Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33570.t1 | RHN82025.1 | 93.4 | 273 | 10 | 3 | 1 | 270 | 20 | 287 | 3.00E-136 | 494.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33570.t1 | Q43072 | 73.7 | 262 | 61 | 5 | 16 | 270 | 14 | 274 | 2.4e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33570.t1 | A0A072VQG6 | 93.4 | 273 | 10 | 3 | 1 | 270 | 1 | 268 | 2.1e-136 | 494.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene33570 | 0.802726 | 4.89E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene33570 | 0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene33570 | 0.826593 | 2.49E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene33570 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene33570 | 0.80912 | 2.21E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene33570 | 0.818357 | 2.04E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene33570 | 0.801715 | 7.90E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene33570 | 0.830055 | 3.64E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene33570 | 0.844904 | 5.66E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene33570 | 0.817997 | 2.47E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene33570 | 0.815778 | 7.77E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene33570 | 0.843616 | 1.26E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene33570 | 0.816899 | 4.36E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene33570 | 0.842044 | 3.29E-58 | -1.69E-46 |
| MS.gene052164 | MS.gene33570 | 0.849073 | 4.09E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene33570 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene33570 | 0.830424 | 2.96E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene33570 | 0.810552 | 1.09E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene33570 | 0.828676 | 7.88E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene33570 | 0.808429 | 3.11E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene33570 | 0.80937 | 1.96E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene33570 | 0.826345 | 2.86E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene33570 | 0.852724 | 3.83E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene33570 | 0.827426 | 1.58E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene33570 | 0.807424 | 5.09E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene33570 | 0.821343 | 4.25E-53 | -1.69E-46 |
| MS.gene056040 | MS.gene33570 | 0.82038 | 7.07E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene33570 | 0.800987 | 1.11E-48 | -1.69E-46 |
| MS.gene056409 | MS.gene33570 | 0.807173 | 5.75E-50 | -1.69E-46 |
| MS.gene056610 | MS.gene33570 | 0.806725 | 7.15E-50 | -1.69E-46 |
| MS.gene057289 | MS.gene33570 | 0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene33570 | 0.800689 | 1.28E-48 | -1.69E-46 |
| MS.gene058120 | MS.gene33570 | 0.815944 | 7.13E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene33570 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene33570 | 0.82731 | 1.68E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene33570 | 0.807523 | 4.85E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene33570 | 0.812144 | 4.91E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene33570 | 0.842049 | 3.28E-58 | -1.69E-46 |
| MS.gene059303 | MS.gene33570 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene059667 | MS.gene33570 | 0.81385 | 2.08E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene33570 | 0.82056 | 6.43E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene33570 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene33570 | 0.810991 | 8.75E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene33570 | 0.804982 | 1.66E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene33570 | 0.800812 | 1.21E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33570 | MS.gene012540 | PPI |
| MS.gene33570 | MS.gene035606 | PPI |
| MS.gene58078 | MS.gene33570 | PPI |
| MS.gene33570 | MS.gene002039 | PPI |
| MS.gene33570 | MS.gene00613 | PPI |
| MS.gene047205 | MS.gene33570 | PPI |
| MS.gene33570 | MS.gene072063 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33570.t1 | MTR_1g103820 | 93.407 | 273 | 10 | 3 | 1 | 270 | 1 | 268 | 0.0 | 505 |
| MS.gene33570.t1 | MTR_8g045710 | 81.356 | 59 | 8 | 1 | 146 | 201 | 8 | 66 | 2.42e-25 | 98.6 |
| MS.gene33570.t1 | MTR_1g071390 | 41.525 | 118 | 17 | 2 | 100 | 217 | 1 | 66 | 1.22e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33570.t1 | AT4G14910 | 86.500 | 200 | 26 | 1 | 71 | 270 | 67 | 265 | 1.34e-124 | 356 |
| MS.gene33570.t1 | AT3G22425 | 88.482 | 191 | 22 | 0 | 80 | 270 | 73 | 263 | 2.73e-124 | 355 |
| MS.gene33570.t1 | AT4G14910 | 86.869 | 198 | 25 | 1 | 71 | 268 | 67 | 263 | 1.50e-123 | 353 |
| MS.gene33570.t1 | AT4G14910 | 86.869 | 198 | 25 | 1 | 71 | 268 | 67 | 263 | 2.63e-123 | 354 |
| MS.gene33570.t1 | AT3G22425 | 87.970 | 133 | 16 | 0 | 80 | 212 | 73 | 205 | 1.45e-83 | 251 |
Find 78 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCAGTTAAAATTAATT+TGG | 0.145809 | 1.3:-71139714 | MS.gene33570:CDS |
| AAAATTAATTTGGATGGAAA+TGG | 0.293645 | 1.3:-71139704 | MS.gene33570:CDS |
| GAACATCTCCGCCGCTGCTT+TGG | 0.321234 | 1.3:-71139910 | MS.gene33570:CDS |
| GAAGATGTCGCTCTTGCTAT+TGG | 0.325704 | 1.3:-71138947 | MS.gene33570:CDS |
| AAATTAATTTGGATGGAAAT+GGG | 0.326506 | 1.3:-71139703 | MS.gene33570:CDS |
| GACCTTGTCCAGGATTTATC+TGG | 0.333580 | 1.3:-71138101 | MS.gene33570:intron |
| ATCATTTCAGGTGCTAGAAT+TGG | 0.340324 | 1.3:-71139767 | MS.gene33570:intron |
| CAGGCTTTGCTGCAGGCTCT+TGG | 0.348810 | 1.3:-71138602 | MS.gene33570:CDS |
| GGGGTTGCTGATAATAGTTC+TGG | 0.350949 | 1.3:-71139683 | MS.gene33570:CDS |
| GAAGTAAAACCTGAGTCAAT+TGG | 0.354938 | 1.3:+71139855 | None:intergenic |
| AACTGATACATTAGTTTCCT+TGG | 0.365756 | 1.3:+71139727 | None:intergenic |
| CATCTCCGCCGCTGCTTTGG+TGG | 0.367364 | 1.3:-71139907 | MS.gene33570:CDS |
| CAGTCATTGGTGAACACATC+TGG | 0.380574 | 1.3:-71137778 | MS.gene33570:CDS |
| AATATGATGGGAATTTGTTC+CGG | 0.398429 | 1.3:+71137499 | None:intergenic |
| TTCCGTCTCTGAAATCATCT+AGG | 0.399239 | 1.3:-71140028 | MS.gene33570:CDS |
| ACATACCTACTCAGAGGGTT+GGG | 0.407867 | 1.3:-71138052 | MS.gene33570:CDS |
| AGCCCTAGCAAATGCTTTGA+AGG | 0.411264 | 1.3:+71137466 | None:intergenic |
| TCATCTCCAGGCTTTGCTGC+AGG | 0.425450 | 1.3:-71138609 | MS.gene33570:intron |
| TCAGTTAAAATTAATTTGGA+TGG | 0.425680 | 1.3:-71139710 | MS.gene33570:CDS |
| TGCTGCAGGCTCTTGGTGAT+AGG | 0.428704 | 1.3:-71138595 | MS.gene33570:CDS |
| AAAAGTGGGGATGTTGGGTT+GGG | 0.436768 | 1.3:+71139981 | None:intergenic |
| ATCAAGCATATGATCAAGAA+AGG | 0.443469 | 1.3:+71139655 | None:intergenic |
| TCCGCCGCTGCTTTGGTGGA+TGG | 0.445471 | 1.3:-71139903 | MS.gene33570:CDS |
| GATGATTTCAGAGACGGAAA+TGG | 0.447710 | 1.3:+71140032 | None:intergenic |
| ATTCAGTGAGGTGAGATTGC+GGG | 0.447732 | 1.3:+71139941 | None:intergenic |
| AGCATTAGTTCACGTTTCTC+TGG | 0.449545 | 1.3:-71138528 | MS.gene33570:intron |
| TTTGAGTGCAACTGAGTTTG+TGG | 0.451500 | 1.3:+71140062 | None:intergenic |
| AAGTAAAACCTGAGTCAATT+GGG | 0.453277 | 1.3:+71139856 | None:intergenic |
| GTGATAGGAAGGGTATTAAC+CGG | 0.453455 | 1.3:-71138580 | MS.gene33570:CDS |
| AGGAAGGGTATTAACCGGTT+TGG | 0.454615 | 1.3:-71138575 | MS.gene33570:CDS |
| AGCAGCGGCGGAGATGTTCC+TGG | 0.459063 | 1.3:+71139914 | None:intergenic |
| CTAGAATTGGAGAGGTGAAA+AGG | 0.463775 | 1.3:-71139754 | MS.gene33570:CDS |
| CAACCTTCAAAGCATTTGCT+AGG | 0.466744 | 1.3:-71137469 | MS.gene33570:CDS |
| TTATCTGGCCGACCGCATCT+AGG | 0.476067 | 1.3:-71138086 | MS.gene33570:CDS |
| AATTAATTTGGATGGAAATG+GGG | 0.492287 | 1.3:-71139702 | MS.gene33570:CDS |
| TCCGTCTCTGAAATCATCTA+GGG | 0.497267 | 1.3:-71140027 | MS.gene33570:CDS |
| AACATACCTACTCAGAGGGT+TGG | 0.513836 | 1.3:-71138053 | MS.gene33570:CDS |
| AAATTCCCATCATATTATTG+AGG | 0.526922 | 1.3:-71137492 | MS.gene33570:CDS |
| GACGTACATGTAAAGGCTAC+AGG | 0.527407 | 1.3:-71139001 | MS.gene33570:CDS |
| TCAACTTTCCCAATTGACTC+AGG | 0.527990 | 1.3:-71139864 | MS.gene33570:intron |
| GCAGGCTCTTGGTGATAGGA+AGG | 0.531782 | 1.3:-71138591 | MS.gene33570:CDS |
| AGGTTGCCTCAATAATATGA+TGG | 0.535692 | 1.3:+71137486 | None:intergenic |
| GCTGCTTTGGTGGATGGCAA+TGG | 0.538954 | 1.3:-71139897 | MS.gene33570:CDS |
| CGACATCTTCATTTGTGTGA+TGG | 0.542341 | 1.3:+71138960 | None:intergenic |
| TTTCAGCAACTTGCTTCACA+TGG | 0.550479 | 1.3:-71139031 | MS.gene33570:intron |
| TGAACTAATGCTTCATCAAG+TGG | 0.551680 | 1.3:+71138539 | None:intergenic |
| GCCATCCACCAAAGCAGCGG+CGG | 0.554726 | 1.3:+71139902 | None:intergenic |
| GATTCAGTGAGGTGAGATTG+CGG | 0.555231 | 1.3:+71139940 | None:intergenic |
| GAGCAGAGAAGTTACCAAAC+CGG | 0.559283 | 1.3:+71138561 | None:intergenic |
| ACTGTTTGACGTACATGTAA+AGG | 0.559891 | 1.3:-71139008 | MS.gene33570:CDS |
| ACCCTAGATGATTTCAGAGA+CGG | 0.560120 | 1.3:+71140026 | None:intergenic |
| AACCTTCAAAGCATTTGCTA+GGG | 0.561828 | 1.3:-71137468 | MS.gene33570:CDS |
| CAGATGTGTTCACCAATGAC+TGG | 0.561881 | 1.3:+71137779 | None:intergenic |
| TCAAGCATATGATCAAGAAA+GGG | 0.563364 | 1.3:+71139656 | None:intergenic |
| GGTTGCCTCAATAATATGAT+GGG | 0.565515 | 1.3:+71137487 | None:intergenic |
| TAGAATTGGAGAGGTGAAAA+GGG | 0.571453 | 1.3:-71139753 | MS.gene33570:CDS |
| GCAGCGGCGGAGATGTTCCT+GGG | 0.571795 | 1.3:+71139915 | None:intergenic |
| TCAGTACCTGTCGAATGTGA+AGG | 0.592945 | 1.3:+71137749 | None:intergenic |
| CATACCTACTCAGAGGGTTG+GGG | 0.594176 | 1.3:-71138051 | MS.gene33570:CDS |
| ATTGCCATCCACCAAAGCAG+CGG | 0.599331 | 1.3:+71139899 | None:intergenic |
| TCACCTCACTGAATCCTCCC+AGG | 0.604648 | 1.3:-71139932 | MS.gene33570:CDS |
| CAGTACCTGTCGAATGTGAA+GGG | 0.609054 | 1.3:+71137750 | None:intergenic |
| TATGACCCTTCACATTCGAC+AGG | 0.612406 | 1.3:-71137755 | MS.gene33570:intron |
| TTCAGGTGCTAGAATTGGAG+AGG | 0.615450 | 1.3:-71139762 | MS.gene33570:intron |
| TAGACCTTGGTATTGTTCCA+CGG | 0.623101 | 1.3:+71137411 | None:intergenic |
| GGTTGGGGCATACGACACTC+AGG | 0.623135 | 1.3:-71138036 | MS.gene33570:intron |
| TATGCCCCAACCCTCTGAGT+AGG | 0.625898 | 1.3:+71138047 | None:intergenic |
| CAGGCTCTTGGTGATAGGAA+GGG | 0.631297 | 1.3:-71138590 | MS.gene33570:CDS |
| CTTAAACATACCTACTCAGA+GGG | 0.645466 | 1.3:-71138057 | MS.gene33570:CDS |
| TGTCGCTCTTGCTATTGGAA+CGG | 0.647644 | 1.3:-71138942 | MS.gene33570:intron |
| AGTCATAACCTAGATGCGGT+CGG | 0.664165 | 1.3:+71138078 | None:intergenic |
| GAGTATGATACACGTCGCCG+TGG | 0.666793 | 1.3:-71137428 | MS.gene33570:CDS |
| ACTTAAACATACCTACTCAG+AGG | 0.687734 | 1.3:-71138058 | MS.gene33570:CDS |
| TTTAAGTCATAACCTAGATG+CGG | 0.688778 | 1.3:+71138074 | None:intergenic |
| AGAGGTGAAAAGGGTCACCA+AGG | 0.711904 | 1.3:-71139744 | MS.gene33570:CDS |
| GCGGCGGAGATGTTCCTGGG+AGG | 0.718744 | 1.3:+71139918 | None:intergenic |
| GTCGCCGTGGAACAATACCA+AGG | 0.723313 | 1.3:-71137415 | MS.gene33570:intron |
| GTTCCTGGGAGGATTCAGTG+AGG | 0.795914 | 1.3:+71139929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTTAAATCTATAAA+TGG | - | chr1.3:71138978-71138997 | MS.gene33570:CDS | 10.0% |
| !! | AATATATATTAAAAAAAGCA+TGG | + | chr1.3:71139835-71139854 | None:intergenic | 10.0% |
| !! | TACTAAAAAAAACAAAAAAT+TGG | + | chr1.3:71140016-71140035 | None:intergenic | 10.0% |
| !! | AAAAATCGAAAATCTTAAAA+GGG | + | chr1.3:71137577-71137596 | None:intergenic | 15.0% |
| !! | AAAATAAACTTATATCAAGA+TGG | + | chr1.3:71139223-71139242 | None:intergenic | 15.0% |
| !! | TGTATCAGTTAAAATTAATT+TGG | - | chr1.3:71137675-71137694 | MS.gene33570:intron | 15.0% |
| !! | TTAAAGTTAAAATTGTTCAA+TGG | - | chr1.3:71138294-71138313 | MS.gene33570:intron | 15.0% |
| !!! | AGTAATTTTTTTTATGAAGA+TGG | - | chr1.3:71140032-71140051 | MS.gene33570:CDS | 15.0% |
| !!! | TTACTTTTTTTTATCATTTC+AGG | - | chr1.3:71137610-71137629 | MS.gene33570:intron | 15.0% |
| !! | AAAATCGAAAATCTTAAAAG+GGG | + | chr1.3:71137576-71137595 | None:intergenic | 20.0% |
| !! | ATCTAAAAATAAATGTTGCA+AGG | - | chr1.3:71138021-71138040 | MS.gene33570:intron | 20.0% |
| !! | ATGTCTGTTTAAATACTTTA+TGG | - | chr1.3:71139382-71139401 | MS.gene33570:intron | 20.0% |
| !! | ATTTAACATATTTGTAAGCA+AGG | + | chr1.3:71138971-71138990 | None:intergenic | 20.0% |
| !! | CAAAATGCAATTTAACTAAT+TGG | - | chr1.3:71138635-71138654 | MS.gene33570:intron | 20.0% |
| !! | CCAATAAGAATTTAAGAAAA+TGG | - | chr1.3:71137839-71137858 | MS.gene33570:intron | 20.0% |
| !! | GAAAAATCGAAAATCTTAAA+AGG | + | chr1.3:71137578-71137597 | None:intergenic | 20.0% |
| !! | TGTAGTAGATATTAGATAAA+GGG | - | chr1.3:71138106-71138125 | MS.gene33570:intron | 20.0% |
| !!! | AAAATTAATTTGGATGGAAA+TGG | - | chr1.3:71137685-71137704 | MS.gene33570:intron | 20.0% |
| !!! | AAATTAATTTGGATGGAAAT+GGG | - | chr1.3:71137686-71137705 | MS.gene33570:intron | 20.0% |
| !!! | CCATTTTCTTAAATTCTTAT+TGG | + | chr1.3:71137842-71137861 | None:intergenic | 20.0% |
| !!! | TCAGTTAAAATTAATTTGGA+TGG | - | chr1.3:71137679-71137698 | MS.gene33570:intron | 20.0% |
| ! | AAATTCCCATCATATTATTG+AGG | - | chr1.3:71139897-71139916 | MS.gene33570:CDS | 25.0% |
| ! | AAGATTGAAACTTGAAAAAG+TGG | + | chr1.3:71137426-71137445 | None:intergenic | 25.0% |
| ! | AGAATCAGATTGTAATGATA+AGG | - | chr1.3:71138207-71138226 | MS.gene33570:intron | 25.0% |
| ! | AGATTGAAACTTGAAAAAGT+GGG | + | chr1.3:71137425-71137444 | None:intergenic | 25.0% |
| ! | AGGTTTCTGAATTGAAAATT+AGG | - | chr1.3:71139185-71139204 | MS.gene33570:intron | 25.0% |
| ! | AGTACATAAAAATAAGGAAC+GGG | + | chr1.3:71139543-71139562 | None:intergenic | 25.0% |
| ! | CACAAAACAGAAATTATAGT+GGG | + | chr1.3:71139246-71139265 | None:intergenic | 25.0% |
| ! | CAGTACATAAAAATAAGGAA+CGG | + | chr1.3:71139544-71139563 | None:intergenic | 25.0% |
| ! | CTACTTATTAAAGTTGTTTG+TGG | - | chr1.3:71138516-71138535 | MS.gene33570:intron | 25.0% |
| ! | CTCATCAGTACATAAAAATA+AGG | + | chr1.3:71139549-71139568 | None:intergenic | 25.0% |
| ! | GATTATAATCTTATGACTGT+GGG | - | chr1.3:71138674-71138693 | MS.gene33570:intron | 25.0% |
| ! | GTCTATAAAAGATTCTATCT+AGG | - | chr1.3:71138159-71138178 | MS.gene33570:intron | 25.0% |
| ! | GTGTAGTAGATATTAGATAA+AGG | - | chr1.3:71138105-71138124 | MS.gene33570:intron | 25.0% |
| ! | TATAATCATTGTTAGAGTTG+TGG | + | chr1.3:71138661-71138680 | None:intergenic | 25.0% |
| ! | TCTAACTTGAAAACTAGTTA+AGG | - | chr1.3:71138256-71138275 | MS.gene33570:intron | 25.0% |
| ! | TGATTATAATCTTATGACTG+TGG | - | chr1.3:71138673-71138692 | MS.gene33570:intron | 25.0% |
| ! | TTAACTCAAATCTTTAACAG+AGG | + | chr1.3:71138920-71138939 | None:intergenic | 25.0% |
| !! | AATTAATTTGGATGGAAATG+GGG | - | chr1.3:71137687-71137706 | MS.gene33570:intron | 25.0% |
| !!! | AACTAGTTTTCAAGTTAGAA+AGG | + | chr1.3:71138255-71138274 | None:intergenic | 25.0% |
| AAGTAAAACCTGAGTCAATT+GGG | + | chr1.3:71137536-71137555 | None:intergenic | 30.0% | |
| AGACGCAAAATTTATTGATG+TGG | + | chr1.3:71139078-71139097 | None:intergenic | 30.0% | |
| ATCAAGCATATGATCAAGAA+AGG | + | chr1.3:71137737-71137756 | None:intergenic | 30.0% | |
| CGATGAAATAATACACATTC+TGG | + | chr1.3:71138047-71138066 | None:intergenic | 30.0% | |
| GATTGAAACTTGAAAAAGTG+GGG | + | chr1.3:71137424-71137443 | None:intergenic | 30.0% | |
| GCACAAAACAGAAATTATAG+TGG | + | chr1.3:71139247-71139266 | None:intergenic | 30.0% | |
| TAAAAATAAGGAACGGGAAA+AGG | + | chr1.3:71139537-71139556 | None:intergenic | 30.0% | |
| TAGATATTAGATAAAGGGCT+AGG | - | chr1.3:71138111-71138130 | MS.gene33570:intron | 30.0% | |
| TATAGTTGAATACTGAGCAT+GGG | - | chr1.3:71138078-71138097 | MS.gene33570:CDS | 30.0% | |
| TCAAGCATATGATCAAGAAA+GGG | + | chr1.3:71137736-71137755 | None:intergenic | 30.0% | |
| TCAGAAAGTTCAGTTATCAA+TGG | - | chr1.3:71139097-71139116 | MS.gene33570:intron | 30.0% | |
| TCAGTTTATGTGAACAAACT+TGG | - | chr1.3:71138327-71138346 | MS.gene33570:intron | 30.0% | |
| TGAGGATATTGCTTAAAGAT+TGG | - | chr1.3:71138568-71138587 | MS.gene33570:CDS | 30.0% | |
| TGCACAGATGAATTCAAAAT+TGG | + | chr1.3:71139863-71139882 | None:intergenic | 30.0% | |
| TTATAGTTGAATACTGAGCA+TGG | - | chr1.3:71138077-71138096 | MS.gene33570:CDS | 30.0% | |
| TTTAAGTCATAACCTAGATG+CGG | + | chr1.3:71139318-71139337 | None:intergenic | 30.0% | |
| TTTGACTATTGAGCTTCAAA+TGG | - | chr1.3:71139456-71139475 | MS.gene33570:intron | 30.0% | |
| TTTGTTCACATAAACTGACA+TGG | + | chr1.3:71138325-71138344 | None:intergenic | 30.0% | |
| ! | AAATTGCATTTTGCACAGAA+AGG | + | chr1.3:71138628-71138647 | None:intergenic | 30.0% |
| ! | AACTGATACATTAGTTTCCT+TGG | + | chr1.3:71137665-71137684 | None:intergenic | 30.0% |
| ! | AATATGATGGGAATTTGTTC+CGG | + | chr1.3:71139893-71139912 | None:intergenic | 30.0% |
| ! | AATGCTAAAGATGTTTTACC+AGG | - | chr1.3:71139749-71139768 | MS.gene33570:CDS | 30.0% |
| ! | TAAATTCAAGCCTCAGTTTT+CGG | - | chr1.3:71139806-71139825 | MS.gene33570:intron | 30.0% |
| !! | GAAACTTTGAAGCAATGTAA+TGG | - | chr1.3:71139006-71139025 | MS.gene33570:CDS | 30.0% |
| ACGCCTTCAATATAAAGTGT+TGG | - | chr1.3:71137908-71137927 | MS.gene33570:intron | 35.0% | |
| ACTGTTTGACGTACATGTAA+AGG | - | chr1.3:71138381-71138400 | MS.gene33570:intron | 35.0% | |
| ACTTAAACATACCTACTCAG+AGG | - | chr1.3:71139331-71139350 | MS.gene33570:intron | 35.0% | |
| AGGTTGCCTCAATAATATGA+TGG | + | chr1.3:71139906-71139925 | None:intergenic | 35.0% | |
| ATTTACGTTACTTCATCTCC+AGG | - | chr1.3:71138768-71138787 | MS.gene33570:intron | 35.0% | |
| CGAACATGCTTCATTATCTT+AGG | - | chr1.3:71138544-71138563 | MS.gene33570:CDS | 35.0% | |
| CTTAAACATACCTACTCAGA+GGG | - | chr1.3:71139332-71139351 | MS.gene33570:intron | 35.0% | |
| GAAGTAAAACCTGAGTCAAT+TGG | + | chr1.3:71137537-71137556 | None:intergenic | 35.0% | |
| GCACCAACACTTTATATTGA+AGG | + | chr1.3:71137914-71137933 | None:intergenic | 35.0% | |
| GGTTGCCTCAATAATATGAT+GGG | + | chr1.3:71139905-71139924 | None:intergenic | 35.0% | |
| TAGAATTGGAGAGGTGAAAA+GGG | - | chr1.3:71137636-71137655 | MS.gene33570:intron | 35.0% | |
| TGAACTAATGCTTCATCAAG+TGG | + | chr1.3:71138853-71138872 | None:intergenic | 35.0% | |
| TGCGTAATAAAAGACATACG+TGG | + | chr1.3:71137971-71137990 | None:intergenic | 35.0% | |
| ! | AACCTTCAAAGCATTTGCTA+GGG | - | chr1.3:71139921-71139940 | MS.gene33570:CDS | 35.0% |
| ! | ATCATTTCAGGTGCTAGAAT+TGG | - | chr1.3:71137622-71137641 | MS.gene33570:intron | 35.0% |
| ! | ATTTGAGTTAACGTGTGTTG+AGG | - | chr1.3:71138929-71138948 | MS.gene33570:intron | 35.0% |
| ! | TGCTTCATTATCTTAGGTTG+AGG | - | chr1.3:71138550-71138569 | MS.gene33570:CDS | 35.0% |
| ! | TTATGTACTGATGAGTCTTC+TGG | - | chr1.3:71139554-71139573 | MS.gene33570:intron | 35.0% |
| !! | GGTACTGATACATAGAATCT+AGG | - | chr1.3:71139655-71139674 | MS.gene33570:CDS | 35.0% |
| AAATAAGGAACGGGAAAAGG+TGG | + | chr1.3:71139534-71139553 | None:intergenic | 40.0% | |
| ACCCTAGATGATTTCAGAGA+CGG | + | chr1.3:71137366-71137385 | None:intergenic | 40.0% | |
| ACTTGAAAAAGTGGGGATGT+TGG | + | chr1.3:71137417-71137436 | None:intergenic | 40.0% | |
| AGCATTAGTTCACGTTTCTC+TGG | - | chr1.3:71138861-71138880 | MS.gene33570:intron | 40.0% | |
| ATAAATCCTGGACAAGGTCA+GGG | + | chr1.3:71139287-71139306 | None:intergenic | 40.0% | |
| CATAGAATCTAGGTCAGAGT+CGG | - | chr1.3:71139665-71139684 | MS.gene33570:CDS | 40.0% | |
| CGAAAATCTTAAAAGGGGCA+GGG | + | chr1.3:71137571-71137590 | None:intergenic | 40.0% | |
| CGACATCTTCATTTGTGTGA+TGG | + | chr1.3:71138432-71138451 | None:intergenic | 40.0% | |
| CTAGAATTGGAGAGGTGAAA+AGG | - | chr1.3:71137635-71137654 | MS.gene33570:intron | 40.0% | |
| CTTGAAAAAGTGGGGATGTT+GGG | + | chr1.3:71137416-71137435 | None:intergenic | 40.0% | |
| GAAAATCTTAAAAGGGGCAG+GGG | + | chr1.3:71137570-71137589 | None:intergenic | 40.0% | |
| GATGATTTCAGAGACGGAAA+TGG | + | chr1.3:71137360-71137379 | None:intergenic | 40.0% | |
| GTTTGAGAGATACTAGACCT+TGG | + | chr1.3:71139994-71140013 | None:intergenic | 40.0% | |
| TAGACCTTGGTATTGTTCCA+CGG | + | chr1.3:71139981-71140000 | None:intergenic | 40.0% | |
| TATACAGCTCACTTAGCTGT+TGG | + | chr1.3:71138478-71138497 | None:intergenic | 40.0% | |
| TCGAAAATCTTAAAAGGGGC+AGG | + | chr1.3:71137572-71137591 | None:intergenic | 40.0% | |
| TCTAGCAGTACTTGTTCACA+AGG | - | chr1.3:71139165-71139184 | MS.gene33570:intron | 40.0% | |
| TGGCAGTGCAAAAGTAACAA+AGG | + | chr1.3:71137790-71137809 | None:intergenic | 40.0% | |
| TTTGAGTGCAACTGAGTTTG+TGG | + | chr1.3:71137330-71137349 | None:intergenic | 40.0% | |
| ! | ACATCCTTGTTTGTAGTTGG+TGG | - | chr1.3:71139577-71139596 | MS.gene33570:intron | 40.0% |
| ! | AGCTTTAGTGCGATGATAGA+TGG | + | chr1.3:71138745-71138764 | None:intergenic | 40.0% |
| ! | CAACCTTCAAAGCATTTGCT+AGG | - | chr1.3:71139920-71139939 | MS.gene33570:CDS | 40.0% |
| ! | TCAACTTTCCCAATTGACTC+AGG | - | chr1.3:71137525-71137544 | MS.gene33570:intron | 40.0% |
| ! | TGGACATCCTTGTTTGTAGT+TGG | - | chr1.3:71139574-71139593 | MS.gene33570:intron | 40.0% |
| ! | TTATATTGAAGGCGTGTTCC+AGG | + | chr1.3:71137903-71137922 | None:intergenic | 40.0% |
| ! | TTCATCTGTGCACAGTTTTC+CGG | - | chr1.3:71139871-71139890 | MS.gene33570:CDS | 40.0% |
| ! | TTTCAGCAACTTGCTTCACA+TGG | - | chr1.3:71138358-71138377 | MS.gene33570:intron | 40.0% |
| !! | AACGAGAAAGCATTGACACA+AGG | + | chr1.3:71139142-71139161 | None:intergenic | 40.0% |
| !! | GTGATAGGAAGGGTATTAAC+CGG | - | chr1.3:71138809-71138828 | MS.gene33570:intron | 40.0% |
| !! | TCCGTCTCTGAAATCATCTA+GGG | - | chr1.3:71137362-71137381 | MS.gene33570:intron | 40.0% |
| !! | TTCCGTCTCTGAAATCATCT+AGG | - | chr1.3:71137361-71137380 | MS.gene33570:intron | 40.0% |
| !!! | GGAGCATTTTTTCCAGTCAT+TGG | - | chr1.3:71139598-71139617 | MS.gene33570:intron | 40.0% |
| AAAAAGTGGGGATGTTGGGT+TGG | + | chr1.3:71137412-71137431 | None:intergenic | 45.0% | |
| AAAAGTGGGGATGTTGGGTT+GGG | + | chr1.3:71137411-71137430 | None:intergenic | 45.0% | |
| AACATACCTACTCAGAGGGT+TGG | - | chr1.3:71139336-71139355 | MS.gene33570:intron | 45.0% | |
| ACATACCTACTCAGAGGGTT+GGG | - | chr1.3:71139337-71139356 | MS.gene33570:intron | 45.0% | |
| AGCCCTAGCAAATGCTTTGA+AGG | + | chr1.3:71139926-71139945 | None:intergenic | 45.0% | |
| AGTCATAACCTAGATGCGGT+CGG | + | chr1.3:71139314-71139333 | None:intergenic | 45.0% | |
| ATAAAGGGCTAGGTGCACAT+GGG | - | chr1.3:71138121-71138140 | MS.gene33570:intron | 45.0% | |
| ATTCAGTGAGGTGAGATTGC+GGG | + | chr1.3:71137451-71137470 | None:intergenic | 45.0% | |
| CAGATGTGTTCACCAATGAC+TGG | + | chr1.3:71139613-71139632 | None:intergenic | 45.0% | |
| CAGTACCTGTCGAATGTGAA+GGG | + | chr1.3:71139642-71139661 | None:intergenic | 45.0% | |
| CAGTCATTGGTGAACACATC+TGG | - | chr1.3:71139611-71139630 | MS.gene33570:intron | 45.0% | |
| GACCTTGTCCAGGATTTATC+TGG | - | chr1.3:71139288-71139307 | MS.gene33570:intron | 45.0% | |
| GACGTACATGTAAAGGCTAC+AGG | - | chr1.3:71138388-71138407 | MS.gene33570:intron | 45.0% | |
| GAGCAGAGAAGTTACCAAAC+CGG | + | chr1.3:71138831-71138850 | None:intergenic | 45.0% | |
| GATAAATCCTGGACAAGGTC+AGG | + | chr1.3:71139288-71139307 | None:intergenic | 45.0% | |
| GATTCAGTGAGGTGAGATTG+CGG | + | chr1.3:71137452-71137471 | None:intergenic | 45.0% | |
| GGGGTTGCTGATAATAGTTC+TGG | - | chr1.3:71137706-71137725 | MS.gene33570:intron | 45.0% | |
| TATGACCCTTCACATTCGAC+AGG | - | chr1.3:71139634-71139653 | MS.gene33570:intron | 45.0% | |
| TCAGTACCTGTCGAATGTGA+AGG | + | chr1.3:71139643-71139662 | None:intergenic | 45.0% | |
| TGCTCCACCAACTACAAACA+AGG | + | chr1.3:71139584-71139603 | None:intergenic | 45.0% | |
| TTCAGGTGCTAGAATTGGAG+AGG | - | chr1.3:71137627-71137646 | MS.gene33570:intron | 45.0% | |
| ! | GAAGATGTCGCTCTTGCTAT+TGG | - | chr1.3:71138442-71138461 | MS.gene33570:intron | 45.0% |
| !! | AGGAAGGGTATTAACCGGTT+TGG | - | chr1.3:71138814-71138833 | MS.gene33570:intron | 45.0% |
| !! | TGTACAAAGAGCATCTAGCC+TGG | + | chr1.3:71139770-71139789 | None:intergenic | 45.0% |
| !! | TGTCGCTCTTGCTATTGGAA+CGG | - | chr1.3:71138447-71138466 | MS.gene33570:intron | 45.0% |
| AAGGAACGGGAAAAGGTGGA+AGG | + | chr1.3:71139530-71139549 | None:intergenic | 50.0% | |
| AGAGGTGAAAAGGGTCACCA+AGG | - | chr1.3:71137645-71137664 | MS.gene33570:intron | 50.0% | |
| AGCATGGTCTCCGAAAACTG+AGG | + | chr1.3:71139819-71139838 | None:intergenic | 50.0% | |
| ATTGCCATCCACCAAAGCAG+CGG | + | chr1.3:71137493-71137512 | None:intergenic | 50.0% | |
| CATACCTACTCAGAGGGTTG+GGG | - | chr1.3:71139338-71139357 | MS.gene33570:intron | 50.0% | |
| CTAGGTGCACATGGGATGAA+TGG | - | chr1.3:71138129-71138148 | MS.gene33570:intron | 50.0% | |
| GATAAAGGGCTAGGTGCACA+TGG | - | chr1.3:71138120-71138139 | MS.gene33570:intron | 50.0% | |
| GGCCAGATAAATCCTGGACA+AGG | + | chr1.3:71139293-71139312 | None:intergenic | 50.0% | |
| GTATGACACCAACATGTGCC+TGG | - | chr1.3:71137882-71137901 | MS.gene33570:intron | 50.0% | |
| ! | CAGGCTCTTGGTGATAGGAA+GGG | - | chr1.3:71138799-71138818 | MS.gene33570:intron | 50.0% |
| AATCCTGGACAAGGTCAGGG+AGG | + | chr1.3:71139284-71139303 | None:intergenic | 55.0% | |
| GAGTATGATACACGTCGCCG+TGG | - | chr1.3:71139961-71139980 | MS.gene33570:CDS | 55.0% | |
| GGTGCACATGGGATGAATGG+TGG | - | chr1.3:71138132-71138151 | MS.gene33570:intron | 55.0% | |
| GTCGCCGTGGAACAATACCA+AGG | - | chr1.3:71139974-71139993 | MS.gene33570:CDS | 55.0% | |
| GTTCCTGGGAGGATTCAGTG+AGG | + | chr1.3:71137463-71137482 | None:intergenic | 55.0% | |
| TATGCCCCAACCCTCTGAGT+AGG | + | chr1.3:71139345-71139364 | None:intergenic | 55.0% | |
| TCACCTCACTGAATCCTCCC+AGG | - | chr1.3:71137457-71137476 | MS.gene33570:CDS | 55.0% | |
| TCATCTCCAGGCTTTGCTGC+AGG | - | chr1.3:71138780-71138799 | MS.gene33570:intron | 55.0% | |
| TCTTAAAAGGGGCAGGGGTG+AGG | + | chr1.3:71137565-71137584 | None:intergenic | 55.0% | |
| TTATCTGGCCGACCGCATCT+AGG | - | chr1.3:71139303-71139322 | MS.gene33570:intron | 55.0% | |
| TTGCACTGCCACACGTACAC+CGG | - | chr1.3:71137799-71137818 | MS.gene33570:CDS | 55.0% | |
| TTTCCTCCCTGACCTTGTCC+AGG | - | chr1.3:71139278-71139297 | MS.gene33570:intron | 55.0% | |
| ! | GCAGGCTCTTGGTGATAGGA+AGG | - | chr1.3:71138798-71138817 | MS.gene33570:intron | 55.0% |
| ! | GCTGCTTTGGTGGATGGCAA+TGG | - | chr1.3:71137492-71137511 | MS.gene33570:CDS | 55.0% |
| ! | TGCTGCAGGCTCTTGGTGAT+AGG | - | chr1.3:71138794-71138813 | MS.gene33570:intron | 55.0% |
| CAAGAGCCTGCAGCAAAGCC+TGG | + | chr1.3:71138789-71138808 | None:intergenic | 60.0% | |
| CAGGCTTTGCTGCAGGCTCT+TGG | - | chr1.3:71138787-71138806 | MS.gene33570:intron | 60.0% | |
| GAACATCTCCGCCGCTGCTT+TGG | - | chr1.3:71137479-71137498 | MS.gene33570:CDS | 60.0% | |
| GCGGTCGGCCAGATAAATCC+TGG | + | chr1.3:71139299-71139318 | None:intergenic | 60.0% | |
| GGCGACTACGTGTCAGTGTC+CGG | + | chr1.3:71137821-71137840 | None:intergenic | 60.0% | |
| GGCGTGTTCCAGGCACATGT+TGG | + | chr1.3:71137893-71137912 | None:intergenic | 60.0% | |
| GGTTGGGGCATACGACACTC+AGG | - | chr1.3:71139353-71139372 | MS.gene33570:intron | 60.0% | |
| GTCAGTGTCCGGTGTACGTG+TGG | + | chr1.3:71137810-71137829 | None:intergenic | 60.0% | |
| AGCAGCGGCGGAGATGTTCC+TGG | + | chr1.3:71137478-71137497 | None:intergenic | 65.0% | |
| GCAGCGGCGGAGATGTTCCT+GGG | + | chr1.3:71137477-71137496 | None:intergenic | 65.0% | |
| GCCATCCACCAAAGCAGCGG+CGG | + | chr1.3:71137490-71137509 | None:intergenic | 65.0% | |
| ! | CATCTCCGCCGCTGCTTTGG+TGG | - | chr1.3:71137482-71137501 | MS.gene33570:CDS | 65.0% |
| ! | TCCGCCGCTGCTTTGGTGGA+TGG | - | chr1.3:71137486-71137505 | MS.gene33570:CDS | 65.0% |
| GCGGCGGAGATGTTCCTGGG+AGG | + | chr1.3:71137474-71137493 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71137312 | 71140099 | 71137312 | ID=MS.gene33570 |
| chr1.3 | mRNA | 71137312 | 71140099 | 71137312 | ID=MS.gene33570.t1;Parent=MS.gene33570 |
| chr1.3 | exon | 71139865 | 71140099 | 71139865 | ID=MS.gene33570.t1.exon1;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71139865 | 71140099 | 71139865 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71139655 | 71139779 | 71139655 | ID=MS.gene33570.t1.exon2;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71139655 | 71139779 | 71139655 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71138943 | 71139047 | 71138943 | ID=MS.gene33570.t1.exon3;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71138943 | 71139047 | 71138943 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71138529 | 71138621 | 71138529 | ID=MS.gene33570.t1.exon4;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71138529 | 71138621 | 71138529 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71138037 | 71138111 | 71138037 | ID=MS.gene33570.t1.exon5;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71138037 | 71138111 | 71138037 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71137756 | 71137818 | 71137756 | ID=MS.gene33570.t1.exon6;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71137756 | 71137818 | 71137756 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71137416 | 71137525 | 71137416 | ID=MS.gene33570.t1.exon7;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71137416 | 71137525 | 71137416 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| chr1.3 | exon | 71137312 | 71137321 | 71137312 | ID=MS.gene33570.t1.exon8;Parent=MS.gene33570.t1 |
| chr1.3 | CDS | 71137312 | 71137321 | 71137312 | ID=cds.MS.gene33570.t1;Parent=MS.gene33570.t1 |
| Gene Sequence |
| Protein sequence |
