Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013088.t1 | XP_024634972.1 | 92.8 | 443 | 32 | 0 | 1 | 443 | 1 | 443 | 6.30E-237 | 829.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013088.t1 | Q39048 | 41.0 | 434 | 220 | 14 | 7 | 425 | 1 | 413 | 3.3e-77 | 290.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013088.t1 | A0A396J1C8 | 92.8 | 443 | 32 | 0 | 1 | 443 | 1 | 443 | 4.6e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013088 | MS.gene08811 | PPI |
| MS.gene013088 | MS.gene09279 | PPI |
| MS.gene013088 | MS.gene08966 | PPI |
| MS.gene013088 | MS.gene023496 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013088.t1 | MTR_3g100150 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 847 |
| MS.gene013088.t1 | MTR_1g035890 | 78.539 | 438 | 89 | 2 | 1 | 436 | 1 | 435 | 0.0 | 714 |
| MS.gene013088.t1 | MTR_2g036780 | 76.749 | 443 | 97 | 3 | 1 | 440 | 1 | 440 | 0.0 | 702 |
| MS.gene013088.t1 | MTR_8g081600 | 33.088 | 272 | 164 | 7 | 163 | 428 | 1 | 260 | 4.75e-41 | 147 |
| MS.gene013088.t1 | MTR_8g081480 | 48.092 | 131 | 66 | 2 | 15 | 144 | 16 | 145 | 2.96e-32 | 120 |
| MS.gene013088.t1 | MTR_7g114960 | 25.170 | 441 | 278 | 16 | 18 | 424 | 15 | 437 | 9.85e-23 | 100 |
| MS.gene013088.t1 | MTR_1g011660 | 24.374 | 439 | 278 | 15 | 20 | 424 | 13 | 431 | 5.52e-21 | 95.1 |
| MS.gene013088.t1 | MTR_8g096530 | 27.459 | 244 | 152 | 6 | 46 | 275 | 39 | 271 | 1.55e-17 | 84.7 |
| MS.gene013088.t1 | MTR_8g079970 | 23.684 | 266 | 188 | 8 | 18 | 278 | 10 | 265 | 1.76e-15 | 78.6 |
| MS.gene013088.t1 | MTR_2g064495 | 23.022 | 278 | 182 | 9 | 17 | 278 | 8 | 269 | 1.78e-13 | 72.4 |
| MS.gene013088.t1 | MTR_4g007540 | 24.818 | 274 | 185 | 11 | 15 | 277 | 6 | 269 | 2.06e-13 | 72.0 |
| MS.gene013088.t1 | MTR_3g026950 | 26.335 | 281 | 175 | 9 | 18 | 277 | 9 | 278 | 2.17e-13 | 72.0 |
| MS.gene013088.t1 | MTR_4g127650 | 23.684 | 418 | 241 | 18 | 61 | 431 | 69 | 455 | 5.25e-13 | 70.9 |
| MS.gene013088.t1 | MTR_8g079950 | 28.049 | 164 | 110 | 4 | 18 | 177 | 10 | 169 | 6.04e-13 | 70.9 |
| MS.gene013088.t1 | MTR_2g105330 | 24.265 | 272 | 183 | 10 | 18 | 278 | 10 | 269 | 6.83e-13 | 70.5 |
| MS.gene013088.t1 | MTR_5g084850 | 25.610 | 164 | 114 | 4 | 18 | 177 | 10 | 169 | 9.81e-13 | 70.1 |
| MS.gene013088.t1 | MTR_7g086000 | 25.552 | 317 | 193 | 13 | 15 | 303 | 8 | 309 | 1.48e-12 | 69.7 |
| MS.gene013088.t1 | MTR_7g084940 | 21.900 | 379 | 244 | 17 | 5 | 352 | 10 | 367 | 1.55e-12 | 69.3 |
| MS.gene013088.t1 | MTR_4g097090 | 22.619 | 420 | 244 | 18 | 61 | 431 | 68 | 455 | 9.58e-12 | 67.0 |
| MS.gene013088.t1 | MTR_3g098980 | 25.105 | 239 | 155 | 8 | 46 | 271 | 46 | 273 | 1.14e-11 | 66.6 |
| MS.gene013088.t1 | MTR_8g075610 | 24.481 | 241 | 158 | 10 | 48 | 275 | 29 | 258 | 1.48e-11 | 66.2 |
| MS.gene013088.t1 | MTR_5g090830 | 26.180 | 233 | 154 | 6 | 54 | 275 | 55 | 280 | 1.93e-11 | 66.2 |
| MS.gene013088.t1 | MTR_5g090810 | 24.893 | 233 | 157 | 6 | 54 | 275 | 55 | 280 | 9.76e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013088.t1 | AT4G24510 | 41.014 | 434 | 220 | 14 | 7 | 425 | 1 | 413 | 4.16e-99 | 303 |
| MS.gene013088.t1 | AT4G13840 | 36.279 | 430 | 249 | 10 | 8 | 430 | 11 | 422 | 3.86e-92 | 285 |
| MS.gene013088.t1 | AT3G23840 | 36.343 | 432 | 242 | 11 | 10 | 437 | 11 | 413 | 8.95e-91 | 281 |
| MS.gene013088.t1 | AT3G48720 | 25.658 | 304 | 195 | 12 | 29 | 313 | 25 | 316 | 1.05e-14 | 76.3 |
| MS.gene013088.t1 | AT5G48930 | 22.769 | 325 | 195 | 10 | 15 | 317 | 6 | 296 | 2.39e-14 | 75.1 |
| MS.gene013088.t1 | AT2G19070 | 24.204 | 314 | 201 | 11 | 11 | 301 | 3 | 302 | 1.20e-13 | 73.2 |
| MS.gene013088.t1 | AT1G32910 | 24.439 | 401 | 244 | 15 | 60 | 421 | 59 | 439 | 6.77e-13 | 70.9 |
| MS.gene013088.t1 | AT1G27620 | 23.192 | 401 | 266 | 15 | 46 | 425 | 43 | 422 | 1.96e-12 | 69.3 |
| MS.gene013088.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 65 | 228 | 4.71e-12 | 68.2 |
| MS.gene013088.t1 | AT5G41040 | 28.902 | 173 | 108 | 5 | 46 | 212 | 49 | 212 | 5.06e-12 | 67.8 |
| MS.gene013088.t1 | AT5G63560 | 25.000 | 248 | 155 | 11 | 46 | 278 | 41 | 272 | 7.48e-12 | 67.4 |
Find 87 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATCCCATTTCCATTAAA+AGG | 0.125824 | 3.2:+83358787 | MS.gene013088:CDS |
| AATGGGTTCACTACCTAATT+TGG | 0.146863 | 3.2:+83356948 | None:intergenic |
| CTTTGTCTTGGTATTGATAT+TGG | 0.233450 | 3.2:-83358928 | None:intergenic |
| CGGTTGAAATTCTTGAAGTT+TGG | 0.237541 | 3.2:-83356981 | None:intergenic |
| TAAAGGGCAGAAACCGATTT+TGG | 0.239229 | 3.2:+83359292 | MS.gene013088:CDS |
| TTATTACCATTGTCATCTTC+TGG | 0.251400 | 3.2:-83359371 | None:intergenic |
| GATTCATACTCACATGTTTC+AGG | 0.254132 | 3.2:+83357168 | MS.gene013088:CDS |
| GGACAAATAAGAGGAGATTT+TGG | 0.254623 | 3.2:+83358990 | MS.gene013088:CDS |
| TGGGGAGGAGTTTCCAAATT+AGG | 0.268890 | 3.2:-83356961 | None:intergenic |
| TTTGGCATGTGAAGAGATTT+TGG | 0.279640 | 3.2:-83358726 | None:intergenic |
| AACTGAGGTTTAGTGAGATT+TGG | 0.304675 | 3.2:-83358744 | None:intergenic |
| AAAGTTAACATTTGTAGATT+TGG | 0.305013 | 3.2:+83359241 | MS.gene013088:CDS |
| GGTTGAAATTCTTGAAGTTT+GGG | 0.305408 | 3.2:-83356980 | None:intergenic |
| TTAGCAAATCCATGTAGTTT+AGG | 0.306387 | 3.2:-83357047 | None:intergenic |
| AAATTATTTCAGCTATGATT+TGG | 0.308886 | 3.2:+83358958 | MS.gene013088:CDS |
| GATATTGGTATTGGTTGATA+TGG | 0.311739 | 3.2:-83358913 | None:intergenic |
| CTTGGTATTGATATTGGTAT+TGG | 0.335050 | 3.2:-83358922 | None:intergenic |
| CGAGTCTTGGACTTTGTTAA+GGG | 0.335519 | 3.2:+83359483 | MS.gene013088:CDS |
| AAATCACAATTTGCCAAAAT+CGG | 0.338748 | 3.2:-83359305 | None:intergenic |
| TTCCAAACAACTTCATCATT+TGG | 0.339654 | 3.2:+83358881 | MS.gene013088:CDS |
| TTTAGAATTGAATAAGTATA+TGG | 0.345472 | 3.2:-83357091 | None:intergenic |
| CTGAGCTGGGCTCACATTCT+TGG | 0.349530 | 3.2:+83358639 | MS.gene013088:CDS |
| GAAGATGACAATGGTAATAA+TGG | 0.356828 | 3.2:+83359374 | MS.gene013088:CDS |
| CAACAACTGTTGAAGAATAT+TGG | 0.364639 | 3.2:+83358811 | MS.gene013088:CDS |
| TCGAGTCTTGGACTTTGTTA+AGG | 0.367163 | 3.2:+83359482 | MS.gene013088:CDS |
| TCTTCACCACGAGGGGTTGC+TGG | 0.369933 | 3.2:-83357009 | None:intergenic |
| GACTATCCGTGGGACTGAGC+TGG | 0.378652 | 3.2:+83358625 | MS.gene013088:CDS |
| GCTATGATTTGGAAATGTAT+AGG | 0.393101 | 3.2:+83358969 | MS.gene013088:CDS |
| TTTATGGGATAAAGATTAAA+GGG | 0.393168 | 3.2:+83359276 | MS.gene013088:CDS |
| ATACAATATTGTTCGAGTCT+TGG | 0.400828 | 3.2:+83359470 | MS.gene013088:CDS |
| GGGTGATCAAGGTGTTGTTT+TGG | 0.424320 | 3.2:+83359337 | MS.gene013088:CDS |
| TACCAAATGATGAAGTTGTT+TGG | 0.426548 | 3.2:-83358883 | None:intergenic |
| ACGAGGGGTTGCTGGAACTA+CGG | 0.428143 | 3.2:-83357001 | None:intergenic |
| GTGCTAGTTTACATTTCAGT+TGG | 0.430768 | 3.2:-83359436 | None:intergenic |
| AGGGTTAGAATATCAGAATC+AGG | 0.434770 | 3.2:+83357192 | MS.gene013088:CDS |
| CCATTGTCATCTTCTGGTCC+TGG | 0.436805 | 3.2:-83359365 | None:intergenic |
| AATGTAAACTAGCACAAGAA+TGG | 0.442197 | 3.2:+83359444 | MS.gene013088:CDS |
| TAATCCCATTTCCATTAAAA+GGG | 0.449982 | 3.2:+83358788 | MS.gene013088:CDS |
| GAAAATGAATTCCCGACAAA+TGG | 0.454250 | 3.2:+83359059 | MS.gene013088:CDS |
| CTCAACACCGAGCCATTTGT+CGG | 0.462606 | 3.2:-83359071 | None:intergenic |
| ATGGTAACAATTTCTTTACC+TGG | 0.475074 | 3.2:+83359401 | MS.gene013088:CDS |
| AGTATATGGATCGGATATAG+TGG | 0.480043 | 3.2:-83357077 | None:intergenic |
| AATTTCAAAATACTTTGTCT+TGG | 0.480369 | 3.2:-83358940 | None:intergenic |
| GCGTCGTTGCACTTGATAAA+CGG | 0.491094 | 3.2:-83357219 | None:intergenic |
| ATGTAAACTAGCACAAGAAT+GGG | 0.492269 | 3.2:+83359445 | MS.gene013088:CDS |
| TTTCGAGGTGTGGGTGATCA+AGG | 0.495403 | 3.2:+83359326 | MS.gene013088:CDS |
| CAATGGTAATAATGGAAGGA+TGG | 0.498640 | 3.2:+83359382 | MS.gene013088:CDS |
| AGTTGGTCAAGTTCTTTCCC+AGG | 0.509452 | 3.2:-83359419 | None:intergenic |
| ATCGAAACAAGTTTACCTCC+TGG | 0.511391 | 3.2:+83359098 | MS.gene013088:CDS |
| ACTATCCGTGGGACTGAGCT+GGG | 0.514770 | 3.2:+83358626 | MS.gene013088:CDS |
| CATACTCACATGTTTCAGGT+AGG | 0.517432 | 3.2:+83357172 | MS.gene013088:CDS |
| TCAACACCGAGCCATTTGTC+GGG | 0.518341 | 3.2:-83359070 | None:intergenic |
| TTTATCAAGTGCAACGACGC+GGG | 0.528936 | 3.2:+83357222 | MS.gene013088:CDS |
| TAGTTCACATTCTTCAAATG+TGG | 0.529855 | 3.2:+83358600 | MS.gene013088:intron |
| TCTGATATATTAGATTCTCC+AGG | 0.530313 | 3.2:-83359116 | None:intergenic |
| GCGAGAAAACGCTGCGTGAA+TGG | 0.530466 | 3.2:+83357268 | MS.gene013088:CDS |
| ATACTCACATGTTTCAGGTA+GGG | 0.532854 | 3.2:+83357173 | MS.gene013088:CDS |
| AATGAATGAGAATCATGCAT+TGG | 0.533438 | 3.2:+83359166 | MS.gene013088:CDS |
| GAAAACGCTGCGTGAATGGT+TGG | 0.535685 | 3.2:+83357272 | MS.gene013088:CDS |
| AGCTAGTGTGTGACTCCACT+TGG | 0.536358 | 3.2:-83358691 | None:intergenic |
| AAGTGGAGTCACACACTAGC+TGG | 0.545603 | 3.2:+83358693 | MS.gene013088:CDS |
| TGGTAACAATTTCTTTACCT+GGG | 0.546017 | 3.2:+83359402 | MS.gene013088:CDS |
| CTTGTATATGATCATGTGCT+TGG | 0.551161 | 3.2:+83357321 | MS.gene013088:CDS |
| ATAGAATTTGATAAGAACTG+AGG | 0.563805 | 3.2:-83358759 | None:intergenic |
| ATGACAATGGTAATAATGGA+AGG | 0.564844 | 3.2:+83359378 | MS.gene013088:CDS |
| ATACTTATTCAATTCTAAAG+CGG | 0.570391 | 3.2:+83357095 | MS.gene013088:CDS |
| TTCACATTCTTCAAATGTGG+AGG | 0.578555 | 3.2:+83358603 | MS.gene013088:CDS |
| GAATCAAGTAGTGGAAACAT+TGG | 0.583620 | 3.2:-83357150 | None:intergenic |
| AAATGTATAGGACAAATAAG+AGG | 0.585230 | 3.2:+83358981 | MS.gene013088:CDS |
| GTTGAAATTCTTGAAGTTTG+GGG | 0.589535 | 3.2:-83356979 | None:intergenic |
| TTATCAAGTGCAACGACGCG+GGG | 0.589797 | 3.2:+83357223 | MS.gene013088:CDS |
| TGCATATAACCTAAACTACA+TGG | 0.592000 | 3.2:+83357038 | MS.gene013088:CDS |
| GTACATATCGTCACAACCCT+AGG | 0.594537 | 3.2:-83359014 | None:intergenic |
| TGAATTCCCGACAAATGGCT+CGG | 0.606392 | 3.2:+83359064 | MS.gene013088:CDS |
| GAAATTCTTGAAGTTTGGGG+AGG | 0.607791 | 3.2:-83356976 | None:intergenic |
| GTGAGCCCAGCTCAGTCCCA+CGG | 0.619598 | 3.2:-83358631 | None:intergenic |
| CAAATGTGGAGGACTATCCG+TGG | 0.627456 | 3.2:+83358614 | MS.gene013088:CDS |
| AATTGAATAAGTATATGGAT+CGG | 0.632663 | 3.2:-83357086 | None:intergenic |
| AAATGTGGAGGACTATCCGT+GGG | 0.635013 | 3.2:+83358615 | MS.gene013088:CDS |
| TGTGAGTATGAATCAAGTAG+TGG | 0.635337 | 3.2:-83357159 | None:intergenic |
| AAAATGATGGAGGAAGGTGA+AGG | 0.654901 | 3.2:+83359191 | MS.gene013088:CDS |
| AGTAGCTACATAACTATCAG+TGG | 0.657052 | 3.2:-83358841 | None:intergenic |
| GATATATTAGATTCTCCAGG+AGG | 0.665656 | 3.2:-83359113 | None:intergenic |
| GTTTATCAAGTGCAACGACG+CGG | 0.688910 | 3.2:+83357221 | MS.gene013088:CDS |
| GTAGTTCCAGCAACCCCTCG+TGG | 0.703084 | 3.2:+83357003 | MS.gene013088:CDS |
| CCAGGACCAGAAGATGACAA+TGG | 0.706189 | 3.2:+83359365 | MS.gene013088:CDS |
| TATCAAGTGCAACGACGCGG+GGG | 0.711388 | 3.2:+83357224 | MS.gene013088:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAAAATTAGTTTTTTTTT+AGG | - | chr3.2:83357728-83357747 | None:intergenic | 10.0% |
| !!! | AATGGTTATATTTTTTTTAT+TGG | - | chr3.2:83358541-83358560 | None:intergenic | 10.0% |
| !!! | ACAAAATTAGTTTTTTTTTA+GGG | - | chr3.2:83357727-83357746 | None:intergenic | 10.0% |
| !!! | ATAAATATTACTAATTTTGT+TGG | + | chr3.2:83357696-83357715 | MS.gene013088:intron | 10.0% |
| !!! | TTATATTTTTTTTATTGGAA+CGG | - | chr3.2:83358536-83358555 | None:intergenic | 10.0% |
| !!! | TTTTATGTTTCTTTTTATTA+GGG | - | chr3.2:83357913-83357932 | None:intergenic | 10.0% |
| !!! | TTTTGTTCTAATTTAAAAAA+CGG | + | chr3.2:83357884-83357903 | MS.gene013088:intron | 10.0% |
| !!! | TTTTTATGTTTCTTTTTATT+AGG | - | chr3.2:83357914-83357933 | None:intergenic | 10.0% |
| !! | TCTCGATTATAATTTAAAAA+TGG | - | chr3.2:83357843-83357862 | None:intergenic | 15.0% |
| !! | TTTGTTCTAATTTAAAAAAC+GGG | + | chr3.2:83357885-83357904 | MS.gene013088:intron | 15.0% |
| !!! | AAAGATGATTTTATTGTTTA+TGG | + | chr3.2:83359215-83359234 | MS.gene013088:CDS | 15.0% |
| !!! | ATAAATTTTCTTTATTTGTG+TGG | + | chr3.2:83358441-83358460 | MS.gene013088:intron | 15.0% |
| !!! | ATTTTCATTTTCTTTAAATC+CGG | - | chr3.2:83358298-83358317 | None:intergenic | 15.0% |
| !!! | TTTAGAATTGAATAAGTATA+TGG | - | chr3.2:83357094-83357113 | None:intergenic | 15.0% |
| !! | AAAGTTAACATTTGTAGATT+TGG | + | chr3.2:83359241-83359260 | MS.gene013088:CDS | 20.0% |
| !! | AAATTATTTCAGCTATGATT+TGG | + | chr3.2:83358958-83358977 | MS.gene013088:CDS | 20.0% |
| !! | AATTGAATAAGTATATGGAT+CGG | - | chr3.2:83357089-83357108 | None:intergenic | 20.0% |
| !! | AATTTCAAAATACTTTGTCT+TGG | - | chr3.2:83358943-83358962 | None:intergenic | 20.0% |
| !! | ATAGTAAAATCTTACTATCA+TGG | - | chr3.2:83358370-83358389 | None:intergenic | 20.0% |
| !! | ATATCATGATCATGATATTA+AGG | + | chr3.2:83357395-83357414 | MS.gene013088:intron | 20.0% |
| !! | ATATCATTCTTATTCGATAT+TGG | - | chr3.2:83358415-83358434 | None:intergenic | 20.0% |
| !! | CCAATATATAAACATGAAAT+AGG | - | chr3.2:83357443-83357462 | None:intergenic | 20.0% |
| !! | CCTATTTCATGTTTATATAT+TGG | + | chr3.2:83357440-83357459 | MS.gene013088:intron | 20.0% |
| !! | TATATAAACATGAAATAGGT+AGG | - | chr3.2:83357439-83357458 | None:intergenic | 20.0% |
| !! | TTTATGGGATAAAGATTAAA+GGG | + | chr3.2:83359276-83359295 | MS.gene013088:CDS | 20.0% |
| !!! | AAAGCATATTTTGAAATGAA+TGG | + | chr3.2:83358470-83358489 | MS.gene013088:intron | 20.0% |
| !!! | ATACTTATTCAATTCTAAAG+CGG | + | chr3.2:83357095-83357114 | MS.gene013088:CDS | 20.0% |
| !!! | GATCGATTTTTTTTTTTACA+AGG | - | chr3.2:83358041-83358060 | None:intergenic | 20.0% |
| !!! | TATTTGAAGCATATTTATCA+TGG | + | chr3.2:83358233-83358252 | MS.gene013088:intron | 20.0% |
| !!! | TTTTATGGGATAAAGATTAA+AGG | + | chr3.2:83359275-83359294 | MS.gene013088:CDS | 20.0% |
| !!! | TTTTGGCAGTTTTTTTTTAA+TGG | + | chr3.2:83358258-83358277 | MS.gene013088:intron | 20.0% |
| !!! | TTTTTTGTTAAGTAGTTTAG+TGG | - | chr3.2:83358143-83358162 | None:intergenic | 20.0% |
| ! | AAATCACAATTTGCCAAAAT+CGG | - | chr3.2:83359308-83359327 | None:intergenic | 25.0% |
| ! | AAATGTATAGGACAAATAAG+AGG | + | chr3.2:83358981-83359000 | MS.gene013088:CDS | 25.0% |
| ! | AAGTGAAAAAAAATTACTGC+AGG | - | chr3.2:83357606-83357625 | None:intergenic | 25.0% |
| ! | AGTGAAAAAAAATTACTGCA+GGG | - | chr3.2:83357605-83357624 | None:intergenic | 25.0% |
| ! | ATAATCCCATTTCCATTAAA+AGG | + | chr3.2:83358787-83358806 | MS.gene013088:CDS | 25.0% |
| ! | ATAGAATTTGATAAGAACTG+AGG | - | chr3.2:83358762-83358781 | None:intergenic | 25.0% |
| ! | TAATCCCATTTCCATTAAAA+GGG | + | chr3.2:83358788-83358807 | MS.gene013088:CDS | 25.0% |
| ! | TTAAAATAGCTAGTGTTACA+AGG | - | chr3.2:83358195-83358214 | None:intergenic | 25.0% |
| ! | TTTGTTTGATCACGAAAATA+TGG | + | chr3.2:83358510-83358529 | MS.gene013088:intron | 25.0% |
| !! | GCATATTTATCATGGATTTT+TGG | + | chr3.2:83358241-83358260 | MS.gene013088:intron | 25.0% |
| !! | GGATAATTCTTTTCTTTTTG+AGG | - | chr3.2:83357977-83357996 | None:intergenic | 25.0% |
| !! | TGGAAGAAGCTAATTTTTAT+GGG | + | chr3.2:83359261-83359280 | MS.gene013088:CDS | 25.0% |
| !! | TTGGAAGAAGCTAATTTTTA+TGG | + | chr3.2:83359260-83359279 | MS.gene013088:CDS | 25.0% |
| AATGAATGAGAATCATGCAT+TGG | + | chr3.2:83359166-83359185 | MS.gene013088:CDS | 30.0% | |
| AATGTAAACTAGCACAAGAA+TGG | + | chr3.2:83359444-83359463 | MS.gene013088:CDS | 30.0% | |
| ATACAATATTGTTCGAGTCT+TGG | + | chr3.2:83359470-83359489 | MS.gene013088:CDS | 30.0% | |
| ATGGCTTAAATAATGTCACA+AGG | - | chr3.2:83357526-83357545 | None:intergenic | 30.0% | |
| ATGGTAACAATTTCTTTACC+TGG | + | chr3.2:83359401-83359420 | MS.gene013088:CDS | 30.0% | |
| ATGTAAACTAGCACAAGAAT+GGG | + | chr3.2:83359445-83359464 | MS.gene013088:CDS | 30.0% | |
| ATTTAAGCCATCTGTTAGTT+TGG | + | chr3.2:83357535-83357554 | MS.gene013088:intron | 30.0% | |
| CAACAACTGTTGAAGAATAT+TGG | + | chr3.2:83358811-83358830 | MS.gene013088:CDS | 30.0% | |
| GAAGATGACAATGGTAATAA+TGG | + | chr3.2:83359374-83359393 | MS.gene013088:CDS | 30.0% | |
| GGTTGAAATTCTTGAAGTTT+GGG | - | chr3.2:83356983-83357002 | None:intergenic | 30.0% | |
| GTTGAAATTCTTGAAGTTTG+GGG | - | chr3.2:83356982-83357001 | None:intergenic | 30.0% | |
| TACCAAATGATGAAGTTGTT+TGG | - | chr3.2:83358886-83358905 | None:intergenic | 30.0% | |
| TAGTTCACATTCTTCAAATG+TGG | + | chr3.2:83358600-83358619 | MS.gene013088:intron | 30.0% | |
| TCATGCATTGGAAAAAATGA+TGG | + | chr3.2:83359178-83359197 | MS.gene013088:CDS | 30.0% | |
| TCTGATATATTAGATTCTCC+AGG | - | chr3.2:83359119-83359138 | None:intergenic | 30.0% | |
| TGAATAAGTGATGTGTTTCT+TGG | - | chr3.2:83358098-83358117 | None:intergenic | 30.0% | |
| TGCATATAACCTAAACTACA+TGG | + | chr3.2:83357038-83357057 | MS.gene013088:CDS | 30.0% | |
| TGGTAACAATTTCTTTACCT+GGG | + | chr3.2:83359402-83359421 | MS.gene013088:CDS | 30.0% | |
| TTACAAGGTAACTAAGAGAT+TGG | - | chr3.2:83358026-83358045 | None:intergenic | 30.0% | |
| TTAGCAAATCCATGTAGTTT+AGG | - | chr3.2:83357050-83357069 | None:intergenic | 30.0% | |
| TTATTACCATTGTCATCTTC+TGG | - | chr3.2:83359374-83359393 | None:intergenic | 30.0% | |
| TTCCAAACAACTTCATCATT+TGG | + | chr3.2:83358881-83358900 | MS.gene013088:CDS | 30.0% | |
| ! | AGTTGCTTTGAATCAATGAA+TGG | - | chr3.2:83358559-83358578 | None:intergenic | 30.0% |
| ! | ATGACAATGGTAATAATGGA+AGG | + | chr3.2:83359378-83359397 | MS.gene013088:CDS | 30.0% |
| ! | GCTATGATTTGGAAATGTAT+AGG | + | chr3.2:83358969-83358988 | MS.gene013088:CDS | 30.0% |
| !! | AAACATTGGTGCTTTTAAGT+CGG | - | chr3.2:83357139-83357158 | None:intergenic | 30.0% |
| !! | CTTGGTATTGATATTGGTAT+TGG | - | chr3.2:83358925-83358944 | None:intergenic | 30.0% |
| !! | CTTTGTCTTGGTATTGATAT+TGG | - | chr3.2:83358931-83358950 | None:intergenic | 30.0% |
| !! | GATATTGGTATTGGTTGATA+TGG | - | chr3.2:83358916-83358935 | None:intergenic | 30.0% |
| AAAGGAGAAAAAGCAAGATC+AGG | - | chr3.2:83357348-83357367 | None:intergenic | 35.0% | |
| AACTGAGGTTTAGTGAGATT+TGG | - | chr3.2:83358747-83358766 | None:intergenic | 35.0% | |
| AATCGATCGCTTTACTCAAT+TGG | + | chr3.2:83358053-83358072 | MS.gene013088:intron | 35.0% | |
| AGGGTTAGAATATCAGAATC+AGG | + | chr3.2:83357192-83357211 | MS.gene013088:CDS | 35.0% | |
| AGTAGCTACATAACTATCAG+TGG | - | chr3.2:83358844-83358863 | None:intergenic | 35.0% | |
| AGTATATGGATCGGATATAG+TGG | - | chr3.2:83357080-83357099 | None:intergenic | 35.0% | |
| CAAGGTTAATAGTATGCACA+AGG | - | chr3.2:83357508-83357527 | None:intergenic | 35.0% | |
| CGGTTGAAATTCTTGAAGTT+TGG | - | chr3.2:83356984-83357003 | None:intergenic | 35.0% | |
| CTTGTATATGATCATGTGCT+TGG | + | chr3.2:83357321-83357340 | MS.gene013088:CDS | 35.0% | |
| GAAAATGAATTCCCGACAAA+TGG | + | chr3.2:83359059-83359078 | MS.gene013088:CDS | 35.0% | |
| GAACATCTTACATCATTCGA+AGG | + | chr3.2:83357861-83357880 | MS.gene013088:intron | 35.0% | |
| GATATATTAGATTCTCCAGG+AGG | - | chr3.2:83359116-83359135 | None:intergenic | 35.0% | |
| GATTCATACTCACATGTTTC+AGG | + | chr3.2:83357168-83357187 | MS.gene013088:CDS | 35.0% | |
| GCTAGATATTCACTCGTTTA+AGG | - | chr3.2:83358121-83358140 | None:intergenic | 35.0% | |
| GCTTAAAGCTGTTAATTGCA+AGG | - | chr3.2:83357998-83358017 | None:intergenic | 35.0% | |
| TGCATTGGAAAAAATGATGG+AGG | + | chr3.2:83359181-83359200 | MS.gene013088:CDS | 35.0% | |
| TGTGAGTATGAATCAAGTAG+TGG | - | chr3.2:83357162-83357181 | None:intergenic | 35.0% | |
| TTCACATTCTTCAAATGTGG+AGG | + | chr3.2:83358603-83358622 | MS.gene013088:CDS | 35.0% | |
| ! | AACAGTTGTTGCCCTTTTAA+TGG | - | chr3.2:83358802-83358821 | None:intergenic | 35.0% |
| ! | ATACTCACATGTTTCAGGTA+GGG | + | chr3.2:83357173-83357192 | MS.gene013088:CDS | 35.0% |
| ! | CAATGGTAATAATGGAAGGA+TGG | + | chr3.2:83359382-83359401 | MS.gene013088:CDS | 35.0% |
| ! | GAATCAAGTAGTGGAAACAT+TGG | - | chr3.2:83357153-83357172 | None:intergenic | 35.0% |
| ! | GGACAAATAAGAGGAGATTT+TGG | + | chr3.2:83358990-83359009 | MS.gene013088:CDS | 35.0% |
| ! | GGTGTTGTCAAAGTTAACTT+AGG | - | chr3.2:83357822-83357841 | None:intergenic | 35.0% |
| ! | GTGCTAGTTTACATTTCAGT+TGG | - | chr3.2:83359439-83359458 | None:intergenic | 35.0% |
| ! | GTTGCCCTTTTAATGGAAAT+GGG | - | chr3.2:83358795-83358814 | None:intergenic | 35.0% |
| ! | TGTTGCCCTTTTAATGGAAA+TGG | - | chr3.2:83358796-83358815 | None:intergenic | 35.0% |
| ! | TTGGAAAAAATGATGGAGGA+AGG | + | chr3.2:83359185-83359204 | MS.gene013088:CDS | 35.0% |
| ! | TTGGCAAATTGTGATTTTCG+AGG | + | chr3.2:83359311-83359330 | MS.gene013088:CDS | 35.0% |
| ! | TTTGGCATGTGAAGAGATTT+TGG | - | chr3.2:83358729-83358748 | None:intergenic | 35.0% |
| !! | AAAGGGCATCACAATTAACA+GGG | - | chr3.2:83358322-83358341 | None:intergenic | 35.0% |
| !! | AAATTGTGATTTTCGAGGTG+TGG | + | chr3.2:83359316-83359335 | MS.gene013088:CDS | 35.0% |
| !! | AATTGTGATTTTCGAGGTGT+GGG | + | chr3.2:83359317-83359336 | MS.gene013088:CDS | 35.0% |
| !! | CTTTTAAGTCGGATATTGAG+AGG | - | chr3.2:83357128-83357147 | None:intergenic | 35.0% |
| !! | GTTGGATGAAAAAGAGTACT+CGG | + | chr3.2:83357290-83357309 | MS.gene013088:CDS | 35.0% |
| !!! | CTTTTAACTTCATCACCAAG+TGG | + | chr3.2:83358676-83358695 | MS.gene013088:CDS | 35.0% |
| !!! | TGATCTTGCTTTTTCTCCTT+TGG | + | chr3.2:83357347-83357366 | MS.gene013088:CDS | 35.0% |
| !!! | TTCTCCTTTGGTTTTTGTCA+AGG | + | chr3.2:83357359-83357378 | MS.gene013088:CDS | 35.0% |
| AATGGAGAGACAGAGTTAAC+CGG | + | chr3.2:83358276-83358295 | MS.gene013088:intron | 40.0% | |
| ATCGAAACAAGTTTACCTCC+TGG | + | chr3.2:83359098-83359117 | MS.gene013088:CDS | 40.0% | |
| CGCTTTACTCAATTGGTAGA+GGG | + | chr3.2:83358060-83358079 | MS.gene013088:intron | 40.0% | |
| CGTACCTTGACAAAAACCAA+AGG | - | chr3.2:83357366-83357385 | None:intergenic | 40.0% | |
| GAAATTCTTGAAGTTTGGGG+AGG | - | chr3.2:83356979-83356998 | None:intergenic | 40.0% | |
| TACTCAATTGGTAGAGGGTT+GGG | + | chr3.2:83358065-83358084 | MS.gene013088:intron | 40.0% | |
| TCGCTTTACTCAATTGGTAG+AGG | + | chr3.2:83358059-83358078 | MS.gene013088:intron | 40.0% | |
| TTACTCAATTGGTAGAGGGT+TGG | + | chr3.2:83358064-83358083 | MS.gene013088:intron | 40.0% | |
| ! | AAAATGATGGAGGAAGGTGA+AGG | + | chr3.2:83359191-83359210 | MS.gene013088:CDS | 40.0% |
| ! | AAGAGGAGATTTTGGACCTA+GGG | + | chr3.2:83358998-83359017 | MS.gene013088:CDS | 40.0% |
| ! | ACTATTTTCTTCACCACGAG+GGG | - | chr3.2:83357019-83357038 | None:intergenic | 40.0% |
| ! | AGCCATCTGTTAGTTTGGTT+TGG | + | chr3.2:83357540-83357559 | MS.gene013088:intron | 40.0% |
| ! | CACTATTTTCTTCACCACGA+GGG | - | chr3.2:83357020-83357039 | None:intergenic | 40.0% |
| ! | CATACTCACATGTTTCAGGT+AGG | + | chr3.2:83357172-83357191 | MS.gene013088:CDS | 40.0% |
| ! | GCCATCTGTTAGTTTGGTTT+GGG | + | chr3.2:83357541-83357560 | MS.gene013088:intron | 40.0% |
| ! | TAAGAGGAGATTTTGGACCT+AGG | + | chr3.2:83358997-83359016 | MS.gene013088:CDS | 40.0% |
| !! | CAAAGGGCATCACAATTAAC+AGG | - | chr3.2:83358323-83358342 | None:intergenic | 40.0% |
| !! | CCATCTGTTAGTTTGGTTTG+GGG | + | chr3.2:83357542-83357561 | MS.gene013088:intron | 40.0% |
| !! | TAAAGGGCAGAAACCGATTT+TGG | + | chr3.2:83359292-83359311 | MS.gene013088:CDS | 40.0% |
| AAATGTGGAGGACTATCCGT+GGG | + | chr3.2:83358615-83358634 | MS.gene013088:CDS | 45.0% | |
| AGTTGGTCAAGTTCTTTCCC+AGG | - | chr3.2:83359422-83359441 | None:intergenic | 45.0% | |
| CCCCAAACCAAACTAACAGA+TGG | - | chr3.2:83357545-83357564 | None:intergenic | 45.0% | |
| GCGTCGTTGCACTTGATAAA+CGG | - | chr3.2:83357222-83357241 | None:intergenic | 45.0% | |
| GTACATATCGTCACAACCCT+AGG | - | chr3.2:83359017-83359036 | None:intergenic | 45.0% | |
| GTTTATCAAGTGCAACGACG+CGG | + | chr3.2:83357221-83357240 | MS.gene013088:CDS | 45.0% | |
| TGAATTCCCGACAAATGGCT+CGG | + | chr3.2:83359064-83359083 | MS.gene013088:CDS | 45.0% | |
| TGGGGAGGAGTTTCCAAATT+AGG | - | chr3.2:83356964-83356983 | None:intergenic | 45.0% | |
| TTTATCAAGTGCAACGACGC+GGG | + | chr3.2:83357222-83357241 | MS.gene013088:CDS | 45.0% | |
| ! | GCACTATTTTCTTCACCACG+AGG | - | chr3.2:83357021-83357040 | None:intergenic | 45.0% |
| ! | GGCATGTGAAGAGATTTTGG+TGG | - | chr3.2:83358726-83358745 | None:intergenic | 45.0% |
| !!! | GGGTGATCAAGGTGTTGTTT+TGG | + | chr3.2:83359337-83359356 | MS.gene013088:CDS | 45.0% |
| !!! | GGTGTTGTTTTGGTTCTTCC+AGG | + | chr3.2:83359347-83359366 | MS.gene013088:CDS | 45.0% |
| AAGTGGAGTCACACACTAGC+TGG | + | chr3.2:83358693-83358712 | MS.gene013088:CDS | 50.0% | |
| AGCTAGTGTGTGACTCCACT+TGG | - | chr3.2:83358694-83358713 | None:intergenic | 50.0% | |
| CAAATGTGGAGGACTATCCG+TGG | + | chr3.2:83358614-83358633 | MS.gene013088:CDS | 50.0% | |
| CCAGGACCAGAAGATGACAA+TGG | + | chr3.2:83359365-83359384 | MS.gene013088:CDS | 50.0% | |
| CCATTGTCATCTTCTGGTCC+TGG | - | chr3.2:83359368-83359387 | None:intergenic | 50.0% | |
| CTCAACACCGAGCCATTTGT+CGG | - | chr3.2:83359074-83359093 | None:intergenic | 50.0% | |
| GAAAACGCTGCGTGAATGGT+TGG | + | chr3.2:83357272-83357291 | MS.gene013088:CDS | 50.0% | |
| GAGGCTGCGCAAATTGCAAA+GGG | - | chr3.2:83358339-83358358 | None:intergenic | 50.0% | |
| TACTATCATGGCCACCGATG+AGG | - | chr3.2:83358358-83358377 | None:intergenic | 50.0% | |
| TCAACACCGAGCCATTTGTC+GGG | - | chr3.2:83359073-83359092 | None:intergenic | 50.0% | |
| TGAGGCTGCGCAAATTGCAA+AGG | - | chr3.2:83358340-83358359 | None:intergenic | 50.0% | |
| TGCAATTTGCGCAGCCTCAT+CGG | + | chr3.2:83358341-83358360 | MS.gene013088:intron | 50.0% | |
| TTATCAAGTGCAACGACGCG+GGG | + | chr3.2:83357223-83357242 | MS.gene013088:CDS | 50.0% | |
| TTTCGAGGTGTGGGTGATCA+AGG | + | chr3.2:83359326-83359345 | MS.gene013088:CDS | 50.0% | |
| AATTTGCGCAGCCTCATCGG+TGG | + | chr3.2:83358344-83358363 | MS.gene013088:intron | 55.0% | |
| ACGAGGGGTTGCTGGAACTA+CGG | - | chr3.2:83357004-83357023 | None:intergenic | 55.0% | |
| ACTATCCGTGGGACTGAGCT+GGG | + | chr3.2:83358626-83358645 | MS.gene013088:CDS | 55.0% | |
| CTGAGCTGGGCTCACATTCT+TGG | + | chr3.2:83358639-83358658 | MS.gene013088:CDS | 55.0% | |
| GCGAGAAAACGCTGCGTGAA+TGG | + | chr3.2:83357268-83357287 | MS.gene013088:CDS | 55.0% | |
| TATCAAGTGCAACGACGCGG+GGG | + | chr3.2:83357224-83357243 | MS.gene013088:CDS | 55.0% | |
| GACTATCCGTGGGACTGAGC+TGG | + | chr3.2:83358625-83358644 | MS.gene013088:CDS | 60.0% | |
| GTAGTTCCAGCAACCCCTCG+TGG | + | chr3.2:83357003-83357022 | MS.gene013088:CDS | 60.0% | |
| TCTTCACCACGAGGGGTTGC+TGG | - | chr3.2:83357012-83357031 | None:intergenic | 60.0% | |
| GTGAGCCCAGCTCAGTCCCA+CGG | - | chr3.2:83358634-83358653 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 83356949 | 83359502 | 83356949 | ID=MS.gene013088 |
| chr3.2 | mRNA | 83356949 | 83359502 | 83356949 | ID=MS.gene013088.t1;Parent=MS.gene013088 |
| chr3.2 | exon | 83356949 | 83357380 | 83356949 | ID=MS.gene013088.t1.exon1;Parent=MS.gene013088.t1 |
| chr3.2 | CDS | 83356949 | 83357380 | 83356949 | ID=cds.MS.gene013088.t1;Parent=MS.gene013088.t1 |
| chr3.2 | exon | 83358603 | 83359502 | 83358603 | ID=MS.gene013088.t1.exon2;Parent=MS.gene013088.t1 |
| chr3.2 | CDS | 83358603 | 83359502 | 83358603 | ID=cds.MS.gene013088.t1;Parent=MS.gene013088.t1 |
| Gene Sequence |
| Protein sequence |
