AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85613


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85613.t1 MTR_2g039910 98.228 508 9 0 1 508 1 508 0.0 1038
MS.gene85613.t1 MTR_4g126020 75.053 469 87 5 54 507 17 470 0.0 677
MS.gene85613.t1 MTR_8g017580 62.818 433 145 3 74 506 84 500 0.0 564
MS.gene85613.t1 MTR_4g126020 81.173 324 46 2 54 362 17 340 0.0 528
MS.gene85613.t1 MTR_2g099790 54.048 420 156 6 86 499 76 464 4.12e-152 442
MS.gene85613.t1 MTR_2g099790 53.162 427 156 7 86 499 76 471 3.15e-149 435
MS.gene85613.t1 MTR_8g085900 67.626 278 82 2 94 368 126 398 3.90e-140 419
MS.gene85613.t1 MTR_8g085900 59.016 61 24 1 416 476 544 603 3.35e-14 75.9
MS.gene85613.t1 MTR_3g083570 67.286 269 85 1 107 372 5 273 8.00e-137 397
MS.gene85613.t1 MTR_8g017580 71.923 260 72 1 74 333 84 342 4.41e-136 398
MS.gene85613.t1 MTR_3g083570 69.112 259 77 1 107 362 5 263 9.83e-136 393
MS.gene85613.t1 MTR_2g099790 63.830 282 97 2 86 362 76 357 1.64e-131 389
MS.gene85613.t1 MTR_1g054735 66.788 274 91 0 96 369 66 339 3.08e-131 393
MS.gene85613.t1 MTR_1g054735 36.232 138 60 4 366 501 452 563 8.32e-14 74.3
MS.gene85613.t1 MTR_1g060590 47.380 439 189 8 87 486 46 481 2.41e-124 373
MS.gene85613.t1 MTR_3g083570 67.257 226 71 1 107 329 5 230 2.56e-112 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85613.t1 AT4G33050 63.011 465 145 5 41 503 117 556 0.0 575
MS.gene85613.t1 AT4G33050 63.011 465 145 5 41 503 45 484 0.0 575
MS.gene85613.t1 AT4G33050 58.250 503 145 6 41 503 45 522 0.0 557
MS.gene85613.t1 AT2G26190 56.673 547 179 8 1 506 1 530 0.0 544
MS.gene85613.t1 AT2G26190 56.673 547 179 8 1 506 1 530 0.0 544
MS.gene85613.t1 AT5G57010 63.571 420 114 3 84 503 114 494 0.0 538
MS.gene85613.t1 AT2G26190 60.553 398 120 5 1 362 1 397 4.68e-155 448
MS.gene85613.t1 AT3G13600 62.342 316 101 4 104 401 108 423 1.10e-139 416
MS.gene85613.t1 AT3G13600 50.562 89 40 2 416 504 517 601 1.61e-17 86.3
MS.gene85613.t1 AT3G13600 62.342 316 101 4 104 401 108 423 1.10e-139 416
MS.gene85613.t1 AT3G13600 50.562 89 40 2 416 504 517 601 1.61e-17 86.3
MS.gene85613.t1 AT4G33050 67.123 292 93 2 41 330 45 335 2.57e-134 392
MS.gene85613.t1 AT3G58480 59.502 321 125 2 104 419 98 418 1.76e-133 399
MS.gene85613.t1 AT3G58480 56.250 48 21 0 423 470 498 545 4.10e-11 65.9
MS.gene85613.t1 AT3G52870 49.250 400 171 6 104 472 49 447 1.82e-131 389
MS.gene85613.t1 AT4G33050 59.394 330 93 3 41 330 45 373 1.34e-126 374
MS.gene85613.t1 AT4G33050 68.075 213 65 2 41 251 45 256 3.60e-95 289

Find 123 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTTATATTATGATATT+TGG 0.113028 2.1:+48549198 MS.gene85613:CDS
TATAAACTTTGCAGGCTATT+TGG 0.196615 2.1:+48550115 MS.gene85613:intron
TCCTTTGTTGCTCACATTAT+TGG 0.207208 2.1:-48550435 None:intergenic
GATTCATTAGTTTCAATAAA+TGG 0.225018 2.1:-48550368 None:intergenic
CAAACAGCAATTGGGGTTCT+TGG 0.242705 2.1:-48550740 None:intergenic
CAAAATCATAGCACCATCTT+TGG 0.243712 2.1:-48548119 None:intergenic
CAACACTCTAGCTTTCTATC+TGG 0.277196 2.1:+48549792 MS.gene85613:CDS
ATTGTTAGGCATTCACTCTT+TGG 0.277775 2.1:+48548070 MS.gene85613:CDS
TGCTGGGACCTCAAATTTCT+TGG 0.285980 2.1:-48550489 None:intergenic
TAGGAGAAATCCTAACTTTA+GGG 0.286465 2.1:-48550691 None:intergenic
CTTACATTCAACTATAGTTT+TGG 0.302288 2.1:+48548094 MS.gene85613:CDS
TTGGCCTTGGAGAAGGTATT+GGG 0.317413 2.1:-48550667 None:intergenic
GCCCTTGATTGAAGATGTTC+AGG 0.324654 2.1:-48550587 None:intergenic
GAAGAGAAAACAACTTCTTT+AGG 0.325682 2.1:-48548286 None:intergenic
CTAGGAGAAATCCTAACTTT+AGG 0.328618 2.1:-48550692 None:intergenic
CTTGGCCTTGGAGAAGGTAT+TGG 0.342306 2.1:-48550668 None:intergenic
TACTTGCCTCAAACAGCAAT+TGG 0.345712 2.1:-48550749 None:intergenic
GTGTCAAGGGTAACATGTTC+TGG 0.349098 2.1:-48548214 None:intergenic
CGCCAGTGCATTAAATATCT+TGG 0.351341 2.1:+48549432 MS.gene85613:CDS
CTGTTGTTGTTGAGGAACTA+TGG 0.353192 2.1:+48548401 MS.gene85613:CDS
TTCTCCTAGGCTTGCATACA+TGG 0.355525 2.1:+48550706 MS.gene85613:CDS
GATGATGCACCTTCATTCAT+TGG 0.357552 2.1:+48550338 MS.gene85613:CDS
CTCTGAAGTTCTCTTCAGTT+GGG 0.374129 2.1:-48550158 None:intergenic
GGGGCAGCAACCACAGCTGC+TGG 0.388269 2.1:+48549813 MS.gene85613:CDS
AGACTGATGAAAAGTCTAAA+TGG 0.396024 2.1:+48549709 MS.gene85613:CDS
GGTATTGGGCCATAGCTATA+TGG 0.404459 2.1:-48550653 None:intergenic
TTCTTTACTATCATCAGCTT+GGG 0.405123 2.1:+48548042 MS.gene85613:CDS
GGGTGATAATGACCACTATA+AGG 0.406891 2.1:-48550138 None:intergenic
ATATGAAGTAATTGTTGAAA+AGG 0.407093 2.1:+48549650 MS.gene85613:CDS
ACTTGCCTCAAACAGCAATT+GGG 0.408107 2.1:-48550748 None:intergenic
AACACTCTAGCTTTCTATCT+GGG 0.410297 2.1:+48549793 MS.gene85613:CDS
AAACAGCAATTGGGGTTCTT+GGG 0.411345 2.1:-48550739 None:intergenic
CAGCTTGGGAAGAAATTGTT+AGG 0.416385 2.1:+48548056 MS.gene85613:CDS
CAAGGCCAAGCCCTAAAGTT+AGG 0.416656 2.1:+48550681 MS.gene85613:CDS
CAGGAGCTGGACCTCGTATT+GGG 0.418667 2.1:+48550549 MS.gene85613:CDS
ATTTAATGCACTGGCGTTGA+AGG 0.425705 2.1:-48549425 None:intergenic
ACAGGAGCTGGACCTCGTAT+TGG 0.428286 2.1:+48550548 MS.gene85613:CDS
GAAATCCTAACTTTAGGGCT+TGG 0.428504 2.1:-48550686 None:intergenic
CTAACTTTAGGGCTTGGCCT+TGG 0.434652 2.1:-48550680 None:intergenic
ATTGACCCACGTCATCGTTA+TGG 0.436296 2.1:+48549167 MS.gene85613:CDS
CTCTTGGAAAAGTCAAATGC+TGG 0.442683 2.1:-48550506 None:intergenic
AATTGTTGAAAAGGGAAAGT+TGG 0.444544 2.1:+48549659 MS.gene85613:CDS
TGTTATAATTGCAGAAAGAA+AGG 0.444730 2.1:+48549622 MS.gene85613:intron
TCTCTGAAGTTCTCTTCAGT+TGG 0.451697 2.1:-48550159 None:intergenic
CCACTTGCATGATAATCTCT+TGG 0.452364 2.1:-48550522 None:intergenic
ATTAGTTTCAATAAATGGAT+TGG 0.452855 2.1:-48550363 None:intergenic
TATGAAGTAATTGTTGAAAA+GGG 0.453381 2.1:+48549651 MS.gene85613:CDS
GCTTGATGCTGCAGCAACTA+AGG 0.459781 2.1:+48548327 MS.gene85613:CDS
GTATGTTGGAAGGAAACAAA+AGG 0.459878 2.1:+48549761 MS.gene85613:CDS
TTTCTTTACTATCATCAGCT+TGG 0.460682 2.1:+48548041 MS.gene85613:CDS
GGCAAGGACAAGAGCAGCTA+AGG 0.461504 2.1:+48548860 MS.gene85613:CDS
TTATCATGCAAGTGGTCTAC+AGG 0.465259 2.1:+48550530 MS.gene85613:CDS
ATGATGCACCTTCATTCATT+GGG 0.470656 2.1:+48550339 MS.gene85613:CDS
TTCATCAACATTTGTGTCAA+GGG 0.476869 2.1:-48548227 None:intergenic
TCTCCTAGGCTTGCATACAT+GGG 0.479470 2.1:+48550707 MS.gene85613:CDS
GCAATTGGGGTTCTTGGGCT+AGG 0.483909 2.1:-48550734 None:intergenic
AGAACCCCAATTGCTGTTTG+AGG 0.487231 2.1:+48550743 MS.gene85613:CDS
GTCCAAGATATTTAATGCAC+TGG 0.489596 2.1:-48549434 None:intergenic
AAGTTGGTGTATAGAAAAGA+TGG 0.490138 2.1:+48549675 MS.gene85613:CDS
ATCCTGAACATCTTCAATCA+AGG 0.491258 2.1:+48550585 MS.gene85613:CDS
TGCAAGTGGTCTACAGGAGC+TGG 0.491741 2.1:+48550536 MS.gene85613:CDS
CTGCAGTGTCAAGGTGGGGA+AGG 0.491928 2.1:+48548838 MS.gene85613:CDS
CAGCTTCAAGCCAATGTTGG+AGG 0.493190 2.1:-48549034 None:intergenic
TAGAAAAGATGGGAAGTTTG+TGG 0.502062 2.1:+48549686 MS.gene85613:CDS
CACTAATCTTCCAGCAGCTG+TGG 0.502889 2.1:-48549823 None:intergenic
CTAAAGTTAGGATTTCTCCT+AGG 0.503091 2.1:+48550693 MS.gene85613:CDS
CACAGCTGCTGGAAGATTAG+TGG 0.503574 2.1:+48549824 MS.gene85613:CDS
GTTATAATTGCAGAAAGAAA+GGG 0.503902 2.1:+48549623 MS.gene85613:intron
CAGGCTATTTGGCCTTATAG+TGG 0.505306 2.1:+48550126 MS.gene85613:intron
TTAGGGCTTGGCCTTGGAGA+AGG 0.507353 2.1:-48550674 None:intergenic
ATTGATTGAGAAGTTTGAGT+AGG 0.509429 2.1:-48550407 None:intergenic
TTTCATCAACATTTGTGTCA+AGG 0.510168 2.1:-48548228 None:intergenic
GGTCTTGCAGAAGCAGGTCT+AGG 0.511439 2.1:-48550632 None:intergenic
ACCACTAGGGCTTTGTATGT+TGG 0.515347 2.1:+48549747 MS.gene85613:CDS
TGGCGTTGAAGGGTAGCCCT+TGG 0.518338 2.1:-48549414 None:intergenic
TGATGAAAACTTGAAACATA+AGG 0.518550 2.1:+48548243 MS.gene85613:CDS
CTATATGGTCTTGCAGAAGC+AGG 0.519094 2.1:-48550638 None:intergenic
GGTTAATGCCAAGAAATTTG+AGG 0.520668 2.1:+48550481 MS.gene85613:CDS
ACCAATAATGTGAGCAACAA+AGG 0.523579 2.1:+48550434 MS.gene85613:CDS
ACATCTTCAATCAAGGGCAT+TGG 0.526183 2.1:+48550592 MS.gene85613:CDS
AGAATTTGTTAGCTTTCTTG+AGG 0.528950 2.1:+48550179 MS.gene85613:CDS
TTGATTGAGAAGTTTGAGTA+GGG 0.533972 2.1:-48550406 None:intergenic
TTACAGCTTCAAGCCAATGT+TGG 0.537705 2.1:-48549037 None:intergenic
TGATTGTGCTGTTGTTGTTG+AGG 0.543569 2.1:+48548393 MS.gene85613:CDS
CCAAGAGATTATCATGCAAG+TGG 0.547249 2.1:+48550522 MS.gene85613:CDS
TGTAGGTTGGATGTTGGAGA+TGG 0.548321 2.1:+48549366 MS.gene85613:intron
TATTTGTTCTTAGCACCACT+AGG 0.553975 2.1:+48549733 MS.gene85613:CDS
CTTGCCTCAAACAGCAATTG+GGG 0.561115 2.1:-48550747 None:intergenic
AGCTTCAAGCCAATGTTGGA+GGG 0.566073 2.1:-48549033 None:intergenic
TGTCAAGGTGGGGAAGGGCA+AGG 0.566651 2.1:+48548844 MS.gene85613:CDS
CTAGGGCTTTGTATGTTGGA+AGG 0.566948 2.1:+48549751 MS.gene85613:CDS
GATATGAAGGTGGAAAGCAT+TGG 0.567332 2.1:+48548758 MS.gene85613:intron
TGCAGTGTCAAGGTGGGGAA+GGG 0.568513 2.1:+48548839 MS.gene85613:CDS
AGAAACTGCAGTGTCAAGGT+GGG 0.571406 2.1:+48548833 MS.gene85613:CDS
TCTTGGAAAAGTCAAATGCT+GGG 0.575381 2.1:-48550505 None:intergenic
TCCTGAACATCTTCAATCAA+GGG 0.582807 2.1:+48550586 MS.gene85613:CDS
AGTTGGTGTATAGAAAAGAT+GGG 0.583418 2.1:+48549676 MS.gene85613:CDS
TATGTTGGAAGGAAACAAAA+GGG 0.583609 2.1:+48549762 MS.gene85613:CDS
TCTGCAAGACCATATAGCTA+TGG 0.585307 2.1:+48550644 MS.gene85613:CDS
TTTAATGCACTGGCGTTGAA+GGG 0.586946 2.1:-48549424 None:intergenic
AACAAGAAACTGCAGTGTCA+AGG 0.588506 2.1:+48548829 MS.gene85613:CDS
ATTTGTTCTTAGCACCACTA+GGG 0.589990 2.1:+48549734 MS.gene85613:CDS
CAAAATTAATAATGCAACAG+AGG 0.596595 2.1:+48550460 MS.gene85613:CDS
TTAATCTTGAGAAATGTCCA+AGG 0.602258 2.1:+48549397 MS.gene85613:CDS
CTCCTAGGCTTGCATACATG+GGG 0.604327 2.1:+48550708 MS.gene85613:CDS
AGGTTTGTCCAAGGATGACA+AGG 0.605249 2.1:+48548998 MS.gene85613:CDS
AAGAAACTGCAGTGTCAAGG+TGG 0.608522 2.1:+48548832 MS.gene85613:CDS
AGTAGACCTCTCTAATGTCA+AGG 0.615998 2.1:+48550209 MS.gene85613:CDS
GGTTGGAAAAGGTTTGTCCA+AGG 0.616819 2.1:+48548989 MS.gene85613:intron
TTGTGTCCATAACGATGACG+TGG 0.625718 2.1:-48549173 None:intergenic
ACACTCTAGCTTTCTATCTG+GGG 0.628826 2.1:+48549794 MS.gene85613:CDS
GGATTGGTCCCAATGAATGA+AGG 0.630179 2.1:-48550347 None:intergenic
TCTTTAGGCAAAGAAAGCAA+AGG 0.635023 2.1:-48548271 None:intergenic
AGCCCCATGTATGCAAGCCT+AGG 0.635290 2.1:-48550710 None:intergenic
AATTCACCTTGACATTAGAG+AGG 0.638506 2.1:-48550215 None:intergenic
GAAACTGCAGTGTCAAGGTG+GGG 0.643986 2.1:+48548834 MS.gene85613:CDS
GGAAGATTAGTGGCACAACA+AGG 0.648672 2.1:+48549834 MS.gene85613:CDS
ATGGCCCAATACCTTCTCCA+AGG 0.649248 2.1:+48550663 MS.gene85613:CDS
TAATCTTGAGAAATGTCCAA+GGG 0.660398 2.1:+48549398 MS.gene85613:CDS
TCCAACATACAAAGCCCTAG+TGG 0.663510 2.1:-48549748 None:intergenic
GGCACAACAAGGTGTACTCG+AGG 0.687576 2.1:+48549845 MS.gene85613:CDS
TCACGCACACACCCAATACG+AGG 0.694431 2.1:-48550560 None:intergenic
TGTGTCCATAACGATGACGT+GGG 0.727054 2.1:-48549172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAATTGAATTTCAGA+TGG - chr2.1:48548892-48548911 None:intergenic 15.0%
!! ATAATAAGACATATATGATT+AGG - chr2.1:48549280-48549299 None:intergenic 15.0%
!! ATTAGATTATATACTATGAT+CGG - chr2.1:48549590-48549609 None:intergenic 15.0%
!! TATAATTTAAGAGAGTAAAT+TGG + chr2.1:48548670-48548689 MS.gene85613:intron 15.0%
!!! CTAATTTTTATTTTTCATAC+AGG + chr2.1:48548968-48548987 MS.gene85613:intron 15.0%
!!! GTTTTTTGTATGTTATTAAA+TGG + chr2.1:48548722-48548741 MS.gene85613:intron 15.0%
!!! TATACGAATTTTGATAATTT+TGG + chr2.1:48548500-48548519 MS.gene85613:intron 15.0%
!! AGTGATCAAAAAAAGTAAAT+TGG + chr2.1:48550255-48550274 MS.gene85613:intron 20.0%
!! ATATGAAGTAATTGTTGAAA+AGG + chr2.1:48549650-48549669 MS.gene85613:CDS 20.0%
!! ATTCAGGTCAATTAAAAAAA+TGG - chr2.1:48549884-48549903 None:intergenic 20.0%
!! TATGAAGTAATTGTTGAAAA+GGG + chr2.1:48549651-48549670 MS.gene85613:CDS 20.0%
!! TATGAATATTATAAACCCTA+CGG - chr2.1:48549537-48549556 None:intergenic 20.0%
!! TGCACTTATATTATGATATT+TGG + chr2.1:48549198-48549217 MS.gene85613:CDS 20.0%
!! TGTAATATAATGAAAACACA+TGG - chr2.1:48550044-48550063 None:intergenic 20.0%
!! TTAGATTATATACTATGATC+GGG - chr2.1:48549589-48549608 None:intergenic 20.0%
!! TTTGTATGTTATTAAATGGA+TGG + chr2.1:48548726-48548745 MS.gene85613:intron 20.0%
!!! ATATTCTATTGATAACTTAC+TGG - chr2.1:48549459-48549478 None:intergenic 20.0%
!!! ATGGTTTTTAAATGATATGA+AGG + chr2.1:48548745-48548764 MS.gene85613:intron 20.0%
!!! ATTAGTTTCAATAAATGGAT+TGG - chr2.1:48550366-48550385 None:intergenic 20.0%
!!! GATTCATTAGTTTCAATAAA+TGG - chr2.1:48550371-48550390 None:intergenic 20.0%
!!! TTTTTATTTTTCATACAGGT+TGG + chr2.1:48548972-48548991 MS.gene85613:intron 20.0%
! AAAGCTTACCAATAGAAAAA+TGG - chr2.1:48549245-48549264 None:intergenic 25.0%
! ATTGAATCTGATAATCTTGA+TGG + chr2.1:48549334-48549353 MS.gene85613:intron 25.0%
! CAAAATTAATAATGCAACAG+AGG + chr2.1:48550460-48550479 MS.gene85613:CDS 25.0%
! GTTATAATTGCAGAAAGAAA+GGG + chr2.1:48549623-48549642 MS.gene85613:intron 25.0%
! GTTTATTGTATAAACTTTGC+AGG + chr2.1:48550107-48550126 MS.gene85613:intron 25.0%
! TGATGAAAACTTGAAACATA+AGG + chr2.1:48548243-48548262 MS.gene85613:CDS 25.0%
! TGTTATAATTGCAGAAAGAA+AGG + chr2.1:48549622-48549641 MS.gene85613:intron 25.0%
!! ATTGGTAAGCTTTTATTCTA+TGG + chr2.1:48549252-48549271 MS.gene85613:intron 25.0%
!! ATTTTCTATCACAAGTTTTC+CGG - chr2.1:48548605-48548624 None:intergenic 25.0%
!! CTTACATTCAACTATAGTTT+TGG + chr2.1:48548094-48548113 MS.gene85613:CDS 25.0%
!! GTTTTTAAATGATATGAAGG+TGG + chr2.1:48548748-48548767 MS.gene85613:intron 25.0%
!! TTTAGTCTTTAATATTGTCC+CGG + chr2.1:48548583-48548602 MS.gene85613:intron 25.0%
!! TTTGAAGTATATATCGAACT+CGG + chr2.1:48549509-48549528 MS.gene85613:intron 25.0%
AAAAAGTTCAACTAGGTTAG+AGG + chr2.1:48548183-48548202 MS.gene85613:CDS 30.0%
AAGTTGAAAATCTTAACCGT+TGG + chr2.1:48549910-48549929 MS.gene85613:intron 30.0%
AATTGTTGAAAAGGGAAAGT+TGG + chr2.1:48549659-48549678 MS.gene85613:CDS 30.0%
AGAAAAATGGTTGAGTACTT+TGG - chr2.1:48549232-48549251 None:intergenic 30.0%
AGACTGATGAAAAGTCTAAA+TGG + chr2.1:48549709-48549728 MS.gene85613:CDS 30.0%
ATTGATTGAGAAGTTTGAGT+AGG - chr2.1:48550410-48550429 None:intergenic 30.0%
CAACAACAAAAAGTTCAACT+AGG + chr2.1:48548176-48548195 MS.gene85613:CDS 30.0%
GAAGAGAAAACAACTTCTTT+AGG - chr2.1:48548289-48548308 None:intergenic 30.0%
TAATCTTGAGAAATGTCCAA+GGG + chr2.1:48549398-48549417 MS.gene85613:CDS 30.0%
TAGGAGAAATCCTAACTTTA+GGG - chr2.1:48550694-48550713 None:intergenic 30.0%
TATAAACTTTGCAGGCTATT+TGG + chr2.1:48550115-48550134 MS.gene85613:intron 30.0%
TATGTTGGAAGGAAACAAAA+GGG + chr2.1:48549762-48549781 MS.gene85613:CDS 30.0%
TTAATCTTGAGAAATGTCCA+AGG + chr2.1:48549397-48549416 MS.gene85613:CDS 30.0%
TTCATCAACATTTGTGTCAA+GGG - chr2.1:48548230-48548249 None:intergenic 30.0%
TTCTTTACTATCATCAGCTT+GGG + chr2.1:48548042-48548061 MS.gene85613:CDS 30.0%
TTGATTGAGAAGTTTGAGTA+GGG - chr2.1:48550409-48550428 None:intergenic 30.0%
TTTCATCAACATTTGTGTCA+AGG - chr2.1:48548231-48548250 None:intergenic 30.0%
TTTCTTTACTATCATCAGCT+TGG + chr2.1:48548041-48548060 MS.gene85613:CDS 30.0%
! AGTTGGTGTATAGAAAAGAT+GGG + chr2.1:48549676-48549695 MS.gene85613:CDS 30.0%
! ATAGCATATCTCTGAAAAGA+GGG - chr2.1:48550314-48550333 None:intergenic 30.0%
! ATGGTTAACTTTTTGTAGGT+TGG + chr2.1:48549353-48549372 MS.gene85613:intron 30.0%
! TATAGCATATCTCTGAAAAG+AGG - chr2.1:48550315-48550334 None:intergenic 30.0%
! TTTTCAACTTCAACGAATTC+AGG - chr2.1:48549900-48549919 None:intergenic 30.0%
! TTTTCTATCACAAGTTTTCC+GGG - chr2.1:48548604-48548623 None:intergenic 30.0%
!! AAGTTGGTGTATAGAAAAGA+TGG + chr2.1:48549675-48549694 MS.gene85613:CDS 30.0%
!! AGAATTTGTTAGCTTTCTTG+AGG + chr2.1:48550179-48550198 MS.gene85613:CDS 30.0%
!! CTAGTTGAACTTTTTGTTGT+TGG - chr2.1:48548178-48548197 None:intergenic 30.0%
!! CTTGATGGTTAACTTTTTGT+AGG + chr2.1:48549349-48549368 MS.gene85613:intron 30.0%
!! GTACTCAACCATTTTTCTAT+TGG + chr2.1:48549234-48549253 MS.gene85613:CDS 30.0%
!! TTTTTCATACAGGTTGGAAA+AGG + chr2.1:48548978-48548997 MS.gene85613:intron 30.0%
!!! TATAGTTTTGGTTCCAAAGA+TGG + chr2.1:48548106-48548125 MS.gene85613:CDS 30.0%
AAAAATTAGCCCTCCAACAT+TGG + chr2.1:48549024-48549043 MS.gene85613:CDS 35.0%
AATTCACCTTGACATTAGAG+AGG - chr2.1:48550218-48550237 None:intergenic 35.0%
ACCAATAATGTGAGCAACAA+AGG + chr2.1:48550434-48550453 MS.gene85613:CDS 35.0%
ATCCTGAACATCTTCAATCA+AGG + chr2.1:48550585-48550604 MS.gene85613:CDS 35.0%
ATGATGCACCTTCATTCATT+GGG + chr2.1:48550339-48550358 MS.gene85613:CDS 35.0%
ATTGTTAGGCATTCACTCTT+TGG + chr2.1:48548070-48548089 MS.gene85613:CDS 35.0%
ATTTGTTCTTAGCACCACTA+GGG + chr2.1:48549734-48549753 MS.gene85613:CDS 35.0%
CAAAATCATAGCACCATCTT+TGG - chr2.1:48548122-48548141 None:intergenic 35.0%
CTAAAGTTAGGATTTCTCCT+AGG + chr2.1:48550693-48550712 MS.gene85613:CDS 35.0%
CTAGGAGAAATCCTAACTTT+AGG - chr2.1:48550695-48550714 None:intergenic 35.0%
GGTTAATGCCAAGAAATTTG+AGG + chr2.1:48550481-48550500 MS.gene85613:CDS 35.0%
GTATGTTGGAAGGAAACAAA+AGG + chr2.1:48549761-48549780 MS.gene85613:CDS 35.0%
GTCCAAGATATTTAATGCAC+TGG - chr2.1:48549437-48549456 None:intergenic 35.0%
TAGAAAAGATGGGAAGTTTG+TGG + chr2.1:48549686-48549705 MS.gene85613:CDS 35.0%
TATTTGTTCTTAGCACCACT+AGG + chr2.1:48549733-48549752 MS.gene85613:CDS 35.0%
TCCTGAACATCTTCAATCAA+GGG + chr2.1:48550586-48550605 MS.gene85613:CDS 35.0%
TCCTTTGTTGCTCACATTAT+TGG - chr2.1:48550438-48550457 None:intergenic 35.0%
TCTTGGAAAAGTCAAATGCT+GGG - chr2.1:48550508-48550527 None:intergenic 35.0%
TCTTTAGGCAAAGAAAGCAA+AGG - chr2.1:48548274-48548293 None:intergenic 35.0%
! TCAAGCTCAAAAACAGGTTT+TGG - chr2.1:48548313-48548332 None:intergenic 35.0%
!! AACACTCTAGCTTTCTATCT+GGG + chr2.1:48549793-48549812 MS.gene85613:CDS 35.0%
!! ACTTTTTGTAGGTTGGATGT+TGG + chr2.1:48549360-48549379 MS.gene85613:intron 35.0%
AAACAGCAATTGGGGTTCTT+GGG - chr2.1:48550742-48550761 None:intergenic 40.0%
AACAAGAAACTGCAGTGTCA+AGG + chr2.1:48548829-48548848 MS.gene85613:CDS 40.0%
AGTAGACCTCTCTAATGTCA+AGG + chr2.1:48550209-48550228 MS.gene85613:CDS 40.0%
ATCATCTGATCGTCATCCAA+CGG - chr2.1:48549929-48549948 None:intergenic 40.0%
ATTGTCCGACCTTTATCTGA+CGG + chr2.1:48550000-48550019 MS.gene85613:intron 40.0%
CAGCTTGGGAAGAAATTGTT+AGG + chr2.1:48548056-48548075 MS.gene85613:CDS 40.0%
CCAAGAGATTATCATGCAAG+TGG + chr2.1:48550522-48550541 MS.gene85613:CDS 40.0%
CCACTTGCATGATAATCTCT+TGG - chr2.1:48550525-48550544 None:intergenic 40.0%
CGCCAGTGCATTAAATATCT+TGG + chr2.1:48549432-48549451 MS.gene85613:CDS 40.0%
CTCTTGGAAAAGTCAAATGC+TGG - chr2.1:48550509-48550528 None:intergenic 40.0%
GAATCTTGACCGTCAGATAA+AGG - chr2.1:48550012-48550031 None:intergenic 40.0%
GATGATGCACCTTCATTCAT+TGG + chr2.1:48550338-48550357 MS.gene85613:CDS 40.0%
TCTGCAAGACCATATAGCTA+TGG + chr2.1:48550644-48550663 MS.gene85613:CDS 40.0%
TTACAGCTTCAAGCCAATGT+TGG - chr2.1:48549040-48549059 None:intergenic 40.0%
TTATCATGCAAGTGGTCTAC+AGG + chr2.1:48550530-48550549 MS.gene85613:CDS 40.0%
! ACATCTTCAATCAAGGGCAT+TGG + chr2.1:48550592-48550611 MS.gene85613:CDS 40.0%
! ATTTAATGCACTGGCGTTGA+AGG - chr2.1:48549428-48549447 None:intergenic 40.0%
! CTGTTGTTGTTGAGGAACTA+TGG + chr2.1:48548401-48548420 MS.gene85613:CDS 40.0%
! GATATGAAGGTGGAAAGCAT+TGG + chr2.1:48548758-48548777 MS.gene85613:intron 40.0%
! GGGTGATAATGACCACTATA+AGG - chr2.1:48550141-48550160 None:intergenic 40.0%
! TGATTGTGCTGTTGTTGTTG+AGG + chr2.1:48548393-48548412 MS.gene85613:CDS 40.0%
! TTTAATGCACTGGCGTTGAA+GGG - chr2.1:48549427-48549446 None:intergenic 40.0%
! TTTTTGTGCCTTGTCATCCT+TGG - chr2.1:48549009-48549028 None:intergenic 40.0%
!! ACACTCTAGCTTTCTATCTG+GGG + chr2.1:48549794-48549813 MS.gene85613:CDS 40.0%
!! CAACACTCTAGCTTTCTATC+TGG + chr2.1:48549792-48549811 MS.gene85613:CDS 40.0%
!! CTCTGAAGTTCTCTTCAGTT+GGG - chr2.1:48550161-48550180 None:intergenic 40.0%
!! GAAATCCTAACTTTAGGGCT+TGG - chr2.1:48550689-48550708 None:intergenic 40.0%
!! TCTCTGAAGTTCTCTTCAGT+TGG - chr2.1:48550162-48550181 None:intergenic 40.0%
AAGAAACTGCAGTGTCAAGG+TGG + chr2.1:48548832-48548851 MS.gene85613:CDS 45.0%
AGAAACTGCAGTGTCAAGGT+GGG + chr2.1:48548833-48548852 MS.gene85613:CDS 45.0%
AGCTTCAAGCCAATGTTGGA+GGG - chr2.1:48549036-48549055 None:intergenic 45.0%
AGGTTTGTCCAAGGATGACA+AGG + chr2.1:48548998-48549017 MS.gene85613:CDS 45.0%
ATATCGAACTCGGTACCGTA+GGG + chr2.1:48549519-48549538 MS.gene85613:intron 45.0%
ATGATCGGGTCTAATGCATG+TGG - chr2.1:48549575-48549594 None:intergenic 45.0%
ATTGACCCACGTCATCGTTA+TGG + chr2.1:48549167-48549186 MS.gene85613:CDS 45.0%
CAAACAGCAATTGGGGTTCT+TGG - chr2.1:48550743-48550762 None:intergenic 45.0%
CTTGACCGTCAGATAAAGGT+CGG - chr2.1:48550008-48550027 None:intergenic 45.0%
GCAGCATCAAGCTCAAAAAC+AGG - chr2.1:48548319-48548338 None:intergenic 45.0%
GCCCTTGATTGAAGATGTTC+AGG - chr2.1:48550590-48550609 None:intergenic 45.0%
GGAAGATTAGTGGCACAACA+AGG + chr2.1:48549834-48549853 MS.gene85613:CDS 45.0%
GGTTGGAAAAGGTTTGTCCA+AGG + chr2.1:48548989-48549008 MS.gene85613:intron 45.0%
GTGTCAAGGGTAACATGTTC+TGG - chr2.1:48548217-48548236 None:intergenic 45.0%
TATATCGAACTCGGTACCGT+AGG + chr2.1:48549518-48549537 MS.gene85613:intron 45.0%
TCCAACATACAAAGCCCTAG+TGG - chr2.1:48549751-48549770 None:intergenic 45.0%
TCTCCTAGGCTTGCATACAT+GGG + chr2.1:48550707-48550726 MS.gene85613:CDS 45.0%
TGCTGGGACCTCAAATTTCT+TGG - chr2.1:48550492-48550511 None:intergenic 45.0%
TGTGTCCATAACGATGACGT+GGG - chr2.1:48549175-48549194 None:intergenic 45.0%
TTCTCCTAGGCTTGCATACA+TGG + chr2.1:48550706-48550725 MS.gene85613:CDS 45.0%
TTGTGTCCATAACGATGACG+TGG - chr2.1:48549176-48549195 None:intergenic 45.0%
! ACCACTAGGGCTTTGTATGT+TGG + chr2.1:48549747-48549766 MS.gene85613:CDS 45.0%
! CTAGGGCTTTGTATGTTGGA+AGG + chr2.1:48549751-48549770 MS.gene85613:CDS 45.0%
! CTATATGGTCTTGCAGAAGC+AGG - chr2.1:48550641-48550660 None:intergenic 45.0%
! GGTATTGGGCCATAGCTATA+TGG - chr2.1:48550656-48550675 None:intergenic 45.0%
! TGTAGGTTGGATGTTGGAGA+TGG + chr2.1:48549366-48549385 MS.gene85613:intron 45.0%
!! CAGGCTATTTGGCCTTATAG+TGG + chr2.1:48550126-48550145 MS.gene85613:intron 45.0%
!! GGATTGGTCCCAATGAATGA+AGG - chr2.1:48550350-48550369 None:intergenic 45.0%
!! TTGGCCTTGGAGAAGGTATT+GGG - chr2.1:48550670-48550689 None:intergenic 45.0%
ATGACGTGGGTCAATCTGTG+GGG - chr2.1:48549162-48549181 None:intergenic 50.0%
ATGGCCCAATACCTTCTCCA+AGG + chr2.1:48550663-48550682 MS.gene85613:CDS 50.0%
CAAGGCCAAGCCCTAAAGTT+AGG + chr2.1:48550681-48550700 MS.gene85613:CDS 50.0%
CACAGCTGCTGGAAGATTAG+TGG + chr2.1:48549824-48549843 MS.gene85613:CDS 50.0%
CACTAATCTTCCAGCAGCTG+TGG - chr2.1:48549826-48549845 None:intergenic 50.0%
CAGCTTCAAGCCAATGTTGG+AGG - chr2.1:48549037-48549056 None:intergenic 50.0%
CTCCTAGGCTTGCATACATG+GGG + chr2.1:48550708-48550727 MS.gene85613:CDS 50.0%
GAAACTGCAGTGTCAAGGTG+GGG + chr2.1:48548834-48548853 MS.gene85613:CDS 50.0%
GATGACGTGGGTCAATCTGT+GGG - chr2.1:48549163-48549182 None:intergenic 50.0%
GCTTGATGCTGCAGCAACTA+AGG + chr2.1:48548327-48548346 MS.gene85613:CDS 50.0%
!! CTAACTTTAGGGCTTGGCCT+TGG - chr2.1:48550683-48550702 None:intergenic 50.0%
!! CTTGGCCTTGGAGAAGGTAT+TGG - chr2.1:48550671-48550690 None:intergenic 50.0%
ACAGGAGCTGGACCTCGTAT+TGG + chr2.1:48550548-48550567 MS.gene85613:CDS 55.0%
AGCCCCATGTATGCAAGCCT+AGG - chr2.1:48550713-48550732 None:intergenic 55.0%
CAGGAGCTGGACCTCGTATT+GGG + chr2.1:48550549-48550568 MS.gene85613:CDS 55.0%
CGATGACGTGGGTCAATCTG+TGG - chr2.1:48549164-48549183 None:intergenic 55.0%
GCAATTGGGGTTCTTGGGCT+AGG - chr2.1:48550737-48550756 None:intergenic 55.0%
GGCAAGGACAAGAGCAGCTA+AGG + chr2.1:48548860-48548879 MS.gene85613:CDS 55.0%
GGCACAACAAGGTGTACTCG+AGG + chr2.1:48549845-48549864 MS.gene85613:CDS 55.0%
GGTCTTGCAGAAGCAGGTCT+AGG - chr2.1:48550635-48550654 None:intergenic 55.0%
TCACGCACACACCCAATACG+AGG - chr2.1:48550563-48550582 None:intergenic 55.0%
TGCAAGTGGTCTACAGGAGC+TGG + chr2.1:48550536-48550555 MS.gene85613:CDS 55.0%
TGCAGTGTCAAGGTGGGGAA+GGG + chr2.1:48548839-48548858 MS.gene85613:CDS 55.0%
!! TTAGGGCTTGGCCTTGGAGA+AGG - chr2.1:48550677-48550696 None:intergenic 55.0%
CTGCAGTGTCAAGGTGGGGA+AGG + chr2.1:48548838-48548857 MS.gene85613:CDS 60.0%
TGTCAAGGTGGGGAAGGGCA+AGG + chr2.1:48548844-48548863 MS.gene85613:CDS 60.0%
! TGGCGTTGAAGGGTAGCCCT+TGG - chr2.1:48549417-48549436 None:intergenic 60.0%
GGGGCAGCAACCACAGCTGC+TGG + chr2.1:48549813-48549832 MS.gene85613:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 48548028 48550763 48548028 ID=MS.gene85613
chr2.1 mRNA 48548028 48550763 48548028 ID=MS.gene85613.t1;Parent=MS.gene85613
chr2.1 exon 48548028 48548422 48548028 ID=MS.gene85613.t1.exon1;Parent=MS.gene85613.t1
chr2.1 CDS 48548028 48548422 48548028 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48548767 48548881 48548767 ID=MS.gene85613.t1.exon2;Parent=MS.gene85613.t1
chr2.1 CDS 48548767 48548881 48548767 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48548990 48549055 48548990 ID=MS.gene85613.t1.exon3;Parent=MS.gene85613.t1
chr2.1 CDS 48548990 48549055 48548990 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48549167 48549255 48549167 ID=MS.gene85613.t1.exon4;Parent=MS.gene85613.t1
chr2.1 CDS 48549167 48549255 48549167 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48549371 48549458 48549371 ID=MS.gene85613.t1.exon5;Parent=MS.gene85613.t1
chr2.1 CDS 48549371 48549458 48549371 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48549636 48549866 48549636 ID=MS.gene85613.t1.exon6;Parent=MS.gene85613.t1
chr2.1 CDS 48549636 48549866 48549636 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48550129 48550230 48550129 ID=MS.gene85613.t1.exon7;Parent=MS.gene85613.t1
chr2.1 CDS 48550129 48550230 48550129 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
chr2.1 exon 48550323 48550763 48550323 ID=MS.gene85613.t1.exon8;Parent=MS.gene85613.t1
chr2.1 CDS 48550323 48550763 48550323 ID=cds.MS.gene85613.t1;Parent=MS.gene85613.t1
Gene Sequence

>MS.gene85613

ATGGGATTATCACTTTCTTTACTATCATCAGCTTGGGAAGAAATTGTTAGGCATTCACTCTTTGGTCTTACATTCAACTATAGTTTTGGTTCCAAAGATGGTGCTATGATTTTGAGAACAAGTTTCAACAAAAGAGAATCAGAAACTCCAACAACAAAAAGTTCAACTAGGTTAGAGGATTATAGACCAGAACATGTTACCCTTGACACAAATGTTGATGAAAACTTGAAACATAAGGCAGTGCCTTTGCTTTCTTTGCCTAAAGAAGTTGTTTTCTCTTCTCCAAAACCTGTTTTTGAGCTTGATGCTGCAGCAACTAAGGTTCAGAAAGTTTATAAGAGTTATAGAACTAGAAGAAATCTTGCTGATTGTGCTGTTGTTGTTGAGGAACTATGGTTAGTCTTGTTCTAAAAACAATCTTTTTTATTTTGTGATATTTGATTAAATTCATAGTCAATTTAGTCATTGAAATTATACGAATTTTGATAATTTTGGTCGTTGAATTCAACAATATTTTGAAAACGATTCATGAAATTGAAAATTTTCAATCGTCAATTTAGTCTTTAATATTGTCCCGGAAAACTTGTGATAGAAAATTTTCAATTTTTTGTAATGATTTTGAAATTTGCTTAATTTCAAGATTATAATTTAAGAGAGTAAATTGGTGTAGAGTATTAACTTCTTCTTAGCTTATGTTTTTTGTATGTTATTAAATGGATGGTTTTTAAATGATATGAAGGTGGAAAGCATTGGATTTTGCTGCTCTTAGAAGAAGTTCTGTTTCATTTTTTGATGAACATAAACAAGAAACTGCAGTGTCAAGGTGGGGAAGGGCAAGGACAAGAGCAGCTAAGGTATATTCCATCTGAAATTCAATTTAATTTCTAAAAATTAAACTAAAATTATTCATATTTTTCATTTCACTTTTAAGTTGTCTTTGCTAATTTTTATTTTTCATACAGGTTGGAAAAGGTTTGTCCAAGGATGACAAGGCACAAAAATTAGCCCTCCAACATTGGCTTGAAGCTGTAAGTTATTTATCTTAATATATAATATTATAAATTAATTAACTAACATTAAAATAATATTACATATCTAATCTAATCTTATAATATTAATAATGATTTTTTTCCCCACAGATTGACCCACGTCATCGTTATGGACACAATTTGCACTTATATTATGATATTTGGTTTGAGAGCCAAAGTACTCAACCATTTTTCTATTGGTAAGCTTTTATTCTATGGTACCTAATCATATATGTCTTATTATTGATTGTAATAATTATATGAAGCTAGTAAAAACTATTGAATCTGATAATCTTGATGGTTAACTTTTTGTAGGTTGGATGTTGGAGATGGTAAAGAAATTAATCTTGAGAAATGTCCAAGGGCTACCCTTCAACGCCAGTGCATTAAATATCTTGGACCAGTAAGTTATCAATAGAATATATCACATTTGTAATCAAAATGATAGTAATATTTGAAGTATATATCGAACTCGGTACCGTAGGGTTTATAATATTCATACGCATTGCGCATCAACCACATGCATTAGACCCGATCATAGTATATAATCTAATGTGTATGTTTGATGTTATAATTGCAGAAAGAAAGGGAAGAATATGAAGTAATTGTTGAAAAGGGAAAGTTGGTGTATAGAAAAGATGGGAAGTTTGTGGAGACTGATGAAAAGTCTAAATGGATATTTGTTCTTAGCACCACTAGGGCTTTGTATGTTGGAAGGAAACAAAAGGGTGCTTTTCAACACTCTAGCTTTCTATCTGGGGCAGCAACCACAGCTGCTGGAAGATTAGTGGCACAACAAGGTGTACTCGAGGTAAAAACGCGTAACCATTTTTTTAATTGACCTGAATTCGTTGAAGTTGAAAATCTTAACCGTTGGATGACGATCAGATGATTTGTATTTTTGACTTGTATTTTAAGTCAGACTTAACAACATAAATACACAAATTGTCCGACCTTTATCTGACGGTCAAGATTCACAACTATTCCATGTGTTTTCATTATATTACATAGATATATAATTTTGCATAAGCAAATTTTGCTTACAAATAGTGTTTATTGTATAAACTTTGCAGGCTATTTGGCCTTATAGTGGTCATTATCACCCAACTGAAGAGAACTTCAGAGAATTTGTTAGCTTTCTTGAGGAGCACAAAGTAGACCTCTCTAATGTCAAGGTGAATTTTTATCTAACTAATACTAGTGATCAAAAAAAGTAAATTGGATGTTGAATAAATTATCTTACTTGCTTTTTTTACCCTCTTTTCAGAGATATGCTATAGATGATGATGCACCTTCATTCATTGGGACCAATCCATTTATTGAAACTAATGAATCACAACAAACTATCGACCCTACTCAAACTTCTCAATCAATGTCTACCAATAATGTGAGCAACAAAGGAATCAAAATTAATAATGCAACAGAGGTTAATGCCAAGAAATTTGAGGTCCCAGCATTTGACTTTTCCAAGAGATTATCATGCAAGTGGTCTACAGGAGCTGGACCTCGTATTGGGTGTGTGCGTGACTATCCTGAACATCTTCAATCAAGGGCATTGGAGCAAGTTAGTTTGTCACCTAGACCTGCTTCTGCAAGACCATATAGCTATGGCCCAATACCTTCTCCAAGGCCAAGCCCTAAAGTTAGGATTTCTCCTAGGCTTGCATACATGGGGCTACCTAGCCCAAGAACCCCAATTGCTGTTTGA

Protein sequence

>MS.gene85613.t1

MGLSLSLLSSAWEEIVRHSLFGLTFNYSFGSKDGAMILRTSFNKRESETPTTKSSTRLEDYRPEHVTLDTNVDENLKHKAVPLLSLPKEVVFSSPKPVFELDAAATKVQKVYKSYRTRRNLADCAVVVEELWWKALDFAALRRSSVSFFDEHKQETAVSRWGRARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHLYYDIWFESQSTQPFFYWLDVGDGKEINLEKCPRATLQRQCIKYLGPKEREEYEVIVEKGKLVYRKDGKFVETDEKSKWIFVLSTTRALYVGRKQKGAFQHSSFLSGAATTAAGRLVAQQGVLEAIWPYSGHYHPTEENFREFVSFLEEHKVDLSNVKRYAIDDDAPSFIGTNPFIETNESQQTIDPTQTSQSMSTNNVSNKGIKINNATEVNAKKFEVPAFDFSKRLSCKWSTGAGPRIGCVRDYPEHLQSRALEQVSLSPRPASARPYSYGPIPSPRPSPKVRISPRLAYMGLPSPRTPIAV