AlfalfaGEDB | MS.gene08811

M. sativa cultivar XinJiangDaYe / MS.gene08811

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08811.t1	XP_003629600.2	95.2	434	21	0	1	434	1	434	7.30E-246	859.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08811.t1	Q9LIS1	42.7	429	225	10	5	429	5	416	1.4e-91	338.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08811.t1	A0A396GN49	95.2	434	21	0	1	434	1	434	5.3e-246	859.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050581	MS.gene08811	0.801571	8.46E-49	-1.69E-46
MS.gene054010	MS.gene08811	0.805213	1.49E-49	-1.69E-46
MS.gene054013	MS.gene08811	0.802275	6.06E-49	-1.69E-46
MS.gene056902	MS.gene08811	0.803533	3.33E-49	-1.69E-46
MS.gene059974	MS.gene08811	0.822219	2.66E-53	-1.69E-46
MS.gene060005	MS.gene08811	0.815602	8.50E-52	-1.69E-46
MS.gene060799	MS.gene08811	0.825319	5.00E-54	-1.69E-46
MS.gene060800	MS.gene08811	0.853646	2.08E-61	-1.69E-46
MS.gene060801	MS.gene08811	0.848401	6.28E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013088	MS.gene08811	PPI
MS.gene08811	MS.gene060401	PPI
MS.gene08811	MS.gene020442	PPI
MS.gene08811	MS.gene73339	PPI
MS.gene08811	MS.gene37919	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08811.t1	MTR_8g081600	94.465	271	15	0	164	434	1	271	0.0	528
MS.gene08811.t1	MTR_8g081480	95.890	146	6	0	1	146	1	146	1.02e-100	296
MS.gene08811.t1	MTR_2g036780	41.667	420	226	8	16	423	16	428	7.14e-100	305
MS.gene08811.t1	MTR_3g100150	38.425	419	244	8	16	424	15	429	1.45e-94	293
MS.gene08811.t1	MTR_1g035890	37.123	431	250	9	16	431	15	439	8.60e-90	279
MS.gene08811.t1	MTR_1g011660	25.124	402	282	9	37	419	30	431	2.01e-28	116
MS.gene08811.t1	MTR_7g114960	24.524	420	275	12	32	419	28	437	6.61e-28	115
MS.gene08811.t1	MTR_4g007540	30.964	197	116	3	1	196	10	187	2.06e-17	84.3
MS.gene08811.t1	MTR_2g064495	24.946	461	266	22	1	423	10	428	1.05e-16	82.0
MS.gene08811.t1	MTR_2g105330	31.633	196	113	7	8	196	6	187	3.07e-16	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08811.t1	AT3G23840	42.494	433	228	10	1	429	1	416	7.60e-107	322
MS.gene08811.t1	AT4G13840	39.019	428	250	6	5	429	7	426	3.70e-105	318
MS.gene08811.t1	AT4G24510	34.499	429	250	11	10	423	4	416	2.87e-84	265
MS.gene08811.t1	AT2G19070	26.392	413	250	18	38	407	29	430	1.67e-18	87.8
MS.gene08811.t1	AT4G29250	24.550	444	261	18	19	419	27	439	1.98e-17	84.7
MS.gene08811.t1	AT5G48930	24.291	247	178	4	35	274	25	269	2.97e-14	74.7
MS.gene08811.t1	AT5G41040	33.962	159	99	3	46	201	65	220	3.60e-14	74.7
MS.gene08811.t1	AT5G41040	33.962	159	99	3	46	201	49	204	3.76e-14	74.3
MS.gene08811.t1	AT5G57840	22.384	411	290	10	35	420	25	431	1.11e-13	73.2
MS.gene08811.t1	AT5G63560	30.636	173	104	5	43	199	27	199	1.54e-13	72.4

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Find 129 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAAGGGGTGTTGAGA+CGG	0.562724	4.2:+13091858	None:intergenic
AAACTTTATGTGCAATAATT+TGG	0.180735	4.2:-13091663	MS.gene08811:CDS
AAATCCGAGCTTAATGTGTA+TGG	0.468103	4.2:-13091184	MS.gene08811:CDS
AAATGACCAATTGATATGCA+AGG	0.646231	4.2:-13091548	MS.gene08811:CDS
AACAATTAAGAAAATAAAAG+AGG	0.487357	4.2:-13097439	MS.gene08811:CDS
AACTGTCACGGTTGTGGGTT+CGG	0.365252	4.2:+13091612	None:intergenic
AACTTGCAAGAACAAATTTG+GGG	0.669322	4.2:-13091715	MS.gene08811:CDS
AAGCCATTCATCTAGAGTTT+TGG	0.331771	4.2:+13097296	None:intergenic
AAGCTCTCTTTCTCTTCTTG+TGG	0.410113	4.2:+13097609	None:intergenic
AAGTGTGGTGGGATTTCATT+GGG	0.369203	4.2:-13091994	MS.gene08811:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGACCAATTGATATGCA+AGG	-	chr4.2:13097229-13097248	MS.gene08811:CDS	30.0%
AACTTACTTAATTGGATAGG+GGG	+	chr4.2:13093823-13093842	None:intergenic	30.0%
AACTTGCAAGAACAAATTTG+GGG	-	chr4.2:13097062-13097081	MS.gene08811:intron	30.0%
AAGAAATTGGTTGCAAATAC+CGG	+	chr4.2:13093790-13093809	None:intergenic	30.0%
AATAGACTCTGTAATTTGAG+TGG	+	chr4.2:13092862-13092881	None:intergenic	30.0%
ACAACTTGCAAGAACAAATT+TGG	-	chr4.2:13097060-13097079	MS.gene08811:intron	30.0%
ACATAAAGTTTCAAATGGAG+GGG	+	chr4.2:13097105-13097124	None:intergenic	30.0%
AGAAGACAGACATAAAAATG+TGG	-	chr4.2:13094637-13094656	MS.gene08811:intron	30.0%
AGAAGACCAAATCAACAAAA+TGG	-	chr4.2:13092203-13092222	MS.gene08811:intron	30.0%
AGAGTGAAAGGAAAGTTAAA+AGG	-	chr4.2:13092567-13092586	MS.gene08811:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	13091159	13097640	13091159	ID=MS.gene08811
chr4.2	mRNA	13091159	13097640	13091159	ID=MS.gene08811.t1;Parent=MS.gene08811
chr4.2	exon	13097206	13097640	13097206	ID=MS.gene08811.t1.exon1;Parent=MS.gene08811.t1
chr4.2	CDS	13097206	13097640	13097206	ID=cds.MS.gene08811.t1;Parent=MS.gene08811.t1
chr4.2	exon	13091159	13092028	13091159	ID=MS.gene08811.t1.exon2;Parent=MS.gene08811.t1
chr4.2	CDS	13091159	13092028	13091159	ID=cds.MS.gene08811.t1;Parent=MS.gene08811.t1

Gene Sequence

>MS.gene08811

ATGGTTTTCCCACAAGAAGAGAAAGAGAGCTTAGTGTACGATTTGAGAGTATCTTCAGTTGGGCCAGGTCATGCCACTGGGTCGGATGTTTTTCACAATCCGAACGGCTTGGACCTGGCCATGAAACTTCACTATCTTAAAGTGGTTTACTTCTTTGACTCTGAGGCCGCACAAGGCCTAACAATTAAGAAAATAAAAGAGGCATTGTTCAATTTGCTTGATTATTATTTCATCCCTTGCGGCCGATTCCGGCGATCGGAATCTGGTCGACCCTTCGTCAAGTGCAATGATTGTGGAGCAAGAACCATTGAGGCCAATTGCACCAAAACTCTAGATGAATGGCTTGCTATGATGGATTGGCCTTCCTACAAGTTGCTCGTTTCTCAACAAGTCATTGGGCCAGAATTATCATTTTCTCCTTCCATTTTGTTGCAGGTTCTTTAATTTGCTAATGCATGCATGTCATATGCATCTCTCTACTCTCTTATATACTTCAACTCAAACAATTCAACAAAAAAACACTAATTAAGCGAAAGTATTTCTATCAGAGTTTTTTTGTTTTTTAATTTTTGAATTAGTAGAACAGAAGATAAAAGAGAAAATAAGTTTCAATATTTTTCGTACTCTCCTTGCCTTAGGGAGTGATATTAATTATTAGAGTTTAATGGTAGTGGGTTGACAGTCCAAAACAATTTTGCACGTACAATCAATTAAAACATTTGAATTGCTACGTAAACTAAAAATATTTATTGATGTGGTAATTTTAAATGTTTTGATTGGTTCTATGTACAAAATTGTTTTAAACTGTTAACTCACAACCATTAAACTCTTATTATTACGCGTATTCTCTCCAAAAGTGAATTTTGGTTAAAAATATGATGATATGACATGTTTTAAATAAAAATTTTAAGGAAACTTTTTTATAATTTCATGAATGTTGATATTTTTCATCATCAGATGATATGCGCATCATTTAAAACATATCACATCACCAATATTTTAGCTTAAAATATGGAGGGACCAAAACTATCAGATTTTCAAATAAGAAGACCAAATCAACAAAATGGTAACATTGGTCTTTAGAATATCTGCTAAAAAAACATTGTGTAAGCCTGTAACCAATTTGTTAGGTCATGCTAACTGCTAAAAAATTAACTTCATCGTCTTTAAGGAAAATAGTTAGTTGCTTTTAATTTGTCTATATTTTAGTAGTAATATTAATTTGCTCAACATTGTGTAAGCCTGTGACCAAAAAAACATTGTGTAAACCTAAAGCCTGTAATGCAAGGAATTGGCACTGTCACATAAAGATTGAGAGGTGTAGTTGGTTCTTTTAAATAACAGTAATGATAATCGAACACAAAAATATAGACAAATTAAATTTGTTACATATTAACCATAAAAAATGAGAGTGAAAGGAAAGTTAAAAGGGTTAATATCTCAAATTAAATTTTTAATTTGGAAGGTCAGAAAGTAGCCTCTGTAAAATAAAAATAAAAACAATAGTTTCACCTCTGTAACTTTGAATTCATTAGATTTTAACCATTTACATAAACTATTTTCAGACATTTTAACACTTTACAAGGACTATTTGTAAACTTCGTATAAATATTTTTTACAAATTCAGGGTAAAATACGAAAAATTGAAAATTACAGAGATAAAATCTATATTTTTTATTGATAGGAACTATTTTTAGACCCCACTCAAATTACAGAGTCTATTTCAAGTTTTTCAATTGATAGAATTATAAATAAATGAGATTGATTTCGACGGTTAAAATTTACAATTAAATAAATTTCAATTGAGAGAACACCCCCTTCGGTTAATAAGAGTGTAATAGCGATTTTTCTTAATTTTACATGAAATTTTTCTTAAAAAAAAAAAAATTGTATTGCAAACGTGTCAAACATCAATAAAAAGTAAATCATTTATTGGCCTTGGTTGAGACCGACCGTCAACCCAATTATTTTCCCAATCCATTTCGCTTTTTATGGTAGAAAATTCATACACATCATTTCTTTTTGTGAAATGTTAATGAGTGTCTTCCAGACATCTTTTAAGAACTTTAAATGATAAGTCTTTGTGAAAAAATTTGTATTCTAATTCAATGTATTGAAAGTGTTGCACCTCTTTAATGTAACCAAAAAAAAAAATCAATGTATTGAAAATTGAAGTTTTGACTTTTTTAAAGTAAAATTTATTAATACAGAATTCTTAAAAATTGTTTCGGACACACTCGTTAGTAAAACTCAAGAAAGAAAAATAATCCTACCATTATAGTACTACTACATTCACAATTATAGTCGACGAAGAGTTGAATGAACTTAAACCTAATTTAAAATTCAATTCAACAGTTAATTTGTTGAACTTGGTTGATGAAAAAATGATTTGCCAAAATTTAGAGTTTAAAAGTGGCAGAGTATTTTGACGATATTCCTTTTTTTTTGTGGTGGCCGGAATTCGAACTCCGGATCTTGCATATATTTTGACGATATTCCTAATTGTAGTTATGGAATTTTATTGGTTTTTATTTTGAATTTTAAACGAGTCAAACTCGACCTAAAAAAATTTCATATCAAATTTGAGAAGTTTTAAATTGAATCAAGTTCGACTCTAACACAATTTCGCCGGTATTTGCAACCAATTTCTTATTAATAGTTCCCCCTATCCAATTAAGTAAGTTCACCTAACTACTCACTGCTACTTTTAGAACACTTTAATTAATATGAATGGCTCCTTCCAAATCATACAGAAGTCATGTACAGTGTTTATGGTGTCCAACAATTTGTCATCATAGAATTAAATAGTCTCACCAAATTAAATGGTATAGTACCCTCTCCTTAAAGTTAGGAGTTTCTTTCCATGTTCTCTACTTTACTACTCCCTCCTACTCTAAATAATACTCCATCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATACAATGATTAAAAGAAAGAGAATGGTTATTTTAACAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGAAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGAAAACTGAAAGTGACATTCATTTTGAAACAATTTTTTTTGCTAAAGCGACACTCATTTTGAAACGGATGGAGTAGTCGTTTAAGGTTTATACACGGGTATTAAGGAAATGATTAATTGTGTTGATTTTGATGGTAAAATTAGTATCATTTACTAAAACACCCTTATTAATTGTAGTTAGTGGAGTAGTTAAGTTGGATGAAATTCAATAAATAAGGGTATAATAATGGAAAAAAAATAATAAATGTTGCATTGGTATTCTAAAGTGACAATTATTTTGAGAAAAAGAAAAAATGGTAAAGAGACAATTATTATGAGACGGAGGGAGTATAGTTTTAAAATGAAAAATACTAAGAGTGTCTTTAGGGCATTGGTTAAGAAGACAGACATAAAAATGTGGTATTGTGAAATGGTTAAAAGTGATGGATTTTACTTTTTAAAAGTTAAAAAATGGTTGAATTCAATGCAAACTTATTATTTTTGATTTACTTAACTAGTGCTCCGGGGGCATTGGTTAGCAATACCCTTTTAAACTAAAGGAAAATGTTAACGAGTATCTTTGGGACACTCTTTAAGAACCTTTAATAGTAAGTTTTTATTAAAATTCGTGTGATTAAGAACCTTTGTTAATGAGTGTTTTCAAGAAACTCTTTAAGATCCTAAATTTAGAGATTAATCACTTGAAAAGCTAAATATTACAAATTTCAGTGCATTAAATATACAAATTTTAATAAAACTTACTATTACAGGTTCTTAAAGAGCGCCCAGAAAGAACTTGTTAACATTTTTCAAAAATTAAATCCATCAAGTATCACATTATTGTATTTATATTTTCAAAATGTTGGCAATAGAGAAAATGAAGAAAATAAAAAATGGAGAGGATCTTAAACCCCTCCATTAAGGTCAGTCCCACATTTATCAAGGTTTAAATTTTAATGATGATAGTAATAATATTTGACCTTAAAAAAAATATTATTATTATTATTATTATTATTATTATTATTATATTTGACCTTTTAAAAAAAATTGAGATGCAAAATATTTTAATTATGTTAATTAGTGTATTTTTTATATATATACTTGTGAGCATTTTATTTGTTGTACTTAAATGTTTTAATTTTTTCAGGTTAATTAATACATGAAAAACACTAATTTTTTGACAAATATAAAACACCTGTTTTAAAAACTGCCATAATTTTCTTCTAGTTTCAACCATGTTATAGCAACTAAACTAGGAACAAAATATTGTCGGTCTTTAATTATCCCAATTTGTTGCTGGTCTGTCCATCTCATGTCCAAACTTTGTTGAAATTTTGCTCTCAGTTTTGTCACCATCACTATTGACACCACTGAGATTCTTTAAATTTCTTTTAAAATATTGAGTACACAATTTTTTATAAAAACTTGTTATTTTGAAATATTAAACTTTTTTTTTTGAAGGAAAATATTAAACATATTTAGAGGGCTCATTAGCATTTCTCATATATGAATAGGAGAGAAATTAATCTTGTTTTTAAATTCTCTTTTTATTTCTCAACTTTTTTTATCTATCTATCTATATACTAAAGACGATCCTTGTCATTTTTATGAGAGATGAATTAGCTTTTATGTTATAATGAGTCATTGATTAATATAGAGATTATTTTCAGTATTATTTTTGTTATAATTGAATTAGATGGCTAACAAGTTGCTGGAAAACTTTGATCAACCGTACTTATGTACATCTTATCCTCTCTTTTTTGTCTTTTTGTGCATGAGAGTATGTGCGAGGATCTAATACAAATTCCAACACCTGACACTTTTCAGTTTTCTTACATAGTGAGATACGCCCTCCTTAACAAAATTTAAGTAAAAATGATAATAAAAAAATTGATGTATTATACAATTTTTTTAACTATATACATATCAATTTTTCAACTATAATTTTTTTTTATATTTCAATTTTTGTTTATTTTTGTTTATATTTTTTTAAAATTTATTGAATAAATGATATATTTAGTTTATACTATAATTAGATACAATAATTATTTAATAAATTTAAAGAAGAAGAAAAAATCTTTATTTATAAATTAGATTGAAGAAAATACGTGGTGTGGTGAGCTGTTCCTTTCACAAGACTAGAGATAAGCTGGATCCATTCCAAAGTCCATGTTGCTTGTGATCCATCAATTAATGTTAGGGAAAGACAGATTGCTTTATTTATTTTGATTAGTTTTTATAGAAGGGCAACACAAATTGTTAAGAGGATTTCTTTTCAAGAAATTATTACCTTCAGTTATAGAGTACTACGTATTAACGTTCTTCACAACATACAAAAACTGTATTGTATTGGAATTTTGAAATTGAGTACTTATATTCTTTTAGGAACATAAACACTTTCTAATTTAAGTCTATTTTACTATGTAAAGTCTTGTGAAAATAAAATCTTATTTTTCATTGTTACTATATAAACTTAGCTTTGCATTAAACAAGAGCCATGCATTGAATATTCATAAGTCGTTGGTTTTGCAGGTAACTCAATTTAAGTGTGGTGGGATTTCATTGGGCCTTAGCTGGGCCCATGTTATGGGGGACCCACATTCAGCTTCAGATTTCATCAACTTATGGGGTCAAACCTTGAACAATTTGAGCCTAAAACTGCCCTTCAACATTCCAAGATCCGTCTCAACACCCCTTAATTTTGGATCCGAAAAGGAACCAGCTACATTTAAACGGGTTGACCCGGTTGGTGATCATTGGATCCCAGCCAACAACAAAAAAATGGACACATTCTCCTTCCACATAACTAGCTCCCTAATGAACAACTTGCAAGAACAAATTTGGGGTCCAAGTGTTGAACAAACCCCTCCATTTGAAACTTTATGTGCAATAATTTGGCATTGCATAGCCCGAGTTCGAGAAGGATCCGAACCCACAACCGTGACAGTTTGTCGACCCGACCCCAATGGTAGGGGCAATGATATAATGGGAAATGACCAATTGATATGCAAGGTTGAGGCAGGAAAAGAGTGTTCTATTGTTGACACTAGTTTGAAAATTTTGGCTAGCATGCTTGTGGATCAAGGTATTGATGAAAGAAATCAAATTATGGATATAGTAGAAAAAGATCAAGGGGTGACTGATTTTTTTGTCTATGGTGCCAATTTGACATTTCTTGACTTAGAAGATGTCAATGTGTATGACTTAAAATTAAAGGGACAAAAGCCAAGATTTGTTTACTACACACTTCAAGGGGTGGGAGATGAAGGTGTTGTTTTGGTGCTTCCTAAGGTGAATGATATTGATGGAAAATTTGTGACCATTATATTGCCAGAAGATGAAATGGTAAAACTTAAATCCGAGCTTAATGTGTATGGTATCATGTTTGAGGGTGATTTTTAA

Protein sequence

>MS.gene08811.t1

MVFPQEEKESLVYDLRVSSVGPGHATGSDVFHNPNGLDLAMKLHYLKVVYFFDSEAAQGLTIKKIKEALFNLLDYYFIPCGRFRRSESGRPFVKCNDCGARTIEANCTKTLDEWLAMMDWPSYKLLVSQQVIGPELSFSPSILLQVTQFKCGGISLGLSWAHVMGDPHSASDFINLWGQTLNNLSLKLPFNIPRSVSTPLNFGSEKEPATFKRVDPVGDHWIPANNKKMDTFSFHITSSLMNNLQEQIWGPSVEQTPPFETLCAIIWHCIARVREGSEPTTVTVCRPDPNGRGNDIMGNDQLICKVEAGKECSIVDTSLKILASMLVDQGIDERNQIMDIVEKDQGVTDFFVYGANLTFLDLEDVNVYDLKLKGQKPRFVYYTLQGVGDEGVVLVLPKVNDIDGKFVTIILPEDEMVKLKSELNVYGIMFEGDF