Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012024.t1 | XP_024628461.1 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 4.10E-238 | 833.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012024.t1 | Q6Z2G9 | 61.8 | 429 | 146 | 5 | 1 | 412 | 1 | 428 | 4.0e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012024.t1 | A0A072TSP9 | 98.8 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 2.9e-238 | 833.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene012024.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90691 | MS.gene012024 | PPI |
| MS.gene012024 | MS.gene24262 | PPI |
| MS.gene27297 | MS.gene012024 | PPI |
| MS.gene26978 | MS.gene012024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012024.t1 | MTR_8g077195 | 98.786 | 412 | 5 | 0 | 1 | 412 | 1 | 412 | 0.0 | 840 |
| MS.gene012024.t1 | MTR_5g020580 | 73.077 | 416 | 108 | 2 | 1 | 412 | 1 | 416 | 0.0 | 630 |
| MS.gene012024.t1 | MTR_8g077675 | 70.416 | 409 | 103 | 7 | 1 | 405 | 1 | 395 | 0.0 | 549 |
| MS.gene012024.t1 | MTR_8g077620 | 66.993 | 409 | 104 | 8 | 1 | 403 | 1 | 384 | 0.0 | 520 |
| MS.gene012024.t1 | MTR_1g022370 | 59.028 | 432 | 147 | 7 | 1 | 412 | 1 | 422 | 5.59e-174 | 493 |
| MS.gene012024.t1 | MTR_2g020280 | 57.453 | 369 | 148 | 3 | 46 | 412 | 32 | 393 | 1.74e-147 | 424 |
| MS.gene012024.t1 | MTR_2g007930 | 52.326 | 430 | 184 | 8 | 1 | 412 | 1 | 427 | 5.00e-146 | 422 |
| MS.gene012024.t1 | MTR_1g098790 | 51.025 | 439 | 180 | 11 | 1 | 412 | 1 | 431 | 3.62e-143 | 415 |
| MS.gene012024.t1 | MTR_1g088960 | 51.429 | 420 | 178 | 6 | 1 | 412 | 1 | 402 | 4.70e-142 | 410 |
| MS.gene012024.t1 | MTR_8g077650 | 57.732 | 388 | 92 | 10 | 37 | 409 | 3 | 333 | 1.35e-133 | 387 |
| MS.gene012024.t1 | MTR_2g076200 | 51.771 | 367 | 147 | 3 | 46 | 412 | 35 | 371 | 1.26e-126 | 370 |
| MS.gene012024.t1 | MTR_2g020280 | 58.140 | 301 | 117 | 3 | 114 | 412 | 1 | 294 | 3.40e-117 | 343 |
| MS.gene012024.t1 | MTR_2g076210 | 45.745 | 376 | 167 | 7 | 41 | 412 | 25 | 367 | 3.66e-99 | 300 |
| MS.gene012024.t1 | MTR_8g077640 | 65.919 | 223 | 50 | 4 | 1 | 205 | 46 | 260 | 5.20e-81 | 254 |
| MS.gene012024.t1 | MTR_8g077640 | 57.724 | 123 | 51 | 1 | 281 | 402 | 261 | 383 | 6.97e-37 | 138 |
| MS.gene012024.t1 | MTR_1g023800 | 61.224 | 147 | 54 | 2 | 1 | 146 | 1 | 145 | 8.43e-55 | 179 |
| MS.gene012024.t1 | MTR_0210s0010 | 52.475 | 101 | 41 | 2 | 96 | 196 | 9 | 102 | 2.62e-26 | 102 |
| MS.gene012024.t1 | MTR_0479s0040 | 57.143 | 70 | 24 | 1 | 112 | 181 | 12 | 75 | 1.57e-17 | 77.0 |
| MS.gene012024.t1 | MTR_2g105390 | 27.513 | 189 | 114 | 7 | 233 | 411 | 184 | 359 | 5.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012024.t1 | AT2G18280 | 62.740 | 416 | 128 | 9 | 1 | 412 | 1 | 393 | 9.34e-177 | 499 |
| MS.gene012024.t1 | AT2G18280 | 62.740 | 416 | 128 | 9 | 1 | 412 | 1 | 393 | 9.34e-177 | 499 |
| MS.gene012024.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 1 | 388 | 5.44e-149 | 428 |
| MS.gene012024.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 25 | 412 | 1.04e-148 | 428 |
| MS.gene012024.t1 | AT1G47270 | 54.545 | 429 | 137 | 11 | 1 | 412 | 26 | 413 | 1.10e-148 | 428 |
| MS.gene012024.t1 | AT2G47900 | 53.365 | 416 | 181 | 6 | 1 | 412 | 1 | 407 | 1.14e-148 | 428 |
| MS.gene012024.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 1.76e-148 | 427 |
| MS.gene012024.t1 | AT2G47900 | 53.494 | 415 | 181 | 6 | 1 | 412 | 1 | 406 | 1.76e-148 | 427 |
| MS.gene012024.t1 | AT1G25280 | 50.111 | 451 | 180 | 11 | 1 | 412 | 1 | 445 | 9.12e-142 | 412 |
| MS.gene012024.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene012024.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene012024.t1 | AT1G76900 | 48.690 | 458 | 186 | 8 | 1 | 412 | 1 | 455 | 3.95e-138 | 403 |
| MS.gene012024.t1 | AT1G43640 | 47.153 | 439 | 195 | 11 | 1 | 412 | 1 | 429 | 2.36e-129 | 379 |
| MS.gene012024.t1 | AT1G53320 | 51.791 | 363 | 145 | 4 | 53 | 412 | 44 | 379 | 2.43e-123 | 362 |
| MS.gene012024.t1 | AT3G06380 | 51.507 | 365 | 155 | 7 | 53 | 412 | 33 | 380 | 9.56e-123 | 361 |
| MS.gene012024.t1 | AT5G18680 | 50.541 | 370 | 162 | 7 | 49 | 412 | 35 | 389 | 2.09e-119 | 353 |
| MS.gene012024.t1 | AT1G43640 | 48.919 | 370 | 160 | 8 | 65 | 412 | 1 | 363 | 1.07e-116 | 345 |
| MS.gene012024.t1 | AT3G06380 | 51.163 | 301 | 126 | 6 | 116 | 412 | 5 | 288 | 3.76e-98 | 295 |
| MS.gene012024.t1 | AT5G18680 | 51.290 | 310 | 131 | 6 | 108 | 412 | 3 | 297 | 3.13e-97 | 293 |
| MS.gene012024.t1 | AT1G25280 | 52.222 | 270 | 97 | 7 | 172 | 412 | 1 | 267 | 5.72e-85 | 260 |
| MS.gene012024.t1 | AT1G25280 | 52.222 | 270 | 97 | 7 | 172 | 412 | 1 | 267 | 5.72e-85 | 260 |
| MS.gene012024.t1 | AT1G61940 | 54.023 | 87 | 40 | 0 | 56 | 142 | 1 | 87 | 5.77e-28 | 111 |
| MS.gene012024.t1 | AT1G61940 | 54.098 | 61 | 28 | 0 | 56 | 116 | 1 | 61 | 2.58e-16 | 78.6 |
Find 116 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGCCCTTCTTATCTTTC+TGG | 0.112808 | 8.2:-28481012 | None:intergenic |
| ATTACCTGCTTCAATGAAAT+AGG | 0.231585 | 8.2:-28480571 | None:intergenic |
| ATGATGCAGTGCACTCTTCT+TGG | 0.233427 | 8.2:-28481386 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.284311 | 8.2:+28480405 | MS.gene012024:CDS |
| TGACCGACATAGCCAATTCT+TGG | 0.292823 | 8.2:-28480320 | None:intergenic |
| ATCTTACAGTTTGGAAAGAT+TGG | 0.295811 | 8.2:+28481752 | MS.gene012024:CDS |
| GAGGTAACGATGTTGGGGTT+GGG | 0.312924 | 8.2:-28481451 | None:intergenic |
| TATACCTATCTCAGCTATTC+AGG | 0.328559 | 8.2:+28481415 | MS.gene012024:CDS |
| ATCCGATCCAGTGCTTTATT+AGG | 0.329707 | 8.2:+28480703 | MS.gene012024:CDS |
| CTCTCATTCACAAGCAGGTT+TGG | 0.347646 | 8.2:-28481855 | None:intergenic |
| CTCGCACTTGGTCGACGATT+AGG | 0.349859 | 8.2:-28481269 | None:intergenic |
| TCCAATTGAACCTATTCAAC+AGG | 0.350379 | 8.2:+28480369 | MS.gene012024:CDS |
| ATATTTGAGGTAACGATGTT+GGG | 0.363096 | 8.2:-28481457 | None:intergenic |
| TTTACCAACATATTTGTTGC+TGG | 0.366133 | 8.2:-28481081 | None:intergenic |
| CCCTGTTGAATAGGTTCAAT+TGG | 0.369838 | 8.2:-28480370 | None:intergenic |
| GAAAGGGTAATCTTACAGTT+TGG | 0.371540 | 8.2:+28481743 | MS.gene012024:CDS |
| AGGTAACGATGTTGGGGTTG+GGG | 0.375686 | 8.2:-28481450 | None:intergenic |
| ATTATGTCCAAAAGCAATTC+AGG | 0.377900 | 8.2:-28480412 | None:intergenic |
| CCAGAGAGCATTTAGCTCAT+AGG | 0.381684 | 8.2:-28481354 | None:intergenic |
| CTTCGTGTTGTACTTAGGTT+TGG | 0.385998 | 8.2:+28480746 | MS.gene012024:CDS |
| CACCGACTTTGTCATATCCT+TGG | 0.386843 | 8.2:+28481037 | MS.gene012024:CDS |
| GTGTTGGTGCCTAAACTTCA+TGG | 0.395112 | 8.2:+28481637 | MS.gene012024:CDS |
| ATCGAGCCTTGGCTCGGTTC+TGG | 0.397446 | 8.2:-28481563 | None:intergenic |
| TGAGGTAACGATGTTGGGGT+TGG | 0.418830 | 8.2:-28481452 | None:intergenic |
| TAACACGACCCATGAAGTTT+AGG | 0.421461 | 8.2:-28481646 | None:intergenic |
| CCAGCATGTAACAATCTTGT+TGG | 0.440142 | 8.2:+28481323 | MS.gene012024:CDS |
| TTTCTTCCTCTGAGCAAGAA+AGG | 0.442479 | 8.2:+28481726 | MS.gene012024:CDS |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8.2:+28480491 | MS.gene012024:CDS |
| ACCGACTTTGTCATATCCTT+GGG | 0.452958 | 8.2:+28481038 | MS.gene012024:CDS |
| CTAAATGCTCTCTGGACTAG+AGG | 0.452982 | 8.2:+28481362 | MS.gene012024:CDS |
| AAAACAACAACAGCACGAGC+AGG | 0.453602 | 8.2:-28480466 | None:intergenic |
| CCTTCCTGAATAGCTGAGAT+AGG | 0.455053 | 8.2:-28481419 | None:intergenic |
| TCAAGCAGATTGCAAAGGCT+TGG | 0.460094 | 8.2:-28481820 | None:intergenic |
| ATTTCCTATTTCATTGAAGC+AGG | 0.465510 | 8.2:+28480567 | MS.gene012024:CDS |
| GGGGTTCCGACACCAAGAAT+TGG | 0.468962 | 8.2:+28480308 | MS.gene012024:CDS |
| TCTACCTTCGTGTTGTACTT+AGG | 0.472018 | 8.2:+28480741 | MS.gene012024:CDS |
| AATATTTGAGGTAACGATGT+TGG | 0.472032 | 8.2:-28481458 | None:intergenic |
| AGCATTTAGCTCATAGGAAA+TGG | 0.472326 | 8.2:-28481348 | None:intergenic |
| GCCCACTGTCCCTGTTGAAT+AGG | 0.474061 | 8.2:-28480379 | None:intergenic |
| CCAGAGTACGAATCTGTCAT+TGG | 0.478687 | 8.2:-28481524 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8.2:+28480443 | MS.gene012024:CDS |
| GTTGTCATATATAGCAAACT+TGG | 0.484168 | 8.2:-28481219 | None:intergenic |
| CGATCCAGTGCTTTATTAGG+AGG | 0.490560 | 8.2:+28480706 | MS.gene012024:CDS |
| CCAAGGCTCGATGGACTCCT+TGG | 0.492424 | 8.2:+28481574 | MS.gene012024:CDS |
| CCTATGAGCTAAATGCTCTC+TGG | 0.493546 | 8.2:+28481354 | MS.gene012024:CDS |
| CACAGCTCTCATTCACAAGC+AGG | 0.495782 | 8.2:-28481860 | None:intergenic |
| GGTTCAATTGGAGTTACATC+CGG | 0.496479 | 8.2:-28480358 | None:intergenic |
| GTCAAAGTCACATGTTGCTC+CGG | 0.499201 | 8.2:+28480339 | MS.gene012024:CDS |
| AGTGCTGGTGAGGGAGGAAA+AGG | 0.500529 | 8.2:-28481488 | None:intergenic |
| TTGTTACATGCTGGAACTCT+TGG | 0.500747 | 8.2:-28481314 | None:intergenic |
| TCGGTTCTGGTAGCTCTGAT+AGG | 0.502232 | 8.2:-28481550 | None:intergenic |
| AAGCATAGTCCGCGAACTCA+AGG | 0.507358 | 8.2:+28480252 | MS.gene012024:CDS |
| AAAGGTACACTGAATATTTG+AGG | 0.519063 | 8.2:-28481470 | None:intergenic |
| TTCTTCCTCTGAGCAAGAAA+GGG | 0.522668 | 8.2:+28481727 | MS.gene012024:CDS |
| GATCGGATAATCACGAGGAC+CGG | 0.524270 | 8.2:-28480688 | None:intergenic |
| GCAGATTGCAAAGGCTTGGA+AGG | 0.525320 | 8.2:-28481816 | None:intergenic |
| AATAGGTAGCATATCAAAGC+GGG | 0.526116 | 8.2:+28480288 | MS.gene012024:CDS |
| CCTATCTCAGCTATTCAGGA+AGG | 0.539583 | 8.2:+28481419 | MS.gene012024:CDS |
| CCAAGGAGTCCATCGAGCCT+TGG | 0.540676 | 8.2:-28481574 | None:intergenic |
| TGTTCCTCCTAATAAAGCAC+TGG | 0.546307 | 8.2:-28480710 | None:intergenic |
| ATCGGATAATCACGAGGACC+GGG | 0.546623 | 8.2:-28480687 | None:intergenic |
| TGCGAGACTTAATTCTAAGC+AGG | 0.549219 | 8.2:+28481286 | MS.gene012024:CDS |
| TCTTTCAGTGCTGGTGAGGG+AGG | 0.551006 | 8.2:-28481494 | None:intergenic |
| CCAATGACAGATTCGTACTC+TGG | 0.552500 | 8.2:+28481524 | MS.gene012024:CDS |
| TAGCCGCCAGAAAGATAAGA+AGG | 0.555283 | 8.2:+28481006 | MS.gene012024:CDS |
| CCAACAAGATTGTTACATGC+TGG | 0.555601 | 8.2:-28481323 | None:intergenic |
| TGAAGTTTAGGCACCAACAC+TGG | 0.557707 | 8.2:-28481634 | None:intergenic |
| AGCATAGTCCGCGAACTCAA+GGG | 0.558850 | 8.2:+28480253 | MS.gene012024:CDS |
| CTTGATAATCTCTTTAGTAA+CGG | 0.564764 | 8.2:-28480518 | None:intergenic |
| CTATCTCAGCTATTCAGGAA+GGG | 0.566111 | 8.2:+28481420 | MS.gene012024:CDS |
| CGAGCCAGCAACAAATATGT+TGG | 0.568606 | 8.2:+28481077 | MS.gene012024:CDS |
| ACCTATTCAACAGGGACAGT+GGG | 0.571704 | 8.2:+28480378 | MS.gene012024:CDS |
| GAGTCCATCGAGCCTTGGCT+CGG | 0.572639 | 8.2:-28481569 | None:intergenic |
| TATCTCAGCTATTCAGGAAG+GGG | 0.574086 | 8.2:+28481421 | MS.gene012024:CDS |
| TGTTGGTGCCTAAACTTCAT+GGG | 0.575598 | 8.2:+28481638 | MS.gene012024:CDS |
| CTCCTAATAAAGCACTGGAT+CGG | 0.579253 | 8.2:-28480705 | None:intergenic |
| TGGAGCTGCTCATGCCACCT+AGG | 0.585203 | 8.2:-28481614 | None:intergenic |
| GGCATGAGCAGCTCCAGTGT+TGG | 0.585590 | 8.2:+28481621 | MS.gene012024:CDS |
| GGCCCTTCTTATCTTTCTGG+CGG | 0.587954 | 8.2:-28481009 | None:intergenic |
| TTAGAATTAAGTCTCGCACT+TGG | 0.589398 | 8.2:-28481281 | None:intergenic |
| GGTTGAACTGCAGCGTCATG+TGG | 0.590130 | 8.2:-28481248 | None:intergenic |
| AGAAAGATAAGAAGGGCCAC+AGG | 0.590973 | 8.2:+28481014 | MS.gene012024:CDS |
| GCTTGTCAAGCAGATTGCAA+AGG | 0.591302 | 8.2:-28481825 | None:intergenic |
| TAAATGCTCTCTGGACTAGA+GGG | 0.594786 | 8.2:+28481363 | MS.gene012024:CDS |
| CTGCAGCGTCATGTGGAGGT+TGG | 0.594900 | 8.2:-28481241 | None:intergenic |
| AGAACCGAGCCAAGGCTCGA+TGG | 0.600159 | 8.2:+28481565 | MS.gene012024:CDS |
| ACACCAAGAATTGGCTATGT+CGG | 0.600503 | 8.2:+28480317 | MS.gene012024:CDS |
| GCATAGTCCGCGAACTCAAG+GGG | 0.603504 | 8.2:+28480254 | MS.gene012024:CDS |
| AAGGCTTGGAAGGCAGAGAG+TGG | 0.610317 | 8.2:-28481806 | None:intergenic |
| GAGTGGGTAAGAGTAGTCCA+TGG | 0.613248 | 8.2:-28481789 | None:intergenic |
| ACAAATATGTTGGTAAACTG+AGG | 0.614123 | 8.2:+28481087 | MS.gene012024:CDS |
| TATGACAAAGTCGGTGCCTG+TGG | 0.616367 | 8.2:-28481030 | None:intergenic |
| AGACTCCTCAGCAATGCGGA+AGG | 0.618284 | 8.2:+28480539 | MS.gene012024:CDS |
| TATTTGAGGTAACGATGTTG+GGG | 0.620267 | 8.2:-28481456 | None:intergenic |
| GAGGAAGAAACATTATGAGA+CGG | 0.628123 | 8.2:-28481713 | None:intergenic |
| CTTCATGGGTCGTGTTACAG+TGG | 0.629354 | 8.2:+28481652 | MS.gene012024:CDS |
| ACATAGCCAATTCTTGGTGT+CGG | 0.630203 | 8.2:-28480314 | None:intergenic |
| AACCTATTCAACAGGGACAG+TGG | 0.631854 | 8.2:+28480377 | MS.gene012024:CDS |
| TCTCACTCTCTTCAACCCTA+CGG | 0.632526 | 8.2:-28480435 | None:intergenic |
| GTGATCCTTCCGCATTGCTG+AGG | 0.633651 | 8.2:-28480544 | None:intergenic |
| GAGCTACCAGAACCGAGCCA+AGG | 0.641949 | 8.2:+28481557 | MS.gene012024:CDS |
| TGGAAAAGATATATTCACCA+TGG | 0.647072 | 8.2:+28481772 | MS.gene012024:CDS |
| GCCCAAGGATATGACAAAGT+CGG | 0.650298 | 8.2:-28481039 | None:intergenic |
| AGGCTTGGAAGGCAGAGAGT+GGG | 0.650720 | 8.2:-28481805 | None:intergenic |
| GATTACCCTTTCTTGCTCAG+AGG | 0.652475 | 8.2:-28481732 | None:intergenic |
| CCAATTGAACCTATTCAACA+GGG | 0.658968 | 8.2:+28480370 | MS.gene012024:CDS |
| AGCCGCCAGAAAGATAAGAA+GGG | 0.660186 | 8.2:+28481007 | MS.gene012024:CDS |
| ATCTCAGCTATTCAGGAAGG+GGG | 0.669799 | 8.2:+28481422 | MS.gene012024:CDS |
| CACTGGATCGGATAATCACG+AGG | 0.678479 | 8.2:-28480693 | None:intergenic |
| TGAACTGCAGCGTCATGTGG+AGG | 0.688082 | 8.2:-28481245 | None:intergenic |
| ATGTCCAAAAGCAATTCAGG+AGG | 0.691534 | 8.2:-28480409 | None:intergenic |
| ATCAAGACTCCTCAGCAATG+CGG | 0.693306 | 8.2:+28480535 | MS.gene012024:CDS |
| CTTCGGTATGTAAATCATGG+AGG | 0.716243 | 8.2:+28480494 | MS.gene012024:CDS |
| GAATAGGTAGCATATCAAAG+CGG | 0.721866 | 8.2:+28480287 | MS.gene012024:CDS |
| ATAGGTAGCATATCAAAGCG+GGG | 0.729686 | 8.2:+28480289 | MS.gene012024:CDS |
| CAAACCTAAGTACAACACGA+AGG | 0.754352 | 8.2:-28480745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTGGATTATACTAAAAA+GGG | - | chr8.2:28480608-28480627 | None:intergenic | 15.0% |
| !! | ATACAAAATAGAAAAAATGT+CGG | - | chr8.2:28480905-28480924 | None:intergenic | 15.0% |
| !! | TAATTTGGATTATACTAAAA+AGG | - | chr8.2:28480609-28480628 | None:intergenic | 15.0% |
| !! | AGTATAATCCAAATTATTCT+TGG | + | chr8.2:28480613-28480632 | MS.gene012024:intron | 20.0% |
| !! | ATTTGGATTATACTAAAAAG+GGG | - | chr8.2:28480607-28480626 | None:intergenic | 20.0% |
| !!! | CAACATGTTTTTTATACATT+TGG | + | chr8.2:28481176-28481195 | MS.gene012024:intron | 20.0% |
| ! | AAAAACATGTTGAGATTACA+AGG | - | chr8.2:28481168-28481187 | None:intergenic | 25.0% |
| ! | AAAACATGTTGAGATTACAA+GGG | - | chr8.2:28481167-28481186 | None:intergenic | 25.0% |
| ! | AATAAAAAAGCTCATGAACT+TGG | - | chr8.2:28480845-28480864 | None:intergenic | 25.0% |
| ! | AGGATTAAAAGCTGATATAA+GGG | - | chr8.2:28481142-28481161 | None:intergenic | 25.0% |
| ! | CTTAAAGATGATAACTTACA+TGG | - | chr8.2:28480774-28480793 | None:intergenic | 25.0% |
| ! | TAGGATTAAAAGCTGATATA+AGG | - | chr8.2:28481143-28481162 | None:intergenic | 25.0% |
| !! | ATAAGAAGCATAAAAACCTA+AGG | - | chr8.2:28480640-28480659 | None:intergenic | 25.0% |
| !! | CTTGATAATCTCTTTAGTAA+CGG | - | chr8.2:28480521-28480540 | None:intergenic | 25.0% |
| !! | TAAGAAGCATAAAAACCTAA+GGG | - | chr8.2:28480639-28480658 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTATACATTTGGC+AGG | + | chr8.2:28481180-28481199 | MS.gene012024:intron | 25.0% |
| AAACATGTTGAGATTACAAG+GGG | - | chr8.2:28481166-28481185 | None:intergenic | 30.0% | |
| ATCTTACAGTTTGGAAAGAT+TGG | + | chr8.2:28481752-28481771 | MS.gene012024:CDS | 30.0% | |
| ATTACCTGCTTCAATGAAAT+AGG | - | chr8.2:28480574-28480593 | None:intergenic | 30.0% | |
| ATTATGTCCAAAAGCAATTC+AGG | - | chr8.2:28480415-28480434 | None:intergenic | 30.0% | |
| ATTTATTGCGATTTAGACTG+TGG | + | chr8.2:28480866-28480885 | MS.gene012024:intron | 30.0% | |
| ATTTCCTATTTCATTGAAGC+AGG | + | chr8.2:28480567-28480586 | MS.gene012024:CDS | 30.0% | |
| GAAATTCAACATTCATAGTC+AGG | - | chr8.2:28480814-28480833 | None:intergenic | 30.0% | |
| GTTGTCATATATAGCAAACT+TGG | - | chr8.2:28481222-28481241 | None:intergenic | 30.0% | |
| TACTTAAAAACAAGTCTCCT+AGG | + | chr8.2:28481597-28481616 | MS.gene012024:CDS | 30.0% | |
| TGGAAAAGATATATTCACCA+TGG | + | chr8.2:28481772-28481791 | MS.gene012024:CDS | 30.0% | |
| ! | AAAGGTACACTGAATATTTG+AGG | - | chr8.2:28481473-28481492 | None:intergenic | 30.0% |
| ! | AATATTTGAGGTAACGATGT+TGG | - | chr8.2:28481461-28481480 | None:intergenic | 30.0% |
| ! | ACAAATATGTTGGTAAACTG+AGG | + | chr8.2:28481087-28481106 | MS.gene012024:CDS | 30.0% |
| ! | ATATTTGAGGTAACGATGTT+GGG | - | chr8.2:28481460-28481479 | None:intergenic | 30.0% |
| ! | ATTTGGCAGGTCTAATTTTT+GGG | + | chr8.2:28481193-28481212 | MS.gene012024:intron | 30.0% |
| ! | TTTACCAACATATTTGTTGC+TGG | - | chr8.2:28481084-28481103 | None:intergenic | 30.0% |
| !! | GCATTTAAGTGATCTTGTTT+TGG | + | chr8.2:28480937-28480956 | MS.gene012024:intron | 30.0% |
| !!! | AGACTTGTTTTTAAGTACCA+AGG | - | chr8.2:28481594-28481613 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTT+CGG | + | chr8.2:28480477-28480496 | MS.gene012024:CDS | 30.0% |
| !!! | TTGTTTTGGTTTTGTCGTAA+CGG | + | chr8.2:28480951-28480970 | MS.gene012024:intron | 30.0% |
| AAGGGGATGAAAAATGGAAT+AGG | + | chr8.2:28480271-28480290 | MS.gene012024:CDS | 35.0% | |
| AATAGGTAGCATATCAAAGC+GGG | + | chr8.2:28480288-28480307 | MS.gene012024:CDS | 35.0% | |
| CCAATTGAACCTATTCAACA+GGG | + | chr8.2:28480370-28480389 | MS.gene012024:CDS | 35.0% | |
| GAAAGGGTAATCTTACAGTT+TGG | + | chr8.2:28481743-28481762 | MS.gene012024:CDS | 35.0% | |
| GAATAGGTAGCATATCAAAG+CGG | + | chr8.2:28480287-28480306 | MS.gene012024:CDS | 35.0% | |
| GAGGAAGAAACATTATGAGA+CGG | - | chr8.2:28481716-28481735 | None:intergenic | 35.0% | |
| TATACCTATCTCAGCTATTC+AGG | + | chr8.2:28481415-28481434 | MS.gene012024:CDS | 35.0% | |
| TCCAATTGAACCTATTCAAC+AGG | + | chr8.2:28480369-28480388 | MS.gene012024:CDS | 35.0% | |
| TTAAAAACAAGTCTCCTAGG+TGG | + | chr8.2:28481600-28481619 | MS.gene012024:CDS | 35.0% | |
| TTAGAATTAAGTCTCGCACT+TGG | - | chr8.2:28481284-28481303 | None:intergenic | 35.0% | |
| ! | AGCATTTAGCTCATAGGAAA+TGG | - | chr8.2:28481351-28481370 | None:intergenic | 35.0% |
| ! | CATTTGGCAGGTCTAATTTT+TGG | + | chr8.2:28481192-28481211 | MS.gene012024:intron | 35.0% |
| ! | TATTTGAGGTAACGATGTTG+GGG | - | chr8.2:28481459-28481478 | None:intergenic | 35.0% |
| ! | TTTGGCAGGTCTAATTTTTG+GGG | + | chr8.2:28481194-28481213 | MS.gene012024:intron | 35.0% |
| ACACCAAGAATTGGCTATGT+CGG | + | chr8.2:28480317-28480336 | MS.gene012024:CDS | 40.0% | |
| ATAGGTAGCATATCAAAGCG+GGG | + | chr8.2:28480289-28480308 | MS.gene012024:CDS | 40.0% | |
| ATGTCCAAAAGCAATTCAGG+AGG | - | chr8.2:28480412-28480431 | None:intergenic | 40.0% | |
| ATGTTGAGATTACAAGGGGT+AGG | - | chr8.2:28481162-28481181 | None:intergenic | 40.0% | |
| CAAACCTAAGTACAACACGA+AGG | - | chr8.2:28480748-28480767 | None:intergenic | 40.0% | |
| CCAAATTATTCTTGGCCCTT+AGG | + | chr8.2:28480621-28480640 | MS.gene012024:intron | 40.0% | |
| CCAACAAGATTGTTACATGC+TGG | - | chr8.2:28481326-28481345 | None:intergenic | 40.0% | |
| CCAGCATGTAACAATCTTGT+TGG | + | chr8.2:28481323-28481342 | MS.gene012024:CDS | 40.0% | |
| CCCTGTTGAATAGGTTCAAT+TGG | - | chr8.2:28480373-28480392 | None:intergenic | 40.0% | |
| CCTAAGGGCCAAGAATAATT+TGG | - | chr8.2:28480624-28480643 | None:intergenic | 40.0% | |
| CCTTATGTGTATGAATAGCC+CGG | + | chr8.2:28480669-28480688 | MS.gene012024:intron | 40.0% | |
| CTATCTCAGCTATTCAGGAA+GGG | + | chr8.2:28481420-28481439 | MS.gene012024:CDS | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | chr8.2:28480494-28480513 | MS.gene012024:CDS | 40.0% | |
| CTTCGTGTTGTACTTAGGTT+TGG | + | chr8.2:28480746-28480765 | MS.gene012024:CDS | 40.0% | |
| GAACTCAAGGGGATGAAAAA+TGG | + | chr8.2:28480265-28480284 | MS.gene012024:CDS | 40.0% | |
| GGTTCAATTGGAGTTACATC+CGG | - | chr8.2:28480361-28480380 | None:intergenic | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | chr8.2:28480491-28480510 | MS.gene012024:CDS | 40.0% | |
| TAACACGACCCATGAAGTTT+AGG | - | chr8.2:28481649-28481668 | None:intergenic | 40.0% | |
| TATCTCAGCTATTCAGGAAG+GGG | + | chr8.2:28481421-28481440 | MS.gene012024:CDS | 40.0% | |
| TCTACCTTCGTGTTGTACTT+AGG | + | chr8.2:28480741-28480760 | MS.gene012024:CDS | 40.0% | |
| TGCGAGACTTAATTCTAAGC+AGG | + | chr8.2:28481286-28481305 | MS.gene012024:CDS | 40.0% | |
| TGTTCCTCCTAATAAAGCAC+TGG | - | chr8.2:28480713-28480732 | None:intergenic | 40.0% | |
| TTCTTCCTCTGAGCAAGAAA+GGG | + | chr8.2:28481727-28481746 | MS.gene012024:CDS | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | chr8.2:28480443-28480462 | MS.gene012024:CDS | 40.0% | |
| TTGTTACATGCTGGAACTCT+TGG | - | chr8.2:28481317-28481336 | None:intergenic | 40.0% | |
| TTTCTTCCTCTGAGCAAGAA+AGG | + | chr8.2:28481726-28481745 | MS.gene012024:CDS | 40.0% | |
| ! | ACATAGCCAATTCTTGGTGT+CGG | - | chr8.2:28480317-28480336 | None:intergenic | 40.0% |
| ! | ACCGACTTTGTCATATCCTT+GGG | + | chr8.2:28481038-28481057 | MS.gene012024:CDS | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+AGG | + | chr8.2:28480703-28480722 | MS.gene012024:CDS | 40.0% |
| ! | GCTTTTGGACATAATCCGTA+GGG | + | chr8.2:28480420-28480439 | MS.gene012024:CDS | 40.0% |
| ! | GTTTTGTCGTAACGGTATAG+CGG | + | chr8.2:28480959-28480978 | MS.gene012024:intron | 40.0% |
| ! | TAAATGCTCTCTGGACTAGA+GGG | + | chr8.2:28481363-28481382 | MS.gene012024:CDS | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | + | chr8.2:28480405-28480424 | MS.gene012024:CDS | 40.0% |
| ! | TGCTTTTGGACATAATCCGT+AGG | + | chr8.2:28480419-28480438 | MS.gene012024:CDS | 40.0% |
| ! | TGGTAAACTGAGGCAAGTTT+TGG | + | chr8.2:28481097-28481116 | MS.gene012024:intron | 40.0% |
| ! | TGTTGGTGCCTAAACTTCAT+GGG | + | chr8.2:28481638-28481657 | MS.gene012024:CDS | 40.0% |
| !! | CTCCTAATAAAGCACTGGAT+CGG | - | chr8.2:28480708-28480727 | None:intergenic | 40.0% |
| !!! | GGACTTTTTTCTTTCAGTGC+TGG | - | chr8.2:28481506-28481525 | None:intergenic | 40.0% |
| !!! | TTTTCTTTCAGTGCTGGTGA+GGG | - | chr8.2:28481500-28481519 | None:intergenic | 40.0% |
| !!! | TTTTTCTTTCAGTGCTGGTG+AGG | - | chr8.2:28481501-28481520 | None:intergenic | 40.0% |
| AAAACAACAACAGCACGAGC+AGG | - | chr8.2:28480469-28480488 | None:intergenic | 45.0% | |
| AACCTATTCAACAGGGACAG+TGG | + | chr8.2:28480377-28480396 | MS.gene012024:CDS | 45.0% | |
| ACCTATTCAACAGGGACAGT+GGG | + | chr8.2:28480378-28480397 | MS.gene012024:CDS | 45.0% | |
| AGAAAAATCGTCTGTGCCCA+AGG | - | chr8.2:28481057-28481076 | None:intergenic | 45.0% | |
| AGAAAGATAAGAAGGGCCAC+AGG | + | chr8.2:28481014-28481033 | MS.gene012024:CDS | 45.0% | |
| AGCCGCCAGAAAGATAAGAA+GGG | + | chr8.2:28481007-28481026 | MS.gene012024:CDS | 45.0% | |
| ATCAAGACTCCTCAGCAATG+CGG | + | chr8.2:28480535-28480554 | MS.gene012024:CDS | 45.0% | |
| ATCTCAGCTATTCAGGAAGG+GGG | + | chr8.2:28481422-28481441 | MS.gene012024:CDS | 45.0% | |
| ATGATGCAGTGCACTCTTCT+TGG | - | chr8.2:28481389-28481408 | None:intergenic | 45.0% | |
| CCAATGACAGATTCGTACTC+TGG | + | chr8.2:28481524-28481543 | MS.gene012024:CDS | 45.0% | |
| CCAGAGTACGAATCTGTCAT+TGG | - | chr8.2:28481527-28481546 | None:intergenic | 45.0% | |
| CCGGGCTATTCATACACATA+AGG | - | chr8.2:28480672-28480691 | None:intergenic | 45.0% | |
| CCTATCTCAGCTATTCAGGA+AGG | + | chr8.2:28481419-28481438 | MS.gene012024:CDS | 45.0% | |
| CCTATGAGCTAAATGCTCTC+TGG | + | chr8.2:28481354-28481373 | MS.gene012024:CDS | 45.0% | |
| CCTTCCTGAATAGCTGAGAT+AGG | - | chr8.2:28481422-28481441 | None:intergenic | 45.0% | |
| CGAGCCAGCAACAAATATGT+TGG | + | chr8.2:28481077-28481096 | MS.gene012024:CDS | 45.0% | |
| GATTACCCTTTCTTGCTCAG+AGG | - | chr8.2:28481735-28481754 | None:intergenic | 45.0% | |
| GCCCAAGGATATGACAAAGT+CGG | - | chr8.2:28481042-28481061 | None:intergenic | 45.0% | |
| GCTTGTCAAGCAGATTGCAA+AGG | - | chr8.2:28481828-28481847 | None:intergenic | 45.0% | |
| GTCAAAGTCACATGTTGCTC+CGG | + | chr8.2:28480339-28480358 | MS.gene012024:CDS | 45.0% | |
| TAGCCGCCAGAAAGATAAGA+AGG | + | chr8.2:28481006-28481025 | MS.gene012024:CDS | 45.0% | |
| TCAAGCAGATTGCAAAGGCT+TGG | - | chr8.2:28481823-28481842 | None:intergenic | 45.0% | |
| TCTCACTCTCTTCAACCCTA+CGG | - | chr8.2:28480438-28480457 | None:intergenic | 45.0% | |
| TGAAGTTTAGGCACCAACAC+TGG | - | chr8.2:28481637-28481656 | None:intergenic | 45.0% | |
| TGACCGACATAGCCAATTCT+TGG | - | chr8.2:28480323-28480342 | None:intergenic | 45.0% | |
| TGTGGCCCTTCTTATCTTTC+TGG | - | chr8.2:28481015-28481034 | None:intergenic | 45.0% | |
| ! | CGATCCAGTGCTTTATTAGG+AGG | + | chr8.2:28480706-28480725 | MS.gene012024:CDS | 45.0% |
| ! | CTAAATGCTCTCTGGACTAG+AGG | + | chr8.2:28481362-28481381 | MS.gene012024:CDS | 45.0% |
| ! | GTGTTGGTGCCTAAACTTCA+TGG | + | chr8.2:28481637-28481656 | MS.gene012024:CDS | 45.0% |
| ! | TTTTCATCCCCTTGAGTTCG+CGG | - | chr8.2:28480264-28480283 | None:intergenic | 45.0% |
| !! | CACCGACTTTGTCATATCCT+TGG | + | chr8.2:28481037-28481056 | MS.gene012024:CDS | 45.0% |
| !! | CCAGAGAGCATTTAGCTCAT+AGG | - | chr8.2:28481357-28481376 | None:intergenic | 45.0% |
| AAGCATAGTCCGCGAACTCA+AGG | + | chr8.2:28480252-28480271 | MS.gene012024:CDS | 50.0% | |
| AGCATAGTCCGCGAACTCAA+GGG | + | chr8.2:28480253-28480272 | MS.gene012024:CDS | 50.0% | |
| AGGTAACGATGTTGGGGTTG+GGG | - | chr8.2:28481453-28481472 | None:intergenic | 50.0% | |
| ATCGGATAATCACGAGGACC+GGG | - | chr8.2:28480690-28480709 | None:intergenic | 50.0% | |
| CACTGGATCGGATAATCACG+AGG | - | chr8.2:28480696-28480715 | None:intergenic | 50.0% | |
| CTTCATGGGTCGTGTTACAG+TGG | + | chr8.2:28481652-28481671 | MS.gene012024:CDS | 50.0% | |
| GAGGTAACGATGTTGGGGTT+GGG | - | chr8.2:28481454-28481473 | None:intergenic | 50.0% | |
| GAGTGGGTAAGAGTAGTCCA+TGG | - | chr8.2:28481792-28481811 | None:intergenic | 50.0% | |
| GATCGGATAATCACGAGGAC+CGG | - | chr8.2:28480691-28480710 | None:intergenic | 50.0% | |
| GCAGATTGCAAAGGCTTGGA+AGG | - | chr8.2:28481819-28481838 | None:intergenic | 50.0% | |
| GGCCCTTCTTATCTTTCTGG+CGG | - | chr8.2:28481012-28481031 | None:intergenic | 50.0% | |
| TGAGGTAACGATGTTGGGGT+TGG | - | chr8.2:28481455-28481474 | None:intergenic | 50.0% | |
| ! | TATGACAAAGTCGGTGCCTG+TGG | - | chr8.2:28481033-28481052 | None:intergenic | 50.0% |
| !! | TCGGTTCTGGTAGCTCTGAT+AGG | - | chr8.2:28481553-28481572 | None:intergenic | 50.0% |
| AAGGCTTGGAAGGCAGAGAG+TGG | - | chr8.2:28481809-28481828 | None:intergenic | 55.0% | |
| AGACTCCTCAGCAATGCGGA+AGG | + | chr8.2:28480539-28480558 | MS.gene012024:CDS | 55.0% | |
| AGGCTTGGAAGGCAGAGAGT+GGG | - | chr8.2:28481808-28481827 | None:intergenic | 55.0% | |
| CTCGCACTTGGTCGACGATT+AGG | - | chr8.2:28481272-28481291 | None:intergenic | 55.0% | |
| GCATAGTCCGCGAACTCAAG+GGG | + | chr8.2:28480254-28480273 | MS.gene012024:CDS | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+AGG | - | chr8.2:28480382-28480401 | None:intergenic | 55.0% | |
| GGGGTTCCGACACCAAGAAT+TGG | + | chr8.2:28480308-28480327 | MS.gene012024:CDS | 55.0% | |
| GGTTGAACTGCAGCGTCATG+TGG | - | chr8.2:28481251-28481270 | None:intergenic | 55.0% | |
| GTGATCCTTCCGCATTGCTG+AGG | - | chr8.2:28480547-28480566 | None:intergenic | 55.0% | |
| TGAACTGCAGCGTCATGTGG+AGG | - | chr8.2:28481248-28481267 | None:intergenic | 55.0% | |
| !! | AGTGCTGGTGAGGGAGGAAA+AGG | - | chr8.2:28481491-28481510 | None:intergenic | 55.0% |
| !! | TCTTTCAGTGCTGGTGAGGG+AGG | - | chr8.2:28481497-28481516 | None:intergenic | 55.0% |
| AGAACCGAGCCAAGGCTCGA+TGG | + | chr8.2:28481565-28481584 | MS.gene012024:CDS | 60.0% | |
| CCAAGGAGTCCATCGAGCCT+TGG | - | chr8.2:28481577-28481596 | None:intergenic | 60.0% | |
| CTGCAGCGTCATGTGGAGGT+TGG | - | chr8.2:28481244-28481263 | None:intergenic | 60.0% | |
| GAGCTACCAGAACCGAGCCA+AGG | + | chr8.2:28481557-28481576 | MS.gene012024:CDS | 60.0% | |
| GAGTCCATCGAGCCTTGGCT+CGG | - | chr8.2:28481572-28481591 | None:intergenic | 60.0% | |
| GGCATGAGCAGCTCCAGTGT+TGG | + | chr8.2:28481621-28481640 | MS.gene012024:CDS | 60.0% | |
| TGGAGCTGCTCATGCCACCT+AGG | - | chr8.2:28481617-28481636 | None:intergenic | 60.0% | |
| ! | CCAAGGCTCGATGGACTCCT+TGG | + | chr8.2:28481574-28481593 | MS.gene012024:CDS | 60.0% |
| !! | ATCGAGCCTTGGCTCGGTTC+TGG | - | chr8.2:28481566-28481585 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28480241 | 28481874 | 28480241 | ID=MS.gene012024 |
| chr8.2 | mRNA | 28480241 | 28481874 | 28480241 | ID=MS.gene012024.t1;Parent=MS.gene012024 |
| chr8.2 | exon | 28480241 | 28480588 | 28480241 | ID=MS.gene012024.t1.exon1;Parent=MS.gene012024.t1 |
| chr8.2 | CDS | 28480241 | 28480588 | 28480241 | ID=cds.MS.gene012024.t1;Parent=MS.gene012024.t1 |
| chr8.2 | exon | 28480687 | 28480774 | 28480687 | ID=MS.gene012024.t1.exon2;Parent=MS.gene012024.t1 |
| chr8.2 | CDS | 28480687 | 28480774 | 28480687 | ID=cds.MS.gene012024.t1;Parent=MS.gene012024.t1 |
| chr8.2 | exon | 28480979 | 28481108 | 28480979 | ID=MS.gene012024.t1.exon3;Parent=MS.gene012024.t1 |
| chr8.2 | CDS | 28480979 | 28481108 | 28480979 | ID=cds.MS.gene012024.t1;Parent=MS.gene012024.t1 |
| chr8.2 | exon | 28481202 | 28481874 | 28481202 | ID=MS.gene012024.t1.exon4;Parent=MS.gene012024.t1 |
| chr8.2 | CDS | 28481202 | 28481874 | 28481202 | ID=cds.MS.gene012024.t1;Parent=MS.gene012024.t1 |
| Gene Sequence |
| Protein sequence |
