Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065674.t1 | CAA61334.1 | 98.8 | 320 | 4 | 0 | 5 | 324 | 67 | 386 | 3.00E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065674.t1 | P42753 | 57.0 | 272 | 97 | 5 | 17 | 277 | 63 | 325 | 1.1e-72 | 275.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065674.t1 | Q40338 | 98.8 | 320 | 4 | 0 | 5 | 324 | 67 | 386 | 2.1e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene065674 | 0.816935 | 4.28E-52 | -1.69E-46 |
| MS.gene049660 | MS.gene065674 | 0.818913 | 1.53E-52 | -1.69E-46 |
| MS.gene04985 | MS.gene065674 | 0.828433 | 9.01E-55 | -1.69E-46 |
| MS.gene049989 | MS.gene065674 | 0.823586 | 1.28E-53 | -1.69E-46 |
| MS.gene050297 | MS.gene065674 | 0.823888 | 1.09E-53 | -1.69E-46 |
| MS.gene050310 | MS.gene065674 | 0.824663 | 7.14E-54 | -1.69E-46 |
| MS.gene05054 | MS.gene065674 | 0.820387 | 7.05E-53 | -1.69E-46 |
| MS.gene050648 | MS.gene065674 | 0.810462 | 1.14E-50 | -1.69E-46 |
| MS.gene051018 | MS.gene065674 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene051067 | MS.gene065674 | 0.824073 | 9.83E-54 | -1.69E-46 |
| MS.gene051478 | MS.gene065674 | 0.818174 | 2.25E-52 | -1.69E-46 |
| MS.gene051648 | MS.gene065674 | 0.846711 | 1.83E-59 | -1.69E-46 |
| MS.gene051664 | MS.gene065674 | 0.824179 | 9.28E-54 | -1.69E-46 |
| MS.gene052150 | MS.gene065674 | 0.812072 | 5.10E-51 | -1.69E-46 |
| MS.gene052151 | MS.gene065674 | 0.827734 | 1.33E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene065674 | 0.804788 | 1.83E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene065674 | 0.859688 | 3.48E-63 | -1.69E-46 |
| MS.gene053538 | MS.gene065674 | 0.857348 | 1.74E-62 | -1.69E-46 |
| MS.gene054584 | MS.gene065674 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene054999 | MS.gene065674 | 0.836116 | 1.13E-56 | -1.69E-46 |
| MS.gene055465 | MS.gene065674 | 0.811915 | 5.51E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene065674 | 0.826259 | 2.99E-54 | -1.69E-46 |
| MS.gene055764 | MS.gene065674 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene056169 | MS.gene065674 | 0.852812 | 3.61E-61 | -1.69E-46 |
| MS.gene056228 | MS.gene065674 | 0.837022 | 6.64E-57 | -1.69E-46 |
| MS.gene057082 | MS.gene065674 | 0.821766 | 3.39E-53 | -1.69E-46 |
| MS.gene058087 | MS.gene065674 | 0.804061 | 2.59E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene065674 | 0.83502 | 2.14E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene065674 | 0.830249 | 3.27E-55 | -1.69E-46 |
| MS.gene058210 | MS.gene065674 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene058823 | MS.gene065674 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene065674 | 0.826354 | 2.84E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene065674 | 0.853756 | 1.94E-61 | -1.69E-46 |
| MS.gene059424 | MS.gene065674 | 0.848832 | 4.77E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene065674 | 0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene060492 | MS.gene065674 | 0.805028 | 1.63E-49 | -1.69E-46 |
| MS.gene06057 | MS.gene065674 | 0.862442 | 5.05E-64 | -1.69E-46 |
| MS.gene060962 | MS.gene065674 | 0.801362 | 9.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86240 | MS.gene065674 | PPI |
| MS.gene29142 | MS.gene065674 | PPI |
| MS.gene78707 | MS.gene065674 | PPI |
| MS.gene48441 | MS.gene065674 | PPI |
| MS.gene013042 | MS.gene065674 | PPI |
| MS.gene44271 | MS.gene065674 | PPI |
| MS.gene020406 | MS.gene065674 | PPI |
| MS.gene027748 | MS.gene065674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065674.t1 | MTR_1g107535 | 95.925 | 319 | 12 | 1 | 7 | 324 | 66 | 384 | 0.0 | 634 |
| MS.gene065674.t1 | MTR_4g094942 | 53.605 | 319 | 137 | 5 | 5 | 318 | 43 | 355 | 1.49e-112 | 330 |
| MS.gene065674.t1 | MTR_3g102310 | 57.190 | 306 | 116 | 8 | 5 | 303 | 47 | 344 | 4.70e-110 | 324 |
| MS.gene065674.t1 | MTR_5g032550 | 36.604 | 265 | 153 | 3 | 48 | 308 | 92 | 345 | 4.58e-47 | 162 |
| MS.gene065674.t1 | MTR_4g080990 | 33.840 | 263 | 161 | 7 | 14 | 271 | 59 | 313 | 4.37e-46 | 159 |
| MS.gene065674.t1 | MTR_3g100710 | 52.672 | 131 | 61 | 1 | 34 | 163 | 82 | 212 | 1.66e-42 | 150 |
| MS.gene065674.t1 | MTR_5g032550 | 45.806 | 155 | 84 | 0 | 48 | 202 | 92 | 246 | 2.85e-41 | 145 |
| MS.gene065674.t1 | MTR_5g035360 | 38.839 | 224 | 126 | 2 | 36 | 250 | 56 | 277 | 2.09e-39 | 142 |
| MS.gene065674.t1 | MTR_8g063120 | 37.736 | 212 | 130 | 1 | 45 | 256 | 91 | 300 | 1.18e-38 | 140 |
| MS.gene065674.t1 | MTR_8g063120 | 43.137 | 153 | 87 | 0 | 45 | 197 | 91 | 243 | 7.29e-36 | 131 |
| MS.gene065674.t1 | MTR_5g065830 | 31.890 | 254 | 164 | 3 | 46 | 294 | 86 | 335 | 1.39e-33 | 127 |
| MS.gene065674.t1 | MTR_8g068950 | 33.047 | 233 | 136 | 6 | 48 | 270 | 108 | 330 | 1.91e-29 | 116 |
| MS.gene065674.t1 | MTR_3g103080 | 40.523 | 153 | 87 | 2 | 12 | 164 | 34 | 182 | 6.63e-29 | 113 |
| MS.gene065674.t1 | MTR_5g015670 | 33.168 | 202 | 124 | 5 | 44 | 242 | 99 | 292 | 8.58e-29 | 114 |
| MS.gene065674.t1 | MTR_3g100710 | 58.974 | 78 | 32 | 0 | 86 | 163 | 106 | 183 | 4.64e-25 | 103 |
| MS.gene065674.t1 | MTR_2g011500 | 33.121 | 157 | 99 | 2 | 50 | 206 | 86 | 236 | 7.94e-23 | 96.7 |
| MS.gene065674.t1 | MTR_2g089490 | 29.719 | 249 | 152 | 8 | 63 | 299 | 64 | 301 | 4.23e-22 | 94.7 |
| MS.gene065674.t1 | MTR_2g089490 | 30.120 | 249 | 148 | 8 | 63 | 299 | 64 | 298 | 5.68e-22 | 94.4 |
| MS.gene065674.t1 | MTR_4g095790 | 28.632 | 234 | 161 | 6 | 11 | 240 | 31 | 262 | 6.58e-14 | 71.6 |
| MS.gene065674.t1 | MTR_3g102530 | 33.121 | 157 | 94 | 6 | 52 | 204 | 124 | 273 | 1.15e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065674.t1 | AT4G34160 | 60.996 | 241 | 85 | 2 | 5 | 245 | 51 | 282 | 5.35e-98 | 294 |
| MS.gene065674.t1 | AT5G67260 | 48.726 | 314 | 142 | 6 | 13 | 320 | 65 | 365 | 1.76e-92 | 280 |
| MS.gene065674.t1 | AT5G67260 | 49.673 | 306 | 135 | 6 | 13 | 312 | 65 | 357 | 2.92e-90 | 275 |
| MS.gene065674.t1 | AT3G50070 | 45.538 | 325 | 163 | 5 | 1 | 321 | 45 | 359 | 1.61e-87 | 267 |
| MS.gene065674.t1 | AT2G22490 | 35.931 | 231 | 135 | 3 | 48 | 270 | 97 | 322 | 7.09e-44 | 154 |
| MS.gene065674.t1 | AT2G22490 | 35.776 | 232 | 135 | 4 | 48 | 270 | 97 | 323 | 4.24e-42 | 149 |
| MS.gene065674.t1 | AT1G70210 | 37.931 | 203 | 126 | 0 | 48 | 250 | 82 | 284 | 3.15e-40 | 144 |
| MS.gene065674.t1 | AT5G65420 | 48.718 | 117 | 60 | 0 | 48 | 164 | 78 | 194 | 1.79e-35 | 130 |
| MS.gene065674.t1 | AT5G65420 | 49.138 | 116 | 59 | 0 | 48 | 163 | 78 | 193 | 1.85e-35 | 129 |
| MS.gene065674.t1 | AT5G65420 | 49.138 | 116 | 59 | 0 | 48 | 163 | 78 | 193 | 4.38e-35 | 129 |
| MS.gene065674.t1 | AT5G65420 | 45.238 | 126 | 59 | 1 | 48 | 163 | 78 | 203 | 6.99e-33 | 124 |
| MS.gene065674.t1 | AT5G10440 | 39.024 | 164 | 99 | 1 | 1 | 163 | 21 | 184 | 3.52e-30 | 114 |
| MS.gene065674.t1 | AT5G10440 | 35.096 | 208 | 133 | 2 | 1 | 206 | 21 | 228 | 6.45e-30 | 115 |
| MS.gene065674.t1 | AT4G03270 | 30.822 | 292 | 174 | 10 | 8 | 287 | 15 | 290 | 2.06e-24 | 101 |
| MS.gene065674.t1 | AT4G03270 | 30.822 | 292 | 173 | 11 | 8 | 287 | 15 | 289 | 1.14e-22 | 96.3 |
| MS.gene065674.t1 | AT4G37630 | 36.806 | 144 | 82 | 3 | 29 | 164 | 45 | 187 | 1.58e-21 | 92.4 |
| MS.gene065674.t1 | AT4G37630 | 36.986 | 146 | 81 | 4 | 29 | 164 | 45 | 189 | 5.58e-21 | 90.9 |
| MS.gene065674.t1 | AT4G37630 | 36.986 | 146 | 81 | 4 | 29 | 164 | 45 | 189 | 1.51e-20 | 90.9 |
| MS.gene065674.t1 | AT5G02110 | 25.180 | 278 | 186 | 8 | 44 | 315 | 74 | 335 | 2.76e-20 | 90.5 |
| MS.gene065674.t1 | AT5G02110 | 25.541 | 231 | 150 | 8 | 91 | 315 | 92 | 306 | 1.04e-15 | 77.0 |
Find 42 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAAGTCAATGCTCATTA+TGG | 0.232843 | 1.4:-82976264 | MS.gene065674:CDS |
| ATCTTCATTGGGAGTTTCTT+AGG | 0.261503 | 1.4:-82975852 | MS.gene065674:CDS |
| TGAATTTGTCACCGATTAAC+AGG | 0.270558 | 1.4:-82975033 | MS.gene065674:CDS |
| GATTGAAAACTAATCTTCAT+TGG | 0.293518 | 1.4:-82975864 | MS.gene065674:CDS |
| CTTACAAATGCAAATAATTA+TGG | 0.328803 | 1.4:-82975214 | MS.gene065674:CDS |
| TTGCTGTTAACTATCTTGAT+AGG | 0.355913 | 1.4:-82976218 | MS.gene065674:CDS |
| TTTATAGATTCAAGATTTGT+TGG | 0.378968 | 1.4:-82975628 | MS.gene065674:intron |
| TTCTTGTTGAGTTATCTCTT+TGG | 0.382076 | 1.4:+82976365 | None:intergenic |
| CACGTCGTGAAGCCGTTGAA+TGG | 0.426745 | 1.4:-82976290 | MS.gene065674:CDS |
| TGATTCTGTCAACACTGAAA+TGG | 0.427443 | 1.4:-82975942 | MS.gene065674:CDS |
| TTCTTGGTCTTCTTAAACAC+AGG | 0.430266 | 1.4:+82975070 | None:intergenic |
| ATTGAAAACTAATCTTCATT+GGG | 0.430502 | 1.4:-82975863 | MS.gene065674:CDS |
| TTCTAGATCACATTATAAGA+AGG | 0.447293 | 1.4:-82975891 | MS.gene065674:CDS |
| CCGACAATGACCCTGTTAAT+CGG | 0.454527 | 1.4:+82975022 | None:intergenic |
| TATCATCACTCTGTTCAATC+TGG | 0.455099 | 1.4:+82975557 | None:intergenic |
| GATCACATTATAAGAAGGCT+TGG | 0.460558 | 1.4:-82975886 | MS.gene065674:CDS |
| ATTACGCCACTTGGACTACC+AGG | 0.474746 | 1.4:+82975166 | None:intergenic |
| AGATACTAAATATGTGTTTG+AGG | 0.495892 | 1.4:-82975992 | MS.gene065674:CDS |
| GACTTTAAGCATCCATTCAA+CGG | 0.507804 | 1.4:+82976278 | None:intergenic |
| AGAAAAGAGTGTGTTGTCAC+TGG | 0.519215 | 1.4:+82975910 | None:intergenic |
| GGCAAAGACTATTCAGAGAA+TGG | 0.519295 | 1.4:-82975971 | MS.gene065674:CDS |
| ACAGCATCAATTACGCCACT+TGG | 0.527358 | 1.4:+82975157 | None:intergenic |
| CCGATTAACAGGGTCATTGT+CGG | 0.532014 | 1.4:-82975022 | MS.gene065674:CDS |
| TTTAAGAAGACCAAGAATCA+AGG | 0.533821 | 1.4:-82975064 | MS.gene065674:CDS |
| ATTGAACAGAGTGATGATAA+TGG | 0.537100 | 1.4:-82975553 | MS.gene065674:CDS |
| CTGATGGTTCTAACGATTCG+TGG | 0.539073 | 1.4:-82975126 | MS.gene065674:CDS |
| TGGTTGTGTTCCTTCTGTGT+TGG | 0.540643 | 1.4:-82975608 | MS.gene065674:CDS |
| AACATAAAACATTGTAGCAG+TGG | 0.556927 | 1.4:+82975585 | None:intergenic |
| CATTCAACGGCTTCACGACG+TGG | 0.556963 | 1.4:+82976291 | None:intergenic |
| CGAAAATATGAAGAAATCCC+TGG | 0.561909 | 1.4:-82975184 | MS.gene065674:CDS |
| CTTCTTAAACACAGGCTCTG+AGG | 0.608564 | 1.4:+82975078 | None:intergenic |
| ACTTGAAGGTCTAAGAGAAG+AGG | 0.611584 | 1.4:+82976093 | None:intergenic |
| GTAGCAGTGGCCAACACAGA+AGG | 0.618074 | 1.4:+82975598 | None:intergenic |
| TTCTAACGATTCGTGGACAG+TGG | 0.621696 | 1.4:-82975119 | MS.gene065674:CDS |
| TCTAACGATTCGTGGACAGT+GGG | 0.629045 | 1.4:-82975118 | MS.gene065674:CDS |
| GCAACAAGCTGAATCATCCA+TGG | 0.629983 | 1.4:+82976162 | None:intergenic |
| TAATGTTCTCAAAATCAGCA+AGG | 0.638487 | 1.4:-82975506 | MS.gene065674:intron |
| GAATTTGTCACCGATTAACA+GGG | 0.642593 | 1.4:-82975032 | MS.gene065674:CDS |
| TTACGCCACTTGGACTACCA+GGG | 0.660070 | 1.4:+82975167 | None:intergenic |
| GAAATCCCTGGTAGTCCAAG+TGG | 0.669163 | 1.4:-82975172 | MS.gene065674:CDS |
| ACAGAGTGATGATAATGGTG+TGG | 0.694988 | 1.4:-82975548 | MS.gene065674:CDS |
| TCAACAAGAAACATATTACG+AGG | 0.716642 | 1.4:-82976352 | MS.gene065674:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAACATAAAGTATTA+AGG | + | chr1.4:82976240-82976259 | None:intergenic | 10.0% |
| !! | AACAACAAACTATGATATAT+TGG | - | chr1.4:82975224-82975243 | MS.gene065674:CDS | 20.0% |
| !! | AATTTAATAGAACTACTCAA+TGG | - | chr1.4:82976274-82976293 | MS.gene065674:CDS | 20.0% |
| !! | ATTGAAAACTAATCTTCATT+GGG | - | chr1.4:82975827-82975846 | MS.gene065674:CDS | 20.0% |
| !! | ATTTAATAGAACTACTCAAT+GGG | - | chr1.4:82976275-82976294 | MS.gene065674:CDS | 20.0% |
| !! | CAAAAACAAACATAAGAAAA+AGG | + | chr1.4:82975667-82975686 | None:intergenic | 20.0% |
| !! | CTTACAAATGCAAATAATTA+TGG | - | chr1.4:82976476-82976495 | MS.gene065674:intron | 20.0% |
| !! | CTTTGTTCATTATAAAAAGA+AGG | + | chr1.4:82975025-82975044 | None:intergenic | 20.0% |
| !! | TTTATAGATTCAAGATTTGT+TGG | - | chr1.4:82976062-82976081 | MS.gene065674:intron | 20.0% |
| !!! | CTTATGTTTGTTTTTGTTAA+AGG | - | chr1.4:82975671-82975690 | MS.gene065674:intron | 20.0% |
| !!! | CTTCTTTTTATAATGAACAA+AGG | - | chr1.4:82975023-82975042 | MS.gene065674:CDS | 20.0% |
| ! | AGATACTAAATATGTGTTTG+AGG | - | chr1.4:82975698-82975717 | MS.gene065674:intron | 25.0% |
| ! | GATTGAAAACTAATCTTCAT+TGG | - | chr1.4:82975826-82975845 | MS.gene065674:CDS | 25.0% |
| ! | TAAACAAAAAACACATGCAA+AGG | + | chr1.4:82976417-82976436 | None:intergenic | 25.0% |
| ! | TTCTAGATCACATTATAAGA+AGG | - | chr1.4:82975799-82975818 | MS.gene065674:intron | 25.0% |
| !!! | TGAAAGAGTACTAAAAATGT+TGG | + | chr1.4:82975905-82975924 | None:intergenic | 25.0% |
| AACATAAAACATTGTAGCAG+TGG | + | chr1.4:82976108-82976127 | None:intergenic | 30.0% | |
| ACTGTGATGAAGAAGAAAAA+TGG | - | chr1.4:82975148-82975167 | MS.gene065674:CDS | 30.0% | |
| ATTGAACAGAGTGATGATAA+TGG | - | chr1.4:82976137-82976156 | MS.gene065674:CDS | 30.0% | |
| ATTTCCAAAAAGAGAAACCA+TGG | - | chr1.4:82975511-82975530 | MS.gene065674:CDS | 30.0% | |
| CTGTGATGAAGAAGAAAAAT+GGG | - | chr1.4:82975149-82975168 | MS.gene065674:CDS | 30.0% | |
| CTTAAAGTCAATGCTCATTA+TGG | - | chr1.4:82975426-82975445 | MS.gene065674:intron | 30.0% | |
| TAACAAAAGCAGAGGTAAAA+GGG | + | chr1.4:82975259-82975278 | None:intergenic | 30.0% | |
| TAATGTTCTCAAAATCAGCA+AGG | - | chr1.4:82976184-82976203 | MS.gene065674:CDS | 30.0% | |
| TCAACAAGAAACATATTACG+AGG | - | chr1.4:82975338-82975357 | MS.gene065674:intron | 30.0% | |
| TTAGAAGATAACGTACTTGA+AGG | + | chr1.4:82975614-82975633 | None:intergenic | 30.0% | |
| TTCTTGTTGAGTTATCTCTT+TGG | + | chr1.4:82975328-82975347 | None:intergenic | 30.0% | |
| TTTAAGAAGACCAAGAATCA+AGG | - | chr1.4:82976626-82976645 | MS.gene065674:intron | 30.0% | |
| ! | CATATTTTGTCCTTGATTCT+TGG | + | chr1.4:82976639-82976658 | None:intergenic | 30.0% |
| ! | CTTCTTCTATCTGTACTTTT+AGG | - | chr1.4:82975873-82975892 | MS.gene065674:CDS | 30.0% |
| ! | TTGCTGTTAACTATCTTGAT+AGG | - | chr1.4:82975472-82975491 | MS.gene065674:intron | 30.0% |
| !! | ATGGTTTCTCTTTTTGGAAA+TGG | + | chr1.4:82975512-82975531 | None:intergenic | 30.0% |
| !!! | TGCATGTGTTTTTTGTTTAC+AGG | - | chr1.4:82976418-82976437 | MS.gene065674:intron | 30.0% |
| ATCTTCATTGGGAGTTTCTT+AGG | - | chr1.4:82975838-82975857 | MS.gene065674:CDS | 35.0% | |
| ATCTTCTTCAGTGAAGAAGA+GGG | + | chr1.4:82975057-82975076 | None:intergenic | 35.0% | |
| CGAAAATATGAAGAAATCCC+TGG | - | chr1.4:82976506-82976525 | MS.gene065674:intron | 35.0% | |
| CTAACAAAAGCAGAGGTAAA+AGG | + | chr1.4:82975260-82975279 | None:intergenic | 35.0% | |
| GACTTTAAGCATCCATTCAA+CGG | + | chr1.4:82975415-82975434 | None:intergenic | 35.0% | |
| GATCACATTATAAGAAGGCT+TGG | - | chr1.4:82975804-82975823 | MS.gene065674:intron | 35.0% | |
| GCTCATACACAATACACATA+TGG | + | chr1.4:82976302-82976321 | None:intergenic | 35.0% | |
| TATCATCACTCTGTTCAATC+TGG | + | chr1.4:82976136-82976155 | None:intergenic | 35.0% | |
| TGATTCTGTCAACACTGAAA+TGG | - | chr1.4:82975748-82975767 | MS.gene065674:intron | 35.0% | |
| TTCTGTTCTAACAAAAGCAG+AGG | + | chr1.4:82975267-82975286 | None:intergenic | 35.0% | |
| ! | AAATGGGAAGATGATGATGA+AGG | - | chr1.4:82975165-82975184 | MS.gene065674:CDS | 35.0% |
| ! | AAGTGTGTTGTTGAAGTTGT+TGG | + | chr1.4:82975107-82975126 | None:intergenic | 35.0% |
| ! | GAATTTGTCACCGATTAACA+GGG | - | chr1.4:82976658-82976677 | MS.gene065674:intron | 35.0% |
| ! | TCATCCATGGTTTCTCTTTT+TGG | + | chr1.4:82975518-82975537 | None:intergenic | 35.0% |
| ! | TGAATTTGTCACCGATTAAC+AGG | - | chr1.4:82976657-82976676 | MS.gene065674:intron | 35.0% |
| ! | TTCTTGGTCTTCTTAAACAC+AGG | + | chr1.4:82976623-82976642 | None:intergenic | 35.0% |
| !!! | GATGCTGTTTTTAGTTCTGA+TGG | - | chr1.4:82976548-82976567 | MS.gene065674:intron | 35.0% |
| ACTTGAAGGTCTAAGAGAAG+AGG | + | chr1.4:82975600-82975619 | None:intergenic | 40.0% | |
| CATCTTCTTCAGTGAAGAAG+AGG | + | chr1.4:82975058-82975077 | None:intergenic | 40.0% | |
| CTCTTCTTCACTGAAGAAGA+TGG | - | chr1.4:82975056-82975075 | MS.gene065674:CDS | 40.0% | |
| GAAGGAGAAGTTGTAGATGA+AGG | - | chr1.4:82975183-82975202 | MS.gene065674:CDS | 40.0% | |
| GGCAAAGACTATTCAGAGAA+TGG | - | chr1.4:82975719-82975738 | MS.gene065674:intron | 40.0% | |
| ! | AGAAAAGAGTGTGTTGTCAC+TGG | + | chr1.4:82975783-82975802 | None:intergenic | 40.0% |
| ! | GGTGATTGTGATGATGATGA+TGG | + | chr1.4:82975086-82975105 | None:intergenic | 40.0% |
| !! | ACAGAGTGATGATAATGGTG+TGG | - | chr1.4:82976142-82976161 | MS.gene065674:CDS | 40.0% |
| ACAGCATCAATTACGCCACT+TGG | + | chr1.4:82976536-82976555 | None:intergenic | 45.0% | |
| CCGACAATGACCCTGTTAAT+CGG | + | chr1.4:82976671-82976690 | None:intergenic | 45.0% | |
| CCGATTAACAGGGTCATTGT+CGG | - | chr1.4:82976668-82976687 | MS.gene065674:intron | 45.0% | |
| CTTCTTAAACACAGGCTCTG+AGG | + | chr1.4:82976615-82976634 | None:intergenic | 45.0% | |
| GCAACAAGCTGAATCATCCA+TGG | + | chr1.4:82975531-82975550 | None:intergenic | 45.0% | |
| TCTAACGATTCGTGGACAGT+GGG | - | chr1.4:82976572-82976591 | MS.gene065674:intron | 45.0% | |
| TGGTTGTGTTCCTTCTGTGT+TGG | - | chr1.4:82976082-82976101 | MS.gene065674:intron | 45.0% | |
| TTCTAACGATTCGTGGACAG+TGG | - | chr1.4:82976571-82976590 | MS.gene065674:intron | 45.0% | |
| !! | CTGATGGTTCTAACGATTCG+TGG | - | chr1.4:82976564-82976583 | MS.gene065674:intron | 45.0% |
| ATTACGCCACTTGGACTACC+AGG | + | chr1.4:82976527-82976546 | None:intergenic | 50.0% | |
| GAAATCCCTGGTAGTCCAAG+TGG | - | chr1.4:82976518-82976537 | MS.gene065674:intron | 50.0% | |
| GCAAGGTCAGTAGTAGTAGC+TGG | - | chr1.4:82976201-82976220 | MS.gene065674:CDS | 50.0% | |
| TTACGCCACTTGGACTACCA+GGG | + | chr1.4:82976526-82976545 | None:intergenic | 50.0% | |
| ! | TCAGTGAAGAAGAGGGTGTG+TGG | + | chr1.4:82975050-82975069 | None:intergenic | 50.0% |
| CACGTCGTGAAGCCGTTGAA+TGG | - | chr1.4:82975400-82975419 | MS.gene065674:intron | 55.0% | |
| CATTCAACGGCTTCACGACG+TGG | + | chr1.4:82975402-82975421 | None:intergenic | 55.0% | |
| GTAGCAGTGGCCAACACAGA+AGG | + | chr1.4:82976095-82976114 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82974994 | 82976718 | 82974994 | ID=MS.gene065674 |
| chr1.4 | mRNA | 82974994 | 82976718 | 82974994 | ID=MS.gene065674.t1;Parent=MS.gene065674 |
| chr1.4 | exon | 82976700 | 82976718 | 82976700 | ID=MS.gene065674.t1.exon1;Parent=MS.gene065674.t1 |
| chr1.4 | CDS | 82976700 | 82976718 | 82976700 | ID=cds.MS.gene065674.t1;Parent=MS.gene065674.t1 |
| chr1.4 | exon | 82976095 | 82976432 | 82976095 | ID=MS.gene065674.t1.exon2;Parent=MS.gene065674.t1 |
| chr1.4 | CDS | 82976095 | 82976432 | 82976095 | ID=cds.MS.gene065674.t1;Parent=MS.gene065674.t1 |
| chr1.4 | exon | 82975818 | 82976019 | 82975818 | ID=MS.gene065674.t1.exon3;Parent=MS.gene065674.t1 |
| chr1.4 | CDS | 82975818 | 82976019 | 82975818 | ID=cds.MS.gene065674.t1;Parent=MS.gene065674.t1 |
| chr1.4 | exon | 82975507 | 82975643 | 82975507 | ID=MS.gene065674.t1.exon4;Parent=MS.gene065674.t1 |
| chr1.4 | CDS | 82975507 | 82975643 | 82975507 | ID=cds.MS.gene065674.t1;Parent=MS.gene065674.t1 |
| chr1.4 | exon | 82974994 | 82975272 | 82974994 | ID=MS.gene065674.t1.exon5;Parent=MS.gene065674.t1 |
| chr1.4 | CDS | 82974994 | 82975272 | 82974994 | ID=cds.MS.gene065674.t1;Parent=MS.gene065674.t1 |
| Gene Sequence |
| Protein sequence |
