Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21505.t1 | XP_003611413.1 | 87.7 | 342 | 27 | 6 | 1 | 338 | 1 | 331 | 2.40E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21505.t1 | O81851 | 35.6 | 208 | 109 | 5 | 141 | 337 | 105 | 298 | 3.1e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21505.t1 | G7JYN7 | 87.7 | 342 | 27 | 6 | 1 | 338 | 1 | 331 | 1.7e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21505 | MS.gene46379 | PPI |
| MS.gene21505 | MS.gene72389 | PPI |
| MS.gene21505 | MS.gene61244 | PPI |
| MS.gene21505 | MS.gene011617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21505.t1 | MTR_5g013690 | 93.275 | 342 | 8 | 7 | 1 | 338 | 1 | 331 | 0.0 | 621 |
| MS.gene21505.t1 | MTR_5g013690 | 97.080 | 274 | 2 | 2 | 65 | 338 | 1 | 268 | 0.0 | 535 |
| MS.gene21505.t1 | MTR_4g099060 | 59.538 | 346 | 113 | 11 | 1 | 338 | 1 | 327 | 1.41e-94 | 285 |
| MS.gene21505.t1 | MTR_4g099060 | 62.116 | 293 | 89 | 8 | 51 | 338 | 7 | 282 | 4.02e-92 | 278 |
| MS.gene21505.t1 | MTR_1g019250 | 32.751 | 229 | 132 | 5 | 105 | 329 | 118 | 328 | 2.18e-30 | 119 |
| MS.gene21505.t1 | MTR_2g069350 | 31.174 | 247 | 132 | 5 | 126 | 337 | 118 | 361 | 7.04e-29 | 115 |
| MS.gene21505.t1 | MTR_4g083540 | 32.323 | 198 | 126 | 4 | 141 | 337 | 98 | 288 | 1.39e-27 | 110 |
| MS.gene21505.t1 | MTR_3g117970 | 36.364 | 187 | 94 | 5 | 153 | 339 | 32 | 193 | 8.63e-26 | 103 |
| MS.gene21505.t1 | MTR_4g036485 | 28.571 | 196 | 126 | 2 | 146 | 341 | 30 | 211 | 5.05e-25 | 101 |
| MS.gene21505.t1 | MTR_2g028830 | 32.161 | 199 | 113 | 5 | 150 | 337 | 127 | 314 | 1.36e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21505.t1 | AT1G32740 | 43.353 | 346 | 152 | 13 | 1 | 339 | 1 | 309 | 1.84e-77 | 241 |
| MS.gene21505.t1 | AT1G32740 | 42.121 | 330 | 148 | 12 | 16 | 339 | 6 | 298 | 1.22e-70 | 223 |
| MS.gene21505.t1 | AT5G47050 | 42.319 | 345 | 143 | 13 | 1 | 338 | 1 | 296 | 4.84e-67 | 214 |
| MS.gene21505.t1 | AT4G17680 | 40.936 | 342 | 150 | 12 | 1 | 338 | 18 | 311 | 3.83e-63 | 204 |
| MS.gene21505.t1 | AT1G32740 | 41.751 | 297 | 132 | 10 | 49 | 339 | 4 | 265 | 8.20e-63 | 202 |
| MS.gene21505.t1 | AT1G32740 | 41.751 | 297 | 132 | 10 | 49 | 339 | 4 | 265 | 8.20e-63 | 202 |
| MS.gene21505.t1 | AT4G17680 | 42.085 | 259 | 116 | 7 | 84 | 338 | 11 | 239 | 1.47e-50 | 169 |
| MS.gene21505.t1 | AT4G17680 | 46.409 | 181 | 87 | 4 | 162 | 338 | 13 | 187 | 1.06e-40 | 142 |
| MS.gene21505.t1 | AT1G10650 | 28.716 | 296 | 176 | 7 | 56 | 338 | 62 | 335 | 5.97e-35 | 131 |
| MS.gene21505.t1 | AT1G10650 | 27.740 | 292 | 184 | 5 | 56 | 338 | 6 | 279 | 7.03e-35 | 129 |
| MS.gene21505.t1 | AT1G60610 | 27.385 | 325 | 191 | 9 | 29 | 338 | 42 | 336 | 4.27e-34 | 129 |
| MS.gene21505.t1 | AT1G60610 | 27.385 | 325 | 191 | 9 | 29 | 338 | 42 | 336 | 4.27e-34 | 129 |
| MS.gene21505.t1 | AT1G60610 | 27.385 | 325 | 191 | 9 | 29 | 338 | 42 | 336 | 4.27e-34 | 129 |
| MS.gene21505.t1 | AT1G60610 | 27.385 | 325 | 191 | 9 | 29 | 338 | 42 | 336 | 4.27e-34 | 129 |
| MS.gene21505.t1 | AT1G60610 | 27.385 | 325 | 191 | 9 | 29 | 338 | 42 | 336 | 4.27e-34 | 129 |
| MS.gene21505.t1 | AT1G45976 | 30.736 | 231 | 135 | 4 | 105 | 333 | 110 | 317 | 1.49e-28 | 114 |
| MS.gene21505.t1 | AT4G19700 | 35.149 | 202 | 118 | 4 | 141 | 337 | 105 | 298 | 2.11e-27 | 110 |
| MS.gene21505.t1 | AT1G79110 | 33.645 | 214 | 110 | 4 | 147 | 337 | 145 | 349 | 2.82e-27 | 110 |
| MS.gene21505.t1 | AT1G79110 | 33.645 | 214 | 110 | 4 | 147 | 337 | 123 | 327 | 3.89e-27 | 110 |
| MS.gene21505.t1 | AT1G79110 | 33.641 | 217 | 109 | 5 | 147 | 337 | 145 | 352 | 5.73e-26 | 107 |
| MS.gene21505.t1 | AT4G35070 | 32.500 | 200 | 117 | 2 | 147 | 339 | 74 | 262 | 8.13e-26 | 105 |
| MS.gene21505.t1 | AT4G35070 | 35.176 | 199 | 113 | 6 | 147 | 339 | 19 | 207 | 2.85e-25 | 102 |
| MS.gene21505.t1 | AT5G45100 | 34.466 | 206 | 113 | 6 | 141 | 337 | 69 | 261 | 1.23e-24 | 102 |
| MS.gene21505.t1 | AT5G45100 | 34.466 | 206 | 113 | 6 | 141 | 337 | 96 | 288 | 1.73e-24 | 102 |
| MS.gene21505.t1 | AT3G12920 | 28.365 | 208 | 138 | 3 | 140 | 337 | 123 | 329 | 4.76e-23 | 99.0 |
Find 75 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCACACCCTCTACATTT+AGG | 0.264445 | 5.3:-6873843 | None:intergenic |
| AACATTGTTTCTACAGGTTT+AGG | 0.285796 | 5.3:+6873142 | MS.gene21505:CDS |
| GTTGTTGTTGATGATGATTT+TGG | 0.296212 | 5.3:-6873105 | None:intergenic |
| GACCCAACAACAGCCCTTTC+CGG | 0.297991 | 5.3:-6873816 | None:intergenic |
| AGTGTTGAATAACATTATAT+TGG | 0.350775 | 5.3:-6872799 | None:intergenic |
| ACCCAACAACAGCCCTTTCC+GGG | 0.351138 | 5.3:-6873815 | None:intergenic |
| ACAGGTTTAGGTTTATCCTT+TGG | 0.372520 | 5.3:+6873154 | MS.gene21505:CDS |
| GTACCTGGGCTTGAAGGAAT+TGG | 0.377750 | 5.3:-6873312 | None:intergenic |
| GTGGTCCAGACGGTGGAAAT+TGG | 0.378894 | 5.3:+6874479 | MS.gene21505:CDS |
| TTCTTGTCTCTATTGTCAAA+TGG | 0.389193 | 5.3:+6873250 | MS.gene21505:CDS |
| ATAACCCGACTCCGCATCTT+CGG | 0.400338 | 5.3:-6873787 | None:intergenic |
| TGCTTGCCAAAGTTGCGCTT+CGG | 0.419173 | 5.3:-6873631 | None:intergenic |
| AATTGGAATGCGTCTGAGTC+AGG | 0.419686 | 5.3:+6874496 | MS.gene21505:CDS |
| CGAAAGAGAGGAAGAGAAAC+TGG | 0.420853 | 5.3:+6872998 | MS.gene21505:CDS |
| ACCCGGAAAGGGCTGTTGTT+GGG | 0.432638 | 5.3:+6873814 | MS.gene21505:CDS |
| AACATTATATTGGATTGATC+AGG | 0.433881 | 5.3:-6872789 | None:intergenic |
| ATGTAGAGGGTGTGGAGAAC+GGG | 0.433928 | 5.3:+6873848 | MS.gene21505:CDS |
| GGAAAGGGCTGTTGTTGGGT+CGG | 0.444897 | 5.3:+6873818 | MS.gene21505:CDS |
| GAAAGGGCTGTTGTTGGGTC+GGG | 0.447339 | 5.3:+6873819 | MS.gene21505:CDS |
| CGCCGCGCGTGCTTCTAACT+CGG | 0.448530 | 5.3:-6873598 | None:intergenic |
| GTGTGGAGAACGGGTTGCTT+CGG | 0.451385 | 5.3:+6873857 | MS.gene21505:CDS |
| AATCAAAACATTGTTTCTAC+AGG | 0.453764 | 5.3:+6873136 | MS.gene21505:CDS |
| GCATTCCAATTTCCACCGTC+TGG | 0.454829 | 5.3:-6874484 | None:intergenic |
| GACCCGGAAAGGGCTGTTGT+TGG | 0.469508 | 5.3:+6873813 | MS.gene21505:CDS |
| TTAGAACCGAAGCGCAACTT+TGG | 0.471968 | 5.3:+6873625 | MS.gene21505:CDS |
| TGTGGGCTATCATGCGCCTT+AGG | 0.480309 | 5.3:+6873750 | MS.gene21505:CDS |
| ACTGAATGTGACACACGTTT+CGG | 0.491809 | 5.3:+6873915 | MS.gene21505:CDS |
| CATGCCGAAGATGCGGAGTC+GGG | 0.493309 | 5.3:+6873783 | MS.gene21505:CDS |
| GGAGGAGCAGGAGCAGGTTG+TGG | 0.499425 | 5.3:-6872768 | None:intergenic |
| ATCATGCGCCTTAGGTGTTG+AGG | 0.502848 | 5.3:+6873758 | MS.gene21505:CDS |
| AGAATTGTACCTGGGCTTGA+AGG | 0.506941 | 5.3:-6873318 | None:intergenic |
| CGGGTTATATTGACCCGGAA+AGG | 0.509431 | 5.3:+6873802 | MS.gene21505:CDS |
| TTGGATTGATCAGGAGGAGC+AGG | 0.510523 | 5.3:-6872780 | None:intergenic |
| TGATCAGGAGGAGCAGGAGC+AGG | 0.516874 | 5.3:-6872774 | None:intergenic |
| TCATGCCGAAGATGCGGAGT+CGG | 0.518119 | 5.3:+6873782 | MS.gene21505:CDS |
| AATAAAGACAGCTGAGGAAA+CGG | 0.520484 | 5.3:+6873518 | MS.gene21505:CDS |
| ACAAACACACAAATGTCGAC+AGG | 0.528251 | 5.3:-6873892 | None:intergenic |
| AATGTAGAGGGTGTGGAGAA+CGG | 0.529787 | 5.3:+6873847 | MS.gene21505:CDS |
| AAAAGAGACAGAGAAACTAT+CGG | 0.533456 | 5.3:+6873490 | MS.gene21505:CDS |
| GGGTTATATTGACCCGGAAA+GGG | 0.534464 | 5.3:+6873803 | MS.gene21505:CDS |
| CGCCGAGTTAGAAGCACGCG+CGG | 0.542639 | 5.3:+6873596 | MS.gene21505:CDS |
| AAAGAGACAGAGAAACTATC+GGG | 0.543907 | 5.3:+6873491 | MS.gene21505:CDS |
| TCATGCGCCTTAGGTGTTGA+GGG | 0.544240 | 5.3:+6873759 | MS.gene21505:CDS |
| TTGATGTTGTTGATCACCAA+AGG | 0.546227 | 5.3:-6873170 | None:intergenic |
| TGACCAATTCCTTCAAGCCC+AGG | 0.546713 | 5.3:+6873309 | MS.gene21505:CDS |
| GGCGCGTCGATTAAGAGAAA+AGG | 0.547391 | 5.3:+6873542 | MS.gene21505:CDS |
| GGTCCTAAATGTAGAGGGTG+TGG | 0.552367 | 5.3:+6873840 | MS.gene21505:CDS |
| ATAATGTTATTCAACACTAC+AGG | 0.554489 | 5.3:+6872804 | MS.gene21505:CDS |
| TGAGTGAGGTCAATAAGATG+AGG | 0.558875 | 5.3:-6873079 | None:intergenic |
| TTGAGAAAGAGTACATTGGA+AGG | 0.560758 | 5.3:-6872696 | None:intergenic |
| GGCATGACCCTCAACACCTA+AGG | 0.562684 | 5.3:-6873766 | None:intergenic |
| ATTATATTGGATTGATCAGG+AGG | 0.563822 | 5.3:-6872786 | None:intergenic |
| TGTTAATAGGGTGGTCCAGA+CGG | 0.567557 | 5.3:+6874469 | MS.gene21505:intron |
| GGGTCGGGTCCTAAATGTAG+AGG | 0.567735 | 5.3:+6873834 | MS.gene21505:CDS |
| TAACTCGGCGTTCCTGCGCG+TGG | 0.567941 | 5.3:-6873583 | None:intergenic |
| ATTGTTGAGAAAGAGTACAT+TGG | 0.573336 | 5.3:-6872700 | None:intergenic |
| AACAGAGGTGAAAATGAATG+TGG | 0.584438 | 5.3:+6873732 | MS.gene21505:CDS |
| CATCATGCTATGATGAGCGG+TGG | 0.585727 | 5.3:+6873702 | MS.gene21505:CDS |
| ATGCGTCTGAGTCAGGTAAG+TGG | 0.598542 | 5.3:+6874503 | MS.gene21505:CDS |
| GGTGCTAATTCTCGAAAGAG+AGG | 0.618290 | 5.3:+6872986 | MS.gene21505:intron |
| TGAGAAAGAGTACATTGGAA+GGG | 0.618326 | 5.3:-6872695 | None:intergenic |
| ACAGAGGTGAAAATGAATGT+GGG | 0.631574 | 5.3:+6873733 | MS.gene21505:CDS |
| TGAGGGTCATGCCGAAGATG+CGG | 0.634312 | 5.3:+6873776 | MS.gene21505:CDS |
| CTAAGATAAATAAACCTCAA+CGG | 0.643495 | 5.3:-6873973 | None:intergenic |
| CAAACACACAAATGTCGACA+GGG | 0.650904 | 5.3:-6873891 | None:intergenic |
| CAATAGAGACAAGAAATGAG+AGG | 0.651832 | 5.3:-6873242 | None:intergenic |
| GGTCGGGTCCTAAATGTAGA+GGG | 0.654690 | 5.3:+6873835 | MS.gene21505:CDS |
| AAGAGAGGAAGAGAAACTGG+TGG | 0.656034 | 5.3:+6873001 | MS.gene21505:CDS |
| GGCGATAATAAAGACAGCTG+AGG | 0.663123 | 5.3:+6873512 | MS.gene21505:CDS |
| TAATAGGGTGGTCCAGACGG+TGG | 0.665154 | 5.3:+6874472 | MS.gene21505:intron |
| TTTAGGGAGAAGAGTTACAA+CGG | 0.666721 | 5.3:+6873457 | MS.gene21505:intron |
| AAAGACAGCTGAGGAAACGG+TGG | 0.691301 | 5.3:+6873521 | MS.gene21505:CDS |
| GGAGTCGGGTTATATTGACC+CGG | 0.703789 | 5.3:+6873797 | MS.gene21505:CDS |
| AGCGGTGGCGCAGAAAACAG+AGG | 0.713441 | 5.3:+6873717 | MS.gene21505:CDS |
| CTGCATCATGCTATGATGAG+CGG | 0.730133 | 5.3:+6873699 | MS.gene21505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTTTTTTTA+GGG | + | chr5.3:6873441-6873460 | MS.gene21505:intron | 0.0% |
| !!! | TTAATTTTTTTTTTTTTTTT+AGG | + | chr5.3:6873440-6873459 | MS.gene21505:intron | 0.0% |
| !! | AATAAAAAAATTTCATTCTT+TGG | - | chr5.3:6873414-6873433 | None:intergenic | 10.0% |
| !!! | TGGTTTTTTTTTTTTTTTTT+TGG | - | chr5.3:6872912-6872931 | None:intergenic | 10.0% |
| !! | AGCCAAAAATTAAATAAAAA+AGG | + | chr5.3:6874047-6874066 | MS.gene21505:intron | 15.0% |
| !! | GCCAAAAATTAAATAAAAAA+GGG | + | chr5.3:6874048-6874067 | MS.gene21505:intron | 15.0% |
| !!! | AATGATATTTTTTTTTCTTC+AGG | - | chr5.3:6872952-6872971 | None:intergenic | 15.0% |
| !!! | AATTTTTTTGTAGATGAATT+TGG | + | chr5.3:6874387-6874406 | MS.gene21505:intron | 15.0% |
| !!! | ATTTTTTTGTAGATGAATTT+GGG | + | chr5.3:6874388-6874407 | MS.gene21505:intron | 15.0% |
| !!! | TATCATTTTTGATTGAATAT+AGG | + | chr5.3:6872965-6872984 | MS.gene21505:intron | 15.0% |
| !!! | TCCCTTTTTTATTTAATTTT+TGG | - | chr5.3:6874052-6874071 | None:intergenic | 15.0% |
| !! | AAATTCATGATGTTATTGTA+TGG | + | chr5.3:6874259-6874278 | MS.gene21505:intron | 20.0% |
| !! | TAAAAAAAAACAATGACCTA+GGG | + | chr5.3:6874082-6874101 | MS.gene21505:intron | 20.0% |
| !! | TGAATTTAAAAAAGACATCA+AGG | - | chr5.3:6874246-6874265 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAACAATGACCT+AGG | + | chr5.3:6874081-6874100 | MS.gene21505:intron | 20.0% |
| !!! | AGTGTTGAATAACATTATAT+TGG | - | chr5.3:6872802-6872821 | None:intergenic | 20.0% |
| !!! | ATTTTTAACAGTGAAACAAA+CGG | - | chr5.3:6873949-6873968 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTCAGGAATT+TGG | - | chr5.3:6872945-6872964 | None:intergenic | 20.0% |
| ! | AAAAAAAAACAATGACCTAG+GGG | + | chr5.3:6874083-6874102 | MS.gene21505:intron | 25.0% |
| ! | AACATTATATTGGATTGATC+AGG | - | chr5.3:6872792-6872811 | None:intergenic | 25.0% |
| ! | ACACAGAAATTGTTAACATA+TGG | - | chr5.3:6873345-6873364 | None:intergenic | 25.0% |
| ! | ATAATGTTATTCAACACTAC+AGG | + | chr5.3:6872804-6872823 | MS.gene21505:CDS | 25.0% |
| ! | CAAAAAAACTCATATCAACA+AGG | - | chr5.3:6874328-6874347 | None:intergenic | 25.0% |
| ! | CTAAGATAAATAAACCTCAA+CGG | - | chr5.3:6873976-6873995 | None:intergenic | 25.0% |
| ! | CTCTTTCTCAACAATAAAAA+CGG | + | chr5.3:6872708-6872727 | MS.gene21505:CDS | 25.0% |
| ! | TGGAATCTTCTTTGTTAATA+GGG | + | chr5.3:6874457-6874476 | MS.gene21505:intron | 25.0% |
| !! | TTTTCTCTTAGAAAAAAGAG+AGG | - | chr5.3:6872846-6872865 | None:intergenic | 25.0% |
| !! | TTTTTAACAGTGAAACAAAC+GGG | - | chr5.3:6873948-6873967 | None:intergenic | 25.0% |
| !!! | AATCAAAACATTGTTTCTAC+AGG | + | chr5.3:6873136-6873155 | MS.gene21505:CDS | 25.0% |
| !!! | ATATGAGTTTTTTTGCAAGT+AGG | + | chr5.3:6874333-6874352 | MS.gene21505:intron | 25.0% |
| !!! | TTGGTTACATTTTGTTTGAT+TGG | - | chr5.3:6872893-6872912 | None:intergenic | 25.0% |
| AAAAGAGACAGAGAAACTAT+CGG | + | chr5.3:6873490-6873509 | MS.gene21505:CDS | 30.0% | |
| AACAACAACAACAACAACAT+GGG | + | chr5.3:6873212-6873231 | MS.gene21505:CDS | 30.0% | |
| AATAAAAACGGTCAAGAACA+AGG | + | chr5.3:6872720-6872739 | MS.gene21505:CDS | 30.0% | |
| AATCTTCTTTGTTAATAGGG+TGG | + | chr5.3:6874460-6874479 | MS.gene21505:intron | 30.0% | |
| ATGAATTTGGGAAGTGATTT+AGG | + | chr5.3:6874400-6874419 | MS.gene21505:intron | 30.0% | |
| ATTATATTGGATTGATCAGG+AGG | - | chr5.3:6872789-6872808 | None:intergenic | 30.0% | |
| CGTTGAGGTTTATTTATCTT+AGG | + | chr5.3:6873974-6873993 | MS.gene21505:intron | 30.0% | |
| CTGGAATCTTCTTTGTTAAT+AGG | + | chr5.3:6874456-6874475 | MS.gene21505:intron | 30.0% | |
| TGTTAAAAATTCAACCGTTG+AGG | + | chr5.3:6873959-6873978 | MS.gene21505:CDS | 30.0% | |
| TTCTTGTCTCTATTGTCAAA+TGG | + | chr5.3:6873250-6873269 | MS.gene21505:CDS | 30.0% | |
| TTTCTGTGTTACAGTAGAAT+TGG | + | chr5.3:6873356-6873375 | MS.gene21505:intron | 30.0% | |
| ! | ATTGTTGAGAAAGAGTACAT+TGG | - | chr5.3:6872703-6872722 | None:intergenic | 30.0% |
| ! | GCTTCAATAAGATTTTCTAC+TGG | + | chr5.3:6874437-6874456 | MS.gene21505:intron | 30.0% |
| ! | TTACAGTAGAATTGGATTAG+TGG | + | chr5.3:6873364-6873383 | MS.gene21505:intron | 30.0% |
| ! | TTTTAACAGTGAAACAAACG+GGG | - | chr5.3:6873947-6873966 | None:intergenic | 30.0% |
| !! | AACATTGTTTCTACAGGTTT+AGG | + | chr5.3:6873142-6873161 | MS.gene21505:CDS | 30.0% |
| !! | AGGAATTTGGTTTGTTTGAT+TGG | - | chr5.3:6872932-6872951 | None:intergenic | 30.0% |
| !! | TACAGTAGAATTGGATTAGT+GGG | + | chr5.3:6873365-6873384 | MS.gene21505:intron | 30.0% |
| !!! | AGTGGCATTTTTTTGTTGTT+GGG | + | chr5.3:6874138-6874157 | MS.gene21505:intron | 30.0% |
| !!! | GTTGTTGTTGATGATGATTT+TGG | - | chr5.3:6873108-6873127 | None:intergenic | 30.0% |
| !!! | TAGTGGCATTTTTTTGTTGT+TGG | + | chr5.3:6874137-6874156 | MS.gene21505:intron | 30.0% |
| AAAAAATGCCACTATCCATG+TGG | - | chr5.3:6874131-6874150 | None:intergenic | 35.0% | |
| AAAGAGACAGAGAAACTATC+GGG | + | chr5.3:6873491-6873510 | MS.gene21505:CDS | 35.0% | |
| AACAGAGGTGAAAATGAATG+TGG | + | chr5.3:6873732-6873751 | MS.gene21505:CDS | 35.0% | |
| AATAAAGACAGCTGAGGAAA+CGG | + | chr5.3:6873518-6873537 | MS.gene21505:CDS | 35.0% | |
| ACAGAGGTGAAAATGAATGT+GGG | + | chr5.3:6873733-6873752 | MS.gene21505:CDS | 35.0% | |
| ACATATGGAAGAATTGTACC+TGG | - | chr5.3:6873330-6873349 | None:intergenic | 35.0% | |
| CAACAACAACAACAACAACA+TGG | + | chr5.3:6873208-6873227 | MS.gene21505:CDS | 35.0% | |
| CAATAGAGACAAGAAATGAG+AGG | - | chr5.3:6873245-6873264 | None:intergenic | 35.0% | |
| CATATGGAAGAATTGTACCT+GGG | - | chr5.3:6873329-6873348 | None:intergenic | 35.0% | |
| TTGATGTTGTTGATCACCAA+AGG | - | chr5.3:6873173-6873192 | None:intergenic | 35.0% | |
| TTTAGGGAGAAGAGTTACAA+CGG | + | chr5.3:6873457-6873476 | MS.gene21505:intron | 35.0% | |
| ! | ACAGGTTTAGGTTTATCCTT+TGG | + | chr5.3:6873154-6873173 | MS.gene21505:CDS | 35.0% |
| ! | TGAGAAAGAGTACATTGGAA+GGG | - | chr5.3:6872698-6872717 | None:intergenic | 35.0% |
| ! | TTGAGAAAGAGTACATTGGA+AGG | - | chr5.3:6872699-6872718 | None:intergenic | 35.0% |
| !!! | GAGTTTTTTTGCAAGTAGGA+TGG | + | chr5.3:6874337-6874356 | MS.gene21505:intron | 35.0% |
| AAAAAACAATGACCTAGGGG+TGG | + | chr5.3:6874086-6874105 | MS.gene21505:intron | 40.0% | |
| ACAAACACACAAATGTCGAC+AGG | - | chr5.3:6873895-6873914 | None:intergenic | 40.0% | |
| ACTGAATGTGACACACGTTT+CGG | + | chr5.3:6873915-6873934 | MS.gene21505:CDS | 40.0% | |
| CAAACACACAAATGTCGACA+GGG | - | chr5.3:6873894-6873913 | None:intergenic | 40.0% | |
| GTGGATGAATGTACATGTCA+TGG | + | chr5.3:6874105-6874124 | MS.gene21505:intron | 40.0% | |
| TGAGTGAGGTCAATAAGATG+AGG | - | chr5.3:6873082-6873101 | None:intergenic | 40.0% | |
| ! | GGGAAGTGATTTAGGATATG+TGG | + | chr5.3:6874408-6874427 | MS.gene21505:intron | 40.0% |
| ! | TGTTGGGTTCTTCACTCTTT+TGG | + | chr5.3:6874154-6874173 | MS.gene21505:intron | 40.0% |
| !!! | GATGATTTTGGAGTTGAGTG+AGG | - | chr5.3:6873096-6873115 | None:intergenic | 40.0% |
| AAGAGAGGAAGAGAAACTGG+TGG | + | chr5.3:6873001-6873020 | MS.gene21505:CDS | 45.0% | |
| AATTGGAATGCGTCTGAGTC+AGG | + | chr5.3:6874496-6874515 | MS.gene21505:CDS | 45.0% | |
| AGAATTGTACCTGGGCTTGA+AGG | - | chr5.3:6873321-6873340 | None:intergenic | 45.0% | |
| ATGTACATGTCATGGCCACA+TGG | + | chr5.3:6874113-6874132 | MS.gene21505:intron | 45.0% | |
| ATGTACATTCATCCACCCCT+AGG | - | chr5.3:6874101-6874120 | None:intergenic | 45.0% | |
| ATTTACAAAAAGCCACGCGC+AGG | + | chr5.3:6873571-6873590 | MS.gene21505:CDS | 45.0% | |
| CGAAAGAGAGGAAGAGAAAC+TGG | + | chr5.3:6872998-6873017 | MS.gene21505:CDS | 45.0% | |
| CTGCATCATGCTATGATGAG+CGG | + | chr5.3:6873699-6873718 | MS.gene21505:CDS | 45.0% | |
| GGCGATAATAAAGACAGCTG+AGG | + | chr5.3:6873512-6873531 | MS.gene21505:CDS | 45.0% | |
| GGGTTATATTGACCCGGAAA+GGG | + | chr5.3:6873803-6873822 | MS.gene21505:CDS | 45.0% | |
| GGTGCTAATTCTCGAAAGAG+AGG | + | chr5.3:6872986-6873005 | MS.gene21505:intron | 45.0% | |
| TCTCCACACCCTCTACATTT+AGG | - | chr5.3:6873846-6873865 | None:intergenic | 45.0% | |
| TGTTAATAGGGTGGTCCAGA+CGG | + | chr5.3:6874469-6874488 | MS.gene21505:intron | 45.0% | |
| TTAGAACCGAAGCGCAACTT+TGG | + | chr5.3:6873625-6873644 | MS.gene21505:CDS | 45.0% | |
| ! | AATGTAGAGGGTGTGGAGAA+CGG | + | chr5.3:6873847-6873866 | MS.gene21505:CDS | 45.0% |
| AAAGACAGCTGAGGAAACGG+TGG | + | chr5.3:6873521-6873540 | MS.gene21505:CDS | 50.0% | |
| ATAACCCGACTCCGCATCTT+CGG | - | chr5.3:6873790-6873809 | None:intergenic | 50.0% | |
| ATGCGTCTGAGTCAGGTAAG+TGG | + | chr5.3:6874503-6874522 | MS.gene21505:CDS | 50.0% | |
| CATCATGCTATGATGAGCGG+TGG | + | chr5.3:6873702-6873721 | MS.gene21505:CDS | 50.0% | |
| CGGGTTATATTGACCCGGAA+AGG | + | chr5.3:6873802-6873821 | MS.gene21505:CDS | 50.0% | |
| GCATTCCAATTTCCACCGTC+TGG | - | chr5.3:6874487-6874506 | None:intergenic | 50.0% | |
| GGAGTCGGGTTATATTGACC+CGG | + | chr5.3:6873797-6873816 | MS.gene21505:CDS | 50.0% | |
| GGTCCTAAATGTAGAGGGTG+TGG | + | chr5.3:6873840-6873859 | MS.gene21505:CDS | 50.0% | |
| GGTCGGGTCCTAAATGTAGA+GGG | + | chr5.3:6873835-6873854 | MS.gene21505:CDS | 50.0% | |
| GTACCTGGGCTTGAAGGAAT+TGG | - | chr5.3:6873315-6873334 | None:intergenic | 50.0% | |
| TGACCAATTCCTTCAAGCCC+AGG | + | chr5.3:6873309-6873328 | MS.gene21505:CDS | 50.0% | |
| TGCTTGCCAAAGTTGCGCTT+CGG | - | chr5.3:6873634-6873653 | None:intergenic | 50.0% | |
| TGTCATGGCCACATGGATAG+TGG | + | chr5.3:6874120-6874139 | MS.gene21505:intron | 50.0% | |
| TTGGATTGATCAGGAGGAGC+AGG | - | chr5.3:6872783-6872802 | None:intergenic | 50.0% | |
| ! | ATCATGCGCCTTAGGTGTTG+AGG | + | chr5.3:6873758-6873777 | MS.gene21505:CDS | 50.0% |
| ! | ATGTAGAGGGTGTGGAGAAC+GGG | + | chr5.3:6873848-6873867 | MS.gene21505:CDS | 50.0% |
| ! | GGATGGATGCTTGTTGCACA+AGG | + | chr5.3:6874354-6874373 | MS.gene21505:intron | 50.0% |
| !! | GGCGCGTCGATTAAGAGAAA+AGG | + | chr5.3:6873542-6873561 | MS.gene21505:CDS | 50.0% |
| !! | TCATGCGCCTTAGGTGTTGA+GGG | + | chr5.3:6873759-6873778 | MS.gene21505:CDS | 50.0% |
| ACCCAACAACAGCCCTTTCC+GGG | - | chr5.3:6873818-6873837 | None:intergenic | 55.0% | |
| ACCCGGAAAGGGCTGTTGTT+GGG | + | chr5.3:6873814-6873833 | MS.gene21505:CDS | 55.0% | |
| GAAAGGGCTGTTGTTGGGTC+GGG | + | chr5.3:6873819-6873838 | MS.gene21505:CDS | 55.0% | |
| GACCCAACAACAGCCCTTTC+CGG | - | chr5.3:6873819-6873838 | None:intergenic | 55.0% | |
| GGAAAGGGCTGTTGTTGGGT+CGG | + | chr5.3:6873818-6873837 | MS.gene21505:CDS | 55.0% | |
| GGCATGACCCTCAACACCTA+AGG | - | chr5.3:6873769-6873788 | None:intergenic | 55.0% | |
| GGGTCGGGTCCTAAATGTAG+AGG | + | chr5.3:6873834-6873853 | MS.gene21505:CDS | 55.0% | |
| GTGGTCCAGACGGTGGAAAT+TGG | + | chr5.3:6874479-6874498 | MS.gene21505:CDS | 55.0% | |
| TAATAGGGTGGTCCAGACGG+TGG | + | chr5.3:6874472-6874491 | MS.gene21505:intron | 55.0% | |
| TCATGCCGAAGATGCGGAGT+CGG | + | chr5.3:6873782-6873801 | MS.gene21505:CDS | 55.0% | |
| TGAGGGTCATGCCGAAGATG+CGG | + | chr5.3:6873776-6873795 | MS.gene21505:CDS | 55.0% | |
| ! | TGTGGGCTATCATGCGCCTT+AGG | + | chr5.3:6873750-6873769 | MS.gene21505:CDS | 55.0% |
| !! | GTGTGGAGAACGGGTTGCTT+CGG | + | chr5.3:6873857-6873876 | MS.gene21505:CDS | 55.0% |
| AGCGGTGGCGCAGAAAACAG+AGG | + | chr5.3:6873717-6873736 | MS.gene21505:CDS | 60.0% | |
| CATGCCGAAGATGCGGAGTC+GGG | + | chr5.3:6873783-6873802 | MS.gene21505:CDS | 60.0% | |
| GACCCGGAAAGGGCTGTTGT+TGG | + | chr5.3:6873813-6873832 | MS.gene21505:CDS | 60.0% | |
| TGATCAGGAGGAGCAGGAGC+AGG | - | chr5.3:6872777-6872796 | None:intergenic | 60.0% | |
| CGCCGCGCGTGCTTCTAACT+CGG | - | chr5.3:6873601-6873620 | None:intergenic | 65.0% | |
| GGAGGAGCAGGAGCAGGTTG+TGG | - | chr5.3:6872771-6872790 | None:intergenic | 65.0% | |
| TAACTCGGCGTTCCTGCGCG+TGG | - | chr5.3:6873586-6873605 | None:intergenic | 65.0% | |
| ! | CGCCGAGTTAGAAGCACGCG+CGG | + | chr5.3:6873596-6873615 | MS.gene21505:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6872675 | 6874573 | 6872675 | ID=MS.gene21505 |
| chr5.3 | mRNA | 6872675 | 6874573 | 6872675 | ID=MS.gene21505.t1;Parent=MS.gene21505 |
| chr5.3 | exon | 6872675 | 6872825 | 6872675 | ID=MS.gene21505.t1.exon1;Parent=MS.gene21505.t1 |
| chr5.3 | CDS | 6872675 | 6872825 | 6872675 | ID=cds.MS.gene21505.t1;Parent=MS.gene21505.t1 |
| chr5.3 | exon | 6872987 | 6873330 | 6872987 | ID=MS.gene21505.t1.exon2;Parent=MS.gene21505.t1 |
| chr5.3 | CDS | 6872987 | 6873330 | 6872987 | ID=cds.MS.gene21505.t1;Parent=MS.gene21505.t1 |
| chr5.3 | exon | 6873462 | 6873980 | 6873462 | ID=MS.gene21505.t1.exon3;Parent=MS.gene21505.t1 |
| chr5.3 | CDS | 6873462 | 6873980 | 6873462 | ID=cds.MS.gene21505.t1;Parent=MS.gene21505.t1 |
| chr5.3 | exon | 6874478 | 6874573 | 6874478 | ID=MS.gene21505.t1.exon4;Parent=MS.gene21505.t1 |
| chr5.3 | CDS | 6874478 | 6874573 | 6874478 | ID=cds.MS.gene21505.t1;Parent=MS.gene21505.t1 |
| Gene Sequence |
| Protein sequence |
