Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013042.t1 | XP_003602950.1 | 93.9 | 362 | 22 | 0 | 1 | 362 | 1 | 362 | 1.50E-175 | 625.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013042.t1 | Q6YXH8 | 51.3 | 279 | 115 | 6 | 58 | 328 | 60 | 325 | 2.2e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013042.t1 | G7J576 | 93.9 | 362 | 22 | 0 | 1 | 362 | 1 | 362 | 1.1e-175 | 625.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029573 | MS.gene013042 | PPI |
| MS.gene013042 | MS.gene065674 | PPI |
| MS.gene013042 | MS.gene043340 | PPI |
| MS.gene013042 | MS.gene35752 | PPI |
| MS.gene013042 | MS.gene31553 | PPI |
| MS.gene92988 | MS.gene013042 | PPI |
| MS.gene013042 | MS.gene029005 | PPI |
| MS.gene013042 | MS.gene71698 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013042.t1 | MTR_3g100710 | 95.028 | 362 | 18 | 0 | 1 | 362 | 1 | 362 | 0.0 | 643 |
| MS.gene013042.t1 | MTR_3g100710 | 87.293 | 362 | 17 | 1 | 1 | 362 | 1 | 333 | 0.0 | 565 |
| MS.gene013042.t1 | MTR_4g080990 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 526 |
| MS.gene013042.t1 | MTR_5g032550 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 6.73e-104 | 310 |
| MS.gene013042.t1 | MTR_5g065830 | 48.588 | 354 | 166 | 8 | 3 | 352 | 4 | 345 | 1.66e-102 | 306 |
| MS.gene013042.t1 | MTR_5g032550 | 54.264 | 258 | 102 | 5 | 1 | 253 | 1 | 247 | 3.12e-82 | 251 |
| MS.gene013042.t1 | MTR_8g068950 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 1.14e-63 | 207 |
| MS.gene013042.t1 | MTR_8g063120 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 1.96e-53 | 180 |
| MS.gene013042.t1 | MTR_8g063120 | 47.027 | 185 | 97 | 1 | 62 | 246 | 59 | 242 | 9.98e-53 | 176 |
| MS.gene013042.t1 | MTR_1g107535 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 9.99e-51 | 174 |
| MS.gene013042.t1 | MTR_5g035360 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 2.90e-50 | 171 |
| MS.gene013042.t1 | MTR_4g094942 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 1.88e-49 | 170 |
| MS.gene013042.t1 | MTR_3g102310 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 5.79e-46 | 160 |
| MS.gene013042.t1 | MTR_5g015670 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 5.37e-37 | 137 |
| MS.gene013042.t1 | MTR_2g011500 | 35.268 | 224 | 131 | 5 | 99 | 319 | 86 | 298 | 2.45e-35 | 131 |
| MS.gene013042.t1 | MTR_2g089490 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 2.48e-35 | 131 |
| MS.gene013042.t1 | MTR_2g089490 | 31.597 | 288 | 173 | 8 | 74 | 353 | 28 | 299 | 2.28e-33 | 125 |
| MS.gene013042.t1 | MTR_3g103080 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 5.58e-31 | 120 |
| MS.gene013042.t1 | MTR_3g060770 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 3.81e-15 | 75.5 |
| MS.gene013042.t1 | MTR_4g095790 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 3.83e-15 | 75.9 |
| MS.gene013042.t1 | MTR_3g107970 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 6.77e-15 | 76.3 |
| MS.gene013042.t1 | MTR_1g011470 | 28.492 | 179 | 123 | 3 | 73 | 251 | 172 | 345 | 1.60e-14 | 74.7 |
| MS.gene013042.t1 | MTR_3g060820 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.91e-13 | 69.7 |
| MS.gene013042.t1 | MTR_3g061680 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 2.95e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013042.t1 | AT5G65420 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.15e-82 | 253 |
| MS.gene013042.t1 | AT5G65420 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 5.02e-81 | 250 |
| MS.gene013042.t1 | AT2G22490 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 5.78e-81 | 251 |
| MS.gene013042.t1 | AT2G22490 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.34e-80 | 251 |
| MS.gene013042.t1 | AT5G10440 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.16e-78 | 243 |
| MS.gene013042.t1 | AT5G65420 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.51e-76 | 237 |
| MS.gene013042.t1 | AT5G10440 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.59e-66 | 210 |
| MS.gene013042.t1 | AT5G65420 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.56e-62 | 199 |
| MS.gene013042.t1 | AT1G70210 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.80e-62 | 202 |
| MS.gene013042.t1 | AT3G50070 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 2.99e-46 | 161 |
| MS.gene013042.t1 | AT4G34160 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 3.29e-45 | 159 |
| MS.gene013042.t1 | AT5G67260 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 3.17e-43 | 154 |
| MS.gene013042.t1 | AT5G67260 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 7.47e-43 | 154 |
| MS.gene013042.t1 | AT4G37630 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.20e-32 | 121 |
| MS.gene013042.t1 | AT4G03270 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.18e-31 | 120 |
| MS.gene013042.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.75e-31 | 118 |
| MS.gene013042.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 2.99e-30 | 118 |
| MS.gene013042.t1 | AT4G03270 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.39e-29 | 115 |
| MS.gene013042.t1 | AT5G02110 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.72e-18 | 84.7 |
| MS.gene013042.t1 | AT1G20610 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.15e-15 | 78.2 |
| MS.gene013042.t1 | AT1G77390 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.63e-15 | 75.5 |
| MS.gene013042.t1 | AT5G02110 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.04e-14 | 74.3 |
| MS.gene013042.t1 | AT4G37490 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.43e-14 | 75.1 |
| MS.gene013042.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.52e-14 | 74.7 |
| MS.gene013042.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.43e-14 | 73.9 |
| MS.gene013042.t1 | AT1G76310 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.02e-13 | 71.6 |
| MS.gene013042.t1 | AT1G76310 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.82e-13 | 69.7 |
Find 79 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 3.3:-83586655 | MS.gene013042:intron |
| TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 3.3:-83587115 | MS.gene013042:intron |
| TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 3.3:-83587846 | MS.gene013042:CDS |
| GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 3.3:-83587163 | MS.gene013042:CDS |
| GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 3.3:-83587370 | MS.gene013042:CDS |
| GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 3.3:+83587327 | None:intergenic |
| ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 3.3:-83587997 | MS.gene013042:CDS |
| TTATCTATCCATTAATTACT+TGG | 0.373505 | 3.3:-83587335 | MS.gene013042:CDS |
| GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 3.3:-83586003 | MS.gene013042:CDS |
| CACTGTTCAACGACATCTCT+TGG | 0.391508 | 3.3:+83586167 | None:intergenic |
| TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 3.3:+83586578 | None:intergenic |
| AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 3.3:+83586796 | None:intergenic |
| TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 3.3:-83587854 | MS.gene013042:CDS |
| CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 3.3:-83587865 | MS.gene013042:CDS |
| CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 3.3:+83587935 | None:intergenic |
| ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 3.3:+83586577 | None:intergenic |
| CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 3.3:-83586605 | MS.gene013042:CDS |
| TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 3.3:-83587376 | MS.gene013042:intron |
| TGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 3.3:-83588029 | MS.gene013042:CDS |
| ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 3.3:-83586191 | MS.gene013042:CDS |
| TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 3.3:+83586982 | None:intergenic |
| AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 3.3:-83586966 | MS.gene013042:CDS |
| AACACACCCATTGGGCTTTG+AGG | 0.450882 | 3.3:+83586100 | None:intergenic |
| ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 3.3:-83587921 | MS.gene013042:CDS |
| CATCATCATTAATCTTAGAA+AGG | 0.451623 | 3.3:+83586873 | None:intergenic |
| TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 3.3:+83586958 | None:intergenic |
| AACACCATCATAACGTTGTT+GGG | 0.457610 | 3.3:+83587958 | None:intergenic |
| GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 3.3:-83586046 | MS.gene013042:CDS |
| TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 3.3:-83588023 | MS.gene013042:CDS |
| AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 3.3:+83586896 | None:intergenic |
| GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 3.3:-83586585 | MS.gene013042:CDS |
| AATGTATCCAACACACCCAT+TGG | 0.480352 | 3.3:+83586091 | None:intergenic |
| AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 3.3:-83587909 | MS.gene013042:CDS |
| TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 3.3:-83588006 | MS.gene013042:CDS |
| AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 3.3:-83587184 | MS.gene013042:CDS |
| GAACACCATCATAACGTTGT+TGG | 0.495114 | 3.3:+83587957 | None:intergenic |
| GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 3.3:-83586606 | MS.gene013042:CDS |
| TCTGATTCAATACATAGAAA+AGG | 0.496974 | 3.3:-83586544 | MS.gene013042:intron |
| ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 3.3:+83586109 | None:intergenic |
| AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 3.3:-83587200 | MS.gene013042:intron |
| GATGGTGAATATGGTGGTGG+TGG | 0.511384 | 3.3:-83588034 | MS.gene013042:CDS |
| ATGTATCCAACACACCCATT+GGG | 0.513076 | 3.3:+83586092 | None:intergenic |
| CTACAAAAGCTCTGATCCAC+AGG | 0.515810 | 3.3:+83585964 | None:intergenic |
| ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 3.3:+83586624 | None:intergenic |
| TTTGATGATGGTGAATATGG+TGG | 0.519686 | 3.3:-83588040 | MS.gene013042:CDS |
| CTAGAAACACAATCAAAACT+TGG | 0.521362 | 3.3:+83588094 | None:intergenic |
| AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 3.3:+83586889 | None:intergenic |
| ATATGGTGGTGGTGGTTCGG+TGG | 0.533539 | 3.3:-83588026 | MS.gene013042:CDS |
| TGAACCACCACCACCAGCAT+TGG | 0.536808 | 3.3:+83586042 | None:intergenic |
| AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 3.3:-83587804 | MS.gene013042:intron |
| ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 3.3:+83587114 | None:intergenic |
| CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 3.3:-83587814 | MS.gene013042:CDS |
| TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 3.3:-83586937 | MS.gene013042:CDS |
| GATGATGGTGAATATGGTGG+TGG | 0.549715 | 3.3:-83588037 | MS.gene013042:CDS |
| CAGGGAATTCATACACAGAA+AGG | 0.549830 | 3.3:+83587305 | None:intergenic |
| AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 3.3:-83586106 | MS.gene013042:CDS |
| AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 3.3:-83587884 | MS.gene013042:CDS |
| ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 3.3:-83586622 | MS.gene013042:CDS |
| ATGACCCAACAACGTTATGA+TGG | 0.554188 | 3.3:-83587962 | MS.gene013042:CDS |
| TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 3.3:-83586107 | MS.gene013042:CDS |
| TATCTTCTTCAGTGCAAAGA+AGG | 0.566069 | 3.3:+83588071 | None:intergenic |
| TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 3.3:-83586098 | MS.gene013042:CDS |
| CTTATATCAAGCACCATCAA+AGG | 0.583083 | 3.3:-83586809 | MS.gene013042:intron |
| TCGTTGAACAGTGTGTTCAC+TGG | 0.588923 | 3.3:-83586157 | MS.gene013042:CDS |
| AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 3.3:+83587923 | None:intergenic |
| GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 3.3:-83586152 | MS.gene013042:CDS |
| TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 3.3:+83586110 | None:intergenic |
| ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 3.3:-83587148 | MS.gene013042:CDS |
| AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 3.3:+83587108 | None:intergenic |
| CTATTCAAATAATCAGCACC+AGG | 0.612948 | 3.3:+83587866 | None:intergenic |
| ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 3.3:-83586856 | MS.gene013042:CDS |
| TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 3.3:-83588014 | MS.gene013042:CDS |
| GATGACACCAATGCTGGTGG+TGG | 0.635406 | 3.3:-83586049 | MS.gene013042:CDS |
| AAAAGTGATGACACCAATGC+TGG | 0.640482 | 3.3:-83586055 | MS.gene013042:CDS |
| ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 3.3:+83587346 | None:intergenic |
| TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 3.3:-83586604 | MS.gene013042:CDS |
| AGGAAGCTAAACAAAGCCTG+TGG | 0.672496 | 3.3:-83585980 | MS.gene013042:CDS |
| GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 3.3:-83586000 | MS.gene013042:CDS |
| AGTGATGACACCAATGCTGG+TGG | 0.729525 | 3.3:-83586052 | MS.gene013042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTGATTAATTTTGA+TGG | - | chr3.3:83587378-83587397 | MS.gene013042:intron | 15.0% |
| !!! | TTTTTATGAAATCTTTTTGA+CGG | - | chr3.3:83586343-83586362 | MS.gene013042:intron | 15.0% |
| !! | AATACATAGAAAAGGTAAAA+TGG | - | chr3.3:83587528-83587547 | MS.gene013042:intron | 20.0% |
| !! | TATTAACAATGTGTTAATTG+TGG | - | chr3.3:83587836-83587855 | MS.gene013042:CDS | 20.0% |
| !! | TTATCTATCCATTAATTACT+TGG | - | chr3.3:83586729-83586748 | MS.gene013042:intron | 20.0% |
| !!! | CAATTTTCTTTGTGATTTAT+AGG | - | chr3.3:83586672-83586691 | MS.gene013042:intron | 20.0% |
| !!! | TTAATTTTTCATCAAAACAG+TGG | - | chr3.3:83586392-83586411 | MS.gene013042:intron | 20.0% |
| !!! | TTTTATGAAATCTTTTTGAC+GGG | - | chr3.3:83586344-83586363 | MS.gene013042:intron | 20.0% |
| ! | AGTGAAAACAATCATGAATT+AGG | - | chr3.3:83587351-83587370 | MS.gene013042:CDS | 25.0% |
| ! | ATTATTGAAGTGTGTTGAAA+AGG | - | chr3.3:83587873-83587892 | MS.gene013042:CDS | 25.0% |
| ! | ATTGTGATATGTATCCATAA+AGG | + | chr3.3:83586462-83586481 | None:intergenic | 25.0% |
| ! | CATCATCATTAATCTTAGAA+AGG | + | chr3.3:83587194-83587213 | None:intergenic | 25.0% |
| ! | CTCATATAACAACTTAAACA+AGG | - | chr3.3:83587713-83587732 | MS.gene013042:intron | 25.0% |
| ! | GAAGTTCAACACAAAAAAAT+AGG | - | chr3.3:83586800-83586819 | MS.gene013042:intron | 25.0% |
| ! | TCGTTATTCATTAACTTACA+GGG | + | chr3.3:83586780-83586799 | None:intergenic | 25.0% |
| ! | TCTGATTCAATACATAGAAA+AGG | - | chr3.3:83587520-83587539 | MS.gene013042:intron | 25.0% |
| ! | TTATGTTTCCAATTTCAGAA+GGG | - | chr3.3:83586854-83586873 | MS.gene013042:CDS | 25.0% |
| ! | TTGTGATATGTATCCATAAA+GGG | + | chr3.3:83586461-83586480 | None:intergenic | 25.0% |
| ! | TTTAATGAACTATCCCTTTA+TGG | - | chr3.3:83586445-83586464 | MS.gene013042:intron | 25.0% |
| !! | ATATTGATTGTGAAAACTGA+AGG | - | chr3.3:83586307-83586326 | MS.gene013042:intron | 25.0% |
| !! | TACATTGTTTTCTTGTCATT+TGG | + | chr3.3:83587563-83587582 | None:intergenic | 25.0% |
| AAACATTCAATGAAGGAGAA+TGG | + | chr3.3:83587171-83587190 | None:intergenic | 30.0% | |
| AAACATTTAGGTACCTTTGA+TGG | + | chr3.3:83587271-83587290 | None:intergenic | 30.0% | |
| AACTTGTCAATTTCAATGCT+TGG | - | chr3.3:83586982-83587001 | MS.gene013042:CDS | 30.0% | |
| ACATAGAAAAGGTAAAATGG+TGG | - | chr3.3:83587531-83587550 | MS.gene013042:intron | 30.0% | |
| AGAAAGGAAACATTCAATGA+AGG | + | chr3.3:83587178-83587197 | None:intergenic | 30.0% | |
| ATGATGATAAGAGTTCATCA+AGG | - | chr3.3:83587208-83587227 | MS.gene013042:intron | 30.0% | |
| CTAGAAACACAATCAAAACT+TGG | + | chr3.3:83585973-83585992 | None:intergenic | 30.0% | |
| CTCGTTATTCATTAACTTAC+AGG | + | chr3.3:83586781-83586800 | None:intergenic | 30.0% | |
| GAATCGATCCAAGTAATTAA+TGG | + | chr3.3:83586740-83586759 | None:intergenic | 30.0% | |
| GTGTTAATTGTGGTTATTAC+AGG | - | chr3.3:83587846-83587865 | MS.gene013042:CDS | 30.0% | |
| GTTATGTTTCCAATTTCAGA+AGG | - | chr3.3:83586853-83586872 | MS.gene013042:CDS | 30.0% | |
| TAGCACATTTGATTGATGAA+TGG | - | chr3.3:83586569-83586588 | MS.gene013042:CDS | 30.0% | |
| TATTTGAATAGGTTGCAGTT+TGG | - | chr3.3:83586210-83586229 | MS.gene013042:intron | 30.0% | |
| TCATCAATTCATCAGATACA+AGG | + | chr3.3:83586530-83586549 | None:intergenic | 30.0% | |
| TTAGTTCATACATACTCTCA+AGG | - | chr3.3:83587601-83587620 | MS.gene013042:intron | 30.0% | |
| ! | ATAGGCTTTATATTCTGCAT+TGG | - | chr3.3:83586818-83586837 | MS.gene013042:CDS | 30.0% |
| ! | ATCCATTGCTTGATAACTAT+TGG | - | chr3.3:83586499-83586518 | MS.gene013042:intron | 30.0% |
| ! | ATTTTTCATCAAAACAGTGG+CGG | - | chr3.3:83586395-83586414 | MS.gene013042:intron | 30.0% |
| ! | TGATGAATTGATGACTTGAA+TGG | - | chr3.3:83586536-83586555 | MS.gene013042:intron | 30.0% |
| ! | TTTAGCTTCAAACACAAACT+TGG | + | chr3.3:83587085-83587104 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGATTGAGAT+TGG | - | chr3.3:83586580-83586599 | MS.gene013042:CDS | 30.0% |
| !! | TGTTTTCTTGTCATTTGGAA+AGG | + | chr3.3:83587558-83587577 | None:intergenic | 30.0% |
| !!! | GTTTTTGATGATGGTGAATA+TGG | - | chr3.3:83586021-83586040 | MS.gene013042:CDS | 30.0% |
| AACACCATCATAACGTTGTT+GGG | + | chr3.3:83586109-83586128 | None:intergenic | 35.0% | |
| AGCTAAAACCATTCAGAGAA+TGG | - | chr3.3:83587098-83587117 | MS.gene013042:intron | 35.0% | |
| ATGGATAGATAAGCACAAAG+AGG | + | chr3.3:83586721-83586740 | None:intergenic | 35.0% | |
| CTAGAAATGAAGTCATCGAT+TGG | - | chr3.3:83586250-83586269 | MS.gene013042:intron | 35.0% | |
| CTATTCAAATAATCAGCACC+AGG | + | chr3.3:83586201-83586220 | None:intergenic | 35.0% | |
| CTTATATCAAGCACCATCAA+AGG | - | chr3.3:83587255-83587274 | MS.gene013042:intron | 35.0% | |
| GTCCAATAGTTATCAAGCAA+TGG | + | chr3.3:83586504-83586523 | None:intergenic | 35.0% | |
| TAAAAGCTCCATTCTCTGAA+TGG | + | chr3.3:83587109-83587128 | None:intergenic | 35.0% | |
| TATCTTCTTCAGTGCAAAGA+AGG | + | chr3.3:83585996-83586015 | None:intergenic | 35.0% | |
| TCACTTGAGCAATGAAGTTA+GGG | + | chr3.3:83587298-83587317 | None:intergenic | 35.0% | |
| TTATAGGTTCGAGCACATTT+CGG | - | chr3.3:83586688-83586707 | MS.gene013042:intron | 35.0% | |
| TTCACTTGAGCAATGAAGTT+AGG | + | chr3.3:83587299-83587318 | None:intergenic | 35.0% | |
| TTTGCTACCATCAATTGCTT+GGG | + | chr3.3:83587489-83587508 | None:intergenic | 35.0% | |
| ! | AGTCATCGATTGGATTCAAA+AGG | - | chr3.3:83586260-83586279 | MS.gene013042:intron | 35.0% |
| ! | ATGATTGTTTTCACTGCAAG+GGG | + | chr3.3:83587346-83587365 | None:intergenic | 35.0% |
| ! | ATTTGCTACCATCAATTGCT+TGG | + | chr3.3:83587490-83587509 | None:intergenic | 35.0% |
| ! | CATGATTGTTTTCACTGCAA+GGG | + | chr3.3:83587347-83587366 | None:intergenic | 35.0% |
| ! | GAGATTGGATTAGATTGGAT+TGG | - | chr3.3:83586595-83586614 | MS.gene013042:CDS | 35.0% |
| ! | GGATTGAGATTGGATTAGAT+TGG | - | chr3.3:83586590-83586609 | MS.gene013042:CDS | 35.0% |
| ! | GTTTGGAGATTTGGATTTTC+AGG | - | chr3.3:83586227-83586246 | MS.gene013042:intron | 35.0% |
| ! | TCATGATTGTTTTCACTGCA+AGG | + | chr3.3:83587348-83587367 | None:intergenic | 35.0% |
| !! | CTGGTGCTGATTATTTGAAT+AGG | - | chr3.3:83586199-83586218 | MS.gene013042:CDS | 35.0% |
| !! | GATAGCAGTGTTTTTGATGA+TGG | - | chr3.3:83586012-83586031 | MS.gene013042:CDS | 35.0% |
| !! | TTTGATGATGGTGAATATGG+TGG | - | chr3.3:83586024-83586043 | MS.gene013042:CDS | 35.0% |
| !!! | CGTTTTAATTGGGTTTGGAT+TGG | - | chr3.3:83586421-83586440 | MS.gene013042:intron | 35.0% |
| AAAAGTGATGACACCAATGC+TGG | - | chr3.3:83588009-83588028 | MS.gene013042:CDS | 40.0% | |
| AAACACTCTTCACTCTGCAA+TGG | + | chr3.3:83586144-83586163 | None:intergenic | 40.0% | |
| AATCCTACCTGCAAATCAAG+AGG | + | chr3.3:83586959-83586978 | None:intergenic | 40.0% | |
| AATGTATCCAACACACCCAT+TGG | + | chr3.3:83587976-83587995 | None:intergenic | 40.0% | |
| AATTTCAGAAGGGAAGAGCT+TGG | - | chr3.3:83586864-83586883 | MS.gene013042:CDS | 40.0% | |
| AGCTTGGACAATGCAATTGT+TGG | - | chr3.3:83586880-83586899 | MS.gene013042:CDS | 40.0% | |
| AGTTAGGGAGGGAAACATTT+AGG | + | chr3.3:83587283-83587302 | None:intergenic | 40.0% | |
| ATCTTTGGCAGCTAAAGTAG+AGG | - | chr3.3:83586916-83586935 | MS.gene013042:CDS | 40.0% | |
| ATGACCCAACAACGTTATGA+TGG | - | chr3.3:83586102-83586121 | MS.gene013042:CDS | 40.0% | |
| ATGTATCCAACACACCCATT+GGG | + | chr3.3:83587975-83587994 | None:intergenic | 40.0% | |
| CAGGGAATTCATACACAGAA+AGG | + | chr3.3:83586762-83586781 | None:intergenic | 40.0% | |
| GAACACCATCATAACGTTGT+TGG | + | chr3.3:83586110-83586129 | None:intergenic | 40.0% | |
| TAGGTTGCAGTTTGGAGATT+TGG | - | chr3.3:83586218-83586237 | MS.gene013042:intron | 40.0% | |
| TAGTACTCAGCACATTGAAG+TGG | - | chr3.3:83587127-83587146 | MS.gene013042:CDS | 40.0% | |
| TTGAGCAATGAAGTTAGGGA+GGG | + | chr3.3:83587294-83587313 | None:intergenic | 40.0% | |
| ! | TGATGGTGTGAATTCAATGC+AGG | - | chr3.3:83587395-83587414 | MS.gene013042:intron | 40.0% |
| !! | AAGCTCTTCCCTTCTGAAAT+TGG | + | chr3.3:83586865-83586884 | None:intergenic | 40.0% |
| !! | AGAGTGTTTGGTTCTGATGT+TGG | - | chr3.3:83586155-83586174 | MS.gene013042:CDS | 40.0% |
| !! | ATTGCAGAGTGAAGAGTGTT+TGG | - | chr3.3:83586143-83586162 | MS.gene013042:CDS | 40.0% |
| !! | CTTGATTTGCAGGTAGGATT+TGG | - | chr3.3:83586959-83586978 | MS.gene013042:CDS | 40.0% |
| !! | GTCGATTTTTGTGTGCAGAT+TGG | - | chr3.3:83587054-83587073 | MS.gene013042:intron | 40.0% |
| !! | TGGAAAAAGAGTGTCAGCAA+TGG | - | chr3.3:83586175-83586194 | MS.gene013042:CDS | 40.0% |
| AGGAAGCTAAACAAAGCCTG+TGG | - | chr3.3:83588084-83588103 | MS.gene013042:CDS | 45.0% | |
| CAATGCAGGTCTTGACTTCT+TGG | - | chr3.3:83587409-83587428 | MS.gene013042:intron | 45.0% | |
| CACTGTTCAACGACATCTCT+TGG | + | chr3.3:83587900-83587919 | None:intergenic | 45.0% | |
| CTTGAGCAATGAAGTTAGGG+AGG | + | chr3.3:83587295-83587314 | None:intergenic | 45.0% | |
| GTAGTAGCCCAGATGCTAAA+AGG | - | chr3.3:83588061-83588080 | MS.gene013042:CDS | 45.0% | |
| TCGTTGAACAGTGTGTTCAC+TGG | - | chr3.3:83587907-83587926 | MS.gene013042:CDS | 45.0% | |
| TTTCATCAAAACAGTGGCGG+CGG | - | chr3.3:83586398-83586417 | MS.gene013042:intron | 45.0% | |
| ! | AGCTTCCTCCTTTTAGCATC+TGG | + | chr3.3:83588072-83588091 | None:intergenic | 45.0% |
| ! | CTACAAAAGCTCTGATCCAC+AGG | + | chr3.3:83588103-83588122 | None:intergenic | 45.0% |
| ! | CTGTGGCAACATGTGTTGTT+GGG | - | chr3.3:83587459-83587478 | MS.gene013042:intron | 45.0% |
| ! | GATGATGGTGAATATGGTGG+TGG | - | chr3.3:83586027-83586046 | MS.gene013042:CDS | 45.0% |
| ! | GCTTCCTCCTTTTAGCATCT+GGG | + | chr3.3:83588071-83588090 | None:intergenic | 45.0% |
| ! | GTTCGAGCACATTTCGGTTT+TGG | - | chr3.3:83586694-83586713 | MS.gene013042:intron | 45.0% |
| ! | TGTGGCAACATGTGTTGTTG+GGG | - | chr3.3:83587460-83587479 | MS.gene013042:intron | 45.0% |
| ! | TTGTTTTCACTGCAAGGGGT+TGG | + | chr3.3:83587342-83587361 | None:intergenic | 45.0% |
| !! | GGCTGTAGCTTGCTTATCTT+TGG | - | chr3.3:83586901-83586920 | MS.gene013042:CDS | 45.0% |
| !! | TGAATATGGTGGTGGTGGTT+CGG | - | chr3.3:83586035-83586054 | MS.gene013042:CDS | 45.0% |
| AACACACCCATTGGGCTTTG+AGG | + | chr3.3:83587967-83587986 | None:intergenic | 50.0% | |
| ACAGCTGCTGCAATCTCTGA+TGG | + | chr3.3:83587443-83587462 | None:intergenic | 50.0% | |
| ACCTGCAAATCAAGAGGCTG+AGG | + | chr3.3:83586953-83586972 | None:intergenic | 50.0% | |
| ACGAGGATTTGTGGCGTTCT+AGG | - | chr3.3:83586067-83586086 | MS.gene013042:CDS | 50.0% | |
| AGTGATGACACCAATGCTGG+TGG | - | chr3.3:83588012-83588031 | MS.gene013042:CDS | 50.0% | |
| AGTGTGCCTCAAAGCCCAAT+GGG | - | chr3.3:83587958-83587977 | MS.gene013042:CDS | 50.0% | |
| ATCAGAGATTGCAGCAGCTG+TGG | - | chr3.3:83587442-83587461 | MS.gene013042:intron | 50.0% | |
| CTCTGCAATGGCAACTCATC+AGG | + | chr3.3:83586132-83586151 | None:intergenic | 50.0% | |
| GAACAGTGTGTTCACTGGCA+AGG | - | chr3.3:83587912-83587931 | MS.gene013042:CDS | 50.0% | |
| GCTGTGGCAACATGTGTTGT+TGG | - | chr3.3:83587458-83587477 | MS.gene013042:intron | 50.0% | |
| GGGGAAACCCAAGCAATTGA+TGG | - | chr3.3:83587479-83587498 | MS.gene013042:intron | 50.0% | |
| GTAGCCCAGATGCTAAAAGG+AGG | - | chr3.3:83588064-83588083 | MS.gene013042:CDS | 50.0% | |
| TAGTGTGCCTCAAAGCCCAA+TGG | - | chr3.3:83587957-83587976 | MS.gene013042:CDS | 50.0% | |
| TCAAAGCCCAATGGGTGTGT+TGG | - | chr3.3:83587966-83587985 | MS.gene013042:CDS | 50.0% | |
| ! | TGGAGGTGTACGAGGATTTG+TGG | - | chr3.3:83586058-83586077 | MS.gene013042:CDS | 50.0% |
| !! | AAAGAGTGTCAGCAATGGCC+TGG | - | chr3.3:83586180-83586199 | MS.gene013042:CDS | 50.0% |
| !! | ATTGGGCTTTGAGGCACACT+AGG | + | chr3.3:83587958-83587977 | None:intergenic | 50.0% |
| !! | CAGCCTCTTGATTTGCAGGT+AGG | - | chr3.3:83586953-83586972 | MS.gene013042:CDS | 50.0% |
| !! | GATGGTGAATATGGTGGTGG+TGG | - | chr3.3:83586030-83586049 | MS.gene013042:CDS | 50.0% |
| !! | TCCTCAGCCTCTTGATTTGC+AGG | - | chr3.3:83586949-83586968 | MS.gene013042:CDS | 50.0% |
| !! | TTGGGCTTTGAGGCACACTA+GGG | + | chr3.3:83587957-83587976 | None:intergenic | 50.0% |
| !!! | GGCGGCGTTTTAATTGGGTT+TGG | - | chr3.3:83586416-83586435 | MS.gene013042:intron | 50.0% |
| GATGACACCAATGCTGGTGG+TGG | - | chr3.3:83588015-83588034 | MS.gene013042:CDS | 55.0% | |
| TGAACCACCACCACCAGCAT+TGG | + | chr3.3:83588025-83588044 | None:intergenic | 55.0% | |
| !! | AGTGGCGGCGGCGTTTTAAT+TGG | - | chr3.3:83586410-83586429 | MS.gene013042:intron | 55.0% |
| !! | ATATGGTGGTGGTGGTTCGG+TGG | - | chr3.3:83586038-83586057 | MS.gene013042:CDS | 55.0% |
| !!! | GTGGCGGCGGCGTTTTAATT+GGG | - | chr3.3:83586411-83586430 | MS.gene013042:intron | 55.0% |
| !! | GACACCAATGCTGGTGGTGG+TGG | - | chr3.3:83588018-83588037 | MS.gene013042:CDS | 60.0% |
| !! | TGGTTCGGTGGAGGTGTACG+AGG | - | chr3.3:83586050-83586069 | MS.gene013042:CDS | 60.0% |
| !! | TGGTGGTGGTGGTTCGGTGG+AGG | - | chr3.3:83586041-83586060 | MS.gene013042:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 83585964 | 83588122 | 83585964 | ID=MS.gene013042 |
| chr3.3 | mRNA | 83585964 | 83588122 | 83585964 | ID=MS.gene013042.t1;Parent=MS.gene013042 |
| chr3.3 | exon | 83587805 | 83588122 | 83587805 | ID=MS.gene013042.t1.exon1;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83587805 | 83588122 | 83587805 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| chr3.3 | exon | 83587306 | 83587392 | 83587306 | ID=MS.gene013042.t1.exon2;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83587306 | 83587392 | 83587306 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| chr3.3 | exon | 83587116 | 83587214 | 83587116 | ID=MS.gene013042.t1.exon3;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83587116 | 83587214 | 83587116 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| chr3.3 | exon | 83586810 | 83587014 | 83586810 | ID=MS.gene013042.t1.exon4;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83586810 | 83587014 | 83586810 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| chr3.3 | exon | 83586545 | 83586669 | 83586545 | ID=MS.gene013042.t1.exon5;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83586545 | 83586669 | 83586545 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| chr3.3 | exon | 83585964 | 83586218 | 83585964 | ID=MS.gene013042.t1.exon6;Parent=MS.gene013042.t1 |
| chr3.3 | CDS | 83585964 | 83586218 | 83585964 | ID=cds.MS.gene013042.t1;Parent=MS.gene013042.t1 |
| Gene Sequence |
| Protein sequence |
