Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013125.t1 | XP_003602847.1 | 83.8 | 296 | 39 | 4 | 1 | 293 | 1 | 290 | 1.80E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013125.t1 | Q08935 | 30.6 | 180 | 114 | 4 | 93 | 263 | 88 | 265 | 2.3e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013125.t1 | G7J4G2 | 83.8 | 296 | 39 | 4 | 1 | 293 | 1 | 290 | 1.3e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013125 | MS.gene56256 | PPI |
| MS.gene013125 | MS.gene009458 | PPI |
| MS.gene013125 | MS.gene63514 | PPI |
| MS.gene013125 | MS.gene51627 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013125.t1 | MTR_3g099590 | 86.824 | 296 | 30 | 4 | 1 | 293 | 1 | 290 | 2.56e-178 | 493 |
| MS.gene013125.t1 | MTR_5g030020 | 34.759 | 187 | 116 | 2 | 94 | 278 | 98 | 280 | 3.28e-26 | 105 |
| MS.gene013125.t1 | MTR_4g104470 | 32.787 | 183 | 108 | 7 | 83 | 259 | 116 | 289 | 5.74e-25 | 101 |
| MS.gene013125.t1 | MTR_1g045510 | 36.872 | 179 | 100 | 7 | 92 | 264 | 113 | 284 | 5.81e-25 | 101 |
| MS.gene013125.t1 | MTR_3g075500 | 27.917 | 240 | 154 | 8 | 33 | 260 | 48 | 280 | 3.65e-24 | 99.4 |
| MS.gene013125.t1 | MTR_3g075500 | 29.442 | 197 | 123 | 7 | 66 | 250 | 78 | 270 | 3.11e-21 | 91.3 |
| MS.gene013125.t1 | MTR_7g106440 | 28.270 | 237 | 140 | 9 | 45 | 259 | 57 | 285 | 3.71e-20 | 89.0 |
| MS.gene013125.t1 | MTR_1g056520 | 30.055 | 183 | 119 | 5 | 84 | 259 | 100 | 280 | 4.76e-20 | 88.6 |
| MS.gene013125.t1 | MTR_1g064230 | 28.000 | 250 | 147 | 8 | 34 | 262 | 35 | 272 | 4.02e-17 | 79.7 |
| MS.gene013125.t1 | MTR_3g027140 | 30.088 | 226 | 143 | 9 | 45 | 259 | 11 | 232 | 6.96e-17 | 78.6 |
| MS.gene013125.t1 | MTR_1g061870 | 27.586 | 174 | 118 | 5 | 92 | 259 | 194 | 365 | 3.20e-14 | 73.2 |
| MS.gene013125.t1 | MTR_1g061870 | 26.437 | 174 | 124 | 3 | 94 | 267 | 105 | 274 | 1.61e-11 | 64.7 |
| MS.gene013125.t1 | MTR_7g102730 | 25.683 | 183 | 124 | 5 | 92 | 264 | 189 | 369 | 4.10e-14 | 72.8 |
| MS.gene013125.t1 | MTR_7g094660 | 28.495 | 186 | 120 | 6 | 94 | 270 | 643 | 824 | 4.95e-14 | 72.8 |
| MS.gene013125.t1 | MTR_1g097440 | 28.649 | 185 | 117 | 6 | 92 | 264 | 209 | 390 | 7.86e-13 | 68.9 |
| MS.gene013125.t1 | MTR_6g040190 | 28.108 | 185 | 118 | 6 | 92 | 264 | 200 | 381 | 2.15e-12 | 67.8 |
| MS.gene013125.t1 | MTR_5g097580 | 26.380 | 163 | 108 | 5 | 91 | 244 | 5 | 164 | 7.55e-12 | 65.9 |
| MS.gene013125.t1 | MTR_5g097580 | 26.380 | 163 | 108 | 5 | 91 | 244 | 5 | 164 | 7.62e-12 | 65.9 |
| MS.gene013125.t1 | MTR_7g013730 | 34.444 | 90 | 55 | 2 | 89 | 177 | 37 | 123 | 2.31e-11 | 63.2 |
| MS.gene013125.t1 | MTR_2g026180 | 25.153 | 163 | 108 | 5 | 93 | 244 | 5 | 164 | 3.95e-11 | 63.5 |
| MS.gene013125.t1 | MTR_4g122650 | 28.571 | 161 | 103 | 7 | 93 | 249 | 89 | 241 | 4.30e-11 | 63.9 |
| MS.gene013125.t1 | MTR_1g019150 | 27.222 | 180 | 116 | 3 | 97 | 264 | 216 | 392 | 5.50e-11 | 63.5 |
| MS.gene013125.t1 | MTR_6g477870 | 36.585 | 82 | 51 | 1 | 92 | 172 | 95 | 176 | 8.61e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013125.t1 | AT4G09040 | 63.043 | 184 | 66 | 2 | 87 | 268 | 89 | 272 | 3.74e-78 | 240 |
| MS.gene013125.t1 | AT4G09040 | 58.000 | 200 | 82 | 2 | 71 | 268 | 13 | 212 | 1.37e-77 | 236 |
| MS.gene013125.t1 | AT2G35410 | 32.016 | 253 | 157 | 3 | 34 | 271 | 28 | 280 | 4.99e-37 | 134 |
| MS.gene013125.t1 | AT1G60000 | 33.702 | 181 | 106 | 6 | 92 | 265 | 85 | 258 | 5.30e-23 | 95.5 |
| MS.gene013125.t1 | AT3G52380 | 31.633 | 196 | 114 | 7 | 75 | 259 | 106 | 292 | 5.41e-23 | 97.1 |
| MS.gene013125.t1 | AT5G50250 | 32.370 | 173 | 105 | 6 | 93 | 259 | 114 | 280 | 3.76e-22 | 94.0 |
| MS.gene013125.t1 | AT4G24770 | 31.609 | 174 | 107 | 6 | 92 | 259 | 150 | 317 | 1.71e-21 | 92.8 |
| MS.gene013125.t1 | AT4G24770 | 31.609 | 174 | 107 | 6 | 92 | 259 | 150 | 317 | 1.71e-21 | 92.8 |
| MS.gene013125.t1 | AT2G37220 | 30.526 | 190 | 107 | 5 | 93 | 260 | 92 | 278 | 5.15e-18 | 82.4 |
| MS.gene013125.t1 | AT3G16380 | 30.055 | 183 | 117 | 4 | 91 | 264 | 201 | 381 | 1.96e-15 | 76.6 |
| MS.gene013125.t1 | AT4G34110 | 28.962 | 183 | 118 | 4 | 92 | 264 | 215 | 395 | 1.20e-14 | 74.3 |
| MS.gene013125.t1 | AT2G36660 | 26.776 | 183 | 122 | 5 | 92 | 264 | 201 | 381 | 4.77e-14 | 72.8 |
| MS.gene013125.t1 | AT2G36660 | 26.901 | 171 | 119 | 4 | 94 | 264 | 114 | 278 | 3.62e-11 | 63.9 |
| MS.gene013125.t1 | AT3G52150 | 29.545 | 176 | 113 | 5 | 93 | 259 | 77 | 250 | 2.27e-12 | 66.2 |
| MS.gene013125.t1 | AT3G52150 | 29.545 | 176 | 113 | 5 | 93 | 259 | 77 | 250 | 2.27e-12 | 66.2 |
| MS.gene013125.t1 | AT2G23350 | 27.411 | 197 | 121 | 5 | 83 | 264 | 216 | 405 | 2.44e-12 | 67.4 |
| MS.gene013125.t1 | AT1G01080 | 26.667 | 195 | 122 | 5 | 80 | 259 | 96 | 284 | 5.99e-12 | 65.5 |
| MS.gene013125.t1 | AT1G71770 | 27.568 | 185 | 122 | 4 | 90 | 264 | 237 | 419 | 1.66e-11 | 65.1 |
| MS.gene013125.t1 | AT1G71770 | 27.568 | 185 | 122 | 4 | 90 | 264 | 237 | 419 | 1.66e-11 | 65.1 |
| MS.gene013125.t1 | AT5G41690 | 28.767 | 219 | 118 | 7 | 65 | 251 | 34 | 246 | 2.81e-11 | 64.3 |
| MS.gene013125.t1 | AT5G41690 | 28.767 | 219 | 118 | 7 | 65 | 251 | 34 | 246 | 2.81e-11 | 64.3 |
| MS.gene013125.t1 | AT5G41690 | 28.767 | 219 | 118 | 7 | 65 | 251 | 34 | 246 | 2.81e-11 | 64.3 |
| MS.gene013125.t1 | AT4G19610 | 27.982 | 218 | 142 | 9 | 52 | 257 | 558 | 772 | 3.03e-11 | 64.3 |
| MS.gene013125.t1 | AT1G22760 | 28.351 | 194 | 123 | 7 | 83 | 264 | 220 | 409 | 5.70e-11 | 63.5 |
Find 66 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAACAAGTTATATGTTAT+TGG | 0.178438 | 3.1:+79619369 | None:intergenic |
| GTTGTTTGGTTGTGATAATA+AGG | 0.277919 | 3.1:+79620593 | None:intergenic |
| GGGTTTAGCGTTTGTGGAAA+TGG | 0.293091 | 3.1:-79620245 | MS.gene013125:CDS |
| CAAATATGCTAAGCCTAAAA+AGG | 0.298308 | 3.1:-79619421 | MS.gene013125:CDS |
| TTTGTTCCTCGGTGGTTACT+TGG | 0.304393 | 3.1:+79620521 | None:intergenic |
| ATGGATAAACGAAGAGAATA+AGG | 0.330328 | 3.1:+79620637 | None:intergenic |
| TGTATAATAAGAACAGAAAC+AGG | 0.337196 | 3.1:-79620267 | MS.gene013125:CDS |
| AGAGCTGCAGAAGCTTCTTC+AGG | 0.366986 | 3.1:+79620217 | None:intergenic |
| AGCTTCTTTCTTAGACTTGA+AGG | 0.386679 | 3.1:+79619215 | None:intergenic |
| CCTAGACGGCCATCTGGTTA+TGG | 0.388895 | 3.1:-79619246 | MS.gene013125:CDS |
| TAGTAAGCGGTTTGTTCAAC+TGG | 0.391185 | 3.1:-79618975 | MS.gene013125:CDS |
| CAAACATTTCTTATGAAGTA+AGG | 0.396454 | 3.1:-79619344 | MS.gene013125:CDS |
| AAACAGGGGTTTAGCGTTTG+TGG | 0.413290 | 3.1:-79620251 | MS.gene013125:CDS |
| GGTTTAGCGTTTGTGGAAAT+GGG | 0.418798 | 3.1:-79620244 | MS.gene013125:CDS |
| AGTTGAACAAACCGCTTACT+AGG | 0.422121 | 3.1:+79618977 | None:intergenic |
| CCATAACCAGATGGCCGTCT+AGG | 0.428089 | 3.1:+79619246 | None:intergenic |
| GAAGCTCTTGCCGAGTTTGA+AGG | 0.428323 | 3.1:-79619189 | MS.gene013125:CDS |
| TTACTAGGTGCCACCCTTAG+TGG | 0.434877 | 3.1:+79618992 | None:intergenic |
| ATTGGCTTCCGTTCCACTGA+TGG | 0.442268 | 3.1:+79619387 | None:intergenic |
| GAACTCTTCGGTTTGTTCCT+CGG | 0.445669 | 3.1:+79620510 | None:intergenic |
| ACGAAGAGAATAAGGATTGA+GGG | 0.446924 | 3.1:+79620645 | None:intergenic |
| TTGGTTGTGATAATAAGGGC+TGG | 0.452679 | 3.1:+79620598 | None:intergenic |
| TACTTGGGTTTGTTGTTGTT+CGG | 0.458665 | 3.1:+79620537 | None:intergenic |
| AGTAGAATGAGAGAGTTGTT+TGG | 0.462029 | 3.1:+79620579 | None:intergenic |
| TGGTTGTGATAATAAGGGCT+GGG | 0.463306 | 3.1:+79620599 | None:intergenic |
| AATGCTGCGTAGGAGTTTGA+CGG | 0.476117 | 3.1:-79619459 | MS.gene013125:intron |
| AACGAAGAGAATAAGGATTG+AGG | 0.498160 | 3.1:+79620644 | None:intergenic |
| GAGAACCCTAGACGGCCATC+TGG | 0.499676 | 3.1:-79619252 | MS.gene013125:CDS |
| TTGTTTGGTTGTGATAATAA+GGG | 0.499915 | 3.1:+79620594 | None:intergenic |
| CAACTGGCGGAGGAGAGTGC+AGG | 0.500053 | 3.1:-79618959 | MS.gene013125:CDS |
| TGGAAAAGTCCTTGATGTTG+AGG | 0.503374 | 3.1:-79620410 | MS.gene013125:intron |
| CTTGTCAAAGTCGAAAGAGT+TGG | 0.505319 | 3.1:+79620681 | None:intergenic |
| TTGTTCCTCGGTGGTTACTT+GGG | 0.517713 | 3.1:+79620522 | None:intergenic |
| CATAACCAGATGGCCGTCTA+GGG | 0.521702 | 3.1:+79619247 | None:intergenic |
| AAGAGTTGGTTATTATTACA+TGG | 0.525296 | 3.1:+79620695 | None:intergenic |
| TTTGTGGAAGATAATTGAGT+TGG | 0.527851 | 3.1:+79620721 | None:intergenic |
| CGAGCTTACATACATACGAT+TGG | 0.548131 | 3.1:+79620185 | None:intergenic |
| TTGTTGTTGTTCGGAAGTAG+AGG | 0.554621 | 3.1:+79620546 | None:intergenic |
| TCTTGCCGAGTTTGAAGGAA+AGG | 0.556428 | 3.1:-79619184 | MS.gene013125:intron |
| TGGTAAAGTTGTTTCTGCAG+AGG | 0.561558 | 3.1:-79619286 | MS.gene013125:CDS |
| GGTTGTGATAATAAGGGCTG+GGG | 0.563236 | 3.1:+79620600 | None:intergenic |
| CCGAAGAGTTCTCTACTACC+AGG | 0.563866 | 3.1:-79620498 | MS.gene013125:CDS |
| AGTTACCTTTCCTTCAAACT+CGG | 0.570688 | 3.1:+79619179 | None:intergenic |
| GCGGTTTGTTCAACTGGCGG+AGG | 0.574915 | 3.1:-79618969 | MS.gene013125:CDS |
| GGAGAAAATACGGCCATCAG+TGG | 0.578295 | 3.1:-79619400 | MS.gene013125:CDS |
| CCTGGTAGTAGAGAACTCTT+CGG | 0.586085 | 3.1:+79620498 | None:intergenic |
| AGTAAGGTCTAAAGACCTCA+AGG | 0.590952 | 3.1:-79619328 | MS.gene013125:CDS |
| TATGGGAAGGCCACTAAGGG+TGG | 0.592174 | 3.1:-79619002 | MS.gene013125:CDS |
| AACATTCTGAGCAAGTAACC+TGG | 0.593923 | 3.1:+79620480 | None:intergenic |
| CATATTTGATATTTATTACG+CGG | 0.594638 | 3.1:+79619436 | None:intergenic |
| AACTGGCGGAGGAGAGTGCA+GGG | 0.612225 | 3.1:-79618958 | MS.gene013125:CDS |
| TACTTGCTCAGAATGTTCCA+TGG | 0.612581 | 3.1:-79620474 | MS.gene013125:CDS |
| CTCTTCGGTTTGTTCCTCGG+TGG | 0.623297 | 3.1:+79620513 | None:intergenic |
| CAAAGAACGAATATCTTCAG+TGG | 0.626913 | 3.1:+79620444 | None:intergenic |
| TAAGCGGTTTGTTCAACTGG+CGG | 0.631391 | 3.1:-79618972 | MS.gene013125:CDS |
| AAATACGGCCATCAGTGGAA+CGG | 0.640291 | 3.1:-79619395 | MS.gene013125:CDS |
| TTCTGAGTTGAGCGTCAATG+AGG | 0.642846 | 3.1:-79618921 | MS.gene013125:CDS |
| TGGGGTATGAGTATGAGTAA+TGG | 0.648687 | 3.1:+79620618 | None:intergenic |
| TCTTCAGTGGTACTTGACCA+TGG | 0.649901 | 3.1:+79620457 | None:intergenic |
| GACACAAATCCATAACCAGA+TGG | 0.653420 | 3.1:+79619237 | None:intergenic |
| TCTTTCATGAGAACCCTAGA+CGG | 0.656239 | 3.1:-79619260 | MS.gene013125:CDS |
| TATAATAAGAACAGAAACAG+GGG | 0.661478 | 3.1:-79620265 | MS.gene013125:CDS |
| GTATAATAAGAACAGAAACA+GGG | 0.680373 | 3.1:-79620266 | MS.gene013125:CDS |
| TAAGGGTGGCACCTAGTAAG+CGG | 0.686102 | 3.1:-79618988 | MS.gene013125:CDS |
| GAAGATAATTGAGTTGGACA+TGG | 0.691814 | 3.1:+79620727 | None:intergenic |
| ACAAACCCAAGTAACCACCG+AGG | 0.809424 | 3.1:-79620527 | MS.gene013125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAGAAAATAGTTATTATT+AGG | - | chr3.1:79619872-79619891 | MS.gene013125:intron | 15.0% |
| !!! | TTTTTTGTTTGTTTTTGTTT+TGG | - | chr3.1:79619340-79619359 | MS.gene013125:CDS | 15.0% |
| !! | ACAAACAAGTTATATGTTAT+TGG | + | chr3.1:79620286-79620305 | None:intergenic | 20.0% |
| !! | AGATAATTATCTTAGTTACT+TGG | + | chr3.1:79619961-79619980 | None:intergenic | 20.0% |
| !! | AGTTATTATTAGGTGAAAAT+TGG | - | chr3.1:79619882-79619901 | MS.gene013125:intron | 20.0% |
| !! | ATTATTTAGTATTGTGACAT+TGG | - | chr3.1:79620602-79620621 | MS.gene013125:CDS | 20.0% |
| !! | CATATTTGATATTTATTACG+CGG | + | chr3.1:79620219-79620238 | None:intergenic | 20.0% |
| !! | CCAAATTCAAATTAACAAAT+TGG | + | chr3.1:79620513-79620532 | None:intergenic | 20.0% |
| !! | TATTATGTTCAATTCATTTC+AGG | - | chr3.1:79619288-79619307 | MS.gene013125:CDS | 20.0% |
| !!! | ATATTTCTGCAGAATTTTAT+GGG | - | chr3.1:79620633-79620652 | MS.gene013125:CDS | 20.0% |
| !!! | CCAATTTGTTAATTTGAATT+TGG | - | chr3.1:79620510-79620529 | MS.gene013125:CDS | 20.0% |
| ! | ATAAAAAAACCTCAACATCA+AGG | + | chr3.1:79619254-79619273 | None:intergenic | 25.0% |
| ! | CAAACATTTCTTATGAAGTA+AGG | - | chr3.1:79620308-79620327 | MS.gene013125:intron | 25.0% |
| ! | CAGATAAACACATCAAATTA+AGG | + | chr3.1:79620162-79620181 | None:intergenic | 25.0% |
| ! | GAATATGATACAATTAGAGT+AGG | - | chr3.1:79619920-79619939 | MS.gene013125:intron | 25.0% |
| ! | GATTTGATAGAAATGGTTTA+CGG | + | chr3.1:79619994-79620013 | None:intergenic | 25.0% |
| ! | GTATAATAAGAACAGAAACA+GGG | - | chr3.1:79619386-79619405 | MS.gene013125:CDS | 25.0% |
| ! | TATAATAAGAACAGAAACAG+GGG | - | chr3.1:79619387-79619406 | MS.gene013125:CDS | 25.0% |
| ! | TGTATAATAAGAACAGAAAC+AGG | - | chr3.1:79619385-79619404 | MS.gene013125:CDS | 25.0% |
| ! | TGTTAGATATAGTTACTAGT+TGG | + | chr3.1:79620018-79620037 | None:intergenic | 25.0% |
| ! | TTGTTTGGTTGTGATAATAA+GGG | + | chr3.1:79619061-79619080 | None:intergenic | 25.0% |
| !! | AACGTGTGAATTTTATAGAT+AGG | - | chr3.1:79619555-79619574 | MS.gene013125:intron | 25.0% |
| !! | AAGAGTTGGTTATTATTACA+TGG | + | chr3.1:79618960-79618979 | None:intergenic | 25.0% |
| !! | ACGTGTGAATTTTATAGATA+GGG | - | chr3.1:79619556-79619575 | MS.gene013125:intron | 25.0% |
| !! | CGTTCTTTGTTTGAAAAATA+TGG | - | chr3.1:79619222-79619241 | MS.gene013125:CDS | 25.0% |
| !! | GATTTGATAGAATTGGTTTA+AGG | - | chr3.1:79619847-79619866 | MS.gene013125:intron | 25.0% |
| !! | GTAATTTTCTATGTCAAACT+CGG | - | chr3.1:79619805-79619824 | MS.gene013125:intron | 25.0% |
| !! | TATTATTACATGGTGTTTTG+TGG | + | chr3.1:79618950-79618969 | None:intergenic | 25.0% |
| !!! | AAATTTTAACCGCAATTTCT+TGG | - | chr3.1:79620563-79620582 | MS.gene013125:CDS | 25.0% |
| !!! | AATTGTTGTTATTTCGCAAT+AGG | - | chr3.1:79619670-79619689 | MS.gene013125:intron | 25.0% |
| !!! | GATATTTCTGCAGAATTTTA+TGG | - | chr3.1:79620632-79620651 | MS.gene013125:CDS | 25.0% |
| ACAAGACAAAAATCGAAAAG+AGG | + | chr3.1:79619507-79619526 | None:intergenic | 30.0% | |
| ACAGAGAGATTTGATAGAAT+TGG | - | chr3.1:79619840-79619859 | MS.gene013125:intron | 30.0% | |
| AGCCTAAAAAGGAGAAAATA+CGG | - | chr3.1:79620242-79620261 | MS.gene013125:CDS | 30.0% | |
| AGTTGGAGATTTGATAGAAA+TGG | + | chr3.1:79620001-79620020 | None:intergenic | 30.0% | |
| ATCAACAATGTTGTAACTTG+CGG | + | chr3.1:79619775-79619794 | None:intergenic | 30.0% | |
| ATGGATAAACGAAGAGAATA+AGG | + | chr3.1:79619018-79619037 | None:intergenic | 30.0% | |
| ATTGAAAGCTTAAACCCAAA+AGG | + | chr3.1:79619366-79619385 | None:intergenic | 30.0% | |
| CAAATATGCTAAGCCTAAAA+AGG | - | chr3.1:79620231-79620250 | MS.gene013125:CDS | 30.0% | |
| CAAGACAAAAATCGAAAAGA+GGG | + | chr3.1:79619506-79619525 | None:intergenic | 30.0% | |
| CTTAGTTACTTGGATTATGA+AGG | + | chr3.1:79619951-79619970 | None:intergenic | 30.0% | |
| GTTGTTTGGTTGTGATAATA+AGG | + | chr3.1:79619062-79619081 | None:intergenic | 30.0% | |
| TTTGTGGAAGATAATTGAGT+TGG | + | chr3.1:79618934-79618953 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCACACCCATTA+GGG | - | chr3.1:79620047-79620066 | MS.gene013125:intron | 30.0% |
| ! | TTGATAGAATTGGTTTAAGG+TGG | - | chr3.1:79619850-79619869 | MS.gene013125:intron | 30.0% |
| ! | TTTTTATGTGTCTTCTGTTG+TGG | - | chr3.1:79620109-79620128 | MS.gene013125:intron | 30.0% |
| !!! | CTCAAGGAGTTTTTTGATTT+GGG | - | chr3.1:79620340-79620359 | MS.gene013125:intron | 30.0% |
| !!! | TGTTTTTGTTTTGGCCTTTT+GGG | - | chr3.1:79619349-79619368 | MS.gene013125:CDS | 30.0% |
| !!! | TTGTTTTTGTTTTGGCCTTT+TGG | - | chr3.1:79619348-79619367 | MS.gene013125:CDS | 30.0% |
| AACGAAGAGAATAAGGATTG+AGG | + | chr3.1:79619011-79619030 | None:intergenic | 35.0% | |
| ACGAAGAGAATAAGGATTGA+GGG | + | chr3.1:79619010-79619029 | None:intergenic | 35.0% | |
| AGCTTCTTTCTTAGACTTGA+AGG | + | chr3.1:79620440-79620459 | None:intergenic | 35.0% | |
| AGTAGAATGAGAGAGTTGTT+TGG | + | chr3.1:79619076-79619095 | None:intergenic | 35.0% | |
| AGTTACCTTTCCTTCAAACT+CGG | + | chr3.1:79620476-79620495 | None:intergenic | 35.0% | |
| CAAAGAACGAATATCTTCAG+TGG | + | chr3.1:79619211-79619230 | None:intergenic | 35.0% | |
| CCAAATCAAAAAACTCCTTG+AGG | + | chr3.1:79620342-79620361 | None:intergenic | 35.0% | |
| CTTCTGTTGTGGAATTTACT+TGG | - | chr3.1:79620120-79620139 | MS.gene013125:intron | 35.0% | |
| GGAATTTACTTGGCATCTAT+AGG | - | chr3.1:79620130-79620149 | MS.gene013125:intron | 35.0% | |
| GTGTTATCTTATCCCCTAAT+GGG | + | chr3.1:79620063-79620082 | None:intergenic | 35.0% | |
| TATAGCACACTATAGCATAG+CGG | - | chr3.1:79619734-79619753 | MS.gene013125:intron | 35.0% | |
| TGTGTTATCTTATCCCCTAA+TGG | + | chr3.1:79620064-79620083 | None:intergenic | 35.0% | |
| TTACTTGGCATCTATAGGAA+GGG | - | chr3.1:79620135-79620154 | MS.gene013125:intron | 35.0% | |
| TTATTCTTTGAATGCTGCGT+AGG | - | chr3.1:79620183-79620202 | MS.gene013125:intron | 35.0% | |
| TTTACTTGGCATCTATAGGA+AGG | - | chr3.1:79620134-79620153 | MS.gene013125:intron | 35.0% | |
| ! | CTGAAATTTTCACACCCATT+AGG | - | chr3.1:79620046-79620065 | MS.gene013125:intron | 35.0% |
| ! | GAAATTTTCACACCCATTAG+GGG | - | chr3.1:79620048-79620067 | MS.gene013125:intron | 35.0% |
| ! | GCAACTGCTATTTGACAAAA+CGG | + | chr3.1:79619633-79619652 | None:intergenic | 35.0% |
| ! | TTCTGCAGAATTTTATGGGA+AGG | - | chr3.1:79620637-79620656 | MS.gene013125:CDS | 35.0% |
| !! | GAAGATAATTGAGTTGGACA+TGG | + | chr3.1:79618928-79618947 | None:intergenic | 35.0% |
| !! | TACTTGGGTTTGTTGTTGTT+CGG | + | chr3.1:79619118-79619137 | None:intergenic | 35.0% |
| !!! | CCTCAAGGAGTTTTTTGATT+TGG | - | chr3.1:79620339-79620358 | MS.gene013125:intron | 35.0% |
| !!! | GAGTTTTTTGATTTGGGAAC+TGG | - | chr3.1:79620346-79620365 | MS.gene013125:intron | 35.0% |
| AACATTCTGAGCAAGTAACC+TGG | + | chr3.1:79619175-79619194 | None:intergenic | 40.0% | |
| ACCGCAATTTCTTGGAGTTA+CGG | - | chr3.1:79620571-79620590 | MS.gene013125:CDS | 40.0% | |
| AGTAAGGTCTAAAGACCTCA+AGG | - | chr3.1:79620324-79620343 | MS.gene013125:intron | 40.0% | |
| AGTTGAACAAACCGCTTACT+AGG | + | chr3.1:79620678-79620697 | None:intergenic | 40.0% | |
| CGAGCTTACATACATACGAT+TGG | + | chr3.1:79619470-79619489 | None:intergenic | 40.0% | |
| CTTGTCAAAGTCGAAAGAGT+TGG | + | chr3.1:79618974-79618993 | None:intergenic | 40.0% | |
| GACACAAATCCATAACCAGA+TGG | + | chr3.1:79620418-79620437 | None:intergenic | 40.0% | |
| GGGTGTGAAAATTTCAGTGA+TGG | + | chr3.1:79620043-79620062 | None:intergenic | 40.0% | |
| GGTTTAGCGTTTGTGGAAAT+GGG | - | chr3.1:79619408-79619427 | MS.gene013125:CDS | 40.0% | |
| TACTTGCTCAGAATGTTCCA+TGG | - | chr3.1:79619178-79619197 | MS.gene013125:intron | 40.0% | |
| TCCGTAACTCCAAGAAATTG+CGG | + | chr3.1:79620575-79620594 | None:intergenic | 40.0% | |
| TCTTTCATGAGAACCCTAGA+CGG | - | chr3.1:79620392-79620411 | MS.gene013125:intron | 40.0% | |
| TGGAAAAGTCCTTGATGTTG+AGG | - | chr3.1:79619242-79619261 | MS.gene013125:CDS | 40.0% | |
| TGGGGTATGAGTATGAGTAA+TGG | + | chr3.1:79619037-79619056 | None:intergenic | 40.0% | |
| TGGTTGTGATAATAAGGGCT+GGG | + | chr3.1:79619056-79619075 | None:intergenic | 40.0% | |
| TTGGTTGTGATAATAAGGGC+TGG | + | chr3.1:79619057-79619076 | None:intergenic | 40.0% | |
| ! | ATTTTATGGGAAGGCCACTA+AGG | - | chr3.1:79620646-79620665 | MS.gene013125:CDS | 40.0% |
| ! | GGCCGTATTTTCTCCTTTTT+AGG | + | chr3.1:79620247-79620266 | None:intergenic | 40.0% |
| ! | TAGTAAGCGGTTTGTTCAAC+TGG | - | chr3.1:79620677-79620696 | MS.gene013125:CDS | 40.0% |
| ! | TTGTTGTTGTTCGGAAGTAG+AGG | + | chr3.1:79619109-79619128 | None:intergenic | 40.0% |
| ! | TTTTATGGGAAGGCCACTAA+GGG | - | chr3.1:79620647-79620666 | MS.gene013125:CDS | 40.0% |
| !! | TGGTAAAGTTGTTTCTGCAG+AGG | - | chr3.1:79620366-79620385 | MS.gene013125:intron | 40.0% |
| AAACAGGGGTTTAGCGTTTG+TGG | - | chr3.1:79619401-79619420 | MS.gene013125:CDS | 45.0% | |
| AAATACGGCCATCAGTGGAA+CGG | - | chr3.1:79620257-79620276 | MS.gene013125:CDS | 45.0% | |
| AATGCTGCGTAGGAGTTTGA+CGG | - | chr3.1:79620193-79620212 | MS.gene013125:intron | 45.0% | |
| CCTGGTAGTAGAGAACTCTT+CGG | + | chr3.1:79619157-79619176 | None:intergenic | 45.0% | |
| GCGTCAAATAGCAGTCATAG+TGG | - | chr3.1:79619708-79619727 | MS.gene013125:intron | 45.0% | |
| GGGTTTAGCGTTTGTGGAAA+TGG | - | chr3.1:79619407-79619426 | MS.gene013125:CDS | 45.0% | |
| GGTTGTGATAATAAGGGCTG+GGG | + | chr3.1:79619055-79619074 | None:intergenic | 45.0% | |
| TCTTCAGTGGTACTTGACCA+TGG | + | chr3.1:79619198-79619217 | None:intergenic | 45.0% | |
| TCTTGCCGAGTTTGAAGGAA+AGG | - | chr3.1:79620468-79620487 | MS.gene013125:CDS | 45.0% | |
| TTGTTCCTCGGTGGTTACTT+GGG | + | chr3.1:79619133-79619152 | None:intergenic | 45.0% | |
| TTTGTTCCTCGGTGGTTACT+TGG | + | chr3.1:79619134-79619153 | None:intergenic | 45.0% | |
| ! | GAACTCTTCGGTTTGTTCCT+CGG | + | chr3.1:79619145-79619164 | None:intergenic | 45.0% |
| ! | TAAGCGGTTTGTTCAACTGG+CGG | - | chr3.1:79620680-79620699 | MS.gene013125:CDS | 45.0% |
| ! | TTCTGAGTTGAGCGTCAATG+AGG | - | chr3.1:79620731-79620750 | MS.gene013125:CDS | 45.0% |
| ACAAACCCAAGTAACCACCG+AGG | - | chr3.1:79619125-79619144 | MS.gene013125:intron | 50.0% | |
| AGAGCTGCAGAAGCTTCTTC+AGG | + | chr3.1:79619438-79619457 | None:intergenic | 50.0% | |
| CATAACCAGATGGCCGTCTA+GGG | + | chr3.1:79620408-79620427 | None:intergenic | 50.0% | |
| CCGAAGAGTTCTCTACTACC+AGG | - | chr3.1:79619154-79619173 | MS.gene013125:intron | 50.0% | |
| GAAGCTCTTGCCGAGTTTGA+AGG | - | chr3.1:79620463-79620482 | MS.gene013125:CDS | 50.0% | |
| GGAGAAAATACGGCCATCAG+TGG | - | chr3.1:79620252-79620271 | MS.gene013125:CDS | 50.0% | |
| TAAGGGTGGCACCTAGTAAG+CGG | - | chr3.1:79620664-79620683 | MS.gene013125:CDS | 50.0% | |
| ! | ATTGGCTTCCGTTCCACTGA+TGG | + | chr3.1:79620268-79620287 | None:intergenic | 50.0% |
| ! | TTACTAGGTGCCACCCTTAG+TGG | + | chr3.1:79620663-79620682 | None:intergenic | 50.0% |
| CCATAACCAGATGGCCGTCT+AGG | + | chr3.1:79620409-79620428 | None:intergenic | 55.0% | |
| CCTAGACGGCCATCTGGTTA+TGG | - | chr3.1:79620406-79620425 | MS.gene013125:intron | 55.0% | |
| TATGGGAAGGCCACTAAGGG+TGG | - | chr3.1:79620650-79620669 | MS.gene013125:CDS | 55.0% | |
| ! | CTCTTCGGTTTGTTCCTCGG+TGG | + | chr3.1:79619142-79619161 | None:intergenic | 55.0% |
| GAGAACCCTAGACGGCCATC+TGG | - | chr3.1:79620400-79620419 | MS.gene013125:intron | 60.0% | |
| ! | AACTGGCGGAGGAGAGTGCA+GGG | - | chr3.1:79620694-79620713 | MS.gene013125:CDS | 60.0% |
| ! | GCGGTTTGTTCAACTGGCGG+AGG | - | chr3.1:79620683-79620702 | MS.gene013125:CDS | 60.0% |
| ! | CAACTGGCGGAGGAGAGTGC+AGG | - | chr3.1:79620693-79620712 | MS.gene013125:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 79618898 | 79620776 | 79618898 | ID=MS.gene013125 |
| chr3.1 | mRNA | 79618898 | 79620776 | 79618898 | ID=MS.gene013125.t1;Parent=MS.gene013125 |
| chr3.1 | exon | 79620411 | 79620776 | 79620411 | ID=MS.gene013125.t1.exon1;Parent=MS.gene013125.t1 |
| chr3.1 | CDS | 79620411 | 79620776 | 79620411 | ID=cds.MS.gene013125.t1;Parent=MS.gene013125.t1 |
| chr3.1 | exon | 79620198 | 79620296 | 79620198 | ID=MS.gene013125.t1.exon2;Parent=MS.gene013125.t1 |
| chr3.1 | CDS | 79620198 | 79620296 | 79620198 | ID=cds.MS.gene013125.t1;Parent=MS.gene013125.t1 |
| chr3.1 | exon | 79619185 | 79619469 | 79619185 | ID=MS.gene013125.t1.exon3;Parent=MS.gene013125.t1 |
| chr3.1 | CDS | 79619185 | 79619469 | 79619185 | ID=cds.MS.gene013125.t1;Parent=MS.gene013125.t1 |
| chr3.1 | exon | 79618898 | 79619029 | 79618898 | ID=MS.gene013125.t1.exon4;Parent=MS.gene013125.t1 |
| chr3.1 | CDS | 79618898 | 79619029 | 79618898 | ID=cds.MS.gene013125.t1;Parent=MS.gene013125.t1 |
| Gene Sequence |
| Protein sequence |
