AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026101

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026101.t1 MTR_2g039910 98.228 508 9 0 1 508 1 508 0.0 1037
MS.gene026101.t1 MTR_4g126020 75.053 469 87 6 54 507 17 470 0.0 675
MS.gene026101.t1 MTR_8g017580 62.125 433 148 2 74 506 84 500 0.0 563
MS.gene026101.t1 MTR_4g126020 80.864 324 47 2 54 362 17 340 0.0 527
MS.gene026101.t1 MTR_2g099790 53.571 420 158 6 86 499 76 464 1.07e-151 441
MS.gene026101.t1 MTR_2g099790 52.693 427 158 7 86 499 76 471 1.24e-148 434
MS.gene026101.t1 MTR_8g085900 67.626 278 82 2 94 368 126 398 4.63e-140 418
MS.gene026101.t1 MTR_8g085900 59.016 61 24 1 416 476 544 603 3.38e-14 75.9
MS.gene026101.t1 MTR_3g083570 67.286 269 85 1 107 372 5 273 1.33e-136 396
MS.gene026101.t1 MTR_3g083570 69.112 259 77 1 107 362 5 263 8.08e-136 393
MS.gene026101.t1 MTR_8g017580 71.538 260 73 1 74 333 84 342 1.20e-135 397
MS.gene026101.t1 MTR_1g054735 55.966 352 153 2 96 447 66 415 1.43e-131 394
MS.gene026101.t1 MTR_1g054735 35.294 136 64 3 366 501 452 563 7.04e-14 74.7
MS.gene026101.t1 MTR_2g099790 63.475 282 98 2 86 362 76 357 7.82e-131 387
MS.gene026101.t1 MTR_1g060590 47.153 439 190 8 87 486 46 481 9.94e-124 371
MS.gene026101.t1 MTR_3g083570 67.257 226 71 1 107 329 5 230 3.43e-112 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026101.t1 AT4G33050 62.796 465 146 5 41 503 117 556 0.0 574
MS.gene026101.t1 AT4G33050 62.796 465 146 5 41 503 45 484 0.0 573
MS.gene026101.t1 AT4G33050 58.052 503 146 6 41 503 45 522 0.0 556
MS.gene026101.t1 AT2G26190 56.490 547 180 8 1 506 1 530 0.0 543
MS.gene026101.t1 AT2G26190 56.490 547 180 8 1 506 1 530 0.0 543
MS.gene026101.t1 AT5G57010 63.571 420 114 4 84 503 114 494 0.0 539
MS.gene026101.t1 AT2G26190 59.750 400 120 4 1 362 1 397 1.23e-154 447
MS.gene026101.t1 AT3G13600 69.373 271 78 2 104 369 108 378 3.45e-139 414
MS.gene026101.t1 AT3G13600 50.562 89 40 2 416 504 517 601 1.50e-17 86.3
MS.gene026101.t1 AT3G13600 69.373 271 78 2 104 369 108 378 3.45e-139 414
MS.gene026101.t1 AT3G13600 50.562 89 40 2 416 504 517 601 1.50e-17 86.3
MS.gene026101.t1 AT4G33050 66.781 292 94 2 41 330 45 335 6.01e-134 391
MS.gene026101.t1 AT3G58480 59.190 321 126 2 104 419 98 418 3.37e-133 398
MS.gene026101.t1 AT3G58480 56.250 48 21 0 423 470 498 545 4.03e-11 65.9
MS.gene026101.t1 AT3G52870 47.891 403 172 5 104 472 49 447 2.51e-130 387
MS.gene026101.t1 AT4G33050 59.091 330 94 3 41 330 45 373 4.58e-126 373
MS.gene026101.t1 AT4G33050 68.075 213 65 2 41 251 45 256 3.23e-95 289

Find 123 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTTGTATTATGATATT+TGG 0.123820 2.2:-47692862 MS.gene026101:CDS
TCCTTTGTTGCTCGCATTAT+TGG 0.190821 2.2:+47691627 None:intergenic
GATTCATTAGTTTCAATAAA+TGG 0.225018 2.2:+47691694 None:intergenic
CAAACAGCAATTGGGGTTCT+TGG 0.242705 2.2:+47691322 None:intergenic
CAAAATCATAGCACCATCTT+TGG 0.243712 2.2:+47693946 None:intergenic
CAACACTCTAGCTTTCTATC+TGG 0.277196 2.2:-47692269 MS.gene026101:CDS
ATTGTTAGGCATTCACTCTT+TGG 0.277775 2.2:-47693995 MS.gene026101:CDS
TGCTGGGACCTCAAATTTCT+TGG 0.285980 2.2:+47691573 None:intergenic
TAGGAGAAATCCTAACTTTA+GGG 0.286465 2.2:+47691371 None:intergenic
CTTACATTCAACTATAGTTT+TGG 0.302288 2.2:-47693971 MS.gene026101:CDS
TTGGCCTTGGAGAAGGTATT+GGG 0.317413 2.2:+47691395 None:intergenic
TAATGAATCACAACAAACTA+TGG 0.319646 2.2:-47691680 MS.gene026101:CDS
GAAGAGAAAACAACTTCTTT+AGG 0.325682 2.2:+47693779 None:intergenic
CTAGGAGAAATCCTAACTTT+AGG 0.328618 2.2:+47691370 None:intergenic
GCCCTTGATTGAAGGTGTTC+AGG 0.335286 2.2:+47691475 None:intergenic
CTTGGCCTTGGAGAAGGTAT+TGG 0.342306 2.2:+47691394 None:intergenic
TACTTGCCTCAAACAGCAAT+TGG 0.345712 2.2:+47691313 None:intergenic
GTGTCAAGGGTAACATGTTC+TGG 0.349098 2.2:+47693851 None:intergenic
CGCCAGTGCATTAAATATCT+TGG 0.351341 2.2:-47692630 MS.gene026101:CDS
CTGTTGTTGTTGAGGAACTA+TGG 0.353192 2.2:-47693664 MS.gene026101:intron
TTCTCCTAGGCTTGCATACA+TGG 0.355525 2.2:-47691356 MS.gene026101:CDS
GATGATGCACCTTCATTCAT+TGG 0.357552 2.2:-47691724 MS.gene026101:CDS
AACACTCTAGCTTTCTATCT+GGG 0.360244 2.2:-47692268 MS.gene026101:CDS
CTCTGAAGTTCTCTTCAGTT+GGG 0.374129 2.2:+47691903 None:intergenic
CTGGAGCTGGACCTCGTATT+GGG 0.379598 2.2:-47691513 MS.gene026101:CDS
ACTGGAGCTGGACCTCGTAT+TGG 0.380423 2.2:-47691514 MS.gene026101:CDS
GGGGCCGCAACCACAGCTGC+TGG 0.395935 2.2:-47692248 MS.gene026101:CDS
GGTATTGGGCCATAGCTATA+TGG 0.404459 2.2:+47691409 None:intergenic
TTCTTTACTATCATCAGCTT+GGG 0.405123 2.2:-47694023 MS.gene026101:CDS
GGGTGATAATGACCACTATA+AGG 0.406891 2.2:+47691923 None:intergenic
ACTTGCCTCAAACAGCAATT+GGG 0.408107 2.2:+47691314 None:intergenic
AAACAGCAATTGGGGTTCTT+GGG 0.411345 2.2:+47691323 None:intergenic
CAGCTTGGGAAGAAATTGTT+AGG 0.416385 2.2:-47694009 MS.gene026101:CDS
GCTCCAATGCCCTTGATTGA+AGG 0.416483 2.2:+47691467 None:intergenic
CAAGGCCAAGCCCTAAAGTT+AGG 0.416656 2.2:-47691381 MS.gene026101:CDS
TTATCATGCAAGTGGTCTAC+TGG 0.419110 2.2:-47691532 MS.gene026101:CDS
ATATGAAGTAATTGTTGAAA+AGG 0.423105 2.2:-47692411 MS.gene026101:CDS
ATTTAATGCACTGGCGTTGA+AGG 0.425705 2.2:+47692637 None:intergenic
GAAATCCTAACTTTAGGGCT+TGG 0.428504 2.2:+47691376 None:intergenic
CTAACTTTAGGGCTTGGCCT+TGG 0.434652 2.2:+47691382 None:intergenic
GCTAAGAACAAATATCCATT+TGG 0.436044 2.2:+47692337 None:intergenic
CTCTTGGAAAAGTCAAATGC+TGG 0.442683 2.2:+47691556 None:intergenic
TGTTATAATTGCAGAAAGAA+AGG 0.444730 2.2:-47692439 MS.gene026101:intron
TCTCTGAAGTTCTCTTCAGT+TGG 0.451697 2.2:+47691902 None:intergenic
CCACTTGCATGATAATCTCT+TGG 0.452364 2.2:+47691540 None:intergenic
ATTAGTTTCAATAAATGGAT+TGG 0.452855 2.2:+47691699 None:intergenic
TATGAAGTAATTGTTGAAAA+GGG 0.453381 2.2:-47692410 MS.gene026101:CDS
GCTTGATGCTGCAGCAACTA+AGG 0.459781 2.2:-47693738 MS.gene026101:CDS
GTATGTTGGAAGGAAACAAA+AGG 0.459878 2.2:-47692300 MS.gene026101:CDS
TTTCTTTACTATCATCAGCT+TGG 0.460682 2.2:-47694024 MS.gene026101:CDS
TAGAAAAGATGGAAAGTTTG+TGG 0.467013 2.2:-47692375 MS.gene026101:CDS
ATTGATTGAGAAGTTTGAGT+AGG 0.469055 2.2:+47691655 None:intergenic
ATGATGCACCTTCATTCATT+GGG 0.470656 2.2:-47691723 MS.gene026101:CDS
TTCATCAACATTTGTGTCAA+GGG 0.476869 2.2:+47693838 None:intergenic
TCTCCTAGGCTTGCATACAT+GGG 0.479470 2.2:-47691355 MS.gene026101:CDS
AGCAAGGACTAGAGCAGCTA+AGG 0.483710 2.2:-47693205 MS.gene026101:intron
GCAATTGGGGTTCTTGGGCT+AGG 0.483909 2.2:+47691328 None:intergenic
AGAACCCCAATTGCTGTTTG+AGG 0.487231 2.2:-47691319 None:intergenic
TGCAAGTGGTCTACTGGAGC+TGG 0.489569 2.2:-47691526 MS.gene026101:CDS
GTCCAAGATATTTAATGCAC+TGG 0.489596 2.2:+47692628 None:intergenic
CAGCTTCAAGCCAATGTTGG+AGG 0.493190 2.2:+47693032 None:intergenic
ATCCTGAACACCTTCAATCA+AGG 0.494301 2.2:-47691477 MS.gene026101:CDS
AAGTTAGTGTATAGAAAAGA+TGG 0.497476 2.2:-47692386 MS.gene026101:CDS
CACTAATCTTCCAGCAGCTG+TGG 0.502889 2.2:+47692238 None:intergenic
CTAAAGTTAGGATTTCTCCT+AGG 0.503091 2.2:-47691369 MS.gene026101:CDS
CACAGCTGCTGGAAGATTAG+TGG 0.503574 2.2:-47692237 MS.gene026101:CDS
GTTATAATTGCAGAAAGAAA+GGG 0.503902 2.2:-47692438 MS.gene026101:intron
CAGGCTATTTGGCCTTATAG+TGG 0.505306 2.2:-47691935 MS.gene026101:CDS
TTAGGGCTTGGCCTTGGAGA+AGG 0.507353 2.2:+47691388 None:intergenic
TTTCATCAACATTTGTGTCA+AGG 0.510168 2.2:+47693837 None:intergenic
GGTCTTGCAGAAGCAGGTCT+AGG 0.511439 2.2:+47691430 None:intergenic
ACCAATAATGCGAGCAACAA+AGG 0.513743 2.2:-47691628 MS.gene026101:CDS
ACCACTAGGGCTTTGTATGT+TGG 0.515347 2.2:-47692314 MS.gene026101:CDS
TGGCGTTGAAGGGTAGCCCT+TGG 0.518338 2.2:+47692648 None:intergenic
TGATGAAAACTTGAAACATA+AGG 0.518550 2.2:-47693822 MS.gene026101:CDS
CTATATGGTCTTGCAGAAGC+AGG 0.519094 2.2:+47691424 None:intergenic
GGTTAATGCCAAGAAATTTG+AGG 0.520668 2.2:-47691581 MS.gene026101:CDS
AGAATTTGTTAGCTTTCTTG+AGG 0.528950 2.2:-47691882 MS.gene026101:CDS
AGACTGATGAAAAGTCCAAA+TGG 0.530334 2.2:-47692352 MS.gene026101:CDS
TTGATTGAGAAGTTTGAGTA+GGG 0.533972 2.2:+47691656 None:intergenic
ACACCTTCAATCAAGGGCAT+TGG 0.535510 2.2:-47691470 MS.gene026101:CDS
TTACAGCTTCAAGCCAATGT+TGG 0.537705 2.2:+47693029 None:intergenic
TGATTGTGCTGTTGTTGTTG+AGG 0.543569 2.2:-47693672 MS.gene026101:CDS
CCAAGAGATTATCATGCAAG+TGG 0.547249 2.2:-47691540 MS.gene026101:CDS
TGTAGGTTGGATGTTGGAGA+TGG 0.548321 2.2:-47692696 MS.gene026101:intron
TCTTCCAGCAGCTGTGGTTG+CGG 0.548897 2.2:+47692244 None:intergenic
TATTTGTTCTTAGCACCACT+AGG 0.553975 2.2:-47692328 MS.gene026101:CDS
CTTGCCTCAAACAGCAATTG+GGG 0.561115 2.2:+47691315 None:intergenic
ATTGACCCACGTCATCGCTA+TGG 0.565300 2.2:-47692893 MS.gene026101:CDS
AGCTTCAAGCCAATGTTGGA+GGG 0.566073 2.2:+47693033 None:intergenic
CTAGGGCTTTGTATGTTGGA+AGG 0.566948 2.2:-47692310 MS.gene026101:CDS
GATATGAAGGTGGAAAGCAT+TGG 0.567332 2.2:-47693307 MS.gene026101:intron
AGAAACTGCAGTGTCAAGGT+GGG 0.571406 2.2:-47693232 MS.gene026101:CDS
TCTTGGAAAAGTCAAATGCT+GGG 0.575381 2.2:+47691557 None:intergenic
CTTTCTTGAGGAGCACAAAG+TGG 0.581632 2.2:-47691870 MS.gene026101:CDS
TATGTTGGAAGGAAACAAAA+GGG 0.583609 2.2:-47692299 MS.gene026101:CDS
TCTGCAAGACCATATAGCTA+TGG 0.585307 2.2:-47691418 MS.gene026101:CDS
TTTAATGCACTGGCGTTGAA+GGG 0.586946 2.2:+47692638 None:intergenic
AACAAGAAACTGCAGTGTCA+AGG 0.588506 2.2:-47693236 MS.gene026101:CDS
ATTTGTTCTTAGCACCACTA+GGG 0.589990 2.2:-47692327 MS.gene026101:CDS
CAAAATTAATAATGCAACAG+AGG 0.596595 2.2:-47691602 MS.gene026101:CDS
TTAATCTTGAGAAATGTCCA+AGG 0.602258 2.2:-47692665 MS.gene026101:CDS
CTCCTAGGCTTGCATACATG+GGG 0.604327 2.2:-47691354 MS.gene026101:CDS
AGGTCTGTCCAAGGATGACA+AGG 0.605249 2.2:-47693068 MS.gene026101:CDS
TCCTGAACACCTTCAATCAA+GGG 0.605858 2.2:-47691476 MS.gene026101:CDS
TTGTGTCCATAGCGATGACG+TGG 0.606284 2.2:+47692887 None:intergenic
AAGAAACTGCAGTGTCAAGG+TGG 0.608522 2.2:-47693233 MS.gene026101:CDS
ACACTCTAGCTTTCTATCTG+GGG 0.613665 2.2:-47692267 MS.gene026101:CDS
GGATTGGTCCCAATGAATGA+AGG 0.630179 2.2:+47691715 None:intergenic
TCTTTAGGCAAAGAAAGCAA+AGG 0.635023 2.2:+47693794 None:intergenic
AGCCCCATGTATGCAAGCCT+AGG 0.635290 2.2:+47691352 None:intergenic
AGTGGACCTCTCTAATGTCA+AGG 0.638394 2.2:-47691852 MS.gene026101:intron
AATTCACCTTGACATTAGAG+AGG 0.640988 2.2:+47691846 None:intergenic
TGTCAAGGTGGGGAAGAGCA+AGG 0.642133 2.2:-47693221 MS.gene026101:CDS
GAAACTGCAGTGTCAAGGTG+GGG 0.643986 2.2:-47693231 MS.gene026101:CDS
GGTTGGAAAAGGTCTGTCCA+AGG 0.645077 2.2:-47693077 MS.gene026101:CDS
GGAAGATTAGTGGCACAACA+AGG 0.648672 2.2:-47692227 MS.gene026101:CDS
ATGGCCCAATACCTTCTCCA+AGG 0.649248 2.2:-47691399 MS.gene026101:CDS
TAATCTTGAGAAATGTCCAA+GGG 0.660398 2.2:-47692664 MS.gene026101:CDS
TCCAACATACAAAGCCCTAG+TGG 0.663510 2.2:+47692313 None:intergenic
GGCACAACAAGGTGTACTCG+AGG 0.687576 2.2:-47692216 MS.gene026101:intron
TCACGCACACACCCAATACG+AGG 0.694431 2.2:+47691502 None:intergenic
TGTGTCCATAGCGATGACGT+GGG 0.734536 2.2:+47692888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATAATATTATATT+AGG + chr2.2:47692364-47692383 None:intergenic 0.0%
!! AAATTAAATTGAATTTGAAA+TGG + chr2.2:47692185-47692204 None:intergenic 10.0%
!!! TATTTGTTATTTCATTTTTA+AGG - chr2.2:47692229-47692248 MS.gene026101:CDS 10.0%
!! ATTAGATTATATACTATCAT+CGG + chr2.2:47692887-47692906 None:intergenic 15.0%
!! TGAAAAATAAAAATTAGCAA+AGG + chr2.2:47692257-47692276 None:intergenic 15.0%
!!! CTAATTTTTATTTTTCATAC+AGG - chr2.2:47692260-47692279 MS.gene026101:CDS 15.0%
!!! GTTTTTTGTATGTTATTAAA+TGG - chr2.2:47692015-47692034 MS.gene026101:intron 15.0%
!!! TATACGAATTTTGATAATTT+TGG - chr2.2:47691793-47691812 MS.gene026101:intron 15.0%
!! ATATGAAGTAATTGTTGAAA+AGG - chr2.2:47692947-47692966 MS.gene026101:intron 20.0%
!! ATTCAGGTCAATTAAAAAAA+TGG + chr2.2:47693181-47693200 None:intergenic 20.0%
!! TAGTGAACAAAAAAGTAAAT+TGG - chr2.2:47693551-47693570 MS.gene026101:intron 20.0%
!! TATAATTTGAGAGAGTAAAT+TGG - chr2.2:47691963-47691982 MS.gene026101:intron 20.0%
!! TATGAAGTAATTGTTGAAAA+GGG - chr2.2:47692948-47692967 MS.gene026101:intron 20.0%
!! TCAATAAGATATAGATGATT+AGG + chr2.2:47692579-47692598 None:intergenic 20.0%
!! TGTAATATAATGAAAACACA+TGG + chr2.2:47693341-47693360 None:intergenic 20.0%
!! TTAGATTATATACTATCATC+GGG + chr2.2:47692886-47692905 None:intergenic 20.0%
!! TTTGTATGTTATTAAATGGA+TGG - chr2.2:47692019-47692038 MS.gene026101:intron 20.0%
!!! ATGGTTTTTAAATGATATGA+AGG - chr2.2:47692038-47692057 MS.gene026101:intron 20.0%
!!! ATTAGTTTCAATAAATGGAT+TGG + chr2.2:47693662-47693681 None:intergenic 20.0%
!!! GATTCATTAGTTTCAATAAA+TGG + chr2.2:47693667-47693686 None:intergenic 20.0%
!!! GTTTATTGTATAAATTTTGC+AGG - chr2.2:47693404-47693423 MS.gene026101:intron 20.0%
!!! TTTTAAGTATATATCGAACT+CGG - chr2.2:47692805-47692824 MS.gene026101:intron 20.0%
!!! TTTTTATTTTTCATACAGGT+TGG - chr2.2:47692264-47692283 MS.gene026101:CDS 20.0%
! AAAGCTTACCAATAGAAAAA+TGG + chr2.2:47692543-47692562 None:intergenic 25.0%
! AAGTTAGTGTATAGAAAAGA+TGG - chr2.2:47692972-47692991 MS.gene026101:intron 25.0%
! ATAATCTACTGATAACTTAC+TGG + chr2.2:47692755-47692774 None:intergenic 25.0%
! ATGAAGCTAGTAAAAACTAT+TGG - chr2.2:47692612-47692631 MS.gene026101:intron 25.0%
! CAAAATTAATAATGCAACAG+AGG - chr2.2:47693756-47693775 MS.gene026101:CDS 25.0%
! GTTATAATTGCAGAAAGAAA+GGG - chr2.2:47692920-47692939 MS.gene026101:intron 25.0%
! TAATGAATCACAACAAACTA+TGG - chr2.2:47693678-47693697 MS.gene026101:CDS 25.0%
! TAGATTATATACTATCATCG+GGG + chr2.2:47692885-47692904 None:intergenic 25.0%
! TATAGATGATTAGGTACTAT+AGG + chr2.2:47692570-47692589 None:intergenic 25.0%
! TGATGAAAACTTGAAACATA+AGG - chr2.2:47691536-47691555 MS.gene026101:CDS 25.0%
! TGCACTTGTATTATGATATT+TGG - chr2.2:47692496-47692515 MS.gene026101:intron 25.0%
! TGTTATAATTGCAGAAAGAA+AGG - chr2.2:47692919-47692938 MS.gene026101:intron 25.0%
!! ATTTTCTATCACAAGTTTTC+CGG + chr2.2:47691898-47691917 None:intergenic 25.0%
!! CTTACATTCAACTATAGTTT+TGG - chr2.2:47691387-47691406 MS.gene026101:CDS 25.0%
!! GTTTTTAAATGATATGAAGG+TGG - chr2.2:47692041-47692060 MS.gene026101:intron 25.0%
!! TATAAATTTTGCAGGCTATT+TGG - chr2.2:47693412-47693431 MS.gene026101:intron 25.0%
!! TTTAGTCTTTAATATTGTCC+CGG - chr2.2:47691876-47691895 MS.gene026101:CDS 25.0%
!!! ATGGTAAATTTTTTGTAGGT+TGG - chr2.2:47692649-47692668 MS.gene026101:CDS 25.0%
!!! CTTGATGGTAAATTTTTTGT+AGG - chr2.2:47692645-47692664 MS.gene026101:CDS 25.0%
AAAAAGTTCAACTAGGTTAG+AGG - chr2.2:47691476-47691495 MS.gene026101:CDS 30.0%
AAGTTGTAAATCTTAACCGT+TGG - chr2.2:47693207-47693226 MS.gene026101:CDS 30.0%
AGAAAAATGGTTGAGTACTT+TGG + chr2.2:47692530-47692549 None:intergenic 30.0%
ATTGATTGAGAAGTTTGAGT+AGG + chr2.2:47693706-47693725 None:intergenic 30.0%
CAACAACAAAAAGTTCAACT+AGG - chr2.2:47691469-47691488 MS.gene026101:CDS 30.0%
GAAGAGAAAACAACTTCTTT+AGG + chr2.2:47691582-47691601 None:intergenic 30.0%
GCTAAGAACAAATATCCATT+TGG + chr2.2:47693024-47693043 None:intergenic 30.0%
TAATCTTGAGAAATGTCCAA+GGG - chr2.2:47692694-47692713 MS.gene026101:CDS 30.0%
TAGAAAAGATGGAAAGTTTG+TGG - chr2.2:47692983-47693002 MS.gene026101:intron 30.0%
TAGGAGAAATCCTAACTTTA+GGG + chr2.2:47693990-47694009 None:intergenic 30.0%
TATGTTGGAAGGAAACAAAA+GGG - chr2.2:47693059-47693078 MS.gene026101:CDS 30.0%
TTAATCTTGAGAAATGTCCA+AGG - chr2.2:47692693-47692712 MS.gene026101:CDS 30.0%
TTCATCAACATTTGTGTCAA+GGG + chr2.2:47691523-47691542 None:intergenic 30.0%
TTCTTTACTATCATCAGCTT+GGG - chr2.2:47691335-47691354 MS.gene026101:CDS 30.0%
TTGATTGAGAAGTTTGAGTA+GGG + chr2.2:47693705-47693724 None:intergenic 30.0%
TTTACAACTTCAACGAATTC+AGG + chr2.2:47693197-47693216 None:intergenic 30.0%
TTTCATCAACATTTGTGTCA+AGG + chr2.2:47691524-47691543 None:intergenic 30.0%
TTTCTTTACTATCATCAGCT+TGG - chr2.2:47691334-47691353 MS.gene026101:CDS 30.0%
! ATAGCATATCTCTGAAAAGA+GGG + chr2.2:47693610-47693629 None:intergenic 30.0%
! TATAGCATATCTCTGAAAAG+AGG + chr2.2:47693611-47693630 None:intergenic 30.0%
! TTTTCTATCACAAGTTTTCC+GGG + chr2.2:47691897-47691916 None:intergenic 30.0%
!! AGAATTTGTTAGCTTTCTTG+AGG - chr2.2:47693476-47693495 MS.gene026101:intron 30.0%
!! CTAGTTGAACTTTTTGTTGT+TGG + chr2.2:47691471-47691490 None:intergenic 30.0%
!! GTACTCAACCATTTTTCTAT+TGG - chr2.2:47692532-47692551 MS.gene026101:intron 30.0%
!! TTTTTCATACAGGTTGGAAA+AGG - chr2.2:47692270-47692289 MS.gene026101:CDS 30.0%
!!! ATTTTTTGTAGGTTGGATGT+TGG - chr2.2:47692656-47692675 MS.gene026101:CDS 30.0%
!!! TATAGTTTTGGTTCCAAAGA+TGG - chr2.2:47691399-47691418 MS.gene026101:CDS 30.0%
AAAAATTAGCCCTCCAACAT+TGG - chr2.2:47692316-47692335 MS.gene026101:CDS 35.0%
AATTCACCTTGACATTAGAG+AGG + chr2.2:47693515-47693534 None:intergenic 35.0%
AGACTGATGAAAAGTCCAAA+TGG - chr2.2:47693006-47693025 MS.gene026101:intron 35.0%
ATCATCTGATTGTCATCCAA+CGG + chr2.2:47693226-47693245 None:intergenic 35.0%
ATGATGCACCTTCATTCATT+GGG - chr2.2:47693635-47693654 MS.gene026101:intron 35.0%
ATTGGAGCTGATAATCTTGA+TGG - chr2.2:47692630-47692649 MS.gene026101:CDS 35.0%
ATTGTTAGGCATTCACTCTT+TGG - chr2.2:47691363-47691382 MS.gene026101:CDS 35.0%
ATTTGTTCTTAGCACCACTA+GGG - chr2.2:47693031-47693050 MS.gene026101:intron 35.0%
CAAAATCATAGCACCATCTT+TGG + chr2.2:47691415-47691434 None:intergenic 35.0%
CTAAAGTTAGGATTTCTCCT+AGG - chr2.2:47693989-47694008 MS.gene026101:CDS 35.0%
CTAGGAGAAATCCTAACTTT+AGG + chr2.2:47693991-47694010 None:intergenic 35.0%
GGTTAATGCCAAGAAATTTG+AGG - chr2.2:47693777-47693796 MS.gene026101:CDS 35.0%
GTATGTTGGAAGGAAACAAA+AGG - chr2.2:47693058-47693077 MS.gene026101:CDS 35.0%
GTCCAAGATATTTAATGCAC+TGG + chr2.2:47692733-47692752 None:intergenic 35.0%
TATTTGTTCTTAGCACCACT+AGG - chr2.2:47693030-47693049 MS.gene026101:intron 35.0%
TCTGACTATTATAAACCCTG+AGG + chr2.2:47692833-47692852 None:intergenic 35.0%
TCTTGGAAAAGTCAAATGCT+GGG + chr2.2:47693804-47693823 None:intergenic 35.0%
TCTTTAGGCAAAGAAAGCAA+AGG + chr2.2:47691567-47691586 None:intergenic 35.0%
! TCAAGCTCAAAAACAGGTTT+TGG + chr2.2:47691606-47691625 None:intergenic 35.0%
!! AACACTCTAGCTTTCTATCT+GGG - chr2.2:47693090-47693109 MS.gene026101:intron 35.0%
AAACAGCAATTGGGGTTCTT+GGG + chr2.2:47694038-47694057 None:intergenic 40.0%
AACAAGAAACTGCAGTGTCA+AGG - chr2.2:47692122-47692141 MS.gene026101:intron 40.0%
ACCAATAATGCGAGCAACAA+AGG - chr2.2:47693730-47693749 MS.gene026101:CDS 40.0%
ATCCTGAACACCTTCAATCA+AGG - chr2.2:47693881-47693900 MS.gene026101:CDS 40.0%
ATTGTCCGACCTTTATCTGA+CGG - chr2.2:47693297-47693316 MS.gene026101:CDS 40.0%
CAGCTTGGGAAGAAATTGTT+AGG - chr2.2:47691349-47691368 MS.gene026101:CDS 40.0%
CCAAGAGATTATCATGCAAG+TGG - chr2.2:47693818-47693837 MS.gene026101:CDS 40.0%
CCACTTGCATGATAATCTCT+TGG + chr2.2:47693821-47693840 None:intergenic 40.0%
CGCCAGTGCATTAAATATCT+TGG - chr2.2:47692728-47692747 MS.gene026101:intron 40.0%
CTCTTGGAAAAGTCAAATGC+TGG + chr2.2:47693805-47693824 None:intergenic 40.0%
GAATCTTGACCGTCAGATAA+AGG + chr2.2:47693309-47693328 None:intergenic 40.0%
GATGATGCACCTTCATTCAT+TGG - chr2.2:47693634-47693653 MS.gene026101:intron 40.0%
TCCTGAACACCTTCAATCAA+GGG - chr2.2:47693882-47693901 MS.gene026101:CDS 40.0%
TCCTTTGTTGCTCGCATTAT+TGG + chr2.2:47693734-47693753 None:intergenic 40.0%
TCTGCAAGACCATATAGCTA+TGG - chr2.2:47693940-47693959 MS.gene026101:CDS 40.0%
TTACAGCTTCAAGCCAATGT+TGG + chr2.2:47692332-47692351 None:intergenic 40.0%
TTATCATGCAAGTGGTCTAC+TGG - chr2.2:47693826-47693845 MS.gene026101:CDS 40.0%
! ATTTAATGCACTGGCGTTGA+AGG + chr2.2:47692724-47692743 None:intergenic 40.0%
! CTGTTGTTGTTGAGGAACTA+TGG - chr2.2:47691694-47691713 MS.gene026101:CDS 40.0%
! GATATGAAGGTGGAAAGCAT+TGG - chr2.2:47692051-47692070 MS.gene026101:intron 40.0%
! GGGTGATAATGACCACTATA+AGG + chr2.2:47693438-47693457 None:intergenic 40.0%
! TGATTGTGCTGTTGTTGTTG+AGG - chr2.2:47691686-47691705 MS.gene026101:CDS 40.0%
! TTTAATGCACTGGCGTTGAA+GGG + chr2.2:47692723-47692742 None:intergenic 40.0%
! TTTTTGTGCCTTGTCATCCT+TGG + chr2.2:47692301-47692320 None:intergenic 40.0%
!! ACACTCTAGCTTTCTATCTG+GGG - chr2.2:47693091-47693110 MS.gene026101:intron 40.0%
!! CAACACTCTAGCTTTCTATC+TGG - chr2.2:47693089-47693108 MS.gene026101:intron 40.0%
!! CTCTGAAGTTCTCTTCAGTT+GGG + chr2.2:47693458-47693477 None:intergenic 40.0%
!! GAAATCCTAACTTTAGGGCT+TGG + chr2.2:47693985-47694004 None:intergenic 40.0%
!! TCTCTGAAGTTCTCTTCAGT+TGG + chr2.2:47693459-47693478 None:intergenic 40.0%
AAGAAACTGCAGTGTCAAGG+TGG - chr2.2:47692125-47692144 MS.gene026101:intron 45.0%
AGAAACTGCAGTGTCAAGGT+GGG - chr2.2:47692126-47692145 MS.gene026101:intron 45.0%
AGCTTCAAGCCAATGTTGGA+GGG + chr2.2:47692328-47692347 None:intergenic 45.0%
AGTGGACCTCTCTAATGTCA+AGG - chr2.2:47693506-47693525 MS.gene026101:intron 45.0%
ATATCGAACTCGGTACCTCA+GGG - chr2.2:47692815-47692834 MS.gene026101:intron 45.0%
CAAACAGCAATTGGGGTTCT+TGG + chr2.2:47694039-47694058 None:intergenic 45.0%
CTTGACCGTCAGATAAAGGT+CGG + chr2.2:47693305-47693324 None:intergenic 45.0%
GCAGCATCAAGCTCAAAAAC+AGG + chr2.2:47691612-47691631 None:intergenic 45.0%
GGAAGATTAGTGGCACAACA+AGG - chr2.2:47693131-47693150 MS.gene026101:intron 45.0%
GTGTCAAGGGTAACATGTTC+TGG + chr2.2:47691510-47691529 None:intergenic 45.0%
TATATCGAACTCGGTACCTC+AGG - chr2.2:47692814-47692833 MS.gene026101:intron 45.0%
TCCAACATACAAAGCCCTAG+TGG + chr2.2:47693048-47693067 None:intergenic 45.0%
TCTCCTAGGCTTGCATACAT+GGG - chr2.2:47694003-47694022 MS.gene026101:CDS 45.0%
TGCTGGGACCTCAAATTTCT+TGG + chr2.2:47693788-47693807 None:intergenic 45.0%
TTCTCCTAGGCTTGCATACA+TGG - chr2.2:47694002-47694021 MS.gene026101:CDS 45.0%
! ACACCTTCAATCAAGGGCAT+TGG - chr2.2:47693888-47693907 MS.gene026101:CDS 45.0%
! ACCACTAGGGCTTTGTATGT+TGG - chr2.2:47693044-47693063 MS.gene026101:CDS 45.0%
! CTAGGGCTTTGTATGTTGGA+AGG - chr2.2:47693048-47693067 MS.gene026101:CDS 45.0%
! CTATATGGTCTTGCAGAAGC+AGG + chr2.2:47693937-47693956 None:intergenic 45.0%
! CTTTCTTGAGGAGCACAAAG+TGG - chr2.2:47693488-47693507 MS.gene026101:intron 45.0%
! GGTATTGGGCCATAGCTATA+TGG + chr2.2:47693952-47693971 None:intergenic 45.0%
! TGTAGGTTGGATGTTGGAGA+TGG - chr2.2:47692662-47692681 MS.gene026101:CDS 45.0%
!! CAGGCTATTTGGCCTTATAG+TGG - chr2.2:47693423-47693442 MS.gene026101:intron 45.0%
!! GGATTGGTCCCAATGAATGA+AGG + chr2.2:47693646-47693665 None:intergenic 45.0%
!! TTGGCCTTGGAGAAGGTATT+GGG + chr2.2:47693966-47693985 None:intergenic 45.0%
AGCAAGGACTAGAGCAGCTA+AGG - chr2.2:47692153-47692172 MS.gene026101:intron 50.0%
AGGTCTGTCCAAGGATGACA+AGG - chr2.2:47692290-47692309 MS.gene026101:CDS 50.0%
ATGGCCCAATACCTTCTCCA+AGG - chr2.2:47693959-47693978 MS.gene026101:CDS 50.0%
ATTGACCCACGTCATCGCTA+TGG - chr2.2:47692465-47692484 MS.gene026101:intron 50.0%
CAAGGCCAAGCCCTAAAGTT+AGG - chr2.2:47693977-47693996 MS.gene026101:CDS 50.0%
CACAGCTGCTGGAAGATTAG+TGG - chr2.2:47693121-47693140 MS.gene026101:intron 50.0%
CACTAATCTTCCAGCAGCTG+TGG + chr2.2:47693123-47693142 None:intergenic 50.0%
CAGCTTCAAGCCAATGTTGG+AGG + chr2.2:47692329-47692348 None:intergenic 50.0%
CTCCTAGGCTTGCATACATG+GGG - chr2.2:47694004-47694023 MS.gene026101:CDS 50.0%
GAAACTGCAGTGTCAAGGTG+GGG - chr2.2:47692127-47692146 MS.gene026101:intron 50.0%
GCTCCAATGCCCTTGATTGA+AGG + chr2.2:47693894-47693913 None:intergenic 50.0%
GCTTGATGCTGCAGCAACTA+AGG - chr2.2:47691620-47691639 MS.gene026101:CDS 50.0%
GGTTGGAAAAGGTCTGTCCA+AGG - chr2.2:47692281-47692300 MS.gene026101:CDS 50.0%
TCATCGGGGTCTAATGCATG+TGG + chr2.2:47692871-47692890 None:intergenic 50.0%
TGTGTCCATAGCGATGACGT+GGG + chr2.2:47692473-47692492 None:intergenic 50.0%
TTGTGTCCATAGCGATGACG+TGG + chr2.2:47692474-47692493 None:intergenic 50.0%
!! CTAACTTTAGGGCTTGGCCT+TGG + chr2.2:47693979-47693998 None:intergenic 50.0%
!! CTTGGCCTTGGAGAAGGTAT+TGG + chr2.2:47693967-47693986 None:intergenic 50.0%
!! GCCCTTGATTGAAGGTGTTC+AGG + chr2.2:47693886-47693905 None:intergenic 50.0%
ACTGGAGCTGGACCTCGTAT+TGG - chr2.2:47693844-47693863 MS.gene026101:CDS 55.0%
AGCCCCATGTATGCAAGCCT+AGG + chr2.2:47694009-47694028 None:intergenic 55.0%
CGATGACGTGGGTCAATCTG+TGG + chr2.2:47692462-47692481 None:intergenic 55.0%
CTGGAGCTGGACCTCGTATT+GGG - chr2.2:47693845-47693864 MS.gene026101:CDS 55.0%
GCAATTGGGGTTCTTGGGCT+AGG + chr2.2:47694033-47694052 None:intergenic 55.0%
GGCACAACAAGGTGTACTCG+AGG - chr2.2:47693142-47693161 MS.gene026101:intron 55.0%
GGTCTTGCAGAAGCAGGTCT+AGG + chr2.2:47693931-47693950 None:intergenic 55.0%
TCACGCACACACCCAATACG+AGG + chr2.2:47693859-47693878 None:intergenic 55.0%
TCTTCCAGCAGCTGTGGTTG+CGG + chr2.2:47693117-47693136 None:intergenic 55.0%
TGCAAGTGGTCTACTGGAGC+TGG - chr2.2:47693832-47693851 MS.gene026101:CDS 55.0%
TGTCAAGGTGGGGAAGAGCA+AGG - chr2.2:47692137-47692156 MS.gene026101:intron 55.0%
!! TTAGGGCTTGGCCTTGGAGA+AGG + chr2.2:47693973-47693992 None:intergenic 55.0%
! TGGCGTTGAAGGGTAGCCCT+TGG + chr2.2:47692713-47692732 None:intergenic 60.0%
GGGGCCGCAACCACAGCTGC+TGG - chr2.2:47693110-47693129 MS.gene026101:intron 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 47691321 47694059 47691321 ID=MS.gene026101
chr2.2 mRNA 47691321 47694059 47691321 ID=MS.gene026101.t1;Parent=MS.gene026101
chr2.2 exon 47693665 47694059 47693665 ID=MS.gene026101.t1.exon1;Parent=MS.gene026101.t1
chr2.2 CDS 47693665 47694059 47693665 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47693206 47693320 47693206 ID=MS.gene026101.t1.exon2;Parent=MS.gene026101.t1
chr2.2 CDS 47693206 47693320 47693206 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47693033 47693098 47693033 ID=MS.gene026101.t1.exon3;Parent=MS.gene026101.t1
chr2.2 CDS 47693033 47693098 47693033 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47692827 47692915 47692827 ID=MS.gene026101.t1.exon4;Parent=MS.gene026101.t1
chr2.2 CDS 47692827 47692915 47692827 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47692626 47692713 47692626 ID=MS.gene026101.t1.exon5;Parent=MS.gene026101.t1
chr2.2 CDS 47692626 47692713 47692626 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47692217 47692447 47692217 ID=MS.gene026101.t1.exon6;Parent=MS.gene026101.t1
chr2.2 CDS 47692217 47692447 47692217 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47691853 47691954 47691853 ID=MS.gene026101.t1.exon7;Parent=MS.gene026101.t1
chr2.2 CDS 47691853 47691954 47691853 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
chr2.2 exon 47691321 47691761 47691321 ID=MS.gene026101.t1.exon8;Parent=MS.gene026101.t1
chr2.2 CDS 47691321 47691761 47691321 ID=cds.MS.gene026101.t1;Parent=MS.gene026101.t1
Gene Sequence

>MS.gene026101

ATGGGATTATCACTTTCTTTACTATCATCAGCTTGGGAAGAAATTGTTAGGCATTCACTCTTTGGTCTTACATTCAACTATAGTTTTGGTTCCAAAGATGGTGCTATGATTTTGAGAACAAGTTTCAACAAAAGAGAATCAGAAACTCCAACAACAAAAAGTTCAACTAGGTTAGAGGATTATAGACCAGAACATGTTACCCTTGACACAAATGTTGATGAAAACTTGAAACATAAGGCAGTGCCTTTGCTTTCTTTGCCTAAAGAAGTTGTTTTCTCTTCTCCAAAACCTGTTTTTGAGCTTGATGCTGCAGCAACTAAGGTTCAGAAAGTTTATAAGAGTTATAGAACTAGAAGAAATCTTGCTGATTGTGCTGTTGTTGTTGAGGAACTATGGTTAGTCTTGTTCTAAAAACAATCTTTTTTATTTTGTGATATTTGATTAAATTCATAGTCAATTTAGTCATTGAAATTATACGAATTTTGATAATTTTGGTCGTTGAATTCAACAATATTTTGAAAACGATTCATGAAATTGAAAATTTTCAATCGTCAATTTAGTCTTTAATATTGTCCCGGAAAACTTGTGATAGAAAATTTTCAATTTTTTGTAATGATTTTGAAATTTGCTTAATTTCAAGATTATAATTTGAGAGAGTAAATTGGTGTAGAGTATTAACTTCTTCTTAGCTTATGTTTTTTGTATGTTATTAAATGGATGGTTTTTAAATGATATGAAGGTGGAAAGCATTGGATTTTGCTGCTCTTAGAAGAAGTTCTGTTTCATTTTTTGATGAACATAAACAAGAAACTGCAGTGTCAAGGTGGGGAAGAGCAAGGACTAGAGCAGCTAAGGTATATTCCATTTCAAATTCAATTTAATTTCTAGAATTAAACTAAATTTATTCATATTTGTTATTTCATTTTTAAGGTACCTTTGCTAATTTTTATTTTTCATACAGGTTGGAAAAGGTCTGTCCAAGGATGACAAGGCACAAAAATTAGCCCTCCAACATTGGCTTGAAGCTGTAAGTTATTTATCCTAATATAATATTATAAATTAATCAACTGTCACTAAAATAATATAACATAACATATCTAATCTAATCTTATAGTAGTAACAATGATTTTTTTTTCTTCCACAGATTGACCCACGTCATCGCTATGGACACAATTTGCACTTGTATTATGATATTTGGTTTGAGAGCCAAAGTACTCAACCATTTTTCTATTGGTAAGCTTTTTATCCTATAGTACCTAATCATCTATATCTTATTGATTGTAATAATTATATGAAGCTAGTAAAAACTATTGGAGCTGATAATCTTGATGGTAAATTTTTTGTAGGTTGGATGTTGGAGATGGTAAAGAAATTAATCTTGAGAAATGTCCAAGGGCTACCCTTCAACGCCAGTGCATTAAATATCTTGGACCAGTAAGTTATCAGTAGATTATATCACATTTGTAATCAAAATTATAGTAATTTTTTAAGTATATATCGAACTCGGTACCTCAGGGTTTATAATAGTCAGACACATTGCGCATCAACCACATGCATTAGACCCCGATGATAGTATATAATCTAATGTGTATGTTTGATGTTATAATTGCAGAAAGAAAGGGATGAATATGAAGTAATTGTTGAAAAGGGAAAGTTAGTGTATAGAAAAGATGGAAAGTTTGTGGAGACTGATGAAAAGTCCAAATGGATATTTGTTCTTAGCACCACTAGGGCTTTGTATGTTGGAAGGAAACAAAAGGGTGCTTTTCAACACTCTAGCTTTCTATCTGGGGCCGCAACCACAGCTGCTGGAAGATTAGTGGCACAACAAGGTGTACTCGAGGTAAAAACGCGTAACCATTTTTTTAATTGACCTGAATTCGTTGAAGTTGTAAATCTTAACCGTTGGATGACAATCAGATGATTTGTATTTTTGACTTGTATTTTAAGTCAGACTTAACAACATAAATACACAAATTGTCCGACCTTTATCTGACGGTCAAGATTCAGAACTATTCCATGTGTTTTCATTATATTACATAGATATATAATTTTGCATAAGCAAATTTTGCTTACAAATAGTGTTTATTGTATAAATTTTGCAGGCTATTTGGCCTTATAGTGGTCATTATCACCCAACTGAAGAGAACTTCAGAGAATTTGTTAGCTTTCTTGAGGAGCACAAAGTGGACCTCTCTAATGTCAAGGTGAATTTTTATCTAACGAATACTAGTGAACAAAAAAGTAAATTGGATGTTGAATAAATTATCTTACTTGCTTTTTTTACCCTCTTTTCAGAGATATGCTATAGATGATGATGCACCTTCATTCATTGGGACCAATCCATTTATTGAAACTAATGAATCACAACAAACTATGGACCCTACTCAAACTTCTCAATCAATATCTACCAATAATGCGAGCAACAAAGGAATCAAAATTAATAATGCAACAGAGGTTAATGCCAAGAAATTTGAGGTCCCAGCATTTGACTTTTCCAAGAGATTATCATGCAAGTGGTCTACTGGAGCTGGACCTCGTATTGGGTGTGTGCGTGACTATCCTGAACACCTTCAATCAAGGGCATTGGAGCAAGTTAGTTTGTCACCTAGACCTGCTTCTGCAAGACCATATAGCTATGGCCCAATACCTTCTCCAAGGCCAAGCCCTAAAGTTAGGATTTCTCCTAGGCTTGCATACATGGGGCTACCTAGCCCAAGAACCCCAATTGCTGTTTGA
Protein sequence

>MS.gene026101.t1

MGLSLSLLSSAWEEIVRHSLFGLTFNYSFGSKDGAMILRTSFNKRESETPTTKSSTRLEDYRPEHVTLDTNVDENLKHKAVPLLSLPKEVVFSSPKPVFELDAAATKVQKVYKSYRTRRNLADCAVVVEELWWKALDFAALRRSSVSFFDEHKQETAVSRWGRARTRAAKVGKGLSKDDKAQKLALQHWLEAIDPRHRYGHNLHLYYDIWFESQSTQPFFYWLDVGDGKEINLEKCPRATLQRQCIKYLGPKERDEYEVIVEKGKLVYRKDGKFVETDEKSKWIFVLSTTRALYVGRKQKGAFQHSSFLSGAATTAAGRLVAQQGVLEAIWPYSGHYHPTEENFREFVSFLEEHKVDLSNVKRYAIDDDAPSFIGTNPFIETNESQQTMDPTQTSQSISTNNASNKGIKINNATEVNAKKFEVPAFDFSKRLSCKWSTGAGPRIGCVRDYPEHLQSRALEQVSLSPRPASARPYSYGPIPSPRPSPKVRISPRLAYMGLPSPRTPIAV