Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012267.t1 | XP_013458471.1 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 6.60E-264 | 919.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012267.t1 | O64851 | 67.1 | 414 | 130 | 4 | 60 | 470 | 117 | 527 | 5.2e-153 | 542.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012267.t1 | A0A072US72 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 4.7e-264 | 919.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57574 | MS.gene012267 | PPI |
| MS.gene026101 | MS.gene012267 | PPI |
| MS.gene012267 | MS.gene85613 | PPI |
| MS.gene012267 | MS.gene051854 | PPI |
| MS.gene84687 | MS.gene012267 | PPI |
| MS.gene012267 | MS.gene025134 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012267.t1 | MTR_4g126020 | 96.646 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 0.0 | 957 |
| MS.gene012267.t1 | MTR_2g039910 | 74.409 | 465 | 92 | 4 | 21 | 473 | 57 | 506 | 0.0 | 710 |
| MS.gene012267.t1 | MTR_4g126020 | 97.361 | 341 | 8 | 1 | 1 | 341 | 1 | 340 | 0.0 | 696 |
| MS.gene012267.t1 | MTR_8g017580 | 64.169 | 427 | 146 | 3 | 52 | 477 | 84 | 504 | 0.0 | 560 |
| MS.gene012267.t1 | MTR_2g099790 | 56.127 | 408 | 150 | 6 | 65 | 466 | 80 | 464 | 3.28e-152 | 441 |
| MS.gene012267.t1 | MTR_2g099790 | 55.181 | 415 | 150 | 7 | 65 | 466 | 80 | 471 | 3.33e-149 | 434 |
| MS.gene012267.t1 | MTR_8g085900 | 64.062 | 320 | 101 | 5 | 37 | 347 | 84 | 398 | 1.95e-142 | 423 |
| MS.gene012267.t1 | MTR_8g085900 | 44.706 | 85 | 34 | 3 | 360 | 434 | 513 | 594 | 1.88e-12 | 70.1 |
| MS.gene012267.t1 | MTR_3g083570 | 68.100 | 279 | 81 | 3 | 86 | 357 | 6 | 283 | 2.89e-139 | 402 |
| MS.gene012267.t1 | MTR_3g083570 | 71.429 | 259 | 70 | 2 | 86 | 341 | 6 | 263 | 2.06e-137 | 396 |
| MS.gene012267.t1 | MTR_1g054735 | 69.708 | 274 | 82 | 1 | 75 | 348 | 67 | 339 | 8.49e-136 | 403 |
| MS.gene012267.t1 | MTR_1g054735 | 47.059 | 85 | 36 | 3 | 384 | 468 | 488 | 563 | 8.74e-13 | 70.9 |
| MS.gene012267.t1 | MTR_8g017580 | 71.264 | 261 | 73 | 2 | 52 | 312 | 84 | 342 | 1.11e-133 | 390 |
| MS.gene012267.t1 | MTR_2g099790 | 60.968 | 310 | 117 | 4 | 65 | 371 | 80 | 388 | 8.60e-132 | 389 |
| MS.gene012267.t1 | MTR_1g060590 | 47.738 | 442 | 174 | 8 | 65 | 452 | 46 | 484 | 8.21e-125 | 373 |
| MS.gene012267.t1 | MTR_3g083570 | 69.469 | 226 | 65 | 2 | 86 | 308 | 6 | 230 | 7.55e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012267.t1 | AT4G33050 | 69.586 | 411 | 112 | 3 | 60 | 470 | 87 | 484 | 0.0 | 581 |
| MS.gene012267.t1 | AT4G33050 | 69.586 | 411 | 112 | 3 | 60 | 470 | 159 | 556 | 0.0 | 580 |
| MS.gene012267.t1 | AT4G33050 | 63.697 | 449 | 112 | 4 | 60 | 470 | 87 | 522 | 0.0 | 563 |
| MS.gene012267.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 546 |
| MS.gene012267.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 546 |
| MS.gene012267.t1 | AT5G57010 | 59.912 | 454 | 146 | 6 | 26 | 471 | 70 | 495 | 0.0 | 545 |
| MS.gene012267.t1 | AT2G26190 | 80.220 | 273 | 53 | 1 | 69 | 341 | 126 | 397 | 2.66e-160 | 461 |
| MS.gene012267.t1 | AT3G13600 | 68.056 | 288 | 86 | 3 | 70 | 352 | 96 | 382 | 6.22e-142 | 420 |
| MS.gene012267.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.17e-15 | 80.1 |
| MS.gene012267.t1 | AT3G13600 | 68.056 | 288 | 86 | 3 | 70 | 352 | 96 | 382 | 6.22e-142 | 420 |
| MS.gene012267.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.17e-15 | 80.1 |
| MS.gene012267.t1 | AT4G33050 | 76.800 | 250 | 57 | 1 | 60 | 309 | 87 | 335 | 1.07e-137 | 400 |
| MS.gene012267.t1 | AT3G58480 | 70.000 | 270 | 77 | 2 | 82 | 348 | 98 | 366 | 1.33e-135 | 403 |
| MS.gene012267.t1 | AT3G58480 | 38.889 | 90 | 40 | 2 | 372 | 446 | 467 | 556 | 1.30e-12 | 70.5 |
| MS.gene012267.t1 | AT3G52870 | 47.912 | 407 | 169 | 6 | 82 | 446 | 49 | 454 | 3.00e-130 | 385 |
| MS.gene012267.t1 | AT4G33050 | 66.667 | 288 | 57 | 2 | 60 | 309 | 87 | 373 | 6.50e-130 | 381 |
| MS.gene012267.t1 | AT4G33050 | 80.702 | 171 | 32 | 1 | 60 | 230 | 87 | 256 | 1.23e-96 | 292 |
Find 86 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACTTGCAGTTGAAAT+TGG | 0.107738 | 8.1:-6063023 | None:intergenic |
| TGAAGTACTCATCTTATTAT+TGG | 0.159172 | 8.1:-6060786 | None:intergenic |
| AAAGAATTTATAAGCTTTCT+TGG | 0.184873 | 8.1:+6062474 | MS.gene012267:CDS |
| CTAGGTGACATTCTAACTTT+TGG | 0.235750 | 8.1:-6062966 | None:intergenic |
| TTCACATGTATTATGATATC+TGG | 0.237835 | 8.1:+6061544 | MS.gene012267:CDS |
| CAATTTCAACTGCAAGTTAA+AGG | 0.240605 | 8.1:+6063024 | MS.gene012267:CDS |
| CAACGTGACACAGCAGTTTC+AGG | 0.247868 | 8.1:-6061145 | None:intergenic |
| GCAGTTGAAATTGGGTTTCT+TGG | 0.258697 | 8.1:-6063014 | None:intergenic |
| CGTGACATCAACTCATAAAA+AGG | 0.267494 | 8.1:+6062749 | MS.gene012267:CDS |
| CGTTGTAGAACAGTGCTTCT+TGG | 0.292853 | 8.1:-6061771 | None:intergenic |
| CAACATTCAAGCTTTCTTGC+TGG | 0.301504 | 8.1:+6062097 | MS.gene012267:CDS |
| ATGTTTGAATTGATCACTTT+TGG | 0.305545 | 8.1:-6060897 | None:intergenic |
| GATGATACTTATTCAATTGT+TGG | 0.363001 | 8.1:+6062648 | MS.gene012267:CDS |
| TGAATAAGTATCATCGTCTA+TGG | 0.363512 | 8.1:-6062640 | None:intergenic |
| TCTGTTACTGATTTGTCAAA+TGG | 0.365989 | 8.1:+6060761 | MS.gene012267:CDS |
| GGTTGGAAAAGGTTTATCTA+AGG | 0.378650 | 8.1:+6061312 | MS.gene012267:intron |
| ATTGACCCGCGTCATCGATA+TGG | 0.379869 | 8.1:+6061513 | MS.gene012267:CDS |
| TTTAACTTGCAGTTGAAATT+GGG | 0.397772 | 8.1:-6063022 | None:intergenic |
| TTGTCTTGCAAGTGGTCAAC+TGG | 0.401784 | 8.1:+6062804 | MS.gene012267:CDS |
| ATATGAAGTAATTGTTGAAA+AGG | 0.407093 | 8.1:+6061955 | MS.gene012267:CDS |
| CGCCAATGCATTAAATATCT+AGG | 0.411900 | 8.1:+6061792 | MS.gene012267:CDS |
| GCAGCATCAAGCTCAGAAAC+TGG | 0.423052 | 8.1:-6060974 | None:intergenic |
| CTTTATCTTGAACAAATGAA+TGG | 0.423444 | 8.1:-6060856 | None:intergenic |
| TGCAAGTGGTCAACTGGAGC+TGG | 0.427085 | 8.1:+6062810 | MS.gene012267:CDS |
| GTCCTAGATATTTAATGCAT+TGG | 0.427708 | 8.1:-6061794 | None:intergenic |
| TCTTTGAAGTTCTCTTCTGT+TGG | 0.432145 | 8.1:-6062456 | None:intergenic |
| GTCACCTAGGCTTGTGTACA+TGG | 0.437362 | 8.1:+6062980 | MS.gene012267:CDS |
| ATAATTTGTAGGTTGGATGT+TGG | 0.439407 | 8.1:+6061717 | MS.gene012267:intron |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 8.1:+6061956 | MS.gene012267:CDS |
| TCAAGCTCAGAAACTGGTCT+TGG | 0.453433 | 8.1:-6060968 | None:intergenic |
| AGCAAGAACAAGAGCAGCTA+AGG | 0.455856 | 8.1:+6061174 | MS.gene012267:CDS |
| CATTCAAGCTTTCTTGCTGG+TGG | 0.460779 | 8.1:+6062100 | MS.gene012267:CDS |
| GTAGGAACCTTTGTTTGTTG+TGG | 0.471273 | 8.1:-6062699 | None:intergenic |
| TGAAGTTCTCTTCTGTTGGA+TGG | 0.474618 | 8.1:-6062452 | None:intergenic |
| CTAGGCCTAGGAGAAGGAAT+TGG | 0.478665 | 8.1:-6062942 | None:intergenic |
| AGAGTTATGGTGGAAAGCAT+TGG | 0.479204 | 8.1:+6061072 | MS.gene012267:CDS |
| AGGTTTATCTAAGGATGAAA+AGG | 0.485144 | 8.1:+6061321 | MS.gene012267:CDS |
| TTATCATTGACATTGACCTT+AGG | 0.486850 | 8.1:-6062723 | None:intergenic |
| CTGCAAGGTTTCTTCTAGTA+CGG | 0.488174 | 8.1:-6061030 | None:intergenic |
| AATTGTTGAAAAGGGAAGGT+TGG | 0.496058 | 8.1:+6061964 | MS.gene012267:CDS |
| CAGTTGTAGTGGAAGAGTTA+TGG | 0.497630 | 8.1:+6061059 | MS.gene012267:CDS |
| ACTGGAGCTGGTCCACGTAT+TGG | 0.499952 | 8.1:+6062822 | MS.gene012267:CDS |
| TGAAACTGCTGTGTCACGTT+GGG | 0.503731 | 8.1:+6061147 | MS.gene012267:CDS |
| CTGTTACTGATTTGTCAAAT+GGG | 0.503989 | 8.1:+6060762 | MS.gene012267:CDS |
| TTGGTCCAATTCCTTCTCCT+AGG | 0.504331 | 8.1:+6062937 | MS.gene012267:CDS |
| AACAAGTTCATTTGTCTCCA+AGG | 0.506581 | 8.1:+6062889 | MS.gene012267:CDS |
| GTACTGATGAGAAATCAAAA+TGG | 0.515735 | 8.1:+6062014 | MS.gene012267:CDS |
| GGATGGTAGTGTCCACTGTA+TGG | 0.524176 | 8.1:-6062435 | None:intergenic |
| GGTTGGTGTATAAACAAGAT+GGG | 0.536691 | 8.1:+6061981 | MS.gene012267:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.537642 | 8.1:+6061723 | MS.gene012267:intron |
| GAAATTGGGTTTCTTGGACT+AGG | 0.538092 | 8.1:-6063008 | None:intergenic |
| AGGTTGGTGTATAAACAAGA+TGG | 0.542312 | 8.1:+6061980 | MS.gene012267:CDS |
| GGTGGTGCAACCACAGCAGC+TGG | 0.542342 | 8.1:+6062118 | MS.gene012267:CDS |
| CACTGCAAGAGCCTTGTATG+TGG | 0.543226 | 8.1:+6062051 | MS.gene012267:CDS |
| AAGTAATTGTTGAAAAGGGA+AGG | 0.544030 | 8.1:+6061960 | MS.gene012267:CDS |
| AACAAAGGTTCCTACTCCTA+AGG | 0.545400 | 8.1:+6062707 | MS.gene012267:CDS |
| CTTTCAAGAATCATGTGTTG+AGG | 0.549804 | 8.1:-6060830 | None:intergenic |
| TTGCAGCATTTAACGCCTCA+AGG | 0.550558 | 8.1:+6062778 | MS.gene012267:CDS |
| TGTAGACCTCACAAATGTAA+AGG | 0.560440 | 8.1:+6062506 | MS.gene012267:CDS |
| ACACTTGCAGTCAAAAGCAT+TGG | 0.561007 | 8.1:+6062866 | MS.gene012267:CDS |
| TATTTACCTTTACATTTGTG+AGG | 0.561561 | 8.1:-6062512 | None:intergenic |
| TGCAGATTGTGCAGTTGTAG+TGG | 0.569563 | 8.1:+6061048 | MS.gene012267:CDS |
| CTGCAAGAGCCTTGTATGTG+GGG | 0.574800 | 8.1:+6062053 | MS.gene012267:CDS |
| AATCCCATGTACACAAGCCT+AGG | 0.574805 | 8.1:-6062984 | None:intergenic |
| GGTAGATTAGTAGCAAATCA+AGG | 0.575049 | 8.1:+6062139 | MS.gene012267:CDS |
| TTTGGGCTAGGCCTAGGAGA+AGG | 0.580187 | 8.1:-6062948 | None:intergenic |
| AAGAAAGCTTGAATGTTGAA+AGG | 0.583819 | 8.1:-6062092 | None:intergenic |
| GCTTCAGGCAGAGAAATCAC+TGG | 0.585648 | 8.1:-6060929 | None:intergenic |
| TACTAATCTACCAGCTGCTG+TGG | 0.585907 | 8.1:-6062128 | None:intergenic |
| ACTGCAAGAGCCTTGTATGT+GGG | 0.586114 | 8.1:+6062052 | MS.gene012267:CDS |
| TTGTAGTGGAAGAGTTATGG+TGG | 0.592352 | 8.1:+6061062 | MS.gene012267:CDS |
| CAATGAACCACAACAAACAA+AGG | 0.595908 | 8.1:+6062692 | MS.gene012267:CDS |
| CTGAAACTGCTGTGTCACGT+TGG | 0.601275 | 8.1:+6061146 | MS.gene012267:CDS |
| TCAAGATAAAGAACAAAACA+TGG | 0.608091 | 8.1:+6060868 | MS.gene012267:CDS |
| TTGACATTGACCTTAGGAGT+AGG | 0.608674 | 8.1:-6062717 | None:intergenic |
| ATAAGATGAGTACTTCAAGC+AGG | 0.611847 | 8.1:+6060792 | MS.gene012267:CDS |
| CTACAACTGCACAATCTGCA+AGG | 0.616966 | 8.1:-6061045 | None:intergenic |
| CAAGGAGATTGTCTTGCAAG+TGG | 0.635633 | 8.1:+6062796 | MS.gene012267:CDS |
| AGCAAATCAAGGTGTTCTTG+AGG | 0.643990 | 8.1:+6062150 | MS.gene012267:CDS |
| TCACCTAGGCTTGTGTACAT+GGG | 0.646732 | 8.1:+6062981 | MS.gene012267:CDS |
| CAAAAGTTAGAATGTCACCT+AGG | 0.655633 | 8.1:+6062967 | MS.gene012267:CDS |
| TTGTGTCCATATCGATGACG+CGG | 0.659774 | 8.1:-6061519 | None:intergenic |
| CAGGCTATTTGGCCATACAG+TGG | 0.663221 | 8.1:+6062423 | MS.gene012267:intron |
| TCACGAACACAACCAATACG+TGG | 0.684822 | 8.1:-6062834 | None:intergenic |
| CTTGCAAGACAATCTCCTTG+AGG | 0.686603 | 8.1:-6062793 | None:intergenic |
| TGTGTCCATATCGATGACGC+GGG | 0.693829 | 8.1:-6061518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGATAAATAATTTGT+AGG | + | chr8.1:6061706-6061725 | MS.gene012267:intron | 10.0% |
| !! | ATTTATAGAAAGAGTTTAAT+TGG | - | chr8.1:6062354-6062373 | None:intergenic | 15.0% |
| !! | TTAATTAGATACTATAAGAT+AGG | - | chr8.1:6061878-6061897 | None:intergenic | 15.0% |
| !! | AAAAATTAGCATTACAACAT+TGG | + | chr8.1:6061347-6061366 | MS.gene012267:CDS | 20.0% |
| !! | AAAGAATTTATAAGCTTTCT+TGG | + | chr8.1:6062474-6062493 | MS.gene012267:CDS | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | + | chr8.1:6061955-6061974 | MS.gene012267:CDS | 20.0% |
| !! | ATTTCATTAGTACTTTACAT+AGG | - | chr8.1:6062574-6062593 | None:intergenic | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | + | chr8.1:6061956-6061975 | MS.gene012267:CDS | 20.0% |
| !!! | ATGATAAATAATTTGTAGGT+TGG | + | chr8.1:6061710-6061729 | MS.gene012267:intron | 20.0% |
| !!! | TATTTTCAAAGTTATCTATG+TGG | + | chr8.1:6062297-6062316 | MS.gene012267:intron | 20.0% |
| !!! | TTCATGTTACTTTCTTTATA+TGG | + | chr8.1:6061238-6061257 | MS.gene012267:intron | 20.0% |
| ! | ATTAAATCCTTATGAAAAGC+TGG | - | chr8.1:6062196-6062215 | None:intergenic | 25.0% |
| ! | CTTTATCTTGAACAAATGAA+TGG | - | chr8.1:6060859-6060878 | None:intergenic | 25.0% |
| ! | GATGATACTTATTCAATTGT+TGG | + | chr8.1:6062648-6062667 | MS.gene012267:CDS | 25.0% |
| ! | TATTTACCTTTACATTTGTG+AGG | - | chr8.1:6062515-6062534 | None:intergenic | 25.0% |
| ! | TCAAGATAAAGAACAAAACA+TGG | + | chr8.1:6060868-6060887 | MS.gene012267:CDS | 25.0% |
| ! | TTCACATGTATTATGATATC+TGG | + | chr8.1:6061544-6061563 | MS.gene012267:CDS | 25.0% |
| ! | TTCTCATATAGATAACTTAC+TGG | - | chr8.1:6061819-6061838 | None:intergenic | 25.0% |
| ! | TTGATCCTCAAAATAATTAC+TGG | + | chr8.1:6062536-6062555 | MS.gene012267:intron | 25.0% |
| !! | ACTTCATATAGTTTTTGATC+TGG | + | chr8.1:6061455-6061474 | MS.gene012267:intron | 25.0% |
| !! | ATCTATATGAGAATCACTTT+TGG | + | chr8.1:6061826-6061845 | MS.gene012267:intron | 25.0% |
| !! | ATGTTTGAATTGATCACTTT+TGG | - | chr8.1:6060900-6060919 | None:intergenic | 25.0% |
| !! | TGAAGTACTCATCTTATTAT+TGG | - | chr8.1:6060789-6060808 | None:intergenic | 25.0% |
| !!! | AGTGTAACTCTTTTTTGTAA+AGG | + | chr8.1:6061291-6061310 | MS.gene012267:intron | 25.0% |
| !!! | TAACTCTTTTTTGTAAAGGT+TGG | + | chr8.1:6061295-6061314 | MS.gene012267:intron | 25.0% |
| !!! | TACTACCAGTAATTATTTTG+AGG | - | chr8.1:6062544-6062563 | None:intergenic | 25.0% |
| !!! | TTTTCAAGACTCAACAAATT+TGG | + | chr8.1:6062918-6062937 | MS.gene012267:CDS | 25.0% |
| !!! | TTTTTTGTAAAGGTTGGAAA+AGG | + | chr8.1:6061301-6061320 | MS.gene012267:intron | 25.0% |
| AAGAAAGCTTGAATGTTGAA+AGG | - | chr8.1:6062095-6062114 | None:intergenic | 30.0% | |
| AAGTAATTGTTGAAAAGGGA+AGG | + | chr8.1:6061960-6061979 | MS.gene012267:CDS | 30.0% | |
| ACATAAAAATGCAGGCTATT+TGG | + | chr8.1:6062412-6062431 | MS.gene012267:intron | 30.0% | |
| ACTGATGAAGATTGTAAAAC+AGG | + | chr8.1:6061649-6061668 | MS.gene012267:intron | 30.0% | |
| AGAGTTTACCAGTAGAAAAA+TGG | - | chr8.1:6061591-6061610 | None:intergenic | 30.0% | |
| AGGTTTATCTAAGGATGAAA+AGG | + | chr8.1:6061321-6061340 | MS.gene012267:CDS | 30.0% | |
| GTCCTAGATATTTAATGCAT+TGG | - | chr8.1:6061797-6061816 | None:intergenic | 30.0% | |
| TATCCACTACATAAAAATGC+AGG | + | chr8.1:6062404-6062423 | MS.gene012267:intron | 30.0% | |
| TGAATAAGTATCATCGTCTA+TGG | - | chr8.1:6062643-6062662 | None:intergenic | 30.0% | |
| TTATCATTGACATTGACCTT+AGG | - | chr8.1:6062726-6062745 | None:intergenic | 30.0% | |
| TTGTTGAGTCTTGAAAAACT+TGG | - | chr8.1:6062915-6062934 | None:intergenic | 30.0% | |
| ! | ATAATTTGTAGGTTGGATGT+TGG | + | chr8.1:6061717-6061736 | MS.gene012267:intron | 30.0% |
| ! | GTACTGATGAGAAATCAAAA+TGG | + | chr8.1:6062014-6062033 | MS.gene012267:CDS | 30.0% |
| ! | TAGGTGACATTCTAACTTTT+GGG | - | chr8.1:6062968-6062987 | None:intergenic | 30.0% |
| !! | CTGTTACTGATTTGTCAAAT+GGG | + | chr8.1:6060762-6060781 | MS.gene012267:CDS | 30.0% |
| !! | TCTGTTACTGATTTGTCAAA+TGG | + | chr8.1:6060761-6060780 | MS.gene012267:CDS | 30.0% |
| AACAAGTTCATTTGTCTCCA+AGG | + | chr8.1:6062889-6062908 | MS.gene012267:CDS | 35.0% | |
| AATTGTTGAAAAGGGAAGGT+TGG | + | chr8.1:6061964-6061983 | MS.gene012267:CDS | 35.0% | |
| ATAAGATGAGTACTTCAAGC+AGG | + | chr8.1:6060792-6060811 | MS.gene012267:CDS | 35.0% | |
| CAAAAGTTAGAATGTCACCT+AGG | + | chr8.1:6062967-6062986 | MS.gene012267:CDS | 35.0% | |
| CAATGAACCACAACAAACAA+AGG | + | chr8.1:6062692-6062711 | MS.gene012267:CDS | 35.0% | |
| CGCCAATGCATTAAATATCT+AGG | + | chr8.1:6061792-6061811 | MS.gene012267:CDS | 35.0% | |
| CGTGACATCAACTCATAAAA+AGG | + | chr8.1:6062749-6062768 | MS.gene012267:CDS | 35.0% | |
| CTTTCAAGAATCATGTGTTG+AGG | - | chr8.1:6060833-6060852 | None:intergenic | 35.0% | |
| GAAGAAAAAACAACTGCTTC+AGG | - | chr8.1:6060947-6060966 | None:intergenic | 35.0% | |
| GGTAGATTAGTAGCAAATCA+AGG | + | chr8.1:6062139-6062158 | MS.gene012267:CDS | 35.0% | |
| GGTTGGAAAAGGTTTATCTA+AGG | + | chr8.1:6061312-6061331 | MS.gene012267:intron | 35.0% | |
| TATGTGGGGAAAAAGCAAAA+GGG | + | chr8.1:6062067-6062086 | MS.gene012267:CDS | 35.0% | |
| TGTAGACCTCACAAATGTAA+AGG | + | chr8.1:6062506-6062525 | MS.gene012267:CDS | 35.0% | |
| ! | CTAGGTGACATTCTAACTTT+TGG | - | chr8.1:6062969-6062988 | None:intergenic | 35.0% |
| ! | GGTTGGTGTATAAACAAGAT+GGG | + | chr8.1:6061981-6062000 | MS.gene012267:CDS | 35.0% |
| ! | TAGCCTGCATTTTTATGTAG+TGG | - | chr8.1:6062410-6062429 | None:intergenic | 35.0% |
| !! | AGGTTGGTGTATAAACAAGA+TGG | + | chr8.1:6061980-6061999 | MS.gene012267:CDS | 35.0% |
| !! | TCTTTGAAGTTCTCTTCTGT+TGG | - | chr8.1:6062459-6062478 | None:intergenic | 35.0% |
| AACAAAGGTTCCTACTCCTA+AGG | + | chr8.1:6062707-6062726 | MS.gene012267:CDS | 40.0% | |
| AGTCTTGAAAAACTTGGCCT+TGG | - | chr8.1:6062909-6062928 | None:intergenic | 40.0% | |
| ATCCTTATGAAAAGCTGGAG+TGG | - | chr8.1:6062191-6062210 | None:intergenic | 40.0% | |
| CAACATTCAAGCTTTCTTGC+TGG | + | chr8.1:6062097-6062116 | MS.gene012267:CDS | 40.0% | |
| CTGCAAGGTTTCTTCTAGTA+CGG | - | chr8.1:6061033-6061052 | None:intergenic | 40.0% | |
| GAAATTGGGTTTCTTGGACT+AGG | - | chr8.1:6063011-6063030 | None:intergenic | 40.0% | |
| GCAGTTGAAATTGGGTTTCT+TGG | - | chr8.1:6063017-6063036 | None:intergenic | 40.0% | |
| GTATGTGGGGAAAAAGCAAA+AGG | + | chr8.1:6062066-6062085 | MS.gene012267:CDS | 40.0% | |
| TGAAAAGCTGGAGTGGAATT+TGG | - | chr8.1:6062184-6062203 | None:intergenic | 40.0% | |
| TGAAGTTCTCTTCTGTTGGA+TGG | - | chr8.1:6062455-6062474 | None:intergenic | 40.0% | |
| TTGACATTGACCTTAGGAGT+AGG | - | chr8.1:6062720-6062739 | None:intergenic | 40.0% | |
| ! | ACACTTGCAGTCAAAAGCAT+TGG | + | chr8.1:6062866-6062885 | MS.gene012267:CDS | 40.0% |
| ! | AGAGTTATGGTGGAAAGCAT+TGG | + | chr8.1:6061072-6061091 | MS.gene012267:CDS | 40.0% |
| ! | AGCAAATCAAGGTGTTCTTG+AGG | + | chr8.1:6062150-6062169 | MS.gene012267:CDS | 40.0% |
| ! | AGGAGCTGAAGTGTTCTATA+TGG | + | chr8.1:6061669-6061688 | MS.gene012267:intron | 40.0% |
| ! | CAGTTGTAGTGGAAGAGTTA+TGG | + | chr8.1:6061059-6061078 | MS.gene012267:CDS | 40.0% |
| ! | GACATTCTAACTTTTGGGCT+AGG | - | chr8.1:6062963-6062982 | None:intergenic | 40.0% |
| ! | GTAGGAACCTTTGTTTGTTG+TGG | - | chr8.1:6062702-6062721 | None:intergenic | 40.0% |
| ! | TTCCACTCCAGCTTTTCATA+AGG | + | chr8.1:6062186-6062205 | MS.gene012267:intron | 40.0% |
| ! | TTGTAGTGGAAGAGTTATGG+TGG | + | chr8.1:6061062-6061081 | MS.gene012267:CDS | 40.0% |
| !!! | TTGCTTTTTCCCCACATACA+AGG | - | chr8.1:6062065-6062084 | None:intergenic | 40.0% |
| AATCCCATGTACACAAGCCT+AGG | - | chr8.1:6062987-6063006 | None:intergenic | 45.0% | |
| AGCAAGAACAAGAGCAGCTA+AGG | + | chr8.1:6061174-6061193 | MS.gene012267:CDS | 45.0% | |
| CAAGGAGATTGTCTTGCAAG+TGG | + | chr8.1:6062796-6062815 | MS.gene012267:CDS | 45.0% | |
| CATTCAAGCTTTCTTGCTGG+TGG | + | chr8.1:6062100-6062119 | MS.gene012267:CDS | 45.0% | |
| CGTTGTAGAACAGTGCTTCT+TGG | - | chr8.1:6061774-6061793 | None:intergenic | 45.0% | |
| CTACAACTGCACAATCTGCA+AGG | - | chr8.1:6061048-6061067 | None:intergenic | 45.0% | |
| CTTGCAAGACAATCTCCTTG+AGG | - | chr8.1:6062796-6062815 | None:intergenic | 45.0% | |
| TACTAATCTACCAGCTGCTG+TGG | - | chr8.1:6062131-6062150 | None:intergenic | 45.0% | |
| TCACCTAGGCTTGTGTACAT+GGG | + | chr8.1:6062981-6063000 | MS.gene012267:CDS | 45.0% | |
| TCACGAACACAACCAATACG+TGG | - | chr8.1:6062837-6062856 | None:intergenic | 45.0% | |
| TGAAACTGCTGTGTCACGTT+GGG | + | chr8.1:6061147-6061166 | MS.gene012267:CDS | 45.0% | |
| TGCAGATTGTGCAGTTGTAG+TGG | + | chr8.1:6061048-6061067 | MS.gene012267:CDS | 45.0% | |
| TTGCAGCATTTAACGCCTCA+AGG | + | chr8.1:6062778-6062797 | MS.gene012267:CDS | 45.0% | |
| TTGGTCCAATTCCTTCTCCT+AGG | + | chr8.1:6062937-6062956 | MS.gene012267:CDS | 45.0% | |
| TTGTCTTGCAAGTGGTCAAC+TGG | + | chr8.1:6062804-6062823 | MS.gene012267:CDS | 45.0% | |
| TTGTGTCCATATCGATGACG+CGG | - | chr8.1:6061522-6061541 | None:intergenic | 45.0% | |
| ! | ACTGCAAGAGCCTTGTATGT+GGG | + | chr8.1:6062052-6062071 | MS.gene012267:CDS | 45.0% |
| ! | TCAAGCTCAGAAACTGGTCT+TGG | - | chr8.1:6060971-6060990 | None:intergenic | 45.0% |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | + | chr8.1:6061723-6061742 | MS.gene012267:intron | 45.0% |
| !! | GCTTTTGACTGCAAGTGTTC+AGG | - | chr8.1:6062864-6062883 | None:intergenic | 45.0% |
| !!! | GTGCACAGCCATTTTTCTAC+TGG | + | chr8.1:6061580-6061599 | MS.gene012267:CDS | 45.0% |
| ATTGACCCGCGTCATCGATA+TGG | + | chr8.1:6061513-6061532 | MS.gene012267:CDS | 50.0% | |
| CAACGTGACACAGCAGTTTC+AGG | - | chr8.1:6061148-6061167 | None:intergenic | 50.0% | |
| CAGGCTATTTGGCCATACAG+TGG | + | chr8.1:6062423-6062442 | MS.gene012267:intron | 50.0% | |
| CATCGTCTATGGCACATCTC+TGG | - | chr8.1:6062632-6062651 | None:intergenic | 50.0% | |
| CTAGGCCTAGGAGAAGGAAT+TGG | - | chr8.1:6062945-6062964 | None:intergenic | 50.0% | |
| CTGAAACTGCTGTGTCACGT+TGG | + | chr8.1:6061146-6061165 | MS.gene012267:CDS | 50.0% | |
| GCAGCATCAAGCTCAGAAAC+TGG | - | chr8.1:6060977-6060996 | None:intergenic | 50.0% | |
| GCTTCAGGCAGAGAAATCAC+TGG | - | chr8.1:6060932-6060951 | None:intergenic | 50.0% | |
| GTCACCTAGGCTTGTGTACA+TGG | + | chr8.1:6062980-6062999 | MS.gene012267:CDS | 50.0% | |
| TGTGTCCATATCGATGACGC+GGG | - | chr8.1:6061521-6061540 | None:intergenic | 50.0% | |
| ! | CACTGCAAGAGCCTTGTATG+TGG | + | chr8.1:6062051-6062070 | MS.gene012267:CDS | 50.0% |
| ! | CTGCAAGAGCCTTGTATGTG+GGG | + | chr8.1:6062053-6062072 | MS.gene012267:CDS | 50.0% |
| ! | GGATGGTAGTGTCCACTGTA+TGG | - | chr8.1:6062438-6062457 | None:intergenic | 50.0% |
| !! | CTAACTTTTGGGCTAGGCCT+AGG | - | chr8.1:6062957-6062976 | None:intergenic | 50.0% |
| ACTGGAGCTGGTCCACGTAT+TGG | + | chr8.1:6062822-6062841 | MS.gene012267:CDS | 55.0% | |
| TGCAAGTGGTCAACTGGAGC+TGG | + | chr8.1:6062810-6062829 | MS.gene012267:CDS | 55.0% | |
| ! | TTTGGGCTAGGCCTAGGAGA+AGG | - | chr8.1:6062951-6062970 | None:intergenic | 55.0% |
| GGTGGTGCAACCACAGCAGC+TGG | + | chr8.1:6062118-6062137 | MS.gene012267:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6060752 | 6063043 | 6060752 | ID=MS.gene012267 |
| chr8.1 | mRNA | 6060752 | 6063043 | 6060752 | ID=MS.gene012267.t1;Parent=MS.gene012267 |
| chr8.1 | exon | 6060752 | 6061195 | 6060752 | ID=MS.gene012267.t1.exon1;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6060752 | 6061195 | 6060752 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6061313 | 6061378 | 6061313 | ID=MS.gene012267.t1.exon2;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6061313 | 6061378 | 6061313 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6061513 | 6061601 | 6061513 | ID=MS.gene012267.t1.exon3;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6061513 | 6061601 | 6061513 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6061728 | 6061818 | 6061728 | ID=MS.gene012267.t1.exon4;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6061728 | 6061818 | 6061728 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6061941 | 6062171 | 6061941 | ID=MS.gene012267.t1.exon5;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6061941 | 6062171 | 6061941 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6062426 | 6062527 | 6062426 | ID=MS.gene012267.t1.exon6;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6062426 | 6062527 | 6062426 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| chr8.1 | exon | 6062633 | 6063043 | 6062633 | ID=MS.gene012267.t1.exon7;Parent=MS.gene012267.t1 |
| chr8.1 | CDS | 6062633 | 6063043 | 6062633 | ID=cds.MS.gene012267.t1;Parent=MS.gene012267.t1 |
| Gene Sequence |
| Protein sequence |
