Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57574.t1 | XP_013458471.1 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 3.30E-263 | 917.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57574.t1 | O64851 | 67.1 | 414 | 130 | 4 | 60 | 470 | 117 | 527 | 1.2e-152 | 541.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57574.t1 | A0A072US72 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 2.3e-263 | 917.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051854 | MS.gene57574 | 0.94535 | 3.60E-104 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene57574 | MS.gene026101 | PPI |
| MS.gene57574 | MS.gene012267 | PPI |
| MS.gene57574 | MS.gene84687 | PPI |
| MS.gene57574 | MS.gene85613 | PPI |
| MS.gene57574 | MS.gene051854 | PPI |
| MS.gene57574 | MS.gene025134 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57574.t1 | MTR_4g126020 | 96.646 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 0.0 | 954 |
| MS.gene57574.t1 | MTR_2g039910 | 74.624 | 465 | 91 | 4 | 21 | 473 | 57 | 506 | 0.0 | 707 |
| MS.gene57574.t1 | MTR_4g126020 | 97.361 | 341 | 8 | 1 | 1 | 341 | 1 | 340 | 0.0 | 692 |
| MS.gene57574.t1 | MTR_8g017580 | 64.403 | 427 | 145 | 3 | 52 | 477 | 84 | 504 | 0.0 | 559 |
| MS.gene57574.t1 | MTR_2g099790 | 56.618 | 408 | 148 | 6 | 65 | 466 | 80 | 464 | 1.03e-152 | 443 |
| MS.gene57574.t1 | MTR_2g099790 | 55.663 | 415 | 148 | 7 | 65 | 466 | 80 | 471 | 4.56e-150 | 436 |
| MS.gene57574.t1 | MTR_8g085900 | 64.688 | 320 | 99 | 5 | 37 | 347 | 84 | 398 | 1.64e-143 | 426 |
| MS.gene57574.t1 | MTR_8g085900 | 44.706 | 85 | 34 | 3 | 360 | 434 | 513 | 594 | 2.06e-12 | 69.7 |
| MS.gene57574.t1 | MTR_3g083570 | 68.459 | 279 | 80 | 3 | 86 | 357 | 6 | 283 | 1.39e-139 | 402 |
| MS.gene57574.t1 | MTR_3g083570 | 71.815 | 259 | 69 | 2 | 86 | 341 | 6 | 263 | 9.30e-138 | 397 |
| MS.gene57574.t1 | MTR_1g054735 | 69.708 | 274 | 82 | 1 | 75 | 348 | 67 | 339 | 5.88e-136 | 404 |
| MS.gene57574.t1 | MTR_1g054735 | 47.059 | 85 | 36 | 3 | 384 | 468 | 488 | 563 | 9.55e-13 | 70.9 |
| MS.gene57574.t1 | MTR_8g017580 | 71.648 | 261 | 72 | 2 | 52 | 312 | 84 | 342 | 1.81e-133 | 390 |
| MS.gene57574.t1 | MTR_2g099790 | 61.613 | 310 | 115 | 4 | 65 | 371 | 80 | 388 | 1.10e-132 | 391 |
| MS.gene57574.t1 | MTR_1g060590 | 47.964 | 442 | 173 | 8 | 65 | 452 | 46 | 484 | 4.34e-125 | 374 |
| MS.gene57574.t1 | MTR_3g083570 | 69.912 | 226 | 64 | 2 | 86 | 308 | 6 | 230 | 2.96e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57574.t1 | AT4G33050 | 69.830 | 411 | 111 | 3 | 60 | 470 | 87 | 484 | 0.0 | 582 |
| MS.gene57574.t1 | AT4G33050 | 69.830 | 411 | 111 | 3 | 60 | 470 | 159 | 556 | 0.0 | 580 |
| MS.gene57574.t1 | AT4G33050 | 63.920 | 449 | 111 | 4 | 60 | 470 | 87 | 522 | 0.0 | 563 |
| MS.gene57574.t1 | AT5G57010 | 58.144 | 485 | 159 | 8 | 3 | 471 | 39 | 495 | 0.0 | 546 |
| MS.gene57574.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 545 |
| MS.gene57574.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 545 |
| MS.gene57574.t1 | AT2G26190 | 80.220 | 273 | 53 | 1 | 69 | 341 | 126 | 397 | 4.68e-160 | 460 |
| MS.gene57574.t1 | AT3G13600 | 62.500 | 328 | 111 | 4 | 30 | 352 | 62 | 382 | 1.83e-142 | 422 |
| MS.gene57574.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.11e-15 | 80.1 |
| MS.gene57574.t1 | AT3G13600 | 62.500 | 328 | 111 | 4 | 30 | 352 | 62 | 382 | 1.83e-142 | 422 |
| MS.gene57574.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.11e-15 | 80.1 |
| MS.gene57574.t1 | AT4G33050 | 77.200 | 250 | 56 | 1 | 60 | 309 | 87 | 335 | 4.96e-138 | 400 |
| MS.gene57574.t1 | AT3G58480 | 70.000 | 270 | 77 | 2 | 82 | 348 | 98 | 366 | 1.65e-135 | 403 |
| MS.gene57574.t1 | AT3G58480 | 38.889 | 90 | 40 | 2 | 372 | 446 | 467 | 556 | 1.43e-12 | 70.1 |
| MS.gene57574.t1 | AT3G52870 | 48.157 | 407 | 168 | 6 | 82 | 446 | 49 | 454 | 1.33e-130 | 386 |
| MS.gene57574.t1 | AT4G33050 | 67.014 | 288 | 56 | 2 | 60 | 309 | 87 | 373 | 1.97e-130 | 383 |
| MS.gene57574.t1 | AT4G33050 | 81.287 | 171 | 31 | 1 | 60 | 230 | 87 | 256 | 5.05e-97 | 293 |
Find 88 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACTTGCAGTTGAAAT+TGG | 0.107738 | 8.4:-9118976 | None:intergenic |
| TGAAGTACTCATCTTATTAT+TGG | 0.159172 | 8.4:-9116795 | None:intergenic |
| AAAGAATTTATAAGCTTTCT+TGG | 0.184873 | 8.4:+9118429 | MS.gene57574:CDS |
| CTAGGTGACATTCTAACTTT+TGG | 0.235750 | 8.4:-9118919 | None:intergenic |
| TTCACATGTATTATGATATC+TGG | 0.237835 | 8.4:+9117529 | MS.gene57574:CDS |
| CAATTTCAACTGCAAGTTAA+AGG | 0.240605 | 8.4:+9118977 | MS.gene57574:CDS |
| CAACGTGACACAGCAGTTTC+AGG | 0.247868 | 8.4:-9117154 | None:intergenic |
| GCAGTTGAAATTGGGTTTCT+TGG | 0.258697 | 8.4:-9118967 | None:intergenic |
| ATGCTTGAATTGATCACTTT+TGG | 0.264241 | 8.4:-9116906 | None:intergenic |
| TGTGACATCAACTCATAAAA+AGG | 0.281124 | 8.4:+9118702 | MS.gene57574:CDS |
| CGTTGTAGAACAGTGCTTCT+TGG | 0.292853 | 8.4:-9117753 | None:intergenic |
| CAACATTCAAGCTTTCTTGC+TGG | 0.301504 | 8.4:+9118051 | MS.gene57574:CDS |
| CGCCAATGTATTAAATATCT+TGG | 0.312762 | 8.4:+9117774 | MS.gene57574:CDS |
| GATGATACTTATTCAATTGT+TGG | 0.336592 | 8.4:+9118601 | MS.gene57574:CDS |
| TGAATAAGTATCATCATCTA+TGG | 0.366618 | 8.4:-9118593 | None:intergenic |
| ATTGACCCGCGTCATCGATA+TGG | 0.379869 | 8.4:+9117498 | MS.gene57574:CDS |
| GGTTGGAAAAGGTTTATCTA+AGG | 0.388520 | 8.4:+9117314 | MS.gene57574:intron |
| TCTGTTACTGATTTGTCAAA+TGG | 0.389009 | 8.4:+9116770 | MS.gene57574:CDS |
| TTTAACTTGCAGTTGAAATT+GGG | 0.397772 | 8.4:-9118975 | None:intergenic |
| TTGTCTTGCAAGTGGTCAAC+TGG | 0.401784 | 8.4:+9118757 | MS.gene57574:CDS |
| GGCAGAGAAATCACTGGAAC+TGG | 0.405732 | 8.4:-9116932 | None:intergenic |
| ATATGAAGTAATTGTTGAAA+AGG | 0.407093 | 8.4:+9117909 | MS.gene57574:CDS |
| CTTTATCTTGAACAAATGAA+TGG | 0.423444 | 8.4:-9116865 | None:intergenic |
| TGCAAGTGGTCAACTGGAGC+TGG | 0.427085 | 8.4:+9118763 | MS.gene57574:CDS |
| TCTTTGAAGTTCTCTTCTGT+TGG | 0.432145 | 8.4:-9118411 | None:intergenic |
| GTCACCTAGGCTTGTGTACA+TGG | 0.437362 | 8.4:+9118933 | MS.gene57574:CDS |
| ATAATTTGTAGGTTGGATGT+TGG | 0.439407 | 8.4:+9117699 | MS.gene57574:intron |
| TCAAGCTCAGAAACCGGTCT+TGG | 0.450175 | 8.4:-9116977 | None:intergenic |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 8.4:+9117910 | MS.gene57574:CDS |
| TGCTGCAACTACACTTCAAA+AGG | 0.455467 | 8.4:+9117003 | MS.gene57574:CDS |
| AGCAAGAACAAGAGCAGCTA+AGG | 0.455856 | 8.4:+9117183 | MS.gene57574:CDS |
| TGCAGATTGTGCAGTGGTTG+TGG | 0.458589 | 8.4:+9117057 | MS.gene57574:CDS |
| CATTCAAGCTTTCTTGCTGG+TGG | 0.460779 | 8.4:+9118054 | MS.gene57574:CDS |
| GTAGGAACCTTTGTTTGTTG+TGG | 0.471273 | 8.4:-9118652 | None:intergenic |
| TGAAGTTCTCTTCTGTTGGA+TGG | 0.474618 | 8.4:-9118407 | None:intergenic |
| CAGTGGTTGTGGAAGAGTTA+TGG | 0.477590 | 8.4:+9117068 | MS.gene57574:CDS |
| CTAGGCCTAGGAGAAGGAAT+TGG | 0.478665 | 8.4:-9118895 | None:intergenic |
| AGAGTTATGGTGGAAAGCAT+TGG | 0.479204 | 8.4:+9117081 | MS.gene57574:CDS |
| AGGTTTATCTAAGGATGAAA+AGG | 0.485144 | 8.4:+9117323 | MS.gene57574:CDS |
| TTATCATTGACATTGACCTT+AGG | 0.486850 | 8.4:-9118676 | None:intergenic |
| CTGCAAGGTTTCTTCTAGTA+CGG | 0.488174 | 8.4:-9117039 | None:intergenic |
| AATTGTTGAAAAGGGAAGGT+TGG | 0.496058 | 8.4:+9117918 | MS.gene57574:CDS |
| ACTGGAGCTGGTCCACGTAT+TGG | 0.499952 | 8.4:+9118775 | MS.gene57574:CDS |
| CTGTTACTGATTTGTCAAAT+GGG | 0.501575 | 8.4:+9116771 | MS.gene57574:CDS |
| TGAAACTGCTGTGTCACGTT+GGG | 0.503731 | 8.4:+9117156 | MS.gene57574:CDS |
| TTGGTCCAATTCCTTCTCCT+AGG | 0.504331 | 8.4:+9118890 | MS.gene57574:CDS |
| AACAAGTTCATTTGTCTCCA+AGG | 0.506581 | 8.4:+9118842 | MS.gene57574:CDS |
| GCAGCATCAAGCTCAGAAAC+CGG | 0.510721 | 8.4:-9116983 | None:intergenic |
| GTCCAAGATATTTAATACAT+TGG | 0.512159 | 8.4:-9117776 | None:intergenic |
| GTACTGATGAGAAATCAAAA+TGG | 0.515735 | 8.4:+9117968 | MS.gene57574:CDS |
| GGATGGTAGTGTCCACTGTA+TGG | 0.524176 | 8.4:-9118390 | None:intergenic |
| GGTTGGTGTATAAACAAGAT+GGG | 0.536691 | 8.4:+9117935 | MS.gene57574:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.537642 | 8.4:+9117705 | MS.gene57574:intron |
| GAAATTGGGTTTCTTGGACT+AGG | 0.538092 | 8.4:-9118961 | None:intergenic |
| AGGTTGGTGTATAAACAAGA+TGG | 0.542312 | 8.4:+9117934 | MS.gene57574:CDS |
| GGTGGTGCAACCACAGCAGC+TGG | 0.542342 | 8.4:+9118072 | MS.gene57574:CDS |
| CACTGCAAGAGCCTTGTATG+TGG | 0.543226 | 8.4:+9118005 | MS.gene57574:CDS |
| AAGTAATTGTTGAAAAGGGA+AGG | 0.544030 | 8.4:+9117914 | MS.gene57574:CDS |
| AACAAAGGTTCCTACTCCTA+AGG | 0.545400 | 8.4:+9118660 | MS.gene57574:CDS |
| CTTTCAAGAATCATGTGTTG+AGG | 0.549804 | 8.4:-9116839 | None:intergenic |
| TTGCAGCATTTAACGCCTCA+AGG | 0.550558 | 8.4:+9118731 | MS.gene57574:CDS |
| TGTAGACCTCACAAATGTAA+AGG | 0.560440 | 8.4:+9118461 | MS.gene57574:CDS |
| ACACTTGCAGTCAAAAGCAT+TGG | 0.561007 | 8.4:+9118819 | MS.gene57574:CDS |
| TATTTACCTTTACATTTGTG+AGG | 0.561561 | 8.4:-9118467 | None:intergenic |
| CTGCAAGAGCCTTGTATGTG+GGG | 0.574800 | 8.4:+9118007 | MS.gene57574:CDS |
| AATCCCATGTACACAAGCCT+AGG | 0.574805 | 8.4:-9118937 | None:intergenic |
| GGTAGATTAGTAGCAAATCA+AGG | 0.575049 | 8.4:+9118093 | MS.gene57574:CDS |
| TTTGGGCTAGGCCTAGGAGA+AGG | 0.580187 | 8.4:-9118901 | None:intergenic |
| AAGAAAGCTTGAATGTTGAA+AGG | 0.583819 | 8.4:-9118046 | None:intergenic |
| GCTTCAGGCAGAGAAATCAC+TGG | 0.585648 | 8.4:-9116938 | None:intergenic |
| TACTAATCTACCAGCTGCTG+TGG | 0.585907 | 8.4:-9118082 | None:intergenic |
| ACTGCAAGAGCCTTGTATGT+GGG | 0.586114 | 8.4:+9118006 | MS.gene57574:CDS |
| CAATGAACCACAACAAACAA+AGG | 0.595908 | 8.4:+9118645 | MS.gene57574:CDS |
| CTGAAACTGCTGTGTCACGT+TGG | 0.601275 | 8.4:+9117155 | MS.gene57574:CDS |
| TTGACATTGACCTTAGGAGT+AGG | 0.608674 | 8.4:-9118670 | None:intergenic |
| TGGTTGTGGAAGAGTTATGG+TGG | 0.610463 | 8.4:+9117071 | MS.gene57574:CDS |
| ATAAGATGAGTACTTCAAGC+AGG | 0.611847 | 8.4:+9116801 | MS.gene57574:CDS |
| CAACCACTGCACAATCTGCA+AGG | 0.620516 | 8.4:-9117054 | None:intergenic |
| CAAGGAGATTGTCTTGCAAG+TGG | 0.635633 | 8.4:+9118749 | MS.gene57574:CDS |
| AGCAAATCAAGGTGTTCTTG+AGG | 0.643990 | 8.4:+9118104 | MS.gene57574:CDS |
| TCACCTAGGCTTGTGTACAT+GGG | 0.646732 | 8.4:+9118934 | MS.gene57574:CDS |
| CAAAAGTTAGAATGTCACCT+AGG | 0.655633 | 8.4:+9118920 | MS.gene57574:CDS |
| TTGTGTCCATATCGATGACG+CGG | 0.659774 | 8.4:-9117504 | None:intergenic |
| CAGGCTATTTGGCCATACAG+TGG | 0.663221 | 8.4:+9118378 | MS.gene57574:intron |
| TCACGAACACAACCAATACG+TGG | 0.684822 | 8.4:-9118787 | None:intergenic |
| CTTGCAAGACAATCTCCTTG+AGG | 0.686603 | 8.4:-9118746 | None:intergenic |
| TGTGTCCATATCGATGACGC+GGG | 0.693829 | 8.4:-9117503 | None:intergenic |
| AAACCTTGCAGATTGTGCAG+TGG | 0.697065 | 8.4:+9117051 | MS.gene57574:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGATAAATAATTTGT+AGG | + | chr8.4:9117688-9117707 | MS.gene57574:intron | 10.0% |
| !! | ATTTATAGAAAGAGTTTAAT+TGG | - | chr8.4:9118309-9118328 | None:intergenic | 15.0% |
| !!! | TACTACTAATAATTATTTTG+AGG | - | chr8.4:9118499-9118518 | None:intergenic | 15.0% |
| !! | AAAGAATTTATAAGCTTTCT+TGG | + | chr8.4:9118429-9118448 | MS.gene57574:CDS | 20.0% |
| !! | AAGATAAACAATTATGAGAT+AGG | - | chr8.4:9117856-9117875 | None:intergenic | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | + | chr8.4:9117909-9117928 | MS.gene57574:CDS | 20.0% |
| !! | ATTTCATTAGTACTTTACAT+AGG | - | chr8.4:9118529-9118548 | None:intergenic | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | + | chr8.4:9117910-9117929 | MS.gene57574:CDS | 20.0% |
| !!! | ACTTTTTATAGTTTTTGATC+TGG | + | chr8.4:9117440-9117459 | MS.gene57574:intron | 20.0% |
| !!! | ATGATAAATAATTTGTAGGT+TGG | + | chr8.4:9117692-9117711 | MS.gene57574:intron | 20.0% |
| !!! | TATTTTCAAAGTTATCTATG+TGG | + | chr8.4:9118251-9118270 | MS.gene57574:intron | 20.0% |
| ! | AAAAATTAGCACTTCAACAT+TGG | + | chr8.4:9117349-9117368 | MS.gene57574:CDS | 25.0% |
| ! | AAATAAAAATGCAGGCTATT+TGG | + | chr8.4:9118367-9118386 | MS.gene57574:intron | 25.0% |
| ! | ATTAAATCCTTATGAAAAGC+TGG | - | chr8.4:9118150-9118169 | None:intergenic | 25.0% |
| ! | CTTTATCTTGAACAAATGAA+TGG | - | chr8.4:9116868-9116887 | None:intergenic | 25.0% |
| ! | GATGATACTTATTCAATTGT+TGG | + | chr8.4:9118601-9118620 | MS.gene57574:CDS | 25.0% |
| ! | GTCCAAGATATTTAATACAT+TGG | - | chr8.4:9117779-9117798 | None:intergenic | 25.0% |
| ! | TATCCACTAAATAAAAATGC+AGG | + | chr8.4:9118359-9118378 | MS.gene57574:intron | 25.0% |
| ! | TATTTACCTTTACATTTGTG+AGG | - | chr8.4:9118470-9118489 | None:intergenic | 25.0% |
| ! | TGAATAAGTATCATCATCTA+TGG | - | chr8.4:9118596-9118615 | None:intergenic | 25.0% |
| ! | TTCACATGTATTATGATATC+TGG | + | chr8.4:9117529-9117548 | MS.gene57574:CDS | 25.0% |
| !! | TATCTACATGATCTCAATTT+TGG | + | chr8.4:9117807-9117826 | MS.gene57574:intron | 25.0% |
| !! | TGAAGTACTCATCTTATTAT+TGG | - | chr8.4:9116798-9116817 | None:intergenic | 25.0% |
| !!! | CTTGTTCATGTTACTTTATA+TGG | + | chr8.4:9117244-9117263 | MS.gene57574:intron | 25.0% |
| !!! | TTTTCAAGACTCAACAAATT+TGG | + | chr8.4:9118871-9118890 | MS.gene57574:CDS | 25.0% |
| AAGAAAGCTTGAATGTTGAA+AGG | - | chr8.4:9118049-9118068 | None:intergenic | 30.0% | |
| AAGTAATTGTTGAAAAGGGA+AGG | + | chr8.4:9117914-9117933 | MS.gene57574:CDS | 30.0% | |
| ACAGATGAAGATTGTAAAAC+AGG | + | chr8.4:9117633-9117652 | MS.gene57574:intron | 30.0% | |
| AGAGTTTACCAGTAGAAAAA+TGG | - | chr8.4:9117576-9117595 | None:intergenic | 30.0% | |
| AGATCATGTAGATAACTTAC+TGG | - | chr8.4:9117801-9117820 | None:intergenic | 30.0% | |
| AGGTTTATCTAAGGATGAAA+AGG | + | chr8.4:9117323-9117342 | MS.gene57574:CDS | 30.0% | |
| CGCCAATGTATTAAATATCT+TGG | + | chr8.4:9117774-9117793 | MS.gene57574:CDS | 30.0% | |
| TGTGACATCAACTCATAAAA+AGG | + | chr8.4:9118702-9118721 | MS.gene57574:CDS | 30.0% | |
| TTATCATTGACATTGACCTT+AGG | - | chr8.4:9118679-9118698 | None:intergenic | 30.0% | |
| TTGTTGAGTCTTGAAAAACT+TGG | - | chr8.4:9118868-9118887 | None:intergenic | 30.0% | |
| ! | ATAATTTGTAGGTTGGATGT+TGG | + | chr8.4:9117699-9117718 | MS.gene57574:intron | 30.0% |
| ! | ATGCTTGAATTGATCACTTT+TGG | - | chr8.4:9116909-9116928 | None:intergenic | 30.0% |
| ! | GTACTGATGAGAAATCAAAA+TGG | + | chr8.4:9117968-9117987 | MS.gene57574:CDS | 30.0% |
| ! | TAGGTGACATTCTAACTTTT+GGG | - | chr8.4:9118921-9118940 | None:intergenic | 30.0% |
| !! | CTGTTACTGATTTGTCAAAT+GGG | + | chr8.4:9116771-9116790 | MS.gene57574:CDS | 30.0% |
| !! | TAGCCTGCATTTTTATTTAG+TGG | - | chr8.4:9118365-9118384 | None:intergenic | 30.0% |
| !! | TCTGTTACTGATTTGTCAAA+TGG | + | chr8.4:9116770-9116789 | MS.gene57574:CDS | 30.0% |
| !!! | AACTCTTTTTTTGCAAAGGT+TGG | + | chr8.4:9117297-9117316 | MS.gene57574:intron | 30.0% |
| !!! | GTGTAACTCTTTTTTTGCAA+AGG | + | chr8.4:9117293-9117312 | MS.gene57574:intron | 30.0% |
| !!! | TTTTTTGCAAAGGTTGGAAA+AGG | + | chr8.4:9117303-9117322 | MS.gene57574:intron | 30.0% |
| AACAAGTTCATTTGTCTCCA+AGG | + | chr8.4:9118842-9118861 | MS.gene57574:CDS | 35.0% | |
| AATTGTTGAAAAGGGAAGGT+TGG | + | chr8.4:9117918-9117937 | MS.gene57574:CDS | 35.0% | |
| ATAAGATGAGTACTTCAAGC+AGG | + | chr8.4:9116801-9116820 | MS.gene57574:CDS | 35.0% | |
| CAAAAGTTAGAATGTCACCT+AGG | + | chr8.4:9118920-9118939 | MS.gene57574:CDS | 35.0% | |
| CAATGAACCACAACAAACAA+AGG | + | chr8.4:9118645-9118664 | MS.gene57574:CDS | 35.0% | |
| CTTTCAAGAATCATGTGTTG+AGG | - | chr8.4:9116842-9116861 | None:intergenic | 35.0% | |
| GAAGAAAAAACAACTGCTTC+AGG | - | chr8.4:9116956-9116975 | None:intergenic | 35.0% | |
| GGTAGATTAGTAGCAAATCA+AGG | + | chr8.4:9118093-9118112 | MS.gene57574:CDS | 35.0% | |
| GGTTGGAAAAGGTTTATCTA+AGG | + | chr8.4:9117314-9117333 | MS.gene57574:intron | 35.0% | |
| TATGTGGGGAAAAAGCAAAA+GGG | + | chr8.4:9118021-9118040 | MS.gene57574:CDS | 35.0% | |
| TGTAGACCTCACAAATGTAA+AGG | + | chr8.4:9118461-9118480 | MS.gene57574:CDS | 35.0% | |
| ! | AGGAGCTAAAGTGTTCTATA+TGG | + | chr8.4:9117653-9117672 | MS.gene57574:intron | 35.0% |
| ! | CTAGGTGACATTCTAACTTT+TGG | - | chr8.4:9118922-9118941 | None:intergenic | 35.0% |
| ! | GGTTGGTGTATAAACAAGAT+GGG | + | chr8.4:9117935-9117954 | MS.gene57574:CDS | 35.0% |
| !! | AGGTTGGTGTATAAACAAGA+TGG | + | chr8.4:9117934-9117953 | MS.gene57574:CDS | 35.0% |
| !! | GTTCACAACCATTTTTCTAC+TGG | + | chr8.4:9117565-9117584 | MS.gene57574:CDS | 35.0% |
| !! | TCTTTGAAGTTCTCTTCTGT+TGG | - | chr8.4:9118414-9118433 | None:intergenic | 35.0% |
| !!! | TGTTTTTTCTTCTCCAAGAC+CGG | + | chr8.4:9116964-9116983 | MS.gene57574:CDS | 35.0% |
| AACAAAGGTTCCTACTCCTA+AGG | + | chr8.4:9118660-9118679 | MS.gene57574:CDS | 40.0% | |
| AGTCTTGAAAAACTTGGCCT+TGG | - | chr8.4:9118862-9118881 | None:intergenic | 40.0% | |
| ATCCTTATGAAAAGCTGGAG+TGG | - | chr8.4:9118145-9118164 | None:intergenic | 40.0% | |
| CAACATTCAAGCTTTCTTGC+TGG | + | chr8.4:9118051-9118070 | MS.gene57574:CDS | 40.0% | |
| CTGCAAGGTTTCTTCTAGTA+CGG | - | chr8.4:9117042-9117061 | None:intergenic | 40.0% | |
| GAAATTGGGTTTCTTGGACT+AGG | - | chr8.4:9118964-9118983 | None:intergenic | 40.0% | |
| GCAGTTGAAATTGGGTTTCT+TGG | - | chr8.4:9118970-9118989 | None:intergenic | 40.0% | |
| GTATGTGGGGAAAAAGCAAA+AGG | + | chr8.4:9118020-9118039 | MS.gene57574:CDS | 40.0% | |
| TGAAAAGCTGGAGTGGAATT+TGG | - | chr8.4:9118138-9118157 | None:intergenic | 40.0% | |
| TGAAGTTCTCTTCTGTTGGA+TGG | - | chr8.4:9118410-9118429 | None:intergenic | 40.0% | |
| TGCTGCAACTACACTTCAAA+AGG | + | chr8.4:9117003-9117022 | MS.gene57574:CDS | 40.0% | |
| TTGACATTGACCTTAGGAGT+AGG | - | chr8.4:9118673-9118692 | None:intergenic | 40.0% | |
| ! | ACACTTGCAGTCAAAAGCAT+TGG | + | chr8.4:9118819-9118838 | MS.gene57574:CDS | 40.0% |
| ! | AGAGTTATGGTGGAAAGCAT+TGG | + | chr8.4:9117081-9117100 | MS.gene57574:CDS | 40.0% |
| ! | AGCAAATCAAGGTGTTCTTG+AGG | + | chr8.4:9118104-9118123 | MS.gene57574:CDS | 40.0% |
| ! | GACATTCTAACTTTTGGGCT+AGG | - | chr8.4:9118916-9118935 | None:intergenic | 40.0% |
| ! | GTAGGAACCTTTGTTTGTTG+TGG | - | chr8.4:9118655-9118674 | None:intergenic | 40.0% |
| ! | TTCCACTCCAGCTTTTCATA+AGG | + | chr8.4:9118140-9118159 | MS.gene57574:intron | 40.0% |
| !!! | TTGCTTTTTCCCCACATACA+AGG | - | chr8.4:9118019-9118038 | None:intergenic | 40.0% |
| AAACCTTGCAGATTGTGCAG+TGG | + | chr8.4:9117051-9117070 | MS.gene57574:CDS | 45.0% | |
| AATCCCATGTACACAAGCCT+AGG | - | chr8.4:9118940-9118959 | None:intergenic | 45.0% | |
| AGCAAGAACAAGAGCAGCTA+AGG | + | chr8.4:9117183-9117202 | MS.gene57574:CDS | 45.0% | |
| CAAGGAGATTGTCTTGCAAG+TGG | + | chr8.4:9118749-9118768 | MS.gene57574:CDS | 45.0% | |
| CAGTGGTTGTGGAAGAGTTA+TGG | + | chr8.4:9117068-9117087 | MS.gene57574:CDS | 45.0% | |
| CATCATCTATGGCACATCTC+TGG | - | chr8.4:9118585-9118604 | None:intergenic | 45.0% | |
| CATTCAAGCTTTCTTGCTGG+TGG | + | chr8.4:9118054-9118073 | MS.gene57574:CDS | 45.0% | |
| CGTTGTAGAACAGTGCTTCT+TGG | - | chr8.4:9117756-9117775 | None:intergenic | 45.0% | |
| CTTGCAAGACAATCTCCTTG+AGG | - | chr8.4:9118749-9118768 | None:intergenic | 45.0% | |
| TACTAATCTACCAGCTGCTG+TGG | - | chr8.4:9118085-9118104 | None:intergenic | 45.0% | |
| TCACCTAGGCTTGTGTACAT+GGG | + | chr8.4:9118934-9118953 | MS.gene57574:CDS | 45.0% | |
| TCACGAACACAACCAATACG+TGG | - | chr8.4:9118790-9118809 | None:intergenic | 45.0% | |
| TGAAACTGCTGTGTCACGTT+GGG | + | chr8.4:9117156-9117175 | MS.gene57574:CDS | 45.0% | |
| TGGTTGTGGAAGAGTTATGG+TGG | + | chr8.4:9117071-9117090 | MS.gene57574:CDS | 45.0% | |
| TTGCAGCATTTAACGCCTCA+AGG | + | chr8.4:9118731-9118750 | MS.gene57574:CDS | 45.0% | |
| TTGGTCCAATTCCTTCTCCT+AGG | + | chr8.4:9118890-9118909 | MS.gene57574:CDS | 45.0% | |
| TTGTCTTGCAAGTGGTCAAC+TGG | + | chr8.4:9118757-9118776 | MS.gene57574:CDS | 45.0% | |
| TTGTGTCCATATCGATGACG+CGG | - | chr8.4:9117507-9117526 | None:intergenic | 45.0% | |
| ! | ACTGCAAGAGCCTTGTATGT+GGG | + | chr8.4:9118006-9118025 | MS.gene57574:CDS | 45.0% |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | + | chr8.4:9117705-9117724 | MS.gene57574:intron | 45.0% |
| !! | GCTTTTGACTGCAAGTGTTC+AGG | - | chr8.4:9118817-9118836 | None:intergenic | 45.0% |
| ATTGACCCGCGTCATCGATA+TGG | + | chr8.4:9117498-9117517 | MS.gene57574:CDS | 50.0% | |
| CAACCACTGCACAATCTGCA+AGG | - | chr8.4:9117057-9117076 | None:intergenic | 50.0% | |
| CAACGTGACACAGCAGTTTC+AGG | - | chr8.4:9117157-9117176 | None:intergenic | 50.0% | |
| CAGGCTATTTGGCCATACAG+TGG | + | chr8.4:9118378-9118397 | MS.gene57574:intron | 50.0% | |
| CTAGGCCTAGGAGAAGGAAT+TGG | - | chr8.4:9118898-9118917 | None:intergenic | 50.0% | |
| CTGAAACTGCTGTGTCACGT+TGG | + | chr8.4:9117155-9117174 | MS.gene57574:CDS | 50.0% | |
| GCAGCATCAAGCTCAGAAAC+CGG | - | chr8.4:9116986-9117005 | None:intergenic | 50.0% | |
| GCTTCAGGCAGAGAAATCAC+TGG | - | chr8.4:9116941-9116960 | None:intergenic | 50.0% | |
| GGCAGAGAAATCACTGGAAC+TGG | - | chr8.4:9116935-9116954 | None:intergenic | 50.0% | |
| GTCACCTAGGCTTGTGTACA+TGG | + | chr8.4:9118933-9118952 | MS.gene57574:CDS | 50.0% | |
| TCAAGCTCAGAAACCGGTCT+TGG | - | chr8.4:9116980-9116999 | None:intergenic | 50.0% | |
| TGCAGATTGTGCAGTGGTTG+TGG | + | chr8.4:9117057-9117076 | MS.gene57574:CDS | 50.0% | |
| TGTGTCCATATCGATGACGC+GGG | - | chr8.4:9117506-9117525 | None:intergenic | 50.0% | |
| ! | CACTGCAAGAGCCTTGTATG+TGG | + | chr8.4:9118005-9118024 | MS.gene57574:CDS | 50.0% |
| ! | CTGCAAGAGCCTTGTATGTG+GGG | + | chr8.4:9118007-9118026 | MS.gene57574:CDS | 50.0% |
| ! | GGATGGTAGTGTCCACTGTA+TGG | - | chr8.4:9118393-9118412 | None:intergenic | 50.0% |
| !! | CTAACTTTTGGGCTAGGCCT+AGG | - | chr8.4:9118910-9118929 | None:intergenic | 50.0% |
| ACTGGAGCTGGTCCACGTAT+TGG | + | chr8.4:9118775-9118794 | MS.gene57574:CDS | 55.0% | |
| TGCAAGTGGTCAACTGGAGC+TGG | + | chr8.4:9118763-9118782 | MS.gene57574:CDS | 55.0% | |
| ! | TTTGGGCTAGGCCTAGGAGA+AGG | - | chr8.4:9118904-9118923 | None:intergenic | 55.0% |
| GGTGGTGCAACCACAGCAGC+TGG | + | chr8.4:9118072-9118091 | MS.gene57574:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9116761 | 9118996 | 9116761 | ID=MS.gene57574 |
| chr8.4 | mRNA | 9116761 | 9118996 | 9116761 | ID=MS.gene57574.t1;Parent=MS.gene57574 |
| chr8.4 | exon | 9116761 | 9117204 | 9116761 | ID=MS.gene57574.t1.exon1;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9116761 | 9117204 | 9116761 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9117315 | 9117380 | 9117315 | ID=MS.gene57574.t1.exon2;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9117315 | 9117380 | 9117315 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9117498 | 9117586 | 9117498 | ID=MS.gene57574.t1.exon3;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9117498 | 9117586 | 9117498 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9117710 | 9117800 | 9117710 | ID=MS.gene57574.t1.exon4;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9117710 | 9117800 | 9117710 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9117895 | 9118125 | 9117895 | ID=MS.gene57574.t1.exon5;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9117895 | 9118125 | 9117895 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9118381 | 9118482 | 9118381 | ID=MS.gene57574.t1.exon6;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9118381 | 9118482 | 9118381 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| chr8.4 | exon | 9118586 | 9118996 | 9118586 | ID=MS.gene57574.t1.exon7;Parent=MS.gene57574.t1 |
| chr8.4 | CDS | 9118586 | 9118996 | 9118586 | ID=cds.MS.gene57574.t1;Parent=MS.gene57574.t1 |
| Gene Sequence |
| Protein sequence |
