AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012430.t1 MTR_4g128930 97.074 376 10 1 1 376 1 375 0.0 754
MS.gene012430.t1 MTR_1g013450 47.075 359 140 8 20 375 4 315 1.35e-99 298
MS.gene012430.t1 MTR_3g105710 49.444 360 104 11 20 375 4 289 4.85e-89 270
MS.gene012430.t1 MTR_7g018170 64.835 91 32 0 20 110 24 114 6.50e-39 143
MS.gene012430.t1 MTR_3g034680 79.487 78 16 0 67 144 12 89 1.10e-37 131
MS.gene012430.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 2.10e-20 88.6
MS.gene012430.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 2.41e-20 90.1
MS.gene012430.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 1.36e-18 87.0
MS.gene012430.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 1.61e-18 85.5
MS.gene012430.t1 MTR_7g108150 28.049 164 99 3 22 185 20 164 1.06e-16 81.3
MS.gene012430.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.43e-16 79.0
MS.gene012430.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.55e-16 78.6
MS.gene012430.t1 MTR_3g117320 32.331 133 73 2 22 137 5 137 2.29e-16 77.8
MS.gene012430.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 3.74e-16 76.6
MS.gene012430.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 4.39e-16 76.3
MS.gene012430.t1 MTR_4g071200 40.860 93 45 1 22 104 5 97 4.42e-16 77.0
MS.gene012430.t1 MTR_3g082630 38.889 90 54 1 21 110 4 92 6.67e-15 75.9
MS.gene012430.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 6.89e-15 73.9
MS.gene012430.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 7.26e-15 73.9
MS.gene012430.t1 MTR_2g073370 38.043 92 48 1 22 104 5 96 2.52e-14 73.2
MS.gene012430.t1 MTR_3g113070 36.170 94 49 1 22 104 5 98 1.06e-13 70.1
MS.gene012430.t1 MTR_8g104190 54.795 73 31 1 270 342 331 401 1.89e-13 71.6
MS.gene012430.t1 MTR_2g088900 39.024 82 50 0 21 102 100 181 1.00e-12 69.7
MS.gene012430.t1 MTR_7g083540 40.541 74 44 0 22 95 5 78 9.66e-12 66.2
MS.gene012430.t1 MTR_5g072780 53.226 62 26 1 283 341 155 216 1.55e-11 63.9
MS.gene012430.t1 MTR_1g110870 48.052 77 29 2 265 341 359 424 1.92e-11 65.5
MS.gene012430.t1 MTR_2g096080 43.548 62 32 1 287 345 140 201 3.47e-11 63.2
MS.gene012430.t1 MTR_1g109350 34.146 82 54 0 20 101 3 84 7.32e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012430.t1 AT5G57660 53.125 384 143 10 1 376 1 355 2.50e-117 345
MS.gene012430.t1 AT5G24930 48.718 390 136 13 20 376 4 362 8.97e-97 293
MS.gene012430.t1 AT2G24790 50.915 328 97 13 20 343 6 273 1.56e-91 277
MS.gene012430.t1 AT3G02380 40.270 370 172 13 20 376 14 347 4.63e-79 246
MS.gene012430.t1 AT5G15850 39.683 378 186 8 13 376 6 355 5.35e-76 239
MS.gene012430.t1 AT5G15840 38.032 376 208 12 13 376 11 373 6.68e-76 239
MS.gene012430.t1 AT2G24790 48.276 232 78 10 20 248 6 198 5.00e-56 183
MS.gene012430.t1 AT5G15840 34.211 228 139 6 13 229 11 238 1.70e-39 142
MS.gene012430.t1 AT3G21880 27.298 359 217 11 16 340 4 352 1.87e-23 100
MS.gene012430.t1 AT3G21880 27.298 359 217 11 16 340 4 352 1.87e-23 100
MS.gene012430.t1 AT3G21880 26.912 353 215 10 22 340 5 348 3.98e-23 99.8
MS.gene012430.t1 AT1G49130 25.439 342 192 10 19 342 18 314 8.34e-20 89.4
MS.gene012430.t1 AT1G49130 25.439 342 192 10 19 342 25 321 9.75e-20 89.4
MS.gene012430.t1 AT2G33500 44.944 89 49 0 22 110 12 100 4.01e-18 85.5
MS.gene012430.t1 AT2G33500 44.944 89 49 0 22 110 12 100 4.02e-18 85.5
MS.gene012430.t1 AT1G28050 43.820 89 50 0 22 110 9 97 3.71e-17 82.8
MS.gene012430.t1 AT2G21320 40.449 89 45 1 21 101 4 92 1.71e-16 77.0
MS.gene012430.t1 AT1G75540 36.434 129 68 2 22 136 5 133 1.73e-16 80.1
MS.gene012430.t1 AT4G38960 43.210 81 38 1 21 93 4 84 5.37e-16 75.9
MS.gene012430.t1 AT4G38960 43.210 81 38 1 21 93 4 84 5.37e-16 75.9
MS.gene012430.t1 AT1G06040 40.217 92 46 1 22 104 5 96 5.95e-16 77.4
MS.gene012430.t1 AT2G47890 38.462 91 54 1 20 110 11 99 6.00e-16 77.0
MS.gene012430.t1 AT2G47890 38.462 91 54 1 20 110 11 99 6.99e-16 77.8
MS.gene012430.t1 AT2G47890 38.462 91 54 1 20 110 11 99 8.06e-16 78.2
MS.gene012430.t1 AT1G06040 40.217 92 46 1 22 104 5 96 1.04e-15 75.1
MS.gene012430.t1 AT4G15250 33.544 158 90 5 22 175 5 151 1.65e-15 77.0
MS.gene012430.t1 AT5G48250 46.575 73 39 0 21 93 4 76 1.97e-15 77.4
MS.gene012430.t1 AT3G07650 45.205 73 40 0 21 93 4 76 3.67e-15 76.6
MS.gene012430.t1 AT3G07650 45.205 73 40 0 21 93 4 76 3.67e-15 76.6
MS.gene012430.t1 AT3G07650 45.205 73 40 0 21 93 4 76 3.67e-15 76.6
MS.gene012430.t1 AT3G07650 45.205 73 40 0 21 93 4 76 3.67e-15 76.6
MS.gene012430.t1 AT2G31380 36.036 111 57 2 22 123 5 110 6.07e-15 74.3
MS.gene012430.t1 AT1G78600 38.043 92 48 1 22 104 5 96 1.87e-14 73.6
MS.gene012430.t1 AT1G78600 35.238 105 59 1 22 117 5 109 2.25e-14 73.6
MS.gene012430.t1 AT1G73870 52.000 75 31 2 272 344 319 390 1.43e-13 72.0
MS.gene012430.t1 AT1G68190 36.585 82 52 0 20 101 41 122 2.89e-12 67.8
MS.gene012430.t1 AT1G68190 36.585 82 52 0 20 101 12 93 3.03e-12 67.8
MS.gene012430.t1 AT1G68190 36.585 82 52 0 20 101 12 93 3.03e-12 67.8
MS.gene012430.t1 AT4G39070 32.500 120 71 1 22 131 5 124 9.88e-12 64.7
MS.gene012430.t1 AT1G68520 67.391 46 15 0 299 344 357 402 1.66e-11 65.9
MS.gene012430.t1 AT4G10240 28.767 146 82 3 22 149 5 146 3.47e-11 61.6
MS.gene012430.t1 AT1G25440 69.767 43 13 0 299 341 361 403 5.79e-11 63.9

Find 86 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCGGAATCGATGGTTTC+AGG 0.197771 8.3:-2630918 MS.gene012430:CDS
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8.3:+2630738 None:intergenic
TCAGAGATATCATACAATTT+TGG 0.229801 8.3:-2630939 MS.gene012430:CDS
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8.3:+2631351 None:intergenic
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8.3:+2631338 None:intergenic
GTCCACATCCGAGTCAATTT+CGG 0.307960 8.3:+2630707 None:intergenic
TGCTGCAGTTATTGTTGTTC+TGG 0.308773 8.3:+2631247 None:intergenic
GGAATGTGATGGATAGTTAA+AGG 0.317309 8.3:+2631110 None:intergenic
ATTACTTACGCTATGGCTAA+TGG 0.327776 8.3:+2631089 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8.3:-2631304 MS.gene012430:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8.3:-2630747 MS.gene012430:CDS
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8.3:-2631650 MS.gene012430:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8.3:+2631458 None:intergenic
CTGATTCCGAATCCTAATTT+CGG 0.371287 8.3:-2631363 MS.gene012430:CDS
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8.3:+2630724 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8.3:+2631201 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8.3:+2631455 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8.3:+2631452 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8.3:+2631674 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8.3:+2631221 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8.3:-2631414 MS.gene012430:CDS
GATCGGAATCGATGGTTTCA+GGG 0.428883 8.3:-2630917 MS.gene012430:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8.3:-2630655 MS.gene012430:CDS
TCTGACACCGTGTTTGCATC+TGG 0.435148 8.3:+2630957 None:intergenic
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8.3:+2630880 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8.3:+2631279 None:intergenic
TTGGATCCGAAATTAGGATT+CGG 0.457793 8.3:+2631357 None:intergenic
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8.3:+2631603 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8.3:+2630627 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8.3:-2630709 MS.gene012430:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8.3:+2631449 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8.3:+2630743 None:intergenic
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8.3:+2630742 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8.3:+2630672 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8.3:-2630862 MS.gene012430:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8.3:+2631501 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8.3:+2631762 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8.3:-2631822 None:intergenic
CATCCAGACGCGCTCGTGGC+GGG 0.525795 8.3:+2631647 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8.3:-2630642 MS.gene012430:CDS
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8.3:+2631541 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8.3:+2631596 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8.3:-2630824 MS.gene012430:CDS
TGACCGTAACCGTCGTCAGT+AGG 0.571111 8.3:+2631411 None:intergenic
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8.3:+2631548 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8.3:-2630885 MS.gene012430:CDS
ATCGGAATCGATGGTTTCAG+GGG 0.573412 8.3:-2630916 MS.gene012430:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8.3:+2631677 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8.3:+2631765 None:intergenic
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8.3:+2631492 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8.3:+2631533 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8.3:+2631180 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8.3:+2630651 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8.3:-2630847 MS.gene012430:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8.3:+2631536 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8.3:-2630867 MS.gene012430:CDS
ATGATGAATCATAACTCAGA+AGG 0.596503 8.3:-2631171 MS.gene012430:CDS
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8.3:+2630685 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8.3:+2631528 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8.3:-2630839 MS.gene012430:CDS
ACATCCAGACGCGCTCGTGG+CGG 0.606168 8.3:+2631646 None:intergenic
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8.3:+2631186 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8.3:-2630743 MS.gene012430:CDS
CTATGGCTAATGGAATGTGA+TGG 0.620066 8.3:+2631099 None:intergenic
ATCTTCACTTGACGTAGGAG+TGG 0.622983 8.3:-2630982 MS.gene012430:CDS
TCGTCATCTTCACTTGACGT+AGG 0.628545 8.3:-2630987 MS.gene012430:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8.3:-2630896 MS.gene012430:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8.3:+2631479 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.633617 8.3:-2630761 MS.gene012430:CDS
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8.3:-2630848 MS.gene012430:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8.3:+2631500 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8.3:+2631643 None:intergenic
AGTGGTGCCAGATGCAAACA+CGG 0.653433 8.3:-2630964 MS.gene012430:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8.3:+2630663 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8.3:-2630715 MS.gene012430:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8.3:-2631420 MS.gene012430:CDS
ATAGAAACGCAGAATCAGAA+CGG 0.671868 8.3:+2631715 None:intergenic
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8.3:+2631470 None:intergenic
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8.3:-2630892 MS.gene012430:CDS
TCGGAATCGATGGTTTCAGG+GGG 0.701775 8.3:-2630915 MS.gene012430:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8.3:-2631386 MS.gene012430:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8.3:+2631434 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8.3:-2630895 MS.gene012430:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8.3:-2631819 MS.gene012430:CDS
AAACTAAACCTACTCCAGCG+CGG 0.776053 8.3:-2631194 MS.gene012430:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8.3:+2630673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTACTTACGCTA+TGG + chr8.3:2631360-2631379 None:intergenic 20.0%
! GAGTAATCAAAATCAAGAAA+TGG + chr8.3:2631163-2631182 None:intergenic 25.0%
!! GATATCATACAATTTTGGAT+CGG - chr8.3:2631505-2631524 MS.gene012430:CDS 25.0%
!! TCAGAGATATCATACAATTT+TGG - chr8.3:2631500-2631519 MS.gene012430:CDS 25.0%
ATCTTGAGTTTCATTGAGTT+TGG + chr8.3:2631104-2631123 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG - chr8.3:2631268-2631287 MS.gene012430:CDS 30.0%
! GAATAGTCTTCTCGAATTTT+CGG + chr8.3:2631646-2631665 None:intergenic 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG - chr8.3:2631427-2631446 MS.gene012430:CDS 30.0%
AACAACGAAATTGAAAGACG+CGG + chr8.3:2631008-2631027 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG - chr8.3:2631135-2631154 MS.gene012430:CDS 35.0%
AGCAACACAATTATGTGGAA+TGG - chr8.3:2631577-2631596 MS.gene012430:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG - chr8.3:2631784-2631803 MS.gene012430:CDS 35.0%
ATAGAAACGCAGAATCAGAA+CGG + chr8.3:2630727-2630746 None:intergenic 35.0%
ATTACTTACGCTATGGCTAA+TGG + chr8.3:2631353-2631372 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG - chr8.3:2631076-2631095 MS.gene012430:intron 35.0%
TAAACGAACCGAAATTGACT+CGG - chr8.3:2631724-2631743 MS.gene012430:CDS 35.0%
TTGAGTTTGGATCCGAAATT+AGG + chr8.3:2631091-2631110 None:intergenic 35.0%
TTGCAAGAATCACATAGCTT+AGG + chr8.3:2630680-2630699 None:intergenic 35.0%
TTGGATCCGAAATTAGGATT+CGG + chr8.3:2631085-2631104 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG + chr8.3:2631332-2631351 None:intergenic 35.0%
CAAGAATCACATAGCTTAGG+TGG + chr8.3:2630677-2630696 None:intergenic 40.0%
CAAGGAGCAACACAATTATG+TGG - chr8.3:2631572-2631591 MS.gene012430:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG + chr8.3:2631791-2631810 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG + chr8.3:2631343-2631362 None:intergenic 40.0%
GAAAAGCTTATGCAGAAACC+CGG - chr8.3:2631678-2631697 MS.gene012430:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG - chr8.3:2631615-2631634 MS.gene012430:CDS 40.0%
TTTGTTAGCAGAGTGAATGG+TGG + chr8.3:2630765-2630784 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG - chr8.3:2631514-2631533 MS.gene012430:CDS 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG - chr8.3:2630641-2630660 MS.gene012430:CDS 40.0%
! TGCTGCAGTTATTGTTGTTC+TGG + chr8.3:2631195-2631214 None:intergenic 40.0%
!! ATGCTAATGGACTGTCCATA+CGG - chr8.3:2631797-2631816 MS.gene012430:CDS 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG + chr8.3:2630768-2630787 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG + chr8.3:2631241-2631260 None:intergenic 40.0%
AAACTAAACCTACTCCAGCG+CGG - chr8.3:2631245-2631264 MS.gene012430:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG + chr8.3:2631221-2631240 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG + chr8.3:2631779-2631798 None:intergenic 45.0%
ATCAGAACGGCAAAAAAGCG+CGG + chr8.3:2630714-2630733 None:intergenic 45.0%
ATCGGAATCGATGGTTTCAG+GGG - chr8.3:2631523-2631542 MS.gene012430:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG - chr8.3:2631457-2631476 MS.gene012430:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG - chr8.3:2631692-2631711 MS.gene012430:CDS 45.0%
GATCAGCAGGGTTATAGAGA+CGG + chr8.3:2631757-2631776 None:intergenic 45.0%
GATCGGAATCGATGGTTTCA+GGG - chr8.3:2631522-2631541 MS.gene012430:CDS 45.0%
GATTCAGCGGAGTCAAAGAA+AGG + chr8.3:2630950-2630969 None:intergenic 45.0%
GGGGTGTGAATAGTAACCAA+GGG - chr8.3:2631543-2631562 MS.gene012430:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG - chr8.3:2631544-2631563 MS.gene012430:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG + chr8.3:2631735-2631754 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG - chr8.3:2631452-2631471 MS.gene012430:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG - chr8.3:2631547-2631566 MS.gene012430:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG + chr8.3:2631262-2631281 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG - chr8.3:2631019-2631038 MS.gene012430:intron 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG - chr8.3:2630645-2630664 MS.gene012430:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG + chr8.3:2631718-2631737 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG - chr8.3:2631730-2631749 MS.gene012430:CDS 45.0%
!! TTAATTAATTAATAATGATT+TGG - chr8.3:2631412-2631431 MS.gene012430:CDS 5.0%
ACCGGCCTTTAATTCTAGGC+CGG + chr8.3:2631700-2631719 None:intergenic 50.0%
ATCGTGAAGCGAGGGTTATG+AGG - chr8.3:2631600-2631619 MS.gene012430:CDS 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG + chr8.3:2630941-2630960 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG + chr8.3:2631704-2631723 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG + chr8.3:2630942-2630961 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG - chr8.3:2631521-2631540 MS.gene012430:CDS 50.0%
GTTCCTACTGACGACGGTTA+CGG - chr8.3:2631025-2631044 MS.gene012430:intron 50.0%
TCGGAATCGATGGTTTCAGG+GGG - chr8.3:2631524-2631543 MS.gene012430:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG + chr8.3:2631485-2631504 None:intergenic 50.0%
TGGAATGGATCGTGAAGCGA+GGG - chr8.3:2631592-2631611 MS.gene012430:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG - chr8.3:2631475-2631494 MS.gene012430:CDS 50.0%
! GGATTTGACGACGGATTCAG+CGG + chr8.3:2630963-2630982 None:intergenic 50.0%
! GGGGGTGTGAATAGTAACCA+AGG - chr8.3:2631542-2631561 MS.gene012430:CDS 50.0%
AAAGTGGGAACGACGCCGTA+TGG + chr8.3:2631815-2631834 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG - chr8.3:2631554-2631573 MS.gene012430:CDS 55.0%
ATGATGCTGAAGCAGCTGCG+TGG - chr8.3:2631053-2631072 MS.gene012430:intron 55.0%
CCCGGCCTAGAATTAAAGGC+CGG - chr8.3:2631696-2631715 MS.gene012430:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG + chr8.3:2631699-2631718 None:intergenic 55.0%
GAACTGCGAGAGGATCAGCA+GGG + chr8.3:2631769-2631788 None:intergenic 55.0%
GTGGAATGGATCGTGAAGCG+AGG - chr8.3:2631591-2631610 MS.gene012430:CDS 55.0%
TGACCGTAACCGTCGTCAGT+AGG + chr8.3:2631031-2631050 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG + chr8.3:2630846-2630865 None:intergenic 55.0%
TTCATCATCCGCGCTGGAGT+AGG + chr8.3:2631256-2631275 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG + chr8.3:2630711-2630730 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG + chr8.3:2630894-2630913 None:intergenic 55.0%
GGAACTGCGAGAGGATCAGC+AGG + chr8.3:2631770-2631789 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG + chr8.3:2630972-2630991 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG + chr8.3:2630909-2630928 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG + chr8.3:2631562-2631581 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG + chr8.3:2630710-2630729 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG + chr8.3:2630839-2630858 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG + chr8.3:2630906-2630925 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG + chr8.3:2630796-2630815 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG + chr8.3:2630799-2630818 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG + chr8.3:2630914-2630933 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG + chr8.3:2630901-2630920 None:intergenic 65.0%
AGACGCGGCTGCTGCAGCAG+CGG + chr8.3:2630993-2631012 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG + chr8.3:2630795-2630814 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG - chr8.3:2630789-2630808 MS.gene012430:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG + chr8.3:2630984-2631003 None:intergenic 75.0%
! CGCGGCTGCTGCAGCAGCGG+CGG + chr8.3:2630990-2631009 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG + chr8.3:2630987-2631006 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 2630623 2631838 2630623 ID=MS.gene012430
chr8.3 mRNA 2630623 2631838 2630623 ID=MS.gene012430.t1;Parent=MS.gene012430
chr8.3 exon 2631098 2631838 2631098 ID=MS.gene012430.t1.exon1;Parent=MS.gene012430.t1
chr8.3 CDS 2631098 2631838 2631098 ID=cds.MS.gene012430.t1;Parent=MS.gene012430.t1
chr8.3 exon 2630623 2631012 2630623 ID=MS.gene012430.t1.exon2;Parent=MS.gene012430.t1
chr8.3 CDS 2630623 2631012 2630623 ID=cds.MS.gene012430.t1;Parent=MS.gene012430.t1
Gene Sequence

>MS.gene012430

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCGTTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAACAATAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTAAGTAATTAATTAATTAATTAATAAGTGTCATTAGAAGTTAATTAATTAATTAATTAATAATGATTTGGTTTGTTATTAGCAGGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGGTGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCGCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG
Protein sequence

>MS.gene012430.t1

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNNNCSNAMNDSVVPVQTKPTPARMMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDANTVSEISYNFGSESMVSGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF