690046-5690065 | MS.gene09692:intron | 35.0% | |
| GGGAAACAACTATCAAGATT+GGG | - | chr5.2:5690556-5690575 | None:intergenic | 35.0% | |
| TCCTCCAAGATGTAAATAGT+AGG | - | chr5.2:5690531-5690550 | None:intergenic | 35.0% | |
| TGAGTGAGATCAATAAGATG+AGG | - | chr5.2:5688332-5688351 | None:intergenic | 35.0% | |
| TGCTACAACAACAACAACAT+GGG | + | chr5.2:5688453-5688472 | MS.gene09692:CDS | 35.0% | |
| TTGATGTTGTTGATCACCAA+AGG | - | chr5.2:5688423-5688442 | None:intergenic | 35.0% | |
| TTGCTACAACAACAACAACA+TGG | + | chr5.2:5688452-5688471 | MS.gene09692:CDS | 35.0% | |
| TTTAGGGAGAAGAGTTACAA+CGG | + | chr5.2:5688695-5688714 | MS.gene09692:intron | 35.0% | |
| ! | ACAGGTTTAGGTTTATCCTT+TGG | + | chr5.2:5688404-5688423 | MS.gene09692:CDS | 35.0% |
| ! | ATTGTTTTCATTCCTTGGTG+GGG | - | chr5.2:5690576-5690595 | None:intergenic | 35.0% |
| ! | TGAGAAAGAGTACATTGGAA+GGG | - | chr5.2:5687985-5688004 | None:intergenic | 35.0% |
| ! | TTGAGAAAGAGTACATTGGA+AGG | - | chr5.2:5687986-5688005 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTTGCAAGTAGGA+TGG | + | chr5.2:5689575-5689594 | MS.gene09692:intron | 35.0% |
| AAAAAACAATGACCTAGGGG+TGG | + | chr5.2:5689323-5689342 | MS.gene09692:intron | 40.0% | |
| ACAAACACACAAATGTCGAC+AGG | - | chr5.2:5689133-5689152 | None:intergenic | 40.0% | |
| ACTGAATGTGACACACGTTT+CGG | + | chr5.2:5689153-5689172 | MS.gene09692:CDS | 40.0% | |
| CAAACACACAAATGTCGACA+GGG | - | chr5.2:5689132-5689151 | None:intergenic | 40.0% | |
| CACAAATTGTGCCCATAACT+AGG | - | chr5.2:5689879-5689898 | None:intergenic | 40.0% | |
| GCCTACTATTTACATCTTGG+AGG | + | chr5.2:5690527-5690546 | MS.gene09692:CDS | 40.0% | |
| GGGGAAACAACTATCAAGAT+TGG | - | chr5.2:5690557-5690576 | None:intergenic | 40.0% | |
| GGTACTAATTCTCGAAAGAG+AGG | + | chr5.2:5688233-5688252 | MS.gene09692:intron | 40.0% | |
| GTGGATGAATGTACATGTCA+TGG | + | chr5.2:5689342-5689361 | MS.gene09692:intron | 40.0% | |
| GTTAGTTAAGTCTTGGTTGG+TGG | + | chr5.2:5690300-5690319 | MS.gene09692:intron | 40.0% | |
| ! | GGGAAGTGATTTAGGATATG+TGG | + | chr5.2:5689658-5689677 | MS.gene09692:intron | 40.0% |
| ! | TATGGGTTGCACCTAGTTAT+GGG | + | chr5.2:5689865-5689884 | MS.gene09692:intron | 40.0% |
| ! | TGTTGGGTTCTTCACTCTTT+TGG | + | chr5.2:5689391-5689410 | MS.gene09692:intron | 40.0% |
| ! | TTATGGGTTGCACCTAGTTA+TGG | + | chr5.2:5689864-5689883 | MS.gene09692:intron | 40.0% |
| AAGAGAGGAAGAGAAACTGG+TGG | + | chr5.2:5688248-5688267 | MS.gene09692:CDS | 45.0% | |
| AATGTTGGTATTTGGGGACC+AGG | + | chr5.2:5689983-5690002 | MS.gene09692:intron | 45.0% | |
| AATTGGAATGCGTCTGAGTC+AGG | + | chr5.2:5689746-5689765 | MS.gene09692:CDS | 45.0% | |
| AGAATTGTACCTGGGCTTGA+AGG | - | chr5.2:5688562-5688581 | None:intergenic | 45.0% | |
| AGGCATTTGTGAGTGGAGAA+CGG | - | chr5.2:5690511-5690530 | None:intergenic | 45.0% | |
| ATGTACATGTCATGGCCACA+TGG | + | chr5.2:5689350-5689369 | MS.gene09692:intron | 45.0% | |
| ATGTACATTCATCCACCCCT+AGG | - | chr5.2:5689338-5689357 | None:intergenic | 45.0% | |
| ATTATCGTAAGTGGGGGGAA+GGG | + | chr5.2:5690052-5690071 | MS.gene09692:intron | 45.0% | |
| ATTTACAAAAAGCCACGCGC+AGG | + | chr5.2:5688809-5688828 | MS.gene09692:CDS | 45.0% | |
| CAATGGCCTCACTGTTTGTA+TGG | + | chr5.2:5690177-5690196 | MS.gene09692:intron | 45.0% | |
| CGAAAGAGAGGAAGAGAAAC+TGG | + | chr5.2:5688245-5688264 | MS.gene09692:CDS | 45.0% | |
| CTGCATCATGCTATGATGAG+CGG | + | chr5.2:5688937-5688956 | MS.gene09692:CDS | 45.0% | |
| GCCGTGACGAATCTTAATGT+TGG | + | chr5.2:5689968-5689987 | MS.gene09692:intron | 45.0% | |
| GGCGATAATAAAGACAGCTG+AGG | + | chr5.2:5688750-5688769 | MS.gene09692:CDS | 45.0% | |
| GGGTTATATTGACCCGGAAA+GGG | + | chr5.2:5689041-5689060 | MS.gene09692:CDS | 45.0% | |
| TCTCCACACCCTCTACATTT+AGG | - | chr5.2:5689084-5689103 | None:intergenic | 45.0% | |
| TGTTAATAGGGTGGTCCAGA+CGG | + | chr5.2:5689719-5689738 | MS.gene09692:intron | 45.0% | |
| TTAGAACCGAAGCGCAACTT+TGG | + | chr5.2:5688863-5688882 | MS.gene09692:CDS | 45.0% | |
| ! | AATGTAGAGGGTGTGGAGAA+CGG | + | chr5.2:5689085-5689104 | MS.gene09692:CDS | 45.0% |
| ! | TGATAGTTGTTTCCCCACCA+AGG | + | chr5.2:5690561-5690580 | MS.gene09692:CDS | 45.0% |
| !!! | GGGGAAGGGCATTTTTTCTT+GGG | + | chr5.2:5690066-5690085 | MS.gene09692:intron | 45.0% |
| !!! | GTTTTAATTTTTTTTTTTTT+AGG | + | chr5.2:5688678-5688697 | MS.gene09692:intron | 5.0% |
| AAAGACAGCTGAGGAAACGG+TGG | + | chr5.2:5688759-5688778 | MS.gene09692:CDS | 50.0% | |
| ATAACCCGACTCCGCATCTT+CGG | - | chr5.2:5689028-5689047 | None:intergenic | 50.0% | |
| ATGCGTCTGAGTCAGGTAAG+TGG | + | chr5.2:5689753-5689772 | MS.gene09692:intron | 50.0% | |
| CATCATGCTATGATGAGCGG+TGG | + | chr5.2:5688940-5688959 | MS.gene09692:CDS | 50.0% | |
| CATTATCGTAAGTGGGGGGA+AGG | + | chr5.2:5690051-5690070 | MS.gene09692:intron | 50.0% | |
| CGGGTTATATTGACCCGGAA+AGG | + | chr5.2:5689040-5689059 | MS.gene09692:CDS | 50.0% | |
| GCATTCCAATTTCCACCGTC+TGG | - | chr5.2:5689737-5689756 | None:intergenic | 50.0% | |
| GGAGTCGGGTTATATTGACC+CGG | + | chr5.2:5689035-5689054 | MS.gene09692:CDS | 50.0% | |
| GGCATTTGTGAGTGGAGAAC+GGG | - | chr5.2:5690510-5690529 | None:intergenic | 50.0% | |
| GGTCCTAAATGTAGAGGGTG+TGG | + | chr5.2:5689078-5689097 | MS.gene09692:CDS | 50.0% | |
| GGTCGGGTCCTAAATGTAGA+GGG | + | chr5.2:5689073-5689092 | MS.gene09692:CDS | 50.0% | |
| GTACCTGGGCTTGAAGGAAT+TGG | - | chr5.2:5688556-5688575 | None:intergenic | 50.0% | |
| TAACTCAATGGACGGTGACC+TGG | - | chr5.2:5690004-5690023 | None:intergenic | 50.0% | |
| TGACCAATTCCTTCAAGCCC+AGG | + | chr5.2:5688550-5688569 | MS.gene09692:CDS | 50.0% | |
| TGCTTGCCAAAGTTGCGCTT+CGG | - | chr5.2:5688872-5688891 | None:intergenic | 50.0% | |
| TGTCATGGCCACATGGATAG+TGG | + | chr5.2:5689357-5689376 | MS.gene09692:intron | 50.0% | |
| TTGGATTGATCAGCAGGAGC+AGG | - | chr5.2:5688070-5688089 | None:intergenic | 50.0% | |
| ! | ATCATGCGCCTTAGGTGTTG+AGG | + | chr5.2:5688996-5689015 | MS.gene09692:CDS | 50.0% |
| ! | ATGTAGAGGGTGTGGAGAAC+GGG | + | chr5.2:5689086-5689105 | MS.gene09692:CDS | 50.0% |
| ! | GGATGGATGCTTGTTGCACA+AGG | + | chr5.2:5689592-5689611 | MS.gene09692:intron | 50.0% |
| !! | GGCGCGTCGATTAAGAGAAA+AGG | + | chr5.2:5688780-5688799 | MS.gene09692:CDS | 50.0% |
| !! | TCATGCGCCTTAGGTGTTGA+GGG | + | chr5.2:5688997-5689016 | MS.gene09692:CDS | 50.0% |
| !!! | GGGGGAAGGGCATTTTTTCT+TGG | + | chr5.2:5690065-5690084 | MS.gene09692:intron | 50.0% |
| ACCCAACAACAGCCCTTTCC+GGG | - | chr5.2:5689056-5689075 | None:intergenic | 55.0% | |
| ACCCGGAAAGGGCTGTTGTT+GGG | + | chr5.2:5689052-5689071 | MS.gene09692:CDS | 55.0% | |
| GAAAGGGCTGTTGTTGGGTC+GGG | + | chr5.2:5689057-5689076 | MS.gene09692:CDS | 55.0% | |
| GACCCAACAACAGCCCTTTC+CGG | - | chr5.2:5689057-5689076 | None:intergenic | 55.0% | |
| GAGTGGAGAACGGGATCTTG+CGG | - | chr5.2:5690501-5690520 | None:intergenic | 55.0% | |
| GGAAAGGGCTGTTGTTGGGT+CGG | + | chr5.2:5689056-5689075 | MS.gene09692:CDS | 55.0% | |
| GGGTCGGGTCCTAAATGTAG+AGG | + | chr5.2:5689072-5689091 | MS.gene09692:CDS | 55.0% | |
| GTGGTCCAGACGGTGGAAAT+TGG | + | chr5.2:5689729-5689748 | MS.gene09692:CDS | 55.0% | |
| TAATAGGGTGGTCCAGACGG+TGG | + | chr5.2:5689722-5689741 | MS.gene09692:intron | 55.0% | |
| ! | TGTGGGCTATCATGCGCCTT+AGG | + | chr5.2:5688988-5689007 | MS.gene09692:CDS | 55.0% |
| !! | GTGTGGAGAACGGGTTGCTT+CGG | + | chr5.2:5689095-5689114 | MS.gene09692:CDS | 55.0% |
| AGCGGTGGCGCAGAAAACAG+AGG | + | chr5.2:5688955-5688974 | MS.gene09692:CDS | 60.0% | |
| CATGCCGAAGATGCGGAGTC+GGG | + | chr5.2:5689021-5689040 | MS.gene09692:CDS | 60.0% | |
| CCATGCCGAAGATGCGGAGT+CGG | + | chr5.2:5689020-5689039 | MS.gene09692:CDS | 60.0% | |
| GACCCGGAAAGGGCTGTTGT+TGG | + | chr5.2:5689051-5689070 | MS.gene09692:CDS | 60.0% | |
| GGCATGGCCCTCAACACCTA+AGG | - | chr5.2:5689007-5689026 | None:intergenic | 60.0% | |
| TGAGGGCCATGCCGAAGATG+CGG | + | chr5.2:5689014-5689033 | MS.gene09692:CDS | 60.0% | |
| TGATCAGCAGGAGCAGGAGC+AGG | - | chr5.2:5688064-5688083 | None:intergenic | 60.0% | |
| CCGACTCCGCATCTTCGGCA+TGG | - | chr5.2:5689023-5689042 | None:intergenic | 65.0% | |
| CGCCGCGCGTGCTTCTAACT+CGG | - | chr5.2:5688839-5688858 | None:intergenic | 65.0% | |
| GCAGGAGCAGGAGCAGGTTG+TGG | - | chr5.2:5688058-5688077 | None:intergenic | 65.0% | |
| TAACTCGGCGTTCCTGCGCG+TGG | - | chr5.2:5688824-5688843 | None:intergenic | 65.0% | |
| ! | CGCCGAGTTAGAAGCACGCG+CGG | + | chr5.2:5688834-5688853 | MS.gene09692:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 5687962 | 5690646 | 5687962 | ID=MS.gene09692 |
| chr5.2 | mRNA | 5687962 | 5690646 | 5687962 | ID=MS.gene09692.t1;Parent=MS.gene09692 |
| chr5.2 | exon | 5687962 | 5688112 | 5687962 | ID=MS.gene09692.t1.exon1;Parent=MS.gene09692.t1 |
| chr5.2 | CDS | 5687962 | 5688112 | 5687962 | ID=cds.MS.gene09692.t1;Parent=MS.gene09692.t1 |
| chr5.2 | exon | 5688234 | 5688571 | 5688234 | ID=MS.gene09692.t1.exon2;Parent=MS.gene09692.t1 |
| chr5.2 | CDS | 5688234 | 5688571 | 5688234 | ID=cds.MS.gene09692.t1;Parent=MS.gene09692.t1 |
| chr5.2 | exon | 5688700 | 5689218 | 5688700 | ID=MS.gene09692.t1.exon3;Parent=MS.gene09692.t1 |
| chr5.2 | CDS | 5688700 | 5689218 | 5688700 | ID=cds.MS.gene09692.t1;Parent=MS.gene09692.t1 |
| chr5.2 | exon | 5689728 | 5689767 | 5689728 | ID=MS.gene09692.t1.exon4;Parent=MS.gene09692.t1 |
| chr5.2 | CDS | 5689728 | 5689767 | 5689728 | ID=cds.MS.gene09692.t1;Parent=MS.gene09692.t1 |
| chr5.2 | exon | 5690441 | 5690646 | 5690441 | ID=MS.gene09692.t1.exon5;Parent=MS.gene09692.t1 |
| chr5.2 | CDS | 5690441 | 5690646 | 5690441 | ID=cds.MS.gene09692.t1;Parent=MS.gene09692.t1 |
| Gene Sequence |
| Protein sequence |
