Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54205.t1 | XP_003611413.1 | 88.8 | 347 | 21 | 8 | 1 | 341 | 1 | 335 | 2.80E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54205.t1 | O81851 | 35.7 | 213 | 112 | 5 | 140 | 341 | 105 | 303 | 9.9e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54205.t1 | G7JYN7 | 88.8 | 347 | 21 | 8 | 1 | 341 | 1 | 335 | 2.0e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54205 | MS.gene46379 | PPI |
| MS.gene54205 | MS.gene72389 | PPI |
| MS.gene54205 | MS.gene61244 | PPI |
| MS.gene54205 | MS.gene011617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54205.t1 | MTR_5g013690 | 91.066 | 347 | 13 | 9 | 1 | 341 | 1 | 335 | 0.0 | 570 |
| MS.gene54205.t1 | MTR_5g013690 | 96.416 | 279 | 3 | 3 | 63 | 341 | 1 | 272 | 0.0 | 537 |
| MS.gene54205.t1 | MTR_4g099060 | 57.790 | 353 | 115 | 9 | 1 | 341 | 1 | 331 | 6.74e-98 | 293 |
| MS.gene54205.t1 | MTR_4g099060 | 61.538 | 299 | 90 | 7 | 49 | 341 | 7 | 286 | 3.25e-95 | 285 |
| MS.gene54205.t1 | MTR_1g019250 | 27.429 | 350 | 204 | 7 | 2 | 340 | 30 | 340 | 3.17e-33 | 126 |
| MS.gene54205.t1 | MTR_2g069350 | 31.746 | 252 | 133 | 6 | 126 | 341 | 118 | 366 | 1.56e-29 | 116 |
| MS.gene54205.t1 | MTR_4g083540 | 32.512 | 203 | 129 | 4 | 140 | 341 | 98 | 293 | 1.44e-28 | 112 |
| MS.gene54205.t1 | MTR_3g117970 | 35.450 | 189 | 97 | 5 | 152 | 340 | 32 | 195 | 2.78e-25 | 101 |
| MS.gene54205.t1 | MTR_2g028830 | 32.843 | 204 | 115 | 5 | 149 | 341 | 127 | 319 | 3.99e-25 | 103 |
| MS.gene54205.t1 | MTR_4g036485 | 27.835 | 194 | 126 | 2 | 145 | 338 | 30 | 209 | 1.89e-23 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54205.t1 | AT1G32740 | 43.103 | 348 | 153 | 13 | 1 | 340 | 1 | 311 | 3.30e-78 | 242 |
| MS.gene54205.t1 | AT1G32740 | 41.867 | 332 | 149 | 12 | 16 | 340 | 6 | 300 | 1.72e-71 | 224 |
| MS.gene54205.t1 | AT5G47050 | 41.643 | 353 | 141 | 13 | 1 | 341 | 1 | 300 | 3.34e-68 | 216 |
| MS.gene54205.t1 | AT4G17680 | 40.988 | 344 | 152 | 12 | 1 | 340 | 18 | 314 | 9.42e-65 | 207 |
| MS.gene54205.t1 | AT1G32740 | 41.472 | 299 | 135 | 9 | 47 | 340 | 4 | 267 | 1.85e-64 | 205 |
| MS.gene54205.t1 | AT1G32740 | 41.472 | 299 | 135 | 9 | 47 | 340 | 4 | 267 | 1.85e-64 | 205 |
| MS.gene54205.t1 | AT4G17680 | 41.985 | 262 | 118 | 7 | 83 | 340 | 11 | 242 | 4.78e-52 | 172 |
| MS.gene54205.t1 | AT4G17680 | 46.196 | 184 | 89 | 4 | 161 | 340 | 13 | 190 | 5.70e-42 | 145 |
| MS.gene54205.t1 | AT1G10650 | 30.645 | 248 | 154 | 4 | 103 | 341 | 45 | 283 | 2.07e-37 | 135 |
| MS.gene54205.t1 | AT1G10650 | 30.645 | 248 | 154 | 4 | 103 | 341 | 101 | 339 | 3.19e-37 | 136 |
| MS.gene54205.t1 | AT1G60610 | 28.025 | 314 | 180 | 9 | 42 | 340 | 57 | 339 | 2.48e-34 | 129 |
| MS.gene54205.t1 | AT1G60610 | 28.025 | 314 | 180 | 9 | 42 | 340 | 57 | 339 | 2.48e-34 | 129 |
| MS.gene54205.t1 | AT1G60610 | 28.025 | 314 | 180 | 9 | 42 | 340 | 57 | 339 | 2.48e-34 | 129 |
| MS.gene54205.t1 | AT1G60610 | 28.025 | 314 | 180 | 9 | 42 | 340 | 57 | 339 | 2.48e-34 | 129 |
| MS.gene54205.t1 | AT1G60610 | 28.025 | 314 | 180 | 9 | 42 | 340 | 57 | 339 | 2.48e-34 | 129 |
| MS.gene54205.t1 | AT1G45976 | 31.646 | 237 | 139 | 4 | 106 | 340 | 110 | 325 | 4.43e-31 | 120 |
| MS.gene54205.t1 | AT4G19700 | 35.266 | 207 | 121 | 4 | 140 | 341 | 105 | 303 | 4.06e-28 | 111 |
| MS.gene54205.t1 | AT1G79110 | 33.790 | 219 | 113 | 4 | 146 | 341 | 123 | 332 | 5.69e-28 | 111 |
| MS.gene54205.t1 | AT1G79110 | 33.790 | 219 | 113 | 4 | 146 | 341 | 145 | 354 | 5.82e-28 | 112 |
| MS.gene54205.t1 | AT1G79110 | 33.784 | 222 | 112 | 5 | 146 | 341 | 145 | 357 | 1.20e-26 | 108 |
| MS.gene54205.t1 | AT4G35070 | 32.178 | 202 | 119 | 2 | 146 | 340 | 74 | 264 | 7.14e-26 | 104 |
| MS.gene54205.t1 | AT5G45100 | 34.597 | 211 | 116 | 6 | 140 | 341 | 69 | 266 | 1.63e-25 | 103 |
| MS.gene54205.t1 | AT4G35070 | 34.826 | 201 | 115 | 6 | 146 | 340 | 19 | 209 | 2.02e-25 | 102 |
| MS.gene54205.t1 | AT5G45100 | 34.597 | 211 | 116 | 6 | 140 | 341 | 96 | 293 | 2.39e-25 | 103 |
| MS.gene54205.t1 | AT3G12920 | 29.108 | 213 | 140 | 3 | 139 | 341 | 123 | 334 | 2.41e-24 | 102 |
Find 69 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCACACCCTCTACATTT+AGG | 0.264445 | 5.1:-6623703 | None:intergenic |
| AACATTGTTTCTACAGGTTT+AGG | 0.285796 | 5.1:+6623009 | MS.gene54205:CDS |
| CGTTGAGGTTTATTTATCTT+AGG | 0.288134 | 5.1:+6623834 | MS.gene54205:CDS |
| GTTGTTGTTGATGATGATTT+TGG | 0.296212 | 5.1:-6622966 | None:intergenic |
| GACCCAACAACAGCCCTTTC+CGG | 0.297991 | 5.1:-6623676 | None:intergenic |
| AGTGTTGAATAACATTATAT+TGG | 0.350775 | 5.1:-6622696 | None:intergenic |
| ACCCAACAACAGCCCTTTCC+GGG | 0.351138 | 5.1:-6623675 | None:intergenic |
| ACAGGTTTAGGTTTATCCTT+TGG | 0.372520 | 5.1:+6623021 | MS.gene54205:CDS |
| GTACCTGGGCTTGAAGGAAT+TGG | 0.377750 | 5.1:-6623173 | None:intergenic |
| ATAACCCGACTCCGCATCTT+CGG | 0.400338 | 5.1:-6623647 | None:intergenic |
| CGAAAGAGAGGAAGAGAAAC+TGG | 0.420853 | 5.1:+6622856 | MS.gene54205:CDS |
| ACCCGGAAAGGGCTGTTGTT+GGG | 0.432638 | 5.1:+6623674 | MS.gene54205:CDS |
| AACATTATATTGGATTGATC+AGG | 0.433881 | 5.1:-6622686 | None:intergenic |
| ATGTAGAGGGTGTGGAGAAC+GGG | 0.433928 | 5.1:+6623708 | MS.gene54205:CDS |
| GGAAAGGGCTGTTGTTGGGT+CGG | 0.444897 | 5.1:+6623678 | MS.gene54205:CDS |
| GAAAGGGCTGTTGTTGGGTC+GGG | 0.447339 | 5.1:+6623679 | MS.gene54205:CDS |
| CGCCGCGCGTGCTTCTAACT+CGG | 0.448530 | 5.1:-6623458 | None:intergenic |
| GTGTGGAGAACGGGTTGCTT+CGG | 0.451385 | 5.1:+6623717 | MS.gene54205:CDS |
| AATCAAAACATTGTTTCTAC+AGG | 0.453764 | 5.1:+6623003 | MS.gene54205:CDS |
| TTCTTGTCACTATTGTCAAA+TGG | 0.458322 | 5.1:+6623111 | MS.gene54205:CDS |
| GACCCGGAAAGGGCTGTTGT+TGG | 0.469508 | 5.1:+6623673 | MS.gene54205:CDS |
| TGATCAGGAGGAGCAGGTTG+TGG | 0.486733 | 5.1:-6622671 | None:intergenic |
| TTGGATTGATCAGGAGGAGC+AGG | 0.488786 | 5.1:-6622677 | None:intergenic |
| TTAGAAACGAAGCACAACTT+TGG | 0.491522 | 5.1:+6623485 | MS.gene54205:CDS |
| ACTGAATGTGACACACGTTT+CGG | 0.491809 | 5.1:+6623775 | MS.gene54205:CDS |
| CATGCCGAAGATGCGGAGTC+GGG | 0.493309 | 5.1:+6623643 | MS.gene54205:CDS |
| ATCATGCGCCCTAGGTGTTG+AGG | 0.494477 | 5.1:+6623618 | MS.gene54205:CDS |
| AGAATTGTACCTGGGCTTGA+AGG | 0.506941 | 5.1:-6623179 | None:intergenic |
| TCATGCGCCCTAGGTGTTGA+GGG | 0.508555 | 5.1:+6623619 | MS.gene54205:CDS |
| CGGGTTATATTGACCCGGAA+AGG | 0.509431 | 5.1:+6623662 | MS.gene54205:CDS |
| TCATGCCGAAGATGCGGAGT+CGG | 0.518119 | 5.1:+6623642 | MS.gene54205:CDS |
| AATAAAGACAGCTGAGGAAA+CGG | 0.520484 | 5.1:+6623378 | MS.gene54205:CDS |
| ACAAACACACAAATGTCGAC+AGG | 0.528251 | 5.1:-6623752 | None:intergenic |
| AATGTAGAGGGTGTGGAGAA+CGG | 0.529787 | 5.1:+6623707 | MS.gene54205:CDS |
| AAAAGAGACAGAGAAACTAT+CGG | 0.533456 | 5.1:+6623350 | MS.gene54205:CDS |
| GGGTTATATTGACCCGGAAA+GGG | 0.534464 | 5.1:+6623663 | MS.gene54205:CDS |
| TAACTCGGCGTTTCTGCGCG+TGG | 0.542104 | 5.1:-6623443 | None:intergenic |
| CGCCGAGTTAGAAGCACGCG+CGG | 0.542639 | 5.1:+6623456 | MS.gene54205:CDS |
| AAAGAGACAGAGAAACTATC+GGG | 0.543907 | 5.1:+6623351 | MS.gene54205:CDS |
| TTGATGTTGTTGATCACCAA+AGG | 0.546227 | 5.1:-6623037 | None:intergenic |
| TGACCAATTCCTTCAAGCCC+AGG | 0.546713 | 5.1:+6623170 | MS.gene54205:CDS |
| GGCGCGTCGATTAAGAGAAA+AGG | 0.547391 | 5.1:+6623402 | MS.gene54205:CDS |
| CGGCATGACCCTCAACACCT+AGG | 0.548895 | 5.1:-6623627 | None:intergenic |
| GGCATGACCCTCAACACCTA+GGG | 0.550941 | 5.1:-6623626 | None:intergenic |
| GGTCCTAAATGTAGAGGGTG+TGG | 0.552367 | 5.1:+6623700 | MS.gene54205:CDS |
| ATAATGTTATTCAACACTAC+AGG | 0.554489 | 5.1:+6622701 | MS.gene54205:CDS |
| TTGAGAAAGAGTACATTGGA+AGG | 0.560758 | 5.1:-6622599 | None:intergenic |
| ATTATATTGGATTGATCAGG+AGG | 0.563822 | 5.1:-6622683 | None:intergenic |
| GGGTCGGGTCCTAAATGTAG+AGG | 0.567735 | 5.1:+6623694 | MS.gene54205:CDS |
| ATTGTTGAGAAAGAGTACAT+TGG | 0.573336 | 5.1:-6622603 | None:intergenic |
| TGTGGGCTATCATGCGCCCT+AGG | 0.576065 | 5.1:+6623610 | MS.gene54205:CDS |
| AACAGAGGTGAAAATGAATG+TGG | 0.584438 | 5.1:+6623592 | MS.gene54205:CDS |
| CATCATGCTATGATGAGCGG+TGG | 0.585727 | 5.1:+6623562 | MS.gene54205:CDS |
| TGAGTGAGATCAATAAGATG+AGG | 0.596072 | 5.1:-6622940 | None:intergenic |
| GGTGCTAATTCTCGAAAGAG+AGG | 0.618290 | 5.1:+6622844 | MS.gene54205:intron |
| TGAGAAAGAGTACATTGGAA+GGG | 0.618326 | 5.1:-6622598 | None:intergenic |
| ACAGAGGTGAAAATGAATGT+GGG | 0.631574 | 5.1:+6623593 | MS.gene54205:CDS |
| TGAGGGTCATGCCGAAGATG+CGG | 0.634312 | 5.1:+6623636 | MS.gene54205:CDS |
| CTAAGATAAATAAACCTCAA+CGG | 0.643495 | 5.1:-6623833 | None:intergenic |
| CAATAGTGACAAGAAATGAG+AGG | 0.649803 | 5.1:-6623103 | None:intergenic |
| CAAACACACAAATGTCGACA+GGG | 0.650904 | 5.1:-6623751 | None:intergenic |
| GGTCGGGTCCTAAATGTAGA+GGG | 0.654690 | 5.1:+6623695 | MS.gene54205:CDS |
| AAGAGAGGAAGAGAAACTGG+TGG | 0.656034 | 5.1:+6622859 | MS.gene54205:CDS |
| GGCGATAATAAAGACAGCTG+AGG | 0.663123 | 5.1:+6623372 | MS.gene54205:CDS |
| TTTAGGGAGAAGAGTTACAA+CGG | 0.666721 | 5.1:+6623317 | MS.gene54205:intron |
| AAAGACAGCTGAGGAAACGG+TGG | 0.691301 | 5.1:+6623381 | MS.gene54205:CDS |
| GGAGTCGGGTTATATTGACC+CGG | 0.703789 | 5.1:+6623657 | MS.gene54205:CDS |
| AGCGGTGGCGCAGAAAACAG+AGG | 0.713441 | 5.1:+6623577 | MS.gene54205:CDS |
| CTGCATCATGCTATGATGAG+CGG | 0.730133 | 5.1:+6623559 | MS.gene54205:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTTTTTTTTTTTA+GGG | + | chr5.1:6623301-6623320 | MS.gene54205:intron | 0.0% |
| !!! | TTTAATTATTTTTTTTTTTT+AGG | + | chr5.1:6623300-6623319 | MS.gene54205:intron | 0.0% |
| !! | AATAAAAAAATTTCATTCTT+TGG | - | chr5.1:6623275-6623294 | None:intergenic | 10.0% |
| !!! | AATGATATTTTTTTTTCTTC+AGG | - | chr5.1:6622810-6622829 | None:intergenic | 15.0% |
| !!! | TATCATTTTTGATTGAATAT+AGG | + | chr5.1:6622823-6622842 | MS.gene54205:intron | 15.0% |
| !!! | AGTGTTGAATAACATTATAT+TGG | - | chr5.1:6622699-6622718 | None:intergenic | 20.0% |
| !!! | ATTTTTAACAGTGAAACAAA+CGG | - | chr5.1:6623809-6623828 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTCAGGAATT+TGG | - | chr5.1:6622803-6622822 | None:intergenic | 20.0% |
| ! | AACATTATATTGGATTGATC+AGG | - | chr5.1:6622689-6622708 | None:intergenic | 25.0% |
| ! | ACACAGAAATTGTTAACATA+TGG | - | chr5.1:6623206-6623225 | None:intergenic | 25.0% |
| ! | ATAATGTTATTCAACACTAC+AGG | + | chr5.1:6622701-6622720 | MS.gene54205:CDS | 25.0% |
| ! | CTAAGATAAATAAACCTCAA+CGG | - | chr5.1:6623836-6623855 | None:intergenic | 25.0% |
| ! | CTCTTTCTCAACAATAAAAA+CGG | + | chr5.1:6622611-6622630 | MS.gene54205:CDS | 25.0% |
| !! | TTTTCTCTTAGAAAAAAGAG+AGG | - | chr5.1:6622743-6622762 | None:intergenic | 25.0% |
| !! | TTTTTAACAGTGAAACAAAC+GGG | - | chr5.1:6623808-6623827 | None:intergenic | 25.0% |
| !!! | AATCAAAACATTGTTTCTAC+AGG | + | chr5.1:6623003-6623022 | MS.gene54205:CDS | 25.0% |
| AAAAGAGACAGAGAAACTAT+CGG | + | chr5.1:6623350-6623369 | MS.gene54205:CDS | 30.0% | |
| AATAAAAACGGTCAAGAACA+AGG | + | chr5.1:6622623-6622642 | MS.gene54205:CDS | 30.0% | |
| ATTATATTGGATTGATCAGG+AGG | - | chr5.1:6622686-6622705 | None:intergenic | 30.0% | |
| TACAACAACAACAACAACAT+GGG | + | chr5.1:6623073-6623092 | MS.gene54205:CDS | 30.0% | |
| TGTTAAAAATTCAACCGTTG+AGG | + | chr5.1:6623819-6623838 | MS.gene54205:CDS | 30.0% | |
| TTCTTGTCACTATTGTCAAA+TGG | + | chr5.1:6623111-6623130 | MS.gene54205:CDS | 30.0% | |
| TTTCTGTGTTACAGTAGAAT+TGG | + | chr5.1:6623217-6623236 | MS.gene54205:intron | 30.0% | |
| ! | ATTGTTGAGAAAGAGTACAT+TGG | - | chr5.1:6622606-6622625 | None:intergenic | 30.0% |
| ! | TTACAGTAGAATTGGATTAG+TGG | + | chr5.1:6623225-6623244 | MS.gene54205:intron | 30.0% |
| ! | TTTTAACAGTGAAACAAACG+GGG | - | chr5.1:6623807-6623826 | None:intergenic | 30.0% |
| !! | AACATTGTTTCTACAGGTTT+AGG | + | chr5.1:6623009-6623028 | MS.gene54205:CDS | 30.0% |
| !! | AGGAATTTGGTTTGTTTGAT+TGG | - | chr5.1:6622790-6622809 | None:intergenic | 30.0% |
| !! | TACAGTAGAATTGGATTAGT+GGG | + | chr5.1:6623226-6623245 | MS.gene54205:intron | 30.0% |
| !!! | GTTGTTGTTGATGATGATTT+TGG | - | chr5.1:6622969-6622988 | None:intergenic | 30.0% |
| AAAGAGACAGAGAAACTATC+GGG | + | chr5.1:6623351-6623370 | MS.gene54205:CDS | 35.0% | |
| AACAGAGGTGAAAATGAATG+TGG | + | chr5.1:6623592-6623611 | MS.gene54205:CDS | 35.0% | |
| AATAAAGACAGCTGAGGAAA+CGG | + | chr5.1:6623378-6623397 | MS.gene54205:CDS | 35.0% | |
| ACAGAGGTGAAAATGAATGT+GGG | + | chr5.1:6623593-6623612 | MS.gene54205:CDS | 35.0% | |
| ACATATGGAAGAATTGTACC+TGG | - | chr5.1:6623191-6623210 | None:intergenic | 35.0% | |
| CAATAGTGACAAGAAATGAG+AGG | - | chr5.1:6623106-6623125 | None:intergenic | 35.0% | |
| CATATGGAAGAATTGTACCT+GGG | - | chr5.1:6623190-6623209 | None:intergenic | 35.0% | |
| CTACAACAACAACAACAACA+TGG | + | chr5.1:6623072-6623091 | MS.gene54205:CDS | 35.0% | |
| TGAGTGAGATCAATAAGATG+AGG | - | chr5.1:6622943-6622962 | None:intergenic | 35.0% | |
| TTAGAAACGAAGCACAACTT+TGG | + | chr5.1:6623485-6623504 | MS.gene54205:CDS | 35.0% | |
| TTGATGTTGTTGATCACCAA+AGG | - | chr5.1:6623040-6623059 | None:intergenic | 35.0% | |
| TTTAGGGAGAAGAGTTACAA+CGG | + | chr5.1:6623317-6623336 | MS.gene54205:intron | 35.0% | |
| ! | ACAGGTTTAGGTTTATCCTT+TGG | + | chr5.1:6623021-6623040 | MS.gene54205:CDS | 35.0% |
| ! | TGAGAAAGAGTACATTGGAA+GGG | - | chr5.1:6622601-6622620 | None:intergenic | 35.0% |
| ! | TTGAGAAAGAGTACATTGGA+AGG | - | chr5.1:6622602-6622621 | None:intergenic | 35.0% |
| ACAAACACACAAATGTCGAC+AGG | - | chr5.1:6623755-6623774 | None:intergenic | 40.0% | |
| ACTGAATGTGACACACGTTT+CGG | + | chr5.1:6623775-6623794 | MS.gene54205:CDS | 40.0% | |
| CAAACACACAAATGTCGACA+GGG | - | chr5.1:6623754-6623773 | None:intergenic | 40.0% | |
| AAGAGAGGAAGAGAAACTGG+TGG | + | chr5.1:6622859-6622878 | MS.gene54205:CDS | 45.0% | |
| AGAATTGTACCTGGGCTTGA+AGG | - | chr5.1:6623182-6623201 | None:intergenic | 45.0% | |
| CGAAAGAGAGGAAGAGAAAC+TGG | + | chr5.1:6622856-6622875 | MS.gene54205:CDS | 45.0% | |
| CTGCATCATGCTATGATGAG+CGG | + | chr5.1:6623559-6623578 | MS.gene54205:CDS | 45.0% | |
| GGCGATAATAAAGACAGCTG+AGG | + | chr5.1:6623372-6623391 | MS.gene54205:CDS | 45.0% | |
| GGGTTATATTGACCCGGAAA+GGG | + | chr5.1:6623663-6623682 | MS.gene54205:CDS | 45.0% | |
| GGTGCTAATTCTCGAAAGAG+AGG | + | chr5.1:6622844-6622863 | MS.gene54205:intron | 45.0% | |
| TCTCCACACCCTCTACATTT+AGG | - | chr5.1:6623706-6623725 | None:intergenic | 45.0% | |
| ! | AATGTAGAGGGTGTGGAGAA+CGG | + | chr5.1:6623707-6623726 | MS.gene54205:CDS | 45.0% |
| AAAGACAGCTGAGGAAACGG+TGG | + | chr5.1:6623381-6623400 | MS.gene54205:CDS | 50.0% | |
| ATAACCCGACTCCGCATCTT+CGG | - | chr5.1:6623650-6623669 | None:intergenic | 50.0% | |
| CATCATGCTATGATGAGCGG+TGG | + | chr5.1:6623562-6623581 | MS.gene54205:CDS | 50.0% | |
| CGGGTTATATTGACCCGGAA+AGG | + | chr5.1:6623662-6623681 | MS.gene54205:CDS | 50.0% | |
| GGAGTCGGGTTATATTGACC+CGG | + | chr5.1:6623657-6623676 | MS.gene54205:CDS | 50.0% | |
| GGTCCTAAATGTAGAGGGTG+TGG | + | chr5.1:6623700-6623719 | MS.gene54205:CDS | 50.0% | |
| GGTCGGGTCCTAAATGTAGA+GGG | + | chr5.1:6623695-6623714 | MS.gene54205:CDS | 50.0% | |
| GTACCTGGGCTTGAAGGAAT+TGG | - | chr5.1:6623176-6623195 | None:intergenic | 50.0% | |
| TGACCAATTCCTTCAAGCCC+AGG | + | chr5.1:6623170-6623189 | MS.gene54205:CDS | 50.0% | |
| TTGGATTGATCAGGAGGAGC+AGG | - | chr5.1:6622680-6622699 | None:intergenic | 50.0% | |
| ! | ATGTAGAGGGTGTGGAGAAC+GGG | + | chr5.1:6623708-6623727 | MS.gene54205:CDS | 50.0% |
| !! | GGCGCGTCGATTAAGAGAAA+AGG | + | chr5.1:6623402-6623421 | MS.gene54205:CDS | 50.0% |
| ACCCAACAACAGCCCTTTCC+GGG | - | chr5.1:6623678-6623697 | None:intergenic | 55.0% | |
| ACCCGGAAAGGGCTGTTGTT+GGG | + | chr5.1:6623674-6623693 | MS.gene54205:CDS | 55.0% | |
| GAAAGGGCTGTTGTTGGGTC+GGG | + | chr5.1:6623679-6623698 | MS.gene54205:CDS | 55.0% | |
| GACCCAACAACAGCCCTTTC+CGG | - | chr5.1:6623679-6623698 | None:intergenic | 55.0% | |
| GGAAAGGGCTGTTGTTGGGT+CGG | + | chr5.1:6623678-6623697 | MS.gene54205:CDS | 55.0% | |
| GGCATGACCCTCAACACCTA+GGG | - | chr5.1:6623629-6623648 | None:intergenic | 55.0% | |
| GGGTCGGGTCCTAAATGTAG+AGG | + | chr5.1:6623694-6623713 | MS.gene54205:CDS | 55.0% | |
| TCATGCCGAAGATGCGGAGT+CGG | + | chr5.1:6623642-6623661 | MS.gene54205:CDS | 55.0% | |
| TGAGGGTCATGCCGAAGATG+CGG | + | chr5.1:6623636-6623655 | MS.gene54205:CDS | 55.0% | |
| TGATCAGGAGGAGCAGGTTG+TGG | - | chr5.1:6622674-6622693 | None:intergenic | 55.0% | |
| ! | ATCATGCGCCCTAGGTGTTG+AGG | + | chr5.1:6623618-6623637 | MS.gene54205:CDS | 55.0% |
| !! | GTGTGGAGAACGGGTTGCTT+CGG | + | chr5.1:6623717-6623736 | MS.gene54205:CDS | 55.0% |
| !! | TCATGCGCCCTAGGTGTTGA+GGG | + | chr5.1:6623619-6623638 | MS.gene54205:CDS | 55.0% |
| AGCGGTGGCGCAGAAAACAG+AGG | + | chr5.1:6623577-6623596 | MS.gene54205:CDS | 60.0% | |
| CATGCCGAAGATGCGGAGTC+GGG | + | chr5.1:6623643-6623662 | MS.gene54205:CDS | 60.0% | |
| CGGCATGACCCTCAACACCT+AGG | - | chr5.1:6623630-6623649 | None:intergenic | 60.0% | |
| GACCCGGAAAGGGCTGTTGT+TGG | + | chr5.1:6623673-6623692 | MS.gene54205:CDS | 60.0% | |
| TAACTCGGCGTTTCTGCGCG+TGG | - | chr5.1:6623446-6623465 | None:intergenic | 60.0% | |
| ! | TGTGGGCTATCATGCGCCCT+AGG | + | chr5.1:6623610-6623629 | MS.gene54205:CDS | 60.0% |
| CGCCGCGCGTGCTTCTAACT+CGG | - | chr5.1:6623461-6623480 | None:intergenic | 65.0% | |
| ! | CGCCGAGTTAGAAGCACGCG+CGG | + | chr5.1:6623456-6623475 | MS.gene54205:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6622578 | 6623855 | 6622578 | ID=MS.gene54205 |
| chr5.1 | mRNA | 6622578 | 6623855 | 6622578 | ID=MS.gene54205.t1;Parent=MS.gene54205 |
| chr5.1 | exon | 6622578 | 6622722 | 6622578 | ID=MS.gene54205.t1.exon1;Parent=MS.gene54205.t1 |
| chr5.1 | CDS | 6622578 | 6622722 | 6622578 | ID=cds.MS.gene54205.t1;Parent=MS.gene54205.t1 |
| chr5.1 | exon | 6622845 | 6623191 | 6622845 | ID=MS.gene54205.t1.exon2;Parent=MS.gene54205.t1 |
| chr5.1 | CDS | 6622845 | 6623191 | 6622845 | ID=cds.MS.gene54205.t1;Parent=MS.gene54205.t1 |
| chr5.1 | exon | 6623322 | 6623855 | 6623322 | ID=MS.gene54205.t1.exon3;Parent=MS.gene54205.t1 |
| chr5.1 | CDS | 6623322 | 6623855 | 6623322 | ID=cds.MS.gene54205.t1;Parent=MS.gene54205.t1 |
| Gene Sequence |
| Protein sequence |
