Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051854.t1 | XP_013458471.1 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 3.30E-263 | 917.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051854.t1 | O64851 | 67.1 | 414 | 130 | 4 | 60 | 470 | 117 | 527 | 1.2e-152 | 541.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051854.t1 | A0A072US72 | 96.6 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 2.3e-263 | 917.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051854 | MS.gene053003 | 0.812425 | 4.27E-51 | -1.69E-46 |
| MS.gene051854 | MS.gene067477 | 0.809363 | 1.96E-50 | -1.69E-46 |
| MS.gene051854 | MS.gene26489 | 0.815467 | 9.11E-52 | -1.69E-46 |
| MS.gene051854 | MS.gene57574 | 0.94535 | 3.60E-104 | -1.69E-46 |
| MS.gene051854 | MS.gene64870 | 0.819561 | 1.09E-52 | -1.69E-46 |
| MS.gene051854 | MS.gene65315 | 0.8122 | 4.78E-51 | -1.69E-46 |
| MS.gene051854 | MS.gene86565 | 0.800921 | 1.15E-48 | -1.69E-46 |
| MS.gene051854 | MS.gene90362 | 0.808951 | 2.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051854 | MS.gene025134 | PPI |
| MS.gene84687 | MS.gene051854 | PPI |
| MS.gene57574 | MS.gene051854 | PPI |
| MS.gene012267 | MS.gene051854 | PPI |
| MS.gene026101 | MS.gene051854 | PPI |
| MS.gene051854 | MS.gene85613 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051854.t1 | MTR_4g126020 | 96.646 | 477 | 12 | 2 | 1 | 477 | 1 | 473 | 0.0 | 954 |
| MS.gene051854.t1 | MTR_2g039910 | 74.624 | 465 | 91 | 4 | 21 | 473 | 57 | 506 | 0.0 | 707 |
| MS.gene051854.t1 | MTR_4g126020 | 97.361 | 341 | 8 | 1 | 1 | 341 | 1 | 340 | 0.0 | 692 |
| MS.gene051854.t1 | MTR_8g017580 | 64.403 | 427 | 145 | 3 | 52 | 477 | 84 | 504 | 0.0 | 559 |
| MS.gene051854.t1 | MTR_2g099790 | 56.618 | 408 | 148 | 6 | 65 | 466 | 80 | 464 | 1.03e-152 | 443 |
| MS.gene051854.t1 | MTR_2g099790 | 55.663 | 415 | 148 | 7 | 65 | 466 | 80 | 471 | 4.56e-150 | 436 |
| MS.gene051854.t1 | MTR_8g085900 | 64.688 | 320 | 99 | 5 | 37 | 347 | 84 | 398 | 1.64e-143 | 426 |
| MS.gene051854.t1 | MTR_8g085900 | 44.706 | 85 | 34 | 3 | 360 | 434 | 513 | 594 | 2.06e-12 | 69.7 |
| MS.gene051854.t1 | MTR_3g083570 | 68.459 | 279 | 80 | 3 | 86 | 357 | 6 | 283 | 1.39e-139 | 402 |
| MS.gene051854.t1 | MTR_3g083570 | 71.815 | 259 | 69 | 2 | 86 | 341 | 6 | 263 | 9.30e-138 | 397 |
| MS.gene051854.t1 | MTR_1g054735 | 69.708 | 274 | 82 | 1 | 75 | 348 | 67 | 339 | 5.88e-136 | 404 |
| MS.gene051854.t1 | MTR_1g054735 | 47.059 | 85 | 36 | 3 | 384 | 468 | 488 | 563 | 9.55e-13 | 70.9 |
| MS.gene051854.t1 | MTR_8g017580 | 71.648 | 261 | 72 | 2 | 52 | 312 | 84 | 342 | 1.81e-133 | 390 |
| MS.gene051854.t1 | MTR_2g099790 | 61.613 | 310 | 115 | 4 | 65 | 371 | 80 | 388 | 1.10e-132 | 391 |
| MS.gene051854.t1 | MTR_1g060590 | 47.964 | 442 | 173 | 8 | 65 | 452 | 46 | 484 | 4.34e-125 | 374 |
| MS.gene051854.t1 | MTR_3g083570 | 69.912 | 226 | 64 | 2 | 86 | 308 | 6 | 230 | 2.96e-114 | 336 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051854.t1 | AT4G33050 | 69.830 | 411 | 111 | 3 | 60 | 470 | 87 | 484 | 0.0 | 582 |
| MS.gene051854.t1 | AT4G33050 | 69.830 | 411 | 111 | 3 | 60 | 470 | 159 | 556 | 0.0 | 580 |
| MS.gene051854.t1 | AT4G33050 | 63.920 | 449 | 111 | 4 | 60 | 470 | 87 | 522 | 0.0 | 563 |
| MS.gene051854.t1 | AT5G57010 | 58.144 | 485 | 159 | 8 | 3 | 471 | 39 | 495 | 0.0 | 546 |
| MS.gene051854.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 545 |
| MS.gene051854.t1 | AT2G26190 | 69.136 | 405 | 119 | 5 | 69 | 470 | 126 | 527 | 0.0 | 545 |
| MS.gene051854.t1 | AT2G26190 | 80.220 | 273 | 53 | 1 | 69 | 341 | 126 | 397 | 4.68e-160 | 460 |
| MS.gene051854.t1 | AT3G13600 | 62.500 | 328 | 111 | 4 | 30 | 352 | 62 | 382 | 1.83e-142 | 422 |
| MS.gene051854.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.11e-15 | 80.1 |
| MS.gene051854.t1 | AT3G13600 | 62.500 | 328 | 111 | 4 | 30 | 352 | 62 | 382 | 1.83e-142 | 422 |
| MS.gene051854.t1 | AT3G13600 | 51.807 | 83 | 35 | 2 | 387 | 468 | 520 | 598 | 1.11e-15 | 80.1 |
| MS.gene051854.t1 | AT4G33050 | 77.200 | 250 | 56 | 1 | 60 | 309 | 87 | 335 | 4.96e-138 | 400 |
| MS.gene051854.t1 | AT3G58480 | 70.000 | 270 | 77 | 2 | 82 | 348 | 98 | 366 | 1.65e-135 | 403 |
| MS.gene051854.t1 | AT3G58480 | 38.889 | 90 | 40 | 2 | 372 | 446 | 467 | 556 | 1.43e-12 | 70.1 |
| MS.gene051854.t1 | AT3G52870 | 48.157 | 407 | 168 | 6 | 82 | 446 | 49 | 454 | 1.33e-130 | 386 |
| MS.gene051854.t1 | AT4G33050 | 67.014 | 288 | 56 | 2 | 60 | 309 | 87 | 373 | 1.97e-130 | 383 |
| MS.gene051854.t1 | AT4G33050 | 81.287 | 171 | 31 | 1 | 60 | 230 | 87 | 256 | 5.05e-97 | 293 |
Find 88 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAACTTGCAGTTGAAAT+TGG | 0.107738 | 8.2:-6547494 | None:intergenic |
| TGAAGTACTCATCTTATTAT+TGG | 0.159172 | 8.2:-6545311 | None:intergenic |
| AAAGAATTTATAAGCTTTCT+TGG | 0.184873 | 8.2:+6546945 | MS.gene051854:CDS |
| CTAGGTGACATTCTAACTTT+TGG | 0.235750 | 8.2:-6547437 | None:intergenic |
| TTCACATGTATTATGATATC+TGG | 0.237835 | 8.2:+6546045 | MS.gene051854:CDS |
| CAATTTCAACTGCAAGTTAA+AGG | 0.240605 | 8.2:+6547495 | MS.gene051854:CDS |
| CAACGTGACACAGCAGTTTC+AGG | 0.247868 | 8.2:-6545670 | None:intergenic |
| GCAGTTGAAATTGGGTTTCT+TGG | 0.258697 | 8.2:-6547485 | None:intergenic |
| ATGCTTGAATTGATCACTTT+TGG | 0.264241 | 8.2:-6545422 | None:intergenic |
| CGTGACATCAACTCATAAAA+AGG | 0.267494 | 8.2:+6547220 | MS.gene051854:CDS |
| CGTTGTAGAACAGTGCTTCT+TGG | 0.292853 | 8.2:-6546269 | None:intergenic |
| CAACATTCAAGCTTTCTTGC+TGG | 0.301504 | 8.2:+6546567 | MS.gene051854:CDS |
| CGCCAATGTATTAAATATCT+TGG | 0.312762 | 8.2:+6546290 | MS.gene051854:CDS |
| GATGATACTTATTCAATTGT+TGG | 0.363001 | 8.2:+6547119 | MS.gene051854:CDS |
| TGAATAAGTATCATCGTCTA+TGG | 0.363512 | 8.2:-6547111 | None:intergenic |
| ATTGACCCGCGTCATCGATA+TGG | 0.379869 | 8.2:+6546014 | MS.gene051854:CDS |
| GGTTGGAAAAGGTTTATCTA+AGG | 0.388520 | 8.2:+6545830 | MS.gene051854:intron |
| TCTGTTACTGATTTGTCAAA+TGG | 0.389009 | 8.2:+6545286 | MS.gene051854:CDS |
| TTTAACTTGCAGTTGAAATT+GGG | 0.397772 | 8.2:-6547493 | None:intergenic |
| TTGTCTTGCAAGTGGTCAAC+TGG | 0.401784 | 8.2:+6547275 | MS.gene051854:CDS |
| GGCAGAGAAATCACTGGAAC+TGG | 0.405732 | 8.2:-6545448 | None:intergenic |
| ATATGAAGTAATTGTTGAAA+AGG | 0.407093 | 8.2:+6546425 | MS.gene051854:CDS |
| CTTTATCTTGAACAAATGAA+TGG | 0.423444 | 8.2:-6545381 | None:intergenic |
| TGCAAGTGGTCAACTGGAGC+TGG | 0.427085 | 8.2:+6547281 | MS.gene051854:CDS |
| TCTTTGAAGTTCTCTTCTGT+TGG | 0.432145 | 8.2:-6546927 | None:intergenic |
| GTCACCTAGGCTTGTGTACA+TGG | 0.437362 | 8.2:+6547451 | MS.gene051854:CDS |
| ATAATTTGTAGGTTGGATGT+TGG | 0.439407 | 8.2:+6546215 | MS.gene051854:intron |
| TCAAGCTCAGAAACCGGTCT+TGG | 0.450175 | 8.2:-6545493 | None:intergenic |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 8.2:+6546426 | MS.gene051854:CDS |
| TGCTGCAACTACACTTCAAA+AGG | 0.455467 | 8.2:+6545519 | MS.gene051854:CDS |
| AGCAAGAACAAGAGCAGCTA+AGG | 0.455856 | 8.2:+6545699 | MS.gene051854:CDS |
| TGCAGATTGTGCAGTGGTTG+TGG | 0.458589 | 8.2:+6545573 | MS.gene051854:CDS |
| CATTCAAGCTTTCTTGCTGG+TGG | 0.460779 | 8.2:+6546570 | MS.gene051854:CDS |
| GTAGGAACCTTTGTTTGTTG+TGG | 0.471273 | 8.2:-6547170 | None:intergenic |
| TGAAGTTCTCTTCTGTTGGA+TGG | 0.474618 | 8.2:-6546923 | None:intergenic |
| CAGTGGTTGTGGAAGAGTTA+TGG | 0.477590 | 8.2:+6545584 | MS.gene051854:CDS |
| CTAGGCCTAGGAGAAGGAAT+TGG | 0.478665 | 8.2:-6547413 | None:intergenic |
| AGAGTTATGGTGGAAAGCAT+TGG | 0.479204 | 8.2:+6545597 | MS.gene051854:CDS |
| AGGTTTATCTAAGGATGAAA+AGG | 0.485144 | 8.2:+6545839 | MS.gene051854:CDS |
| TTATCATTGACATTGACCTT+AGG | 0.486850 | 8.2:-6547194 | None:intergenic |
| CTGCAAGGTTTCTTCTAGTA+CGG | 0.488174 | 8.2:-6545555 | None:intergenic |
| AATTGTTGAAAAGGGAAGGT+TGG | 0.496058 | 8.2:+6546434 | MS.gene051854:CDS |
| ACTGGAGCTGGTCCACGTAT+TGG | 0.499952 | 8.2:+6547293 | MS.gene051854:CDS |
| CTGTTACTGATTTGTCAAAT+GGG | 0.501575 | 8.2:+6545287 | MS.gene051854:CDS |
| TGAAACTGCTGTGTCACGTT+GGG | 0.503731 | 8.2:+6545672 | MS.gene051854:CDS |
| TTGGTCCAATTCCTTCTCCT+AGG | 0.504331 | 8.2:+6547408 | MS.gene051854:CDS |
| AACAAGTTCATTTGTCTCCA+AGG | 0.506581 | 8.2:+6547360 | MS.gene051854:CDS |
| GCAGCATCAAGCTCAGAAAC+CGG | 0.510721 | 8.2:-6545499 | None:intergenic |
| GTCCAAGATATTTAATACAT+TGG | 0.512159 | 8.2:-6546292 | None:intergenic |
| GTACTGATGAGAAATCAAAA+TGG | 0.515735 | 8.2:+6546484 | MS.gene051854:CDS |
| GGATGGTAGTGTCCACTGTA+TGG | 0.524176 | 8.2:-6546906 | None:intergenic |
| GGTTGGTGTATAAACAAGAT+GGG | 0.536691 | 8.2:+6546451 | MS.gene051854:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.537642 | 8.2:+6546221 | MS.gene051854:intron |
| GAAATTGGGTTTCTTGGACT+AGG | 0.538092 | 8.2:-6547479 | None:intergenic |
| AGGTTGGTGTATAAACAAGA+TGG | 0.542312 | 8.2:+6546450 | MS.gene051854:CDS |
| GGTGGTGCAACCACAGCAGC+TGG | 0.542342 | 8.2:+6546588 | MS.gene051854:CDS |
| CACTGCAAGAGCCTTGTATG+TGG | 0.543226 | 8.2:+6546521 | MS.gene051854:CDS |
| AAGTAATTGTTGAAAAGGGA+AGG | 0.544030 | 8.2:+6546430 | MS.gene051854:CDS |
| AACAAAGGTTCCTACTCCTA+AGG | 0.545400 | 8.2:+6547178 | MS.gene051854:CDS |
| CTTTCAAGAATCATGTGTTG+AGG | 0.549804 | 8.2:-6545355 | None:intergenic |
| TTGCAGCATTTAACGCCTCA+AGG | 0.550558 | 8.2:+6547249 | MS.gene051854:CDS |
| TGTAGACCTCACAAATGTAA+AGG | 0.560440 | 8.2:+6546977 | MS.gene051854:CDS |
| ACACTTGCAGTCAAAAGCAT+TGG | 0.561007 | 8.2:+6547337 | MS.gene051854:CDS |
| TATTTACCTTTACATTTGTG+AGG | 0.561561 | 8.2:-6546983 | None:intergenic |
| CTGCAAGAGCCTTGTATGTG+GGG | 0.574800 | 8.2:+6546523 | MS.gene051854:CDS |
| AATCCCATGTACACAAGCCT+AGG | 0.574805 | 8.2:-6547455 | None:intergenic |
| GGTAGATTAGTAGCAAATCA+AGG | 0.575049 | 8.2:+6546609 | MS.gene051854:CDS |
| TTTGGGCTAGGCCTAGGAGA+AGG | 0.580187 | 8.2:-6547419 | None:intergenic |
| AAGAAAGCTTGAATGTTGAA+AGG | 0.583819 | 8.2:-6546562 | None:intergenic |
| GCTTCAGGCAGAGAAATCAC+TGG | 0.585648 | 8.2:-6545454 | None:intergenic |
| TACTAATCTACCAGCTGCTG+TGG | 0.585907 | 8.2:-6546598 | None:intergenic |
| ACTGCAAGAGCCTTGTATGT+GGG | 0.586114 | 8.2:+6546522 | MS.gene051854:CDS |
| CAATGAACCACAACAAACAA+AGG | 0.595908 | 8.2:+6547163 | MS.gene051854:CDS |
| CTGAAACTGCTGTGTCACGT+TGG | 0.601275 | 8.2:+6545671 | MS.gene051854:CDS |
| TTGACATTGACCTTAGGAGT+AGG | 0.608674 | 8.2:-6547188 | None:intergenic |
| TGGTTGTGGAAGAGTTATGG+TGG | 0.610463 | 8.2:+6545587 | MS.gene051854:CDS |
| ATAAGATGAGTACTTCAAGC+AGG | 0.611847 | 8.2:+6545317 | MS.gene051854:CDS |
| CAACCACTGCACAATCTGCA+AGG | 0.620516 | 8.2:-6545570 | None:intergenic |
| CAAGGAGATTGTCTTGCAAG+TGG | 0.635633 | 8.2:+6547267 | MS.gene051854:CDS |
| AGCAAATCAAGGTGTTCTTG+AGG | 0.643990 | 8.2:+6546620 | MS.gene051854:CDS |
| TCACCTAGGCTTGTGTACAT+GGG | 0.646732 | 8.2:+6547452 | MS.gene051854:CDS |
| CAAAAGTTAGAATGTCACCT+AGG | 0.655633 | 8.2:+6547438 | MS.gene051854:CDS |
| TTGTGTCCATATCGATGACG+CGG | 0.659774 | 8.2:-6546020 | None:intergenic |
| CAGGCTATTTGGCCATACAG+TGG | 0.663221 | 8.2:+6546894 | MS.gene051854:intron |
| TCACGAACACAACCAATACG+TGG | 0.684822 | 8.2:-6547305 | None:intergenic |
| CTTGCAAGACAATCTCCTTG+AGG | 0.686603 | 8.2:-6547264 | None:intergenic |
| TGTGTCCATATCGATGACGC+GGG | 0.693829 | 8.2:-6546019 | None:intergenic |
| AAACCTTGCAGATTGTGCAG+TGG | 0.697065 | 8.2:+6545567 | MS.gene051854:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGATAAATAATTTGT+AGG | + | chr8.2:6546204-6546223 | MS.gene051854:intron | 10.0% |
| !! | ATTTATAGAAAGAGTTTAAT+TGG | - | chr8.2:6546824-6546843 | None:intergenic | 15.0% |
| !! | AAAGAATTTATAAGCTTTCT+TGG | + | chr8.2:6546945-6546964 | MS.gene051854:CDS | 20.0% |
| !! | AAGATAAACAATTATGAGAT+AGG | - | chr8.2:6546372-6546391 | None:intergenic | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | + | chr8.2:6546425-6546444 | MS.gene051854:CDS | 20.0% |
| !! | ATTTCATTAGTACTTTACAT+AGG | - | chr8.2:6547045-6547064 | None:intergenic | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | + | chr8.2:6546426-6546445 | MS.gene051854:CDS | 20.0% |
| !!! | ACTTTTTATAGTTTTTGATC+TGG | + | chr8.2:6545956-6545975 | MS.gene051854:intron | 20.0% |
| !!! | ATGATAAATAATTTGTAGGT+TGG | + | chr8.2:6546208-6546227 | MS.gene051854:intron | 20.0% |
| !!! | TATTTTCAAAGTTATCTATG+TGG | + | chr8.2:6546767-6546786 | MS.gene051854:intron | 20.0% |
| ! | AAAAATTAGCACTTCAACAT+TGG | + | chr8.2:6545865-6545884 | MS.gene051854:CDS | 25.0% |
| ! | ATTAAATCCTTATGAAAAGC+TGG | - | chr8.2:6546666-6546685 | None:intergenic | 25.0% |
| ! | CTTTATCTTGAACAAATGAA+TGG | - | chr8.2:6545384-6545403 | None:intergenic | 25.0% |
| ! | GATGATACTTATTCAATTGT+TGG | + | chr8.2:6547119-6547138 | MS.gene051854:CDS | 25.0% |
| ! | GTCCAAGATATTTAATACAT+TGG | - | chr8.2:6546295-6546314 | None:intergenic | 25.0% |
| ! | TATTTACCTTTACATTTGTG+AGG | - | chr8.2:6546986-6547005 | None:intergenic | 25.0% |
| ! | TTCACATGTATTATGATATC+TGG | + | chr8.2:6546045-6546064 | MS.gene051854:CDS | 25.0% |
| ! | TTGATCCTCAAAATAATTAC+TGG | + | chr8.2:6547007-6547026 | MS.gene051854:intron | 25.0% |
| !! | TATCTACATGATCTCAATTT+TGG | + | chr8.2:6546323-6546342 | MS.gene051854:intron | 25.0% |
| !! | TGAAGTACTCATCTTATTAT+TGG | - | chr8.2:6545314-6545333 | None:intergenic | 25.0% |
| !!! | CTTGTTCATGTTACTTTATA+TGG | + | chr8.2:6545760-6545779 | MS.gene051854:intron | 25.0% |
| !!! | TACTACCAGTAATTATTTTG+AGG | - | chr8.2:6547015-6547034 | None:intergenic | 25.0% |
| !!! | TTTTCAAGACTCAACAAATT+TGG | + | chr8.2:6547389-6547408 | MS.gene051854:CDS | 25.0% |
| AAGAAAGCTTGAATGTTGAA+AGG | - | chr8.2:6546565-6546584 | None:intergenic | 30.0% | |
| AAGTAATTGTTGAAAAGGGA+AGG | + | chr8.2:6546430-6546449 | MS.gene051854:CDS | 30.0% | |
| ACAGATGAAGATTGTAAAAC+AGG | + | chr8.2:6546149-6546168 | MS.gene051854:intron | 30.0% | |
| ACATAAAAATGCAGGCTATT+TGG | + | chr8.2:6546883-6546902 | MS.gene051854:intron | 30.0% | |
| AGAGTTTACCAGTAGAAAAA+TGG | - | chr8.2:6546092-6546111 | None:intergenic | 30.0% | |
| AGATCATGTAGATAACTTAC+TGG | - | chr8.2:6546317-6546336 | None:intergenic | 30.0% | |
| AGGTTTATCTAAGGATGAAA+AGG | + | chr8.2:6545839-6545858 | MS.gene051854:CDS | 30.0% | |
| CGCCAATGTATTAAATATCT+TGG | + | chr8.2:6546290-6546309 | MS.gene051854:CDS | 30.0% | |
| TATCCACTACATAAAAATGC+AGG | + | chr8.2:6546875-6546894 | MS.gene051854:intron | 30.0% | |
| TGAATAAGTATCATCGTCTA+TGG | - | chr8.2:6547114-6547133 | None:intergenic | 30.0% | |
| TTATCATTGACATTGACCTT+AGG | - | chr8.2:6547197-6547216 | None:intergenic | 30.0% | |
| TTGTTGAGTCTTGAAAAACT+TGG | - | chr8.2:6547386-6547405 | None:intergenic | 30.0% | |
| ! | ATAATTTGTAGGTTGGATGT+TGG | + | chr8.2:6546215-6546234 | MS.gene051854:intron | 30.0% |
| ! | ATGCTTGAATTGATCACTTT+TGG | - | chr8.2:6545425-6545444 | None:intergenic | 30.0% |
| ! | GTACTGATGAGAAATCAAAA+TGG | + | chr8.2:6546484-6546503 | MS.gene051854:CDS | 30.0% |
| ! | TAGGTGACATTCTAACTTTT+GGG | - | chr8.2:6547439-6547458 | None:intergenic | 30.0% |
| !! | CTGTTACTGATTTGTCAAAT+GGG | + | chr8.2:6545287-6545306 | MS.gene051854:CDS | 30.0% |
| !! | TCTGTTACTGATTTGTCAAA+TGG | + | chr8.2:6545286-6545305 | MS.gene051854:CDS | 30.0% |
| !!! | AACTCTTTTTTTGCAAAGGT+TGG | + | chr8.2:6545813-6545832 | MS.gene051854:intron | 30.0% |
| !!! | GTGTAACTCTTTTTTTGCAA+AGG | + | chr8.2:6545809-6545828 | MS.gene051854:intron | 30.0% |
| !!! | TTTTTTGCAAAGGTTGGAAA+AGG | + | chr8.2:6545819-6545838 | MS.gene051854:intron | 30.0% |
| AACAAGTTCATTTGTCTCCA+AGG | + | chr8.2:6547360-6547379 | MS.gene051854:CDS | 35.0% | |
| AATTGTTGAAAAGGGAAGGT+TGG | + | chr8.2:6546434-6546453 | MS.gene051854:CDS | 35.0% | |
| ATAAGATGAGTACTTCAAGC+AGG | + | chr8.2:6545317-6545336 | MS.gene051854:CDS | 35.0% | |
| CAAAAGTTAGAATGTCACCT+AGG | + | chr8.2:6547438-6547457 | MS.gene051854:CDS | 35.0% | |
| CAATGAACCACAACAAACAA+AGG | + | chr8.2:6547163-6547182 | MS.gene051854:CDS | 35.0% | |
| CGTGACATCAACTCATAAAA+AGG | + | chr8.2:6547220-6547239 | MS.gene051854:CDS | 35.0% | |
| CTTTCAAGAATCATGTGTTG+AGG | - | chr8.2:6545358-6545377 | None:intergenic | 35.0% | |
| GAAGAAAAAACAACTGCTTC+AGG | - | chr8.2:6545472-6545491 | None:intergenic | 35.0% | |
| GGTAGATTAGTAGCAAATCA+AGG | + | chr8.2:6546609-6546628 | MS.gene051854:CDS | 35.0% | |
| GGTTGGAAAAGGTTTATCTA+AGG | + | chr8.2:6545830-6545849 | MS.gene051854:intron | 35.0% | |
| TATGTGGGGAAAAAGCAAAA+GGG | + | chr8.2:6546537-6546556 | MS.gene051854:CDS | 35.0% | |
| TGTAGACCTCACAAATGTAA+AGG | + | chr8.2:6546977-6546996 | MS.gene051854:CDS | 35.0% | |
| ! | AGGAGCTAAAGTGTTCTATA+TGG | + | chr8.2:6546169-6546188 | MS.gene051854:intron | 35.0% |
| ! | CTAGGTGACATTCTAACTTT+TGG | - | chr8.2:6547440-6547459 | None:intergenic | 35.0% |
| ! | GGTTGGTGTATAAACAAGAT+GGG | + | chr8.2:6546451-6546470 | MS.gene051854:CDS | 35.0% |
| ! | TAGCCTGCATTTTTATGTAG+TGG | - | chr8.2:6546881-6546900 | None:intergenic | 35.0% |
| !! | AGGTTGGTGTATAAACAAGA+TGG | + | chr8.2:6546450-6546469 | MS.gene051854:CDS | 35.0% |
| !! | GTTCACAACCATTTTTCTAC+TGG | + | chr8.2:6546081-6546100 | MS.gene051854:CDS | 35.0% |
| !! | TCTTTGAAGTTCTCTTCTGT+TGG | - | chr8.2:6546930-6546949 | None:intergenic | 35.0% |
| !!! | TGTTTTTTCTTCTCCAAGAC+CGG | + | chr8.2:6545480-6545499 | MS.gene051854:CDS | 35.0% |
| AACAAAGGTTCCTACTCCTA+AGG | + | chr8.2:6547178-6547197 | MS.gene051854:CDS | 40.0% | |
| AGTCTTGAAAAACTTGGCCT+TGG | - | chr8.2:6547380-6547399 | None:intergenic | 40.0% | |
| ATCCTTATGAAAAGCTGGAG+TGG | - | chr8.2:6546661-6546680 | None:intergenic | 40.0% | |
| CAACATTCAAGCTTTCTTGC+TGG | + | chr8.2:6546567-6546586 | MS.gene051854:CDS | 40.0% | |
| CTGCAAGGTTTCTTCTAGTA+CGG | - | chr8.2:6545558-6545577 | None:intergenic | 40.0% | |
| GAAATTGGGTTTCTTGGACT+AGG | - | chr8.2:6547482-6547501 | None:intergenic | 40.0% | |
| GCAGTTGAAATTGGGTTTCT+TGG | - | chr8.2:6547488-6547507 | None:intergenic | 40.0% | |
| GTATGTGGGGAAAAAGCAAA+AGG | + | chr8.2:6546536-6546555 | MS.gene051854:CDS | 40.0% | |
| TGAAAAGCTGGAGTGGAATT+TGG | - | chr8.2:6546654-6546673 | None:intergenic | 40.0% | |
| TGAAGTTCTCTTCTGTTGGA+TGG | - | chr8.2:6546926-6546945 | None:intergenic | 40.0% | |
| TGCTGCAACTACACTTCAAA+AGG | + | chr8.2:6545519-6545538 | MS.gene051854:CDS | 40.0% | |
| TTGACATTGACCTTAGGAGT+AGG | - | chr8.2:6547191-6547210 | None:intergenic | 40.0% | |
| ! | ACACTTGCAGTCAAAAGCAT+TGG | + | chr8.2:6547337-6547356 | MS.gene051854:CDS | 40.0% |
| ! | AGAGTTATGGTGGAAAGCAT+TGG | + | chr8.2:6545597-6545616 | MS.gene051854:CDS | 40.0% |
| ! | AGCAAATCAAGGTGTTCTTG+AGG | + | chr8.2:6546620-6546639 | MS.gene051854:CDS | 40.0% |
| ! | GACATTCTAACTTTTGGGCT+AGG | - | chr8.2:6547434-6547453 | None:intergenic | 40.0% |
| ! | GTAGGAACCTTTGTTTGTTG+TGG | - | chr8.2:6547173-6547192 | None:intergenic | 40.0% |
| ! | TTCCACTCCAGCTTTTCATA+AGG | + | chr8.2:6546656-6546675 | MS.gene051854:intron | 40.0% |
| !!! | TTGCTTTTTCCCCACATACA+AGG | - | chr8.2:6546535-6546554 | None:intergenic | 40.0% |
| AAACCTTGCAGATTGTGCAG+TGG | + | chr8.2:6545567-6545586 | MS.gene051854:CDS | 45.0% | |
| AATCCCATGTACACAAGCCT+AGG | - | chr8.2:6547458-6547477 | None:intergenic | 45.0% | |
| AGCAAGAACAAGAGCAGCTA+AGG | + | chr8.2:6545699-6545718 | MS.gene051854:CDS | 45.0% | |
| CAAGGAGATTGTCTTGCAAG+TGG | + | chr8.2:6547267-6547286 | MS.gene051854:CDS | 45.0% | |
| CAGTGGTTGTGGAAGAGTTA+TGG | + | chr8.2:6545584-6545603 | MS.gene051854:CDS | 45.0% | |
| CATTCAAGCTTTCTTGCTGG+TGG | + | chr8.2:6546570-6546589 | MS.gene051854:CDS | 45.0% | |
| CGTTGTAGAACAGTGCTTCT+TGG | - | chr8.2:6546272-6546291 | None:intergenic | 45.0% | |
| CTTGCAAGACAATCTCCTTG+AGG | - | chr8.2:6547267-6547286 | None:intergenic | 45.0% | |
| TACTAATCTACCAGCTGCTG+TGG | - | chr8.2:6546601-6546620 | None:intergenic | 45.0% | |
| TCACCTAGGCTTGTGTACAT+GGG | + | chr8.2:6547452-6547471 | MS.gene051854:CDS | 45.0% | |
| TCACGAACACAACCAATACG+TGG | - | chr8.2:6547308-6547327 | None:intergenic | 45.0% | |
| TGAAACTGCTGTGTCACGTT+GGG | + | chr8.2:6545672-6545691 | MS.gene051854:CDS | 45.0% | |
| TGGTTGTGGAAGAGTTATGG+TGG | + | chr8.2:6545587-6545606 | MS.gene051854:CDS | 45.0% | |
| TTGCAGCATTTAACGCCTCA+AGG | + | chr8.2:6547249-6547268 | MS.gene051854:CDS | 45.0% | |
| TTGGTCCAATTCCTTCTCCT+AGG | + | chr8.2:6547408-6547427 | MS.gene051854:CDS | 45.0% | |
| TTGTCTTGCAAGTGGTCAAC+TGG | + | chr8.2:6547275-6547294 | MS.gene051854:CDS | 45.0% | |
| TTGTGTCCATATCGATGACG+CGG | - | chr8.2:6546023-6546042 | None:intergenic | 45.0% | |
| ! | ACTGCAAGAGCCTTGTATGT+GGG | + | chr8.2:6546522-6546541 | MS.gene051854:CDS | 45.0% |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | + | chr8.2:6546221-6546240 | MS.gene051854:intron | 45.0% |
| !! | GCTTTTGACTGCAAGTGTTC+AGG | - | chr8.2:6547335-6547354 | None:intergenic | 45.0% |
| ATTGACCCGCGTCATCGATA+TGG | + | chr8.2:6546014-6546033 | MS.gene051854:CDS | 50.0% | |
| CAACCACTGCACAATCTGCA+AGG | - | chr8.2:6545573-6545592 | None:intergenic | 50.0% | |
| CAACGTGACACAGCAGTTTC+AGG | - | chr8.2:6545673-6545692 | None:intergenic | 50.0% | |
| CAGGCTATTTGGCCATACAG+TGG | + | chr8.2:6546894-6546913 | MS.gene051854:intron | 50.0% | |
| CATCGTCTATGGCACATCTC+TGG | - | chr8.2:6547103-6547122 | None:intergenic | 50.0% | |
| CTAGGCCTAGGAGAAGGAAT+TGG | - | chr8.2:6547416-6547435 | None:intergenic | 50.0% | |
| CTGAAACTGCTGTGTCACGT+TGG | + | chr8.2:6545671-6545690 | MS.gene051854:CDS | 50.0% | |
| GCAGCATCAAGCTCAGAAAC+CGG | - | chr8.2:6545502-6545521 | None:intergenic | 50.0% | |
| GCTTCAGGCAGAGAAATCAC+TGG | - | chr8.2:6545457-6545476 | None:intergenic | 50.0% | |
| GGCAGAGAAATCACTGGAAC+TGG | - | chr8.2:6545451-6545470 | None:intergenic | 50.0% | |
| GTCACCTAGGCTTGTGTACA+TGG | + | chr8.2:6547451-6547470 | MS.gene051854:CDS | 50.0% | |
| TCAAGCTCAGAAACCGGTCT+TGG | - | chr8.2:6545496-6545515 | None:intergenic | 50.0% | |
| TGCAGATTGTGCAGTGGTTG+TGG | + | chr8.2:6545573-6545592 | MS.gene051854:CDS | 50.0% | |
| TGTGTCCATATCGATGACGC+GGG | - | chr8.2:6546022-6546041 | None:intergenic | 50.0% | |
| ! | CACTGCAAGAGCCTTGTATG+TGG | + | chr8.2:6546521-6546540 | MS.gene051854:CDS | 50.0% |
| ! | CTGCAAGAGCCTTGTATGTG+GGG | + | chr8.2:6546523-6546542 | MS.gene051854:CDS | 50.0% |
| ! | GGATGGTAGTGTCCACTGTA+TGG | - | chr8.2:6546909-6546928 | None:intergenic | 50.0% |
| !! | CTAACTTTTGGGCTAGGCCT+AGG | - | chr8.2:6547428-6547447 | None:intergenic | 50.0% |
| ACTGGAGCTGGTCCACGTAT+TGG | + | chr8.2:6547293-6547312 | MS.gene051854:CDS | 55.0% | |
| TGCAAGTGGTCAACTGGAGC+TGG | + | chr8.2:6547281-6547300 | MS.gene051854:CDS | 55.0% | |
| ! | TTTGGGCTAGGCCTAGGAGA+AGG | - | chr8.2:6547422-6547441 | None:intergenic | 55.0% |
| GGTGGTGCAACCACAGCAGC+TGG | + | chr8.2:6546588-6546607 | MS.gene051854:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 6545277 | 6547514 | 6545277 | ID=MS.gene051854 |
| chr8.2 | mRNA | 6545277 | 6547514 | 6545277 | ID=MS.gene051854.t1;Parent=MS.gene051854 |
| chr8.2 | exon | 6545277 | 6545720 | 6545277 | ID=MS.gene051854.t1.exon1;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6545277 | 6545720 | 6545277 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6545831 | 6545896 | 6545831 | ID=MS.gene051854.t1.exon2;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6545831 | 6545896 | 6545831 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6546014 | 6546102 | 6546014 | ID=MS.gene051854.t1.exon3;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6546014 | 6546102 | 6546014 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6546226 | 6546316 | 6546226 | ID=MS.gene051854.t1.exon4;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6546226 | 6546316 | 6546226 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6546411 | 6546641 | 6546411 | ID=MS.gene051854.t1.exon5;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6546411 | 6546641 | 6546411 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6546897 | 6546998 | 6546897 | ID=MS.gene051854.t1.exon6;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6546897 | 6546998 | 6546897 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| chr8.2 | exon | 6547104 | 6547514 | 6547104 | ID=MS.gene051854.t1.exon7;Parent=MS.gene051854.t1 |
| chr8.2 | CDS | 6547104 | 6547514 | 6547104 | ID=cds.MS.gene051854.t1;Parent=MS.gene051854.t1 |
| Gene Sequence |
| Protein sequence |
